HHsearch alignment for GI: 254780673 and conserved domain: TIGR03336

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.85  E-value=1.1e-06  Score=66.33  Aligned_cols=249  Identities=20%  Similarity=0.247  Sum_probs=151.0

Q ss_pred             HCCCC--CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             40811--1011666627899899998871886445666667899999999987886742117767888799830244576
Q gi|254780673|r  183 EFGCE--RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR  260 (467)
Q Consensus       183 ~fg~~--R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~  260 (467)
T Consensus        40 ~~~~~~~i~~e~~~NEkvA~e~a~gA~~~Gvr~l~-~~K~vGlnva~D~l~~~~~-----~G~--~GG~v~v~--g--DD  107 (595)
T TIGR03336        40 KVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLRAFC-TMKHVGLNVAADPLMTLAY-----TGV--KGGLVVVV--A--DD  107 (595)
T ss_pred             HHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEE-ECCCCCCCHHHHHHHHHHH-----HCC--CCEEEEEE--E--CC
T ss_conf             62042666998557889999998776442863899-8566884412778887652-----077--75599999--4--69


Q ss_pred             CCHHHHHHHH--HHHHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECC-CCCCC----------CCCCCCCC-
Q ss_conf             4444332168--87632203138665221000105556541----3783476402-12333----------33453346-
Q gi|254780673|r  261 VAAQHSQCYA--AWYSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLEN-EILYG----------SSFEVPMV-  322 (467)
Q Consensus       261 ~g~~Hs~~~~--~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~-~~ly~----------~~~~~p~~-  322 (467)
T Consensus       108 pg~~SSq~eqdsr~~~~~a~iPvl~Ps~~qE~~d~~~~af~LSr~~g~pV~lr~ttrv~h~~~~V~~~~~~~~~~~~~~~  187 (595)
T TIGR03336       108 PSMHSSQNEQDTRHYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFE  187 (595)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCC
T ss_conf             99853516777899999849826778999999999999999999979987999887664345557658866677886556


Q ss_pred             ---------------------------CCEE--CCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             ---------------------------6312--14431144431687458602578888888875310046752797330
Q gi|254780673|r  323 ---------------------------DDLV--IPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLR  373 (467)
Q Consensus       323 ---------------------------~~~~--~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r  373 (467)
T Consensus       188 ~~~~~~~~~p~~~~~~~~~l~~rl~~~~~~~~~~~~n--~v~~~~~~iGIItsG~~y~~v~eAl~~l---G~~i~ilKlg  262 (595)
T TIGR03336       188 KDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLN--RLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIG  262 (595)
T ss_pred             CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEECCCCCEEEEECCCCHHHHHHHHHHC---CCCCCEEEEC
T ss_conf             7866528996668999999999999999999868996--6723999889992281089999999972---9996268843


Q ss_pred             CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHH
Q ss_conf             06857999999999871989999578876767899999999967764289829971777888889667656089989999
Q gi|254780673|r  374 TIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEII  453 (467)
Q Consensus       374 ~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~  453 (467)
T Consensus       263 m~~PLp~~~i~~F~~g~d~VlVVEE~~p---~---iE~qik~~~~~-~~~~~~v~GK~d~~lp~~GEl------~~~~i~  329 (595)
T TIGR03336       263 FTYPVPEGLVEEFLSGVEEVLVVEELEP---V---VEEQVKALAGT-AGLNIKVHGKEDGFLPREGEL------NPDIVV  329 (595)
T ss_pred             CCCCCCHHHHHHHHHCCCEEEEEECCCH---H---HHHHHHHHHHH-CCCCCEEECCCCCCCCCCCCC------CHHHHH
T ss_conf             7678988999999845988999935836---5---89999999751-689954778887878865685------999999


Q ss_pred             HHHHHHHC
Q ss_conf             99999850
Q gi|254780673|r  454 ESVESICY  461 (467)
Q Consensus       454 ~av~~v~~  461 (467)
T Consensus       330 ~~l~~~~~  337 (595)
T TIGR03336       330 NALAKFGL  337 (595)
T ss_pred             HHHHHHHC
T ss_conf             99997534