HHsearch alignment for GI: 254780673 and conserved domain: TIGR03336
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.85 E-value=1.1e-06 Score=66.33 Aligned_cols=249 Identities=20% Similarity=0.247 Sum_probs=151.0
Q ss_pred HCCCC--CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 40811--1011666627899899998871886445666667899999999987886742117767888799830244576
Q gi|254780673|r 183 EFGCE--RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR 260 (467)
Q Consensus 183 ~fg~~--R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~ 260 (467)
T Consensus 40 ~~~~~~~i~~e~~~NEkvA~e~a~gA~~~Gvr~l~-~~K~vGlnva~D~l~~~~~-----~G~--~GG~v~v~--g--DD 107 (595)
T TIGR03336 40 KVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLRAFC-TMKHVGLNVAADPLMTLAY-----TGV--KGGLVVVV--A--DD 107 (595)
T ss_pred HHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEE-ECCCCCCCHHHHHHHHHHH-----HCC--CCEEEEEE--E--CC
T ss_conf 62042666998557889999998776442863899-8566884412778887652-----077--75599999--4--69
Q ss_pred CCHHHHHHHH--HHHHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECC-CCCCC----------CCCCCCCC-
Q ss_conf 4444332168--87632203138665221000105556541----3783476402-12333----------33453346-
Q gi|254780673|r 261 VAAQHSQCYA--AWYSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLEN-EILYG----------SSFEVPMV- 322 (467)
Q Consensus 261 ~g~~Hs~~~~--~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~-~~ly~----------~~~~~p~~- 322 (467)
T Consensus 108 pg~~SSq~eqdsr~~~~~a~iPvl~Ps~~qE~~d~~~~af~LSr~~g~pV~lr~ttrv~h~~~~V~~~~~~~~~~~~~~~ 187 (595)
T TIGR03336 108 PSMHSSQNEQDTRHYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFE 187 (595)
T ss_pred CCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCC
T ss_conf 99853516777899999849826778999999999999999999979987999887664345557658866677886556
Q ss_pred ---------------------------CCEE--CCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf ---------------------------6312--14431144431687458602578888888875310046752797330
Q gi|254780673|r 323 ---------------------------DDLV--IPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLR 373 (467)
Q Consensus 323 ---------------------------~~~~--~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r 373 (467)
T Consensus 188 ~~~~~~~~~p~~~~~~~~~l~~rl~~~~~~~~~~~~n--~v~~~~~~iGIItsG~~y~~v~eAl~~l---G~~i~ilKlg 262 (595)
T TIGR03336 188 KDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLN--RLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIG 262 (595)
T ss_pred CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEECCCCCEEEEECCCCHHHHHHHHHHC---CCCCCEEEEC
T ss_conf 7866528996668999999999999999999868996--6723999889992281089999999972---9996268843
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHH
Q ss_conf 06857999999999871989999578876767899999999967764289829971777888889667656089989999
Q gi|254780673|r 374 TIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEII 453 (467)
Q Consensus 374 ~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~ 453 (467)
T Consensus 263 m~~PLp~~~i~~F~~g~d~VlVVEE~~p---~---iE~qik~~~~~-~~~~~~v~GK~d~~lp~~GEl------~~~~i~ 329 (595)
T TIGR03336 263 FTYPVPEGLVEEFLSGVEEVLVVEELEP---V---VEEQVKALAGT-AGLNIKVHGKEDGFLPREGEL------NPDIVV 329 (595)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCH---H---HHHHHHHHHHH-CCCCCEEECCCCCCCCCCCCC------CHHHHH
T ss_conf 7678988999999845988999935836---5---89999999751-689954778887878865685------999999
Q ss_pred HHHHHHHC
Q ss_conf 99999850
Q gi|254780673|r 454 ESVESICY 461 (467)
Q Consensus 454 ~av~~v~~ 461 (467)
T Consensus 330 ~~l~~~~~ 337 (595)
T TIGR03336 330 NALAKFGL 337 (595)
T ss_pred HHHHHHHC
T ss_conf 99997534