HHsearch alignment for GI: 254780673 and conserved domain: TIGR03186
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=97.31 E-value=0.0023 Score=43.12 Aligned_cols=267 Identities=15% Similarity=0.189 Sum_probs=134.6
Q ss_pred CCCEECCCCCHHHHHH----HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC--CC
Q ss_conf 1110116666278998----99998871886445666667899999999987886742117767888799830244--57
Q gi|254780673|r 186 CERVIDTPITEHGFAG----IGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGA--AA 259 (467)
Q Consensus 186 ~~R~~d~pi~E~~~~G----~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~--~~ 259 (467)
T Consensus 559 ~GQILeEGInEAGa~sswiAAaTsYsth~~-pmIPfYIf-YSMFGF-QRvGDl---~WAAgD~raRGFLiGaTAGRTTLn 632 (889)
T TIGR03186 559 DGQILEEGISEAGAISSWIAAATSYSVHDL-PMLPFYIY-YSMFGF-QRIGDL---IWAAADQRARGFLIGATSGKTTLG 632 (889)
T ss_pred CCCCHHHCHHHHHHHHHHHHHHHHHHCCCC-EEEHHHHH-HHHHCC-CCCCCH---HHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 875233040233028999998751103895-21489999-987513-212533---776302103653787404544235
Q ss_pred CCCHHHHHHHHHH--HHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECCCCCCCCCCCCCCCCCEEC-----C
Q ss_conf 6444433216887--632203138665221000105556541----3783476402123333345334663121-----4
Q gi|254780673|r 260 RVAAQHSQCYAAW--YSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLENEILYGSSFEVPMVDDLVI-----P 328 (467)
Q Consensus 260 ~~g~~Hs~~~~~~--~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~~~ly~~~~~~p~~~~~~~-----p 328 (467)
T Consensus 633 GEGLQH-qDGHShllAstiPnc~sYDPafaYElAvIi~dGl~RMy~~~edvfYYi--Tv~NEny~~P~mP~~~~~~v~~g 709 (889)
T TIGR03186 633 GEGLQH-QDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYL--TVTNENYAQPSLPEDRLDAVRRG 709 (889)
T ss_pred CCCCCC-CCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 553211-662078886537875010652200227989999999986688747876--30354556878999826678602
Q ss_pred CCCE-EEE----ECCCCCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCC-
Q ss_conf 4311-444----3168745860257888888887531004-67527973300685799999999987198999957887-
Q gi|254780673|r 329 IGRA-RIH----RQGSDVTIISFGIGMTYATKAAIELEKN-GIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYP- 401 (467)
Q Consensus 329 ~Gk~-~i~----~~G~ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~- 401 (467)
T Consensus 710 I~kG~Y~~~~~~~~~~~vqLlgSG~il~ev~~Aa~iL~~d~gV~adVWSvTS~~EL~Rd~~--~~er~n~LhP~~~~~~~ 787 (889)
T TIGR03186 710 ILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGR--AAERAQRLGDAERPPSP 787 (889)
T ss_pred HHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHH--HHHHHHHCCCCCCCCCC
T ss_conf 4564320354567896379991579999999999999872099641782588899987699--99999860998777778
Q ss_pred ------CC--C---HHHHHHHHHHHHHHHHCCCCCEEECCCCC-CCCCCHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf ------67--6---78999999999677642898299717778-888896676560899899999999985020
Q gi|254780673|r 402 ------QS--S---VGSTIANQVQRKVFDYLDAPILTITGRDV-PMPYAANLEKLALPNVDEIIESVESICYKR 463 (467)
Q Consensus 402 ------~g--g---~g~~i~~~i~e~~f~~L~~p~~ri~~~d~-p~P~~~~le~~~~p~~~~I~~av~~v~~~~ 463 (467)
T Consensus 788 yv~~~L~~~~gPvvAasDymr~~~dqIr~~vp~~y~~LGTDGFGrSDTR~~LR~fFeVD~~~IvvaAL~~La~~ 861 (889)
T TIGR03186 788 HVAQALGATQGPVIAATDYVRAVPELIRAYVPRRYVTLGTDGFGRSDTRAALRAFFEVDRASIVIAALQALADD 861 (889)
T ss_pred HHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 79998279999879967666656999997469987573488887541579999875828899999999999985