Query gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Match_columns 467 No_of_seqs 267 out of 3345 Neff 6.9 Searched_HMMs 39220 Date Sun May 29 23:40:09 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780673.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK11892 pyruvate dehydrogenas 100.0 0 0 1112.0 38.7 462 1-462 1-464 (464) 2 COG0022 AcoB Pyruvate/2-oxoglu 100.0 0 0 814.3 26.0 323 139-462 1-324 (324) 3 PTZ00182 3-methyl-2-oxobutanat 100.0 0 0 787.1 28.0 331 127-461 22-355 (355) 4 PRK09212 pyruvate dehydrogenas 100.0 0 0 764.4 28.9 325 138-463 2-326 (327) 5 KOG0524 consensus 100.0 0 0 761.7 24.2 325 137-461 32-359 (359) 6 CHL00144 odpB pyruvate dehydro 100.0 0 0 755.1 28.6 323 138-461 2-324 (326) 7 KOG0525 consensus 100.0 0 0 572.0 15.0 324 134-461 35-361 (362) 8 COG3958 Transketolase, C-termi 100.0 0 0 404.9 24.2 300 138-460 5-312 (312) 9 COG1154 Dxs Deoxyxylulose-5-ph 100.0 0 0 387.5 23.7 300 140-464 316-626 (627) 10 PRK05444 1-deoxy-D-xylulose-5- 100.0 0 0 375.4 24.7 301 139-460 268-576 (576) 11 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 0 0 393.8 11.0 167 144-310 1-167 (167) 12 PRK12315 1-deoxy-D-xylulose-5- 100.0 0 0 364.6 25.3 298 139-461 277-581 (581) 13 PRK12571 1-deoxy-D-xylulose-5- 100.0 0 0 342.5 23.0 308 137-465 316-633 (642) 14 PRK05899 transketolase; Review 100.0 3.3E-37 8.5E-42 280.6 23.7 290 140-460 352-660 (661) 15 pfam02779 Transket_pyr Transke 100.0 2.2E-39 5.6E-44 295.9 12.1 168 139-314 2-173 (174) 16 KOG0523 consensus 100.0 5E-36 1.3E-40 272.3 20.1 302 137-464 317-629 (632) 17 PRK12754 transketolase; Review 100.0 7.9E-33 2E-37 249.9 17.9 289 141-460 356-663 (663) 18 cd07033 TPP_PYR_DXS_TK_like Py 100.0 2.6E-32 6.5E-37 246.3 12.3 151 144-309 1-155 (156) 19 PRK12753 transketolase; Review 100.0 1.6E-30 4.1E-35 233.7 21.0 292 139-460 353-662 (662) 20 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 7.9E-30 2E-34 228.8 17.8 316 123-459 300-625 (627) 21 PRK05704 dihydrolipoamide succ 100.0 1.3E-29 3.3E-34 227.3 12.8 85 1-86 1-85 (406) 22 PTZ00144 dihydrolipoamide succ 100.0 5.7E-29 1.5E-33 222.8 16.1 86 3-89 58-143 (430) 23 pfam02780 Transketolase_C Tran 100.0 3.4E-29 8.8E-34 224.3 13.1 123 330-452 1-124 (124) 24 TIGR01349 PDHac_trf_mito pyruv 100.0 1.3E-29 3.2E-34 227.4 9.2 157 4-161 1-171 (584) 25 smart00861 Transket_pyr Transk 100.0 4.6E-29 1.2E-33 223.4 12.1 157 141-310 1-167 (168) 26 PRK11855 dihydrolipoamide acet 100.0 1.6E-28 4.1E-33 219.6 12.4 86 1-87 1-86 (549) 27 COG0508 AceF Pyruvate/2-oxoglu 100.0 8.2E-28 2.1E-32 214.7 11.5 83 1-84 1-83 (404) 28 TIGR02927 SucB_Actino 2-oxoglu 99.9 4.3E-28 1.1E-32 216.6 5.9 78 2-80 135-212 (607) 29 PRK11856 branched-chain alpha- 99.9 4.1E-26 1E-30 202.7 13.9 75 3-78 2-76 (324) 30 TIGR02927 SucB_Actino 2-oxoglu 99.9 2.8E-27 7E-32 211.0 6.2 86 1-87 1-86 (607) 31 KOG0557 consensus 99.9 3.5E-26 8.8E-31 203.3 10.8 91 3-93 39-129 (470) 32 TIGR01347 sucB 2-oxoglutarate 99.9 5.9E-27 1.5E-31 208.6 5.5 76 3-79 1-76 (435) 33 PRK11855 dihydrolipoamide acet 99.9 1.6E-25 4E-30 198.7 11.5 83 2-85 117-199 (549) 34 PTZ00089 transketolase; Provis 99.9 3.9E-23 9.8E-28 181.9 17.9 288 141-462 356-667 (670) 35 PRK11854 aceF dihydrolipoamide 99.9 2.5E-24 6.4E-29 190.2 11.3 83 1-86 1-83 (630) 36 TIGR01348 PDHac_trf_long pyruv 99.9 3.3E-22 8.3E-27 175.4 10.9 201 3-220 207-417 (655) 37 KOG0559 consensus 99.9 2.6E-22 6.5E-27 176.1 6.4 77 3-80 73-149 (457) 38 PRK11854 aceF dihydrolipoamide 99.8 8.6E-21 2.2E-25 165.4 10.6 79 3-84 106-184 (630) 39 TIGR01349 PDHac_trf_mito pyruv 99.8 1.1E-20 2.8E-25 164.7 8.7 337 3-373 128-504 (584) 40 TIGR01348 PDHac_trf_long pyruv 99.8 2.6E-20 6.7E-25 162.0 9.0 81 3-84 1-81 (655) 41 COG0021 TktA Transketolase [Ca 99.8 2.5E-18 6.4E-23 148.1 18.6 292 138-461 352-663 (663) 42 cd06663 Biotinyl_lipoyl_domain 99.8 2.3E-19 6E-24 155.4 9.4 72 5-77 2-73 (73) 43 cd06849 lipoyl_domain Lipoyl d 99.8 1.5E-18 3.9E-23 149.6 9.4 74 3-77 1-74 (74) 44 pfam00364 Biotin_lipoyl Biotin 99.7 9.2E-18 2.3E-22 144.2 8.1 73 3-77 1-73 (73) 45 TIGR00232 tktlase_bact transke 99.6 1.4E-14 3.7E-19 121.8 14.9 291 140-461 355-675 (675) 46 PRK08659 2-oxoglutarate ferred 99.6 4E-13 1E-17 111.6 16.6 241 188-460 50-376 (377) 47 PRK07119 2-ketoisovalerate fer 99.6 1.8E-12 4.5E-17 107.1 18.3 243 189-461 50-349 (350) 48 PRK09627 oorA 2-oxoglutarate-a 99.5 2.3E-12 5.9E-17 106.3 16.4 237 188-459 49-375 (375) 49 PRK12270 kgd alpha-ketoglutara 99.5 6.1E-12 1.5E-16 103.3 15.9 280 145-439 891-1215(1234) 50 KOG0558 consensus 99.5 1E-13 2.7E-18 115.7 5.8 78 3-81 65-142 (474) 51 PRK09404 kgd alpha-ketoglutara 99.4 3.3E-11 8.4E-16 98.2 17.3 282 144-439 587-912 (931) 52 cd06850 biotinyl_domain The bi 99.3 9.7E-12 2.5E-16 101.9 8.0 61 16-77 7-67 (67) 53 PRK08367 porA pyruvate ferredo 99.3 1.1E-09 2.8E-14 87.5 17.6 213 188-416 52-338 (395) 54 PRK09622 porA pyruvate flavodo 99.3 1.3E-09 3.4E-14 86.9 17.8 250 188-464 58-388 (407) 55 PRK08366 vorA 2-ketoisovalerat 99.3 5.6E-10 1.4E-14 89.6 14.8 242 194-462 60-380 (394) 56 PRK05641 putative acetyl-CoA c 99.1 4.9E-10 1.2E-14 90.0 8.1 62 16-78 87-148 (148) 57 COG0511 AccB Biotin carboxyl c 99.0 1.3E-09 3.3E-14 87.0 8.1 62 16-78 78-139 (140) 58 PRK06549 acetyl-CoA carboxylas 99.0 1.4E-09 3.5E-14 86.8 8.0 61 17-78 72-132 (132) 59 PRK08225 acetyl-CoA carboxylas 99.0 4.2E-09 1.1E-13 83.4 8.3 62 16-78 9-70 (70) 60 PRK05889 putative acetyl-CoA c 98.9 5.2E-09 1.3E-13 82.8 8.3 61 16-77 10-70 (71) 61 TIGR03336 IOR_alpha indolepyru 98.9 1.1E-06 2.9E-11 66.3 17.9 249 183-461 40-337 (595) 62 PRK09282 pyruvate carboxylase 98.8 3.3E-08 8.4E-13 77.2 8.1 27 334-360 328-354 (580) 63 PRK07051 hypothetical protein; 98.8 2.2E-08 5.7E-13 78.3 7.1 58 21-79 23-80 (80) 64 PRK12999 pyruvate carboxylase; 98.8 3.9E-08 9.9E-13 76.6 8.0 81 348-429 689-772 (1147) 65 COG0567 SucA 2-oxoglutarate de 98.7 2.2E-07 5.7E-12 71.3 11.4 278 145-436 565-884 (906) 66 COG4231 Indolepyruvate ferredo 98.7 1.7E-06 4.3E-11 65.1 15.3 254 181-463 49-356 (640) 67 PRK06302 acetyl-CoA carboxylas 98.7 6.1E-08 1.6E-12 75.3 6.5 55 22-77 100-154 (155) 68 COG0674 PorA Pyruvate:ferredox 98.6 2.8E-06 7E-11 63.7 14.5 231 188-433 48-349 (365) 69 KOG0451 consensus 98.6 3.1E-07 7.9E-12 70.3 9.0 293 145-455 563-910 (913) 70 KOG0450 consensus 98.6 2.4E-06 6.2E-11 64.1 12.7 282 144-436 647-991 (1017) 71 TIGR01108 oadA oxaloacetate de 98.5 1.3E-07 3.3E-12 73.0 4.6 57 17-74 560-616 (616) 72 COG3957 Phosphoketolase [Carbo 98.5 8.9E-06 2.3E-10 60.1 12.9 225 144-379 405-670 (793) 73 TIGR02712 urea_carbox urea car 98.4 9.2E-07 2.4E-11 67.0 7.4 61 16-77 1165-1225(1226) 74 COG4770 Acetyl/propionyl-CoA c 98.3 3.6E-06 9.3E-11 62.8 7.4 41 335-378 372-421 (645) 75 PRK09405 aceE pyruvate dehydro 98.2 6E-05 1.5E-09 54.3 11.5 303 144-463 496-859 (886) 76 TIGR01235 pyruv_carbox pyruvat 98.1 1.2E-05 3E-10 59.3 6.7 81 350-431 708-792 (1169) 77 COG1038 PycA Pyruvate carboxyl 98.0 1.7E-05 4.4E-10 58.1 6.3 80 349-429 692-774 (1149) 78 KOG0368 consensus 97.8 0.0001 2.6E-09 52.6 6.7 69 13-83 690-758 (2196) 79 KOG0369 consensus 97.7 0.0001 2.7E-09 52.6 6.3 13 170-182 604-617 (1176) 80 PRK11578 macrolide transporter 97.7 0.00013 3.3E-09 51.9 6.5 36 44-80 37-72 (347) 81 PRK11556 multidrug efflux syst 97.6 0.00019 4.7E-09 50.8 6.4 42 37-80 80-121 (415) 82 PRK13012 2-oxoacid dehydrogena 97.6 0.00075 1.9E-08 46.6 9.1 263 187-463 573-871 (898) 83 PRK03598 hypothetical protein; 97.5 0.00081 2.1E-08 46.3 7.8 40 38-80 38-77 (331) 84 PRK05261 putative phosphoketol 97.3 0.0045 1.2E-07 41.1 10.5 256 144-416 395-700 (786) 85 COG2609 AceE Pyruvate dehydrog 97.3 0.012 2.9E-07 38.3 12.4 293 140-463 492-860 (887) 86 TIGR03186 AKGDH_not_PDH alpha- 97.3 0.0023 5.9E-08 43.1 8.8 267 186-463 559-861 (889) 87 PRK10476 multidrug resistance 97.3 0.0017 4.4E-08 44.0 7.8 49 27-80 36-84 (348) 88 pfam01855 POR_N domain. This f 97.3 0.002 5E-08 43.6 7.9 108 192-310 41-154 (230) 89 PRK09578 periplasmic multidrug 97.2 0.0019 4.9E-08 43.7 7.6 57 22-80 41-97 (385) 90 TIGR03077 not_gcvH glycine cle 97.2 0.00047 1.2E-08 48.0 4.2 41 23-63 37-77 (110) 91 cd06586 TPP_enzyme_PYR Pyrimid 97.2 0.0041 1E-07 41.4 8.7 141 149-306 2-150 (154) 92 KOG0559 consensus 97.1 0.0015 3.9E-08 44.4 6.3 28 15-42 122-149 (457) 93 PRK10559 p-hydroxybenzoic acid 97.1 0.0025 6.4E-08 42.9 7.3 33 46-79 48-80 (310) 94 PRK00624 glycine cleavage syst 97.1 0.00066 1.7E-08 47.0 4.3 40 23-62 38-77 (113) 95 PRK13030 2-oxoacid ferredoxin 97.1 0.029 7.4E-07 35.4 13.7 310 129-462 19-406 (1168) 96 cd07034 TPP_PYR_PFOR_IOR-alpha 97.1 0.0038 9.6E-08 41.6 8.1 109 187-307 42-157 (160) 97 TIGR00759 aceE 2-oxo-acid dehy 97.1 0.011 2.8E-07 38.4 10.4 219 186-433 569-822 (905) 98 cd06848 GCS_H Glycine cleavage 97.1 0.00095 2.4E-08 45.8 4.9 47 17-63 29-76 (96) 99 KOG0238 consensus 97.0 0.001 2.6E-08 45.7 4.6 12 343-354 386-397 (670) 100 PRK05704 dihydrolipoamide succ 97.0 0.01 2.7E-07 38.6 9.4 36 12-47 49-84 (406) 101 PRK09859 multidrug efflux syst 96.9 0.0037 9.5E-08 41.7 6.7 36 44-80 60-95 (385) 102 PRK13380 glycine cleavage syst 96.9 0.0012 3.1E-08 45.1 4.0 40 23-62 45-84 (132) 103 PRK01202 glycine cleavage syst 96.8 0.0016 4.2E-08 44.2 4.3 46 17-62 37-83 (127) 104 pfam01597 GCV_H Glycine cleava 96.8 0.0017 4.3E-08 44.1 4.2 46 17-62 31-77 (122) 105 COG0509 GcvH Glycine cleavage 96.7 0.0019 4.9E-08 43.7 3.9 44 17-60 39-83 (131) 106 cd06252 M14_ASTE_ASPA_like_2 A 96.7 0.011 2.9E-07 38.3 7.7 18 144-161 109-126 (316) 107 TIGR00531 BCCP acetyl-CoA carb 96.6 0.0019 4.8E-08 43.8 3.3 58 20-78 101-158 (159) 108 PRK09783 copper/silver efflux 96.6 0.016 4E-07 37.3 8.0 35 44-79 120-155 (407) 109 TIGR03309 matur_yqeB selenium- 96.2 0.018 4.5E-07 37.0 6.4 56 20-81 175-230 (256) 110 PTZ00144 dihydrolipoamide succ 96.2 0.022 5.7E-07 36.2 6.8 32 12-43 104-135 (430) 111 PRK05352 Na(+)-translocating N 96.0 0.0059 1.5E-07 40.3 3.1 43 17-64 39-83 (448) 112 PRK09193 indolepyruvate ferred 96.0 0.15 3.7E-06 30.5 13.2 306 132-461 21-404 (1155) 113 cd06251 M14_ASTE_ASPA_like_1 A 96.0 0.044 1.1E-06 34.2 7.4 18 145-162 95-112 (287) 114 TIGR03297 Ppyr-DeCO2ase phosph 95.8 0.029 7.5E-07 35.4 5.9 168 181-360 21-209 (361) 115 PRK11892 pyruvate dehydrogenas 95.8 0.029 7.4E-07 35.4 5.7 28 52-80 15-42 (464) 116 TIGR00239 2oxo_dh_E1 2-oxoglut 95.7 0.064 1.6E-06 33.0 7.4 282 149-437 629-971 (990) 117 cd06250 M14_PaAOTO_like An unc 95.6 0.066 1.7E-06 32.9 7.1 13 47-59 4-16 (359) 118 TIGR01843 type_I_hlyD type I s 95.2 0.014 3.5E-07 37.7 2.6 37 46-83 44-80 (434) 119 TIGR00527 gcvH glycine cleavag 95.2 0.017 4.4E-07 37.0 3.0 37 24-60 44-80 (132) 120 pfam00529 HlyD HlyD family sec 95.1 0.023 5.9E-07 36.1 3.5 35 45-80 2-36 (304) 121 COG3608 Predicted deacylase [G 95.1 0.059 1.5E-06 33.3 5.5 22 141-162 120-141 (331) 122 pfam05896 NQRA Na(+)-transloca 95.0 0.027 6.8E-07 35.7 3.6 44 17-63 38-83 (257) 123 PRK07051 hypothetical protein; 94.6 0.04 1E-06 34.4 3.7 26 15-40 54-79 (80) 124 PRK08225 acetyl-CoA carboxylas 94.5 0.062 1.6E-06 33.1 4.4 33 46-79 2-34 (70) 125 cd06254 M14_ASTE_ASPA_like_4 A 94.2 0.17 4.2E-06 30.1 6.1 19 144-162 93-111 (288) 126 PRK09259 putative oxalyl-CoA d 94.2 0.24 6.2E-06 29.0 6.8 47 144-193 204-251 (572) 127 pfam03894 XFP D-xylulose 5-pho 93.8 0.18 4.6E-06 29.9 5.6 148 146-300 4-179 (179) 128 PRK03598 hypothetical protein; 93.5 0.17 4.4E-06 30.0 5.0 30 15-44 50-79 (331) 129 PRK05889 putative acetyl-CoA c 93.5 0.11 2.8E-06 31.4 4.0 33 46-79 3-35 (71) 130 cd06850 biotinyl_domain The bi 93.3 0.12 3E-06 31.1 4.0 33 47-80 1-33 (67) 131 COG0511 AccB Biotin carboxyl c 93.3 0.13 3.3E-06 30.8 4.1 34 45-79 70-103 (140) 132 cd02008 TPP_IOR_alpha Thiamine 93.3 0.7 1.8E-05 25.7 8.1 110 188-306 45-172 (178) 133 pfam00529 HlyD HlyD family sec 93.2 0.13 3.4E-06 30.8 4.1 35 14-48 8-42 (304) 134 TIGR02176 pyruv_ox_red pyruvat 93.2 0.41 1E-05 27.4 6.6 91 340-431 266-365 (1194) 135 cd06255 M14_ASTE_ASPA_like_5 A 93.0 0.34 8.6E-06 28.0 5.9 29 131-161 88-116 (293) 136 PRK06748 hypothetical protein; 92.9 0.57 1.5E-05 26.3 7.0 65 15-80 12-77 (84) 137 TIGR03254 oxalate_oxc oxalyl-C 92.8 0.48 1.2E-05 26.9 6.4 16 448-463 513-528 (554) 138 COG4656 RnfC Predicted NADH:ub 92.4 0.14 3.7E-06 30.5 3.3 42 17-60 42-83 (529) 139 PRK12784 hypothetical protein; 92.3 0.79 2E-05 25.4 7.1 65 15-80 12-77 (84) 140 PRK06549 acetyl-CoA carboxylas 91.8 0.28 7.1E-06 28.5 4.3 34 45-79 63-96 (132) 141 pfam04952 AstE_AspA Succinylgl 91.7 0.78 2E-05 25.4 6.4 19 144-162 85-103 (289) 142 PRK11556 multidrug efflux syst 91.6 0.24 6E-06 29.0 3.7 31 15-45 94-124 (415) 143 cd06663 Biotinyl_lipoyl_domain 91.5 0.21 5.4E-06 29.4 3.3 30 50-80 10-39 (73) 144 COG0508 AceF Pyruvate/2-oxoglu 91.5 0.26 6.7E-06 28.7 3.8 29 51-80 14-42 (404) 145 PRK10476 multidrug resistance 91.5 0.41 1E-05 27.4 4.8 31 15-45 57-87 (348) 146 PRK05641 putative acetyl-CoA c 91.4 0.33 8.5E-06 28.0 4.3 32 47-79 81-112 (148) 147 PRK11578 macrolide transporter 91.1 0.34 8.7E-06 27.9 4.1 32 15-46 45-76 (347) 148 COG1726 NqrA Na+-transporting 90.9 0.36 9.1E-06 27.8 4.0 40 21-63 42-83 (447) 149 PRK11856 branched-chain alpha- 90.9 0.32 8.2E-06 28.1 3.8 150 50-208 12-166 (324) 150 TIGR01108 oadA oxaloacetate de 90.8 0.28 7.1E-06 28.6 3.4 62 139-201 3-84 (616) 151 KOG3373 consensus 90.7 0.19 4.7E-06 29.8 2.4 37 25-61 89-125 (172) 152 cd06849 lipoyl_domain Lipoyl d 90.5 0.32 8.1E-06 28.1 3.5 30 50-80 11-40 (74) 153 TIGR00998 8a0101 efflux pump m 90.0 0.4 1E-05 27.4 3.7 35 45-80 42-77 (379) 154 pfam00364 Biotin_lipoyl Biotin 89.7 0.41 1E-05 27.4 3.5 26 53-80 14-39 (73) 155 PRK09578 periplasmic multidrug 89.1 0.61 1.6E-05 26.2 4.0 29 15-43 70-98 (385) 156 cd01134 V_A-ATPase_A V/A-type 88.8 1.9 4.8E-05 22.7 6.4 57 23-82 54-113 (369) 157 TIGR02971 heterocyst_DevB ABC 88.5 0.18 4.5E-06 29.9 1.0 40 46-86 14-59 (363) 158 TIGR01843 type_I_hlyD type I s 88.2 0.32 8.1E-06 28.1 2.1 35 13-47 48-82 (434) 159 cd00568 TPP_enzymes Thiamine p 88.0 1.6 4.1E-05 23.2 5.6 110 184-306 34-164 (168) 160 PRK07449 2-succinyl-6-hydroxy- 88.0 2.1 5.4E-05 22.4 6.6 13 448-460 504-516 (548) 161 PRK09859 multidrug efflux syst 87.9 0.82 2.1E-05 25.2 4.0 30 15-44 68-97 (385) 162 PRK05035 electron transport co 87.9 0.59 1.5E-05 26.2 3.3 47 13-60 48-94 (725) 163 TIGR02645 ARCH_P_rylase putati 87.8 0.4 1E-05 27.4 2.4 70 338-417 314-389 (499) 164 PRK13479 2-aminoethylphosphona 86.9 2.4 6.2E-05 22.0 7.1 11 273-283 195-205 (368) 165 cd02002 TPP_BFDC Thiamine pyro 86.9 2.1 5.3E-05 22.4 5.6 29 278-306 146-174 (178) 166 PRK11269 glyoxylate carboligas 86.8 2.4 6.2E-05 21.9 6.1 13 448-460 527-539 (591) 167 pfam02749 QRPTase_N Quinolinat 86.6 0.81 2.1E-05 25.3 3.4 23 20-42 47-69 (88) 168 TIGR01936 nqrA NADH:ubiquinone 86.4 0.37 9.4E-06 27.7 1.6 71 17-95 38-110 (466) 169 pfam09891 DUF2118 Uncharacteri 85.9 2.7 6.9E-05 21.6 5.8 45 15-59 86-131 (149) 170 PRK13029 2-oxoacid ferredoxin 85.8 2.7 7E-05 21.6 11.3 308 136-461 27-417 (1186) 171 TIGR01945 rnfC electron transp 85.6 0.77 2E-05 25.5 2.9 43 17-60 40-82 (444) 172 cd02013 TPP_Xsc_like Thiamine 85.1 2.7 6.9E-05 21.6 5.5 114 181-305 38-173 (196) 173 pfam07831 PYNP_C Pyrimidine nu 85.1 0.81 2.1E-05 25.3 2.8 30 14-43 28-57 (75) 174 cd02003 TPP_IolD Thiamine pyro 85.0 3 7.6E-05 21.3 6.5 38 268-306 142-179 (205) 175 TIGR01730 RND_mfp efflux trans 85.0 2.4 6E-05 22.0 5.1 36 45-81 26-61 (333) 176 PRK09016 quinolinate phosphori 84.6 0.95 2.4E-05 24.8 3.0 42 375-419 234-275 (296) 177 TIGR00078 nadC nicotinate-nucl 84.5 1.3 3.2E-05 23.9 3.6 48 367-420 207-257 (276) 178 TIGR02971 heterocyst_DevB ABC 84.4 0.6 1.5E-05 26.2 1.9 40 9-48 16-60 (363) 179 PRK06978 nicotinate-nucleotide 84.3 1.3 3.3E-05 23.8 3.6 41 376-419 226-266 (288) 180 PRK09824 beta-glucoside-specif 83.1 1.9 4.9E-05 22.6 4.0 17 41-57 35-51 (625) 181 TIGR02644 Y_phosphoryl pyrimid 83.0 1.3 3.4E-05 23.8 3.2 45 381-425 218-263 (425) 182 PRK07092 benzoylformate decarb 82.8 3.6 9.3E-05 20.7 8.2 47 144-193 185-232 (521) 183 COG0157 NadC Nicotinate-nucleo 82.7 1.5 3.9E-05 23.4 3.4 59 367-436 209-269 (280) 184 cd00210 PTS_IIA_glc PTS_IIA, P 82.4 0.91 2.3E-05 24.9 2.1 17 60-77 85-101 (124) 185 COG0426 FpaA Uncharacterized f 82.3 3.4 8.8E-05 20.9 5.1 53 340-395 248-303 (388) 186 cd02009 TPP_SHCHC_synthase Thi 82.3 3.8 9.7E-05 20.6 7.1 107 188-306 43-170 (175) 187 PRK07896 nicotinate-nucleotide 82.1 1.6 4.2E-05 23.1 3.4 39 377-418 226-267 (288) 188 COG0845 AcrA Membrane-fusion p 81.8 4 0.0001 20.4 6.1 46 33-80 55-100 (372) 189 PRK00149 dnaA chromosomal repl 81.8 2.5 6.4E-05 21.8 4.2 172 222-416 121-308 (447) 190 cd02010 TPP_ALS Thiamine pyrop 81.7 4 0.0001 20.4 5.7 114 180-306 32-165 (177) 191 pfam00358 PTS_EIIA_1 phosphoen 80.2 1.2 3.1E-05 24.1 2.1 17 60-77 90-106 (133) 192 PRK04350 thymidine phosphoryla 80.0 2.6 6.7E-05 21.7 3.8 18 195-212 124-141 (502) 193 PRK06106 nicotinate-nucleotide 80.0 2.4 6.2E-05 21.9 3.6 55 367-432 213-267 (281) 194 TIGR01043 ATP_syn_A_arch ATP s 78.9 4.9 0.00012 19.8 6.1 56 23-82 122-181 (584) 195 cd06451 AGAT_like Alanine-glyo 78.9 4 0.0001 20.4 4.5 45 406-460 304-355 (356) 196 cd01573 modD_like ModD; Quinol 78.6 2.5 6.4E-05 21.9 3.3 50 367-419 204-253 (272) 197 COG1155 NtpA Archaeal/vacuolar 78.0 5.2 0.00013 19.6 6.3 59 20-82 114-180 (588) 198 PRK08385 nicotinate-nucleotide 77.8 2.7 7E-05 21.6 3.3 50 367-419 204-255 (279) 199 PRK05848 nicotinate-nucleotide 77.2 2.9 7.4E-05 21.4 3.3 48 367-417 202-249 (272) 200 TIGR03327 AMP_phos AMP phospho 76.8 3.2 8.2E-05 21.1 3.5 11 349-359 327-337 (500) 201 TIGR01420 pilT_fam twitching m 76.6 1.6 4.2E-05 23.1 2.0 85 335-435 197-289 (350) 202 PRK06543 nicotinate-nucleotide 76.6 3 7.7E-05 21.3 3.3 47 367-419 214-260 (281) 203 PRK08072 nicotinate-nucleotide 76.4 3.1 7.9E-05 21.2 3.3 47 367-419 209-255 (277) 204 PRK06096 molybdenum transport 76.3 2.7 6.9E-05 21.6 3.0 51 366-419 209-259 (284) 205 TIGR00830 PTBA PTS system, glu 75.7 1.4 3.5E-05 23.7 1.3 28 19-46 89-116 (129) 206 TIGR01995 PTS-II-ABC-beta PTS 75.5 1 2.6E-05 24.6 0.6 12 199-210 410-421 (660) 207 cd01572 QPRTase Quinolinate ph 75.2 3 7.7E-05 21.3 3.0 54 367-431 203-256 (268) 208 PRK05742 nicotinate-nucleotide 75.2 2.9 7.5E-05 21.4 2.9 47 367-419 210-256 (277) 209 pfam06898 YqfD Putative stage 74.7 5.1 0.00013 19.7 4.0 18 47-64 191-208 (383) 210 cd02014 TPP_POX Thiamine pyrop 74.5 6.4 0.00016 19.0 6.6 112 184-306 39-168 (178) 211 pfam03446 NAD_binding_2 NAD bi 73.6 6.7 0.00017 18.9 4.6 33 394-426 90-122 (163) 212 PRK07428 nicotinate-nucleotide 73.3 4.1 0.0001 20.3 3.3 59 366-432 213-271 (285) 213 cd02006 TPP_Gcl Thiamine pyrop 73.0 6.9 0.00018 18.8 7.4 62 180-253 41-108 (202) 214 cd02015 TPP_AHAS Thiamine pyro 73.0 6.9 0.00018 18.8 4.9 113 181-306 35-169 (186) 215 cd01568 QPRTase_NadC Quinolina 72.8 4.1 0.00011 20.3 3.2 48 367-418 202-249 (269) 216 pfam02666 PS_Dcarbxylase Phosp 72.6 7.1 0.00018 18.7 4.7 24 332-355 155-178 (201) 217 COG1566 EmrA Multidrug resista 72.5 6.7 0.00017 18.8 4.2 40 40-80 43-87 (352) 218 COG2190 NagE Phosphotransferas 72.4 2.3 5.9E-05 22.1 1.8 27 18-44 87-113 (156) 219 PRK10255 N-acetyl glucosamine 70.7 2.4 6.2E-05 21.9 1.6 10 387-396 431-440 (648) 220 PRK08266 hypothetical protein; 70.4 7.9 0.0002 18.4 7.4 16 448-463 497-512 (531) 221 TIGR00999 8a0102 Membrane Fusi 70.4 5.7 0.00015 19.3 3.5 36 46-82 105-140 (284) 222 PRK06457 pyruvate dehydrogenas 70.3 7.9 0.0002 18.4 5.9 14 448-461 494-507 (549) 223 COG0075 Serine-pyruvate aminot 70.0 8 0.0002 18.3 6.1 15 272-286 194-208 (383) 224 COG4032 Predicted thiamine-pyr 70.0 2.3 5.9E-05 22.1 1.4 122 178-309 31-162 (172) 225 PRK07789 acetolactate synthase 68.5 8.6 0.00022 18.1 10.0 156 129-306 20-186 (612) 226 KOG1668 consensus 67.9 2.9 7.4E-05 21.4 1.5 14 387-400 190-203 (231) 227 PRK12474 hypothetical protein; 67.8 8.8 0.00023 18.0 6.6 16 448-463 494-509 (518) 228 cd07035 TPP_PYR_POX_like Pyrim 67.7 8.9 0.00023 18.0 5.7 118 178-306 24-151 (155) 229 pfam07462 MSP1_C Merozoite sur 67.5 4.9 0.00012 19.8 2.6 38 163-200 339-376 (574) 230 TIGR02153 gatD_arch glutamyl-t 67.4 9 0.00023 17.9 8.4 150 104-296 54-226 (413) 231 TIGR02876 spore_yqfD sporulati 66.9 3.8 9.7E-05 20.6 2.0 29 45-73 191-219 (406) 232 COG0213 DeoA Thymidine phospho 66.1 7 0.00018 18.7 3.2 12 387-398 389-400 (435) 233 pfam03358 FMN_red NADPH-depend 66.1 9.5 0.00024 17.8 5.8 27 349-375 16-42 (147) 234 PRK02458 ribose-phosphate pyro 65.9 9.6 0.00024 17.8 4.0 41 422-463 268-310 (323) 235 PRK06559 nicotinate-nucleotide 64.9 5.7 0.00015 19.3 2.6 48 376-431 224-271 (290) 236 cd07037 TPP_PYR_MenD Pyrimidin 64.6 10 0.00026 17.6 6.6 108 188-305 37-157 (162) 237 PTZ00142 6-phosphogluconate de 62.1 11 0.00029 17.3 6.6 94 149-267 90-191 (474) 238 TIGR02013 rpoB DNA-directed RN 61.3 4.4 0.00011 20.1 1.4 29 186-219 724-752 (1449) 239 PRK02597 DNA-directed RNA poly 61.0 12 0.0003 17.2 3.6 35 22-56 410-451 (1295) 240 COG1071 AcoA Pyruvate/2-oxoglu 60.5 12 0.0003 17.1 5.0 105 191-309 135-258 (358) 241 COG1152 CdhA CO dehydrogenase/ 60.4 12 0.0003 17.1 6.6 25 341-365 611-635 (772) 242 PRK08617 acetolactate synthase 60.4 12 0.00031 17.1 12.3 17 447-463 510-526 (552) 243 TIGR01931 cysJ sulfite reducta 60.3 12 0.00031 17.1 4.2 93 337-429 340-488 (628) 244 CHL00117 rpoC2 RNA polymerase 60.2 12 0.00031 17.1 3.6 36 21-56 408-451 (1350) 245 PRK08155 acetolactate synthase 59.8 12 0.00031 17.0 5.1 16 448-463 518-533 (564) 246 COG0680 HyaD Ni,Fe-hydrogenase 58.3 13 0.00033 16.8 4.6 14 366-379 36-49 (160) 247 cd03035 ArsC_Yffb Arsenate Red 57.9 13 0.00033 16.8 4.4 40 351-391 10-49 (105) 248 TIGR00955 3a01204 Pigment prec 57.3 13 0.00034 16.7 3.4 111 137-290 173-285 (671) 249 PRK07418 acetolactate synthase 55.7 14 0.00036 16.5 9.8 26 194-219 67-92 (615) 250 TIGR00072 hydrog_prot hydrogen 54.9 15 0.00037 16.5 4.2 30 366-397 39-68 (170) 251 TIGR03301 PhnW-AepZ 2-aminoeth 54.7 15 0.00038 16.4 6.6 15 271-285 187-201 (355) 252 COG0034 PurF Glutamine phospho 54.4 15 0.00038 16.4 3.9 97 340-439 285-396 (470) 253 pfam02775 TPP_enzyme_C Thiamin 53.6 15 0.00039 16.3 4.4 111 185-306 17-148 (150) 254 PRK08327 acetolactate synthase 53.3 15 0.00039 16.3 7.8 19 195-213 58-76 (568) 255 TIGR00354 polC DNA polymerase 53.2 9 0.00023 17.9 1.9 109 159-268 842-978 (1173) 256 PRK07064 hypothetical protein; 53.1 16 0.0004 16.3 5.4 14 448-461 503-516 (544) 257 TIGR03257 met_CoM_red_bet meth 52.9 13 0.00034 16.8 2.8 12 349-360 297-308 (433) 258 pfam01551 Peptidase_M23 Peptid 52.4 11 0.00028 17.4 2.2 68 3-81 6-76 (96) 259 cd07039 TPP_PYR_POX Pyrimidine 51.6 16 0.00042 16.1 8.0 118 178-305 27-153 (164) 260 pfam11160 DUF2945 Protein of u 51.6 16 0.00042 16.1 3.7 34 11-44 9-48 (62) 261 PRK09107 acetolactate synthase 51.5 16 0.00042 16.1 7.8 14 435-448 562-575 (594) 262 PRK07308 flavodoxin; Validated 51.5 17 0.00042 16.1 4.2 58 347-411 13-70 (147) 263 PRK06048 acetolactate synthase 51.5 17 0.00042 16.1 7.3 47 145-193 196-242 (562) 264 TIGR03393 indolpyr_decarb indo 50.8 17 0.00043 16.0 5.1 14 447-460 501-514 (539) 265 TIGR01135 glmS glucosamine--fr 50.7 17 0.00042 16.1 3.0 41 331-371 298-339 (628) 266 PRK07524 hypothetical protein; 50.4 17 0.00044 16.0 7.2 16 448-463 504-519 (534) 267 TIGR00874 talAB transaldolase; 50.3 6.9 0.00018 18.8 0.9 58 348-406 136-210 (324) 268 PRK00941 acetyl-CoA decarbonyl 50.0 17 0.00044 15.9 5.7 24 342-365 614-637 (779) 269 PRK11637 hypothetical protein; 49.6 10 0.00026 17.5 1.8 14 332-345 362-375 (404) 270 smart00226 LMWPc Low molecular 48.9 18 0.00046 15.8 4.9 91 354-462 44-140 (140) 271 PRK07050 cystathionine beta-ly 48.7 18 0.00046 15.8 5.6 47 145-194 92-139 (394) 272 cd03034 ArsC_ArsC Arsenate Red 48.0 19 0.00047 15.7 4.3 76 352-429 11-97 (112) 273 TIGR01315 5C_CHO_kinase FGGY-f 48.0 7 0.00018 18.7 0.7 104 341-446 439-556 (574) 274 CHL00006 consensus 48.0 19 0.00047 15.7 3.5 36 21-56 405-448 (1372) 275 TIGR03394 indol_phenyl_DC indo 47.9 19 0.00048 15.7 6.4 38 154-193 198-236 (535) 276 PRK06276 acetolactate synthase 47.6 19 0.00048 15.7 8.8 31 433-463 548-585 (586) 277 PRK05569 flavodoxin; Provision 47.5 17 0.00043 16.0 2.6 32 345-376 11-42 (141) 278 PRK08236 hypothetical protein; 47.4 8 0.0002 18.3 0.9 49 147-196 14-62 (207) 279 PRK06456 acetolactate synthase 47.2 19 0.00049 15.6 8.9 46 145-192 196-241 (572) 280 PRK08322 acetolactate synthase 47.0 19 0.00049 15.6 6.3 34 159-194 199-232 (547) 281 COG1069 AraB Ribulose kinase [ 46.6 15 0.00037 16.5 2.1 82 341-425 403-490 (544) 282 PRK06242 flavodoxin; Provision 46.5 20 0.0005 15.6 5.9 62 394-457 79-141 (150) 283 PRK05939 hypothetical protein; 46.5 20 0.0005 15.6 3.8 46 145-194 73-119 (396) 284 COG2805 PilT Tfp pilus assembl 46.3 14 0.00035 16.7 2.0 29 404-433 257-285 (353) 285 cd02005 TPP_PDC_IPDC Thiamine 45.4 20 0.00052 15.5 7.9 108 185-305 39-168 (183) 286 COG0028 IlvB Thiamine pyrophos 45.3 20 0.00052 15.5 6.4 19 195-213 47-65 (550) 287 cd02004 TPP_BZL_OCoD_HPCL Thia 45.1 21 0.00052 15.4 8.3 115 180-306 32-167 (172) 288 pfam09363 XFP_C XFP C-terminal 45.0 20 0.00051 15.5 2.6 133 226-392 13-164 (203) 289 pfam00308 Bac_DnaA Bacterial d 44.9 21 0.00053 15.4 4.8 71 227-302 15-87 (219) 290 PRK06222 ferredoxin-NADP(+) re 44.9 21 0.00053 15.4 4.5 26 342-368 183-208 (281) 291 PRK04192 V-type ATP synthase s 44.8 21 0.00053 15.4 6.7 54 24-80 124-180 (585) 292 PRK08045 cystathionine gamma-s 44.8 21 0.00053 15.4 4.3 51 145-199 79-130 (386) 293 PRK12490 6-phosphogluconate de 44.0 21 0.00054 15.3 5.2 24 173-196 97-122 (298) 294 COG4635 HemG Flavodoxin [Energ 43.8 21 0.00055 15.3 7.6 72 347-426 12-83 (175) 295 PRK07979 acetolactate synthase 43.1 22 0.00056 15.2 12.9 14 448-461 520-533 (574) 296 PRK07710 acetolactate synthase 41.7 23 0.00059 15.1 9.8 13 448-460 523-535 (571) 297 cd01131 PilT Pilus retraction 41.5 14 0.00035 16.6 1.4 19 147-165 64-82 (198) 298 pfam02776 TPP_enzyme_N Thiamin 41.4 23 0.00059 15.1 6.2 118 177-305 27-156 (172) 299 PRK05858 hypothetical protein; 41.3 23 0.0006 15.0 6.3 47 144-193 193-240 (543) 300 PRK05452 anaerobic nitric oxid 41.1 23 0.0006 15.0 5.4 47 345-394 261-309 (479) 301 TIGR01553 formate-DH-alph form 41.0 19 0.00049 15.6 2.1 68 278-358 233-305 (1043) 302 PRK02269 ribose-phosphate pyro 40.6 24 0.00061 15.0 4.2 42 422-463 267-310 (321) 303 cd03375 TPP_OGFOR Thiamine pyr 40.5 24 0.00061 15.0 6.1 148 144-306 12-179 (193) 304 cd01493 APPBP1_RUB Ubiquitin a 40.1 24 0.00062 14.9 3.2 52 378-436 359-410 (425) 305 PRK11798 ClpXP protease specif 40.0 24 0.00062 14.9 2.5 55 26-87 40-102 (140) 306 cd01521 RHOD_PspE2 Member of t 39.5 22 0.00057 15.2 2.2 37 335-373 61-97 (110) 307 pfam01451 LMWPc Low molecular 39.2 25 0.00064 14.8 2.7 91 353-461 45-139 (140) 308 TIGR03181 PDH_E1_alph_x pyruva 39.1 25 0.00064 14.8 4.5 99 198-309 130-243 (341) 309 PRK08978 acetolactate synthase 39.0 25 0.00064 14.8 7.5 26 159-185 199-224 (548) 310 cd01522 RHOD_1 Member of the R 38.8 25 0.00065 14.8 4.0 21 351-372 75-95 (117) 311 PRK08341 amidophosphoribosyltr 38.4 26 0.00066 14.7 2.5 69 367-438 304-381 (442) 312 PRK08134 O-acetylhomoserine am 37.9 26 0.00067 14.7 3.9 46 145-193 91-137 (433) 313 KOG3424 consensus 37.9 26 0.00067 14.7 3.1 56 143-199 37-101 (132) 314 PRK12309 transaldolase/EF-hand 37.9 17 0.00044 16.0 1.4 22 349-370 139-160 (391) 315 PTZ00145 phosphoribosylpyropho 37.8 26 0.00067 14.7 4.5 146 319-466 262-436 (443) 316 PRK11921 metallo-beta-lactamas 37.8 26 0.00067 14.7 4.4 47 345-394 257-305 (395) 317 PRK09754 phenylpropionate diox 37.7 26 0.00067 14.7 4.1 13 340-352 231-243 (400) 318 cd01856 YlqF YlqF. Proteins o 37.7 26 0.00067 14.7 4.9 54 222-288 5-59 (171) 319 TIGR02124 hypE hydrogenase exp 37.5 17 0.00044 16.0 1.3 44 194-239 72-121 (345) 320 TIGR01318 gltD_gamma_fam gluta 37.5 26 0.00067 14.7 2.3 29 273-301 287-315 (480) 321 PRK09246 amidophosphoribosyltr 37.1 27 0.00069 14.6 3.4 88 348-438 303-405 (503) 322 TIGR02104 pulA_typeI pullulana 37.0 21 0.00055 15.3 1.8 33 34-66 12-44 (655) 323 TIGR02386 rpoC_TIGR DNA-direct 37.0 26 0.00066 14.7 2.2 24 52-78 1186-1209(1552) 324 PRK07178 acetyl-CoA carboxylas 36.9 27 0.00069 14.6 3.9 11 246-256 151-161 (471) 325 PRK08849 2-octaprenyl-3-methyl 36.9 27 0.00069 14.6 3.7 18 390-407 278-299 (384) 326 PRK07282 acetolactate synthase 36.6 27 0.0007 14.5 5.6 31 160-192 214-244 (566) 327 TIGR01822 2am3keto_CoA 2-amino 36.5 28 0.0007 14.5 2.5 122 267-407 88-218 (395) 328 PRK06460 hypothetical protein; 36.5 28 0.0007 14.5 5.1 46 145-193 72-118 (375) 329 cd06219 DHOD_e_trans_like1 FAD 36.4 28 0.00071 14.5 3.4 37 328-364 87-123 (248) 330 TIGR02637 RhaS rhamnose ABC tr 36.3 22 0.00056 15.3 1.7 120 144-287 68-196 (307) 331 COG0593 DnaA ATPase involved i 36.2 28 0.00071 14.5 4.8 75 221-300 88-164 (408) 332 cd06063 H2MP_Cyano-H2up This g 36.2 28 0.00071 14.5 4.9 28 366-397 32-59 (146) 333 PRK13984 putative oxidoreducta 35.8 28 0.00072 14.5 2.8 57 333-389 413-475 (604) 334 PRK06965 acetolactate synthase 35.6 28 0.00072 14.4 6.2 14 448-461 536-549 (587) 335 TIGR01000 bacteriocin_acc bact 35.5 13 0.00032 16.9 0.4 44 37-81 52-95 (476) 336 TIGR00107 deoD purine nucleosi 35.2 29 0.00074 14.4 2.3 57 339-399 122-181 (234) 337 PRK08199 acetolactate synthase 35.2 29 0.00074 14.4 7.7 35 157-193 199-233 (553) 338 PRK10310 galactitol-specific P 35.0 29 0.00074 14.4 2.7 32 342-373 5-40 (94) 339 PRK07504 O-succinylhomoserine 34.9 29 0.00074 14.4 4.3 49 145-196 92-141 (397) 340 PRK07847 amidophosphoribosyltr 34.9 29 0.00074 14.4 4.1 52 384-438 336-389 (489) 341 cd01129 PulE-GspE PulE/GspE Th 34.9 24 0.00062 14.9 1.8 36 249-290 83-120 (264) 342 COG1393 ArsC Arsenate reductas 34.7 29 0.00075 14.3 4.7 96 341-440 3-109 (117) 343 PRK12902 secA preprotein trans 34.1 30 0.00076 14.3 2.2 63 334-398 440-502 (946) 344 KOG2891 consensus 33.9 12 0.0003 17.2 0.0 55 179-233 180-245 (445) 345 cd00859 HisRS_anticodon HisRS 33.8 30 0.00077 14.3 5.3 32 340-371 3-35 (91) 346 COG0056 AtpA F0F1-type ATP syn 33.8 30 0.00077 14.3 7.0 19 25-43 27-45 (504) 347 PRK08979 acetolactate synthase 33.8 30 0.00077 14.2 7.3 14 448-461 520-533 (572) 348 COG0094 RplE Ribosomal protein 33.7 5.8 0.00015 19.3 -1.6 135 187-365 33-175 (180) 349 PRK03369 murD UDP-N-acetylmura 33.6 30 0.00078 14.2 2.9 16 19-34 27-42 (487) 350 cd02977 ArsC_family Arsenate R 33.6 31 0.00078 14.2 3.9 77 351-429 10-98 (105) 351 PRK06234 methionine gamma-lyas 33.5 31 0.00078 14.2 4.1 46 145-193 91-137 (399) 352 TIGR02746 TraC-F-type type-IV 33.0 12 0.00031 17.0 -0.0 40 381-420 724-765 (900) 353 PRK05793 amidophosphoribosyltr 32.7 32 0.0008 14.1 4.0 52 384-438 350-403 (472) 354 PRK10126 tyrosine phosphatase; 32.3 19 0.00048 15.7 0.9 92 354-463 47-142 (147) 355 PRK06388 amidophosphoribosyltr 32.2 32 0.00082 14.1 3.3 50 386-438 352-403 (474) 356 CHL00037 petA cytochrome f 31.9 26 0.00066 14.8 1.5 18 399-416 265-282 (320) 357 PRK08114 cystathionine beta-ly 31.9 32 0.00083 14.0 4.6 46 145-193 89-135 (395) 358 PRK12326 preprotein translocas 31.5 33 0.00084 14.0 4.5 61 334-398 434-494 (775) 359 PRK09124 pyruvate dehydrogenas 31.3 33 0.00084 14.0 6.0 30 160-193 205-234 (574) 360 CHL00122 secA preprotein trans 31.1 33 0.00085 14.0 2.8 63 334-398 420-482 (891) 361 PRK13344 spxA transcriptional 31.0 34 0.00085 13.9 7.0 101 351-455 11-123 (132) 362 PRK08525 amidophosphoribosyltr 30.9 34 0.00086 13.9 5.0 52 384-438 334-387 (445) 363 PRK05968 hypothetical protein; 30.8 34 0.00086 13.9 5.9 46 145-193 90-136 (389) 364 pfam03960 ArsC ArsC family. Th 30.5 34 0.00087 13.9 4.5 91 352-446 8-110 (111) 365 PRK06781 amidophosphoribosyltr 30.5 34 0.00087 13.9 4.1 52 384-438 342-395 (471) 366 TIGR02870 spore_II_D stage II 30.5 31 0.0008 14.1 1.8 35 334-368 307-343 (358) 367 COG0621 MiaB 2-methylthioadeni 30.3 34 0.00088 13.9 2.6 32 144-175 177-208 (437) 368 cd00115 LMWPc Substituted upda 30.1 35 0.00088 13.8 3.2 102 340-459 29-139 (141) 369 cd03418 GRX_GRXb_1_3_like Glut 30.1 35 0.00089 13.8 4.4 56 350-411 10-70 (75) 370 TIGR02070 mono_pep_trsgly mono 30.0 35 0.00089 13.8 3.4 11 276-286 64-74 (228) 371 PRK09123 amidophosphoribosyltr 29.9 35 0.00089 13.8 4.0 52 384-438 345-398 (480) 372 PRK12809 putative oxidoreducta 29.7 35 0.0009 13.8 2.9 49 337-387 450-500 (639) 373 PRK02812 ribose-phosphate pyro 29.6 35 0.0009 13.8 5.4 40 426-465 285-326 (331) 374 PRK12422 chromosomal replicati 29.5 35 0.0009 13.8 4.4 130 242-388 137-281 (455) 375 PRK08591 acetyl-CoA carboxylas 29.5 36 0.00091 13.8 4.3 57 245-320 151-212 (449) 376 PRK12346 transaldolase A; Prov 29.4 31 0.00078 14.2 1.5 22 349-370 134-155 (316) 377 pfam00354 Pentaxin Pentaxin fa 29.3 36 0.00091 13.7 2.1 47 158-204 121-167 (193) 378 pfam04430 DUF498 Protein of un 29.1 28 0.0007 14.5 1.3 37 337-373 52-89 (110) 379 PRK05269 transaldolase B; Prov 29.0 32 0.00081 14.1 1.6 22 349-370 135-156 (320) 380 PRK08527 acetolactate synthase 28.9 36 0.00092 13.7 9.3 15 448-462 514-528 (560) 381 COG2258 Uncharacterized protei 28.9 34 0.00087 13.9 1.7 10 336-345 152-161 (210) 382 PRK10046 dpiA two-component re 28.8 36 0.00093 13.7 4.3 103 266-392 17-123 (225) 383 cd00152 PTX Pentraxins are pla 28.7 37 0.00093 13.7 3.2 48 157-204 128-175 (201) 384 cd04914 ACT_AKi-DapG-BS_1 ACT 28.7 37 0.00093 13.7 2.8 24 350-373 13-36 (67) 385 PRK10638 glutaredoxin 3; Provi 28.5 37 0.00094 13.7 4.7 68 339-413 2-73 (83) 386 COG2521 Predicted archaeal met 28.3 37 0.00095 13.6 4.1 116 330-447 125-271 (287) 387 PRK08654 pyruvate carboxylase 28.2 37 0.00095 13.6 4.6 18 342-359 387-404 (497) 388 pfam06508 ExsB ExsB. This fami 28.2 25 0.00063 14.9 0.9 14 364-377 52-65 (137) 389 PRK01655 spxA transcriptional 28.2 37 0.00095 13.6 5.0 100 352-454 12-122 (131) 390 PRK11391 etp phosphotyrosine-p 28.0 38 0.00096 13.6 2.6 91 354-462 47-141 (144) 391 PRK01999 consensus 27.8 38 0.00097 13.6 4.4 25 337-364 211-239 (311) 392 PRK12778 putative bifunctional 27.8 38 0.00097 13.6 4.5 63 336-401 437-511 (760) 393 PRK07811 cystathionine gamma-s 27.8 38 0.00097 13.6 5.5 48 145-195 85-133 (386) 394 COG0813 DeoD Purine-nucleoside 27.7 29 0.00075 14.3 1.2 63 334-399 119-183 (236) 395 PRK08249 cystathionine gamma-s 27.6 38 0.00097 13.5 4.0 47 145-194 91-138 (398) 396 cd03036 ArsC_like Arsenate Red 26.9 39 0.001 13.5 4.5 86 351-439 10-108 (111) 397 cd03033 ArsC_15kD Arsenate Red 26.9 39 0.001 13.5 4.8 47 340-388 1-47 (113) 398 TIGR01317 GOGAT_sm_gam glutama 26.8 39 0.001 13.5 2.9 34 335-371 148-181 (517) 399 cd01491 Ube1_repeat1 Ubiquitin 26.8 39 0.001 13.4 3.4 28 402-436 244-271 (286) 400 PRK06698 bifunctional 5'-methy 26.8 22 0.00057 15.2 0.5 69 336-410 344-414 (459) 401 TIGR03406 FeS_long_SufT probab 26.7 39 0.001 13.4 2.2 25 364-388 145-169 (174) 402 PRK06725 acetolactate synthase 26.7 40 0.001 13.4 6.2 16 448-463 520-535 (570) 403 KOG2772 consensus 26.6 30 0.00076 14.3 1.1 51 349-400 147-213 (337) 404 KOG0398 consensus 26.6 40 0.001 13.4 1.9 88 187-302 125-218 (278) 405 pfam00456 Transketolase_N Tran 26.6 40 0.001 13.4 2.6 33 134-166 23-63 (333) 406 cd03027 GRX_DEP Glutaredoxin ( 26.5 40 0.001 13.4 2.5 54 349-407 10-67 (73) 407 PTZ00071 40S ribosomal protein 26.5 40 0.001 13.4 3.3 51 143-196 39-101 (133) 408 KOG1549 consensus 26.2 40 0.001 13.4 3.8 22 139-161 56-77 (428) 409 PRK05819 deoD purine nucleosid 26.1 40 0.001 13.4 2.6 17 389-405 195-211 (235) 410 TIGR01977 am_tr_V_EF2568 cyste 26.1 40 0.001 13.4 2.9 15 445-459 367-381 (384) 411 PRK12831 putative oxidoreducta 26.0 41 0.001 13.4 2.9 34 338-374 281-314 (464) 412 TIGR00089 TIGR00089 RNA modifi 25.9 41 0.001 13.4 3.4 35 272-306 90-127 (455) 413 PRK06703 flavodoxin; Provision 25.8 41 0.001 13.3 4.3 52 348-406 14-65 (151) 414 TIGR01921 DAP-DH diaminopimela 25.8 41 0.001 13.3 2.0 112 269-406 18-129 (326) 415 PRK05321 nicotinate phosphorib 25.8 41 0.001 13.3 3.0 108 347-463 284-393 (400) 416 PRK05320 rhodanese superfamily 25.8 41 0.001 13.3 2.1 95 287-391 114-218 (257) 417 PRK07812 O-acetylhomoserine am 25.7 41 0.0011 13.3 4.4 50 145-197 96-146 (436) 418 TIGR03385 CoA_CoA_reduc CoA-di 25.6 41 0.0011 13.3 5.0 27 340-373 321-347 (427) 419 TIGR00511 aIF-2BII_fam transla 25.6 37 0.00095 13.6 1.4 24 277-300 116-139 (303) 420 cd03113 CTGs CTP synthetase (C 25.6 41 0.0011 13.3 3.8 41 350-390 187-227 (255) 421 COG0626 MetC Cystathionine bet 25.5 41 0.0011 13.3 2.0 53 145-200 90-143 (396) 422 cd05126 Mth938 Mth938 domain. 25.4 24 0.00062 14.9 0.4 39 333-371 53-93 (117) 423 KOG2012 consensus 25.4 35 0.00088 13.8 1.2 41 341-381 594-636 (1013) 424 cd05560 Xcc1710_like Xcc1710_l 25.3 35 0.00089 13.8 1.2 35 339-373 53-88 (109) 425 PRK10853 hypothetical protein; 25.2 42 0.0011 13.3 4.6 91 352-444 12-113 (118) 426 PRK07525 sulfoacetaldehyde ace 25.1 42 0.0011 13.2 12.0 13 196-208 52-64 (589) 427 TIGR01828 pyru_phos_dikin pyru 25.0 42 0.0011 13.2 2.2 10 340-349 817-826 (920) 428 PRK06714 S-adenosylhomocystein 25.0 26 0.00066 14.7 0.5 26 170-195 48-78 (236) 429 PRK00045 hemA glutamyl-tRNA re 24.9 43 0.0011 13.2 7.3 10 197-206 98-107 (429) 430 PRK05967 cystathionine beta-ly 24.6 43 0.0011 13.2 3.7 47 145-194 91-138 (392) 431 PRK12769 putative oxidoreducta 24.6 43 0.0011 13.2 2.8 53 334-388 464-518 (654) 432 COG4942 Membrane-bound metallo 24.6 35 0.0009 13.8 1.1 34 275-311 328-361 (420) 433 PRK11536 hypothetical protein; 24.5 38 0.00097 13.6 1.3 10 336-345 155-164 (223) 434 cd00957 Transaldolase_TalAB Tr 24.5 43 0.0011 13.2 1.6 22 349-370 133-154 (313) 435 PRK00037 hisS histidyl-tRNA sy 24.5 43 0.0011 13.2 4.8 58 339-398 324-382 (417) 436 PRK05990 precorrin-2 C(20)-met 24.3 44 0.0011 13.1 6.1 18 146-163 87-104 (241) 437 PRK07503 methionine gamma-lyas 24.2 44 0.0011 13.1 4.0 47 145-194 92-139 (403) 438 PRK07631 amidophosphoribosyltr 24.1 44 0.0011 13.1 4.0 51 385-438 343-395 (475) 439 cd02976 NrdH NrdH-redoxin (Nrd 24.1 44 0.0011 13.1 4.7 55 349-408 9-67 (73) 440 pfam00274 Glycolytic Fructose- 24.1 44 0.0011 13.1 4.5 30 193-222 143-182 (348) 441 COG0124 HisS Histidyl-tRNA syn 24.0 44 0.0011 13.1 3.1 60 336-399 333-395 (429) 442 COG0176 MipB Transaldolase [Ca 24.0 41 0.001 13.3 1.4 71 273-377 57-128 (239) 443 PRK07272 amidophosphoribosyltr 23.9 44 0.0011 13.1 4.7 97 339-438 284-397 (484) 444 TIGR02408 ectoine_ThpD ectoine 23.7 29 0.00073 14.4 0.5 53 263-322 126-182 (278) 445 PRK13374 purine nucleoside pho 23.7 45 0.0011 13.1 2.3 16 389-404 196-211 (233) 446 cd03032 ArsC_Spx Arsenate Redu 23.7 45 0.0011 13.1 4.4 94 351-447 11-115 (115) 447 PRK02304 adenine phosphoribosy 23.7 45 0.0011 13.1 5.0 43 335-377 110-157 (174) 448 CHL00149 odpA pyruvate dehydro 23.6 45 0.0011 13.1 3.7 22 226-255 175-196 (343) 449 COG0299 PurN Folate-dependent 23.6 45 0.0011 13.1 1.9 109 278-401 28-144 (200) 450 TIGR01829 AcAcCoA_reduct aceto 23.5 44 0.0011 13.1 1.5 63 349-414 158-221 (244) 451 COG3560 FMR2 Predicted oxidore 23.4 29 0.00074 14.4 0.5 35 277-311 69-104 (200) 452 PRK12906 secA preprotein trans 23.3 45 0.0012 13.0 2.7 61 334-398 436-496 (823) 453 pfam10740 DUF2529 Protein of u 23.2 46 0.0012 13.0 4.3 83 335-417 79-163 (172) 454 PRK10446 ribosomal protein S6 23.2 46 0.0012 13.0 2.1 24 347-373 227-250 (300) 455 COG1440 CelA Phosphotransferas 23.2 46 0.0012 13.0 2.9 48 340-387 48-96 (102) 456 PRK06940 short chain dehydroge 23.1 46 0.0012 13.0 2.0 28 348-375 178-205 (277) 457 cd00948 FBP_aldolase_I_a Fruct 22.9 46 0.0012 13.0 4.5 27 195-221 147-183 (330) 458 PRK13685 hypothetical protein; 22.8 46 0.0012 13.0 4.5 46 353-398 217-275 (326) 459 PRK08248 O-acetylhomoserine am 22.8 46 0.0012 12.9 3.1 48 145-195 91-139 (431) 460 pfam11793 FANCL_C FANCL C-term 22.8 44 0.0011 13.1 1.3 21 262-282 30-50 (70) 461 PRK07608 hypothetical protein; 22.8 46 0.0012 12.9 3.5 41 368-410 260-304 (389) 462 pfam01333 Apocytochr_F_C Apocy 22.7 47 0.0012 12.9 5.7 16 48-63 5-20 (118) 463 pfam00070 Pyr_redox Pyridine n 22.6 47 0.0012 12.9 4.4 38 341-381 2-41 (82) 464 cd01526 RHOD_ThiF Member of th 22.5 47 0.0012 12.9 1.7 26 348-373 80-105 (122) 465 cd00248 Mth938-like Mth938-lik 22.5 37 0.00096 13.6 1.0 35 340-374 54-89 (109) 466 pfam02196 RBD Raf-like Ras-bin 22.5 30 0.00077 14.3 0.5 48 346-397 19-69 (71) 467 PRK13358 protocatechuate 4,5-d 22.3 47 0.0012 12.9 1.9 66 337-417 169-240 (269) 468 PRK11678 putative chaperone; P 22.3 47 0.0012 12.9 2.2 24 439-462 372-395 (450) 469 PRK06111 acetyl-CoA carboxylas 22.2 48 0.0012 12.9 3.8 46 245-309 151-201 (449) 470 pfam06418 CTP_synth_N CTP synt 22.2 48 0.0012 12.9 3.8 48 352-399 189-240 (275) 471 PRK07671 cystathionine beta-ly 22.1 48 0.0012 12.9 3.9 45 145-193 77-122 (377) 472 TIGR02388 rpoC2_cyan DNA-direc 22.1 28 0.00072 14.5 0.2 17 20-36 860-876 (1252) 473 pfam12588 PSDC Phophatidylseri 22.1 48 0.0012 12.9 1.8 41 221-261 47-89 (140) 474 TIGR02624 rhamnu_1P_ald rhamnu 22.1 48 0.0012 12.9 1.9 34 146-185 193-226 (273) 475 PRK08462 biotin carboxylase; V 22.0 48 0.0012 12.8 3.9 76 244-343 152-233 (446) 476 PRK08776 cystathionine gamma-s 21.9 48 0.0012 12.8 4.0 56 334-397 95-152 (405) 477 PRK01506 consensus 21.8 49 0.0012 12.8 5.2 148 317-467 144-314 (317) 478 TIGR03010 sulf_tusC_dsrF sulfu 21.8 49 0.0012 12.8 1.8 34 134-167 8-42 (116) 479 PRK08133 O-succinylhomoserine 21.6 49 0.0012 12.8 3.6 56 334-397 96-153 (391) 480 PRK05714 2-octaprenyl-3-methyl 21.6 49 0.0012 12.8 3.9 38 339-379 3-42 (405) 481 PRK10569 NAD(P)H-dependent FMN 21.5 49 0.0013 12.8 6.3 70 347-422 14-93 (191) 482 PRK05613 O-acetylhomoserine am 21.4 50 0.0013 12.8 5.5 66 334-402 104-196 (437) 483 PRK07364 2-octaprenyl-6-methox 21.3 50 0.0013 12.7 3.1 29 340-371 19-47 (413) 484 pfam00899 ThiF ThiF family. Th 21.3 50 0.0013 12.7 1.7 43 403-452 10-52 (134) 485 PRK07349 amidophosphoribosyltr 21.1 50 0.0013 12.7 5.0 64 384-455 366-431 (495) 486 pfam00437 GSPII_E Type II/IV s 21.1 50 0.0013 12.7 1.8 20 146-165 198-217 (283) 487 TIGR01704 MTA/SAH-Nsdase MTA/S 20.9 42 0.0011 13.2 1.0 14 180-193 61-74 (229) 488 TIGR00337 PyrG CTP synthase; I 20.8 51 0.0013 12.7 2.8 34 354-387 201-234 (571) 489 PRK12438 hypothetical protein; 20.8 51 0.0013 12.7 3.6 99 55-153 862-960 (979) 490 pfam10011 DUF2254 Predicted me 20.8 51 0.0013 12.7 2.9 25 15-39 219-243 (369) 491 PRK08861 cystathionine gamma-s 20.7 51 0.0013 12.7 3.3 58 334-397 88-145 (388) 492 cd05125 Mth938_2P1-like Mth938 20.6 45 0.0011 13.0 1.0 32 340-371 56-88 (114) 493 COG3547 Transposase and inacti 20.6 47 0.0012 12.9 1.1 35 342-377 37-71 (303) 494 PRK10436 hypothetical protein; 20.6 51 0.0013 12.6 1.8 20 146-165 273-292 (461) 495 PRK06767 methionine gamma-lyas 20.5 51 0.0013 12.6 5.3 66 334-402 96-187 (386) 496 KOG2862 consensus 20.5 52 0.0013 12.6 7.0 85 333-420 87-172 (385) 497 PRK13366 protocatechuate 4,5-d 20.3 52 0.0013 12.6 2.0 46 130-188 154-199 (284) 498 PRK06128 oxidoreductase; Provi 20.3 52 0.0013 12.6 2.4 57 336-393 77-135 (300) 499 TIGR00364 TIGR00364 exsB prote 20.2 52 0.0013 12.6 1.5 44 335-378 19-69 (227) 500 TIGR01968 minD_bact septum sit 20.2 52 0.0013 12.6 1.6 44 159-228 2-46 (272) No 1 >PRK11892 pyruvate dehydrogenase subunit beta; Provisional Probab=100.00 E-value=0 Score=1111.98 Aligned_cols=462 Identities=69% Similarity=1.061 Sum_probs=424.1 Q ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 97356678888881157898774178976258985999953753334317778689899823788513269758999437 Q gi|254780673|r 1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 1 M~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) |+++|+||.|+++|+||+|++|+||+||.|+.||+|+||||||||||++|..+|+|.+||+++|++.|+|+++||+|.++ T Consensus 1 m~~~i~mpalsptm~~g~l~kw~~~~gd~v~~gd~~aeietdkatme~ea~deg~~~kilv~~g~~~v~vn~~ia~~~~~ 80 (464) T PRK11892 1 MAIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464) T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEECC T ss_conf 98442137789864577121464468975257866899750656689875067488889866777797557623796125 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 77721122223321234422233223332223322--1000000112333310000000000000012235544311365 Q gi|254780673|r 81 GETALDIDKMLLEKPDVAISPSSKNTTLVFSNEDN--DKVDHQKSKNDIQDSSFAHAPTSSITVREALRDAIAEEMRRDK 158 (467) Q Consensus 81 ge~a~~~~~~~a~~~~aa~aaa~~~~s~~~~~a~~--~a~~~~~a~~~~~~~~~~~~~~~~~TvRea~~~a~~e~m~~d~ 158 (467) |++..+............................. .....+.......+..+..+....+|+|||||+||+|+|++|+ T Consensus 81 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~reAlr~a~~eEM~rD~ 160 (464) T PRK11892 81 GESAADAGAAAAAAPAAAAEAAAPAAAAAEAAAAPAAAAPAAPAVEVAADPEIPAGTEMVTMTVREALRDAMAEEMRRDE 160 (464) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCC T ss_conf 76533233344556555655555555554555554444555554443346566666642034699999999999985099 Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 06999324344588665323647540811101166662789989999887188644566666789999999998788674 Q gi|254780673|r 159 DVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTR 238 (467) Q Consensus 159 ~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~ 238 (467) +||+|||||+.|||+||+|+||++|||++|||||||||++|+|+|+|+|++|+|||+||||+||+++|||||+|++||++ T Consensus 161 ~Vfv~GEdVg~~gG~fkvT~GL~~~FG~~RV~DTPISE~gi~G~aiGaA~~GlRPIvEimf~dF~~~A~DQIiN~AAK~r 240 (464) T PRK11892 161 DVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGVGVGAAMAGLKPIVEFMTFNFAMQAIDQIINSAAKTL 240 (464) T ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHH T ss_conf 88998040011487010342278775830420789995678899999997599847998603168999999998888864 Q ss_pred HHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCC Q ss_conf 21177678887998302445764444332168876322031386652210001055565413783476402123333345 Q gi|254780673|r 239 YMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFE 318 (467) Q Consensus 239 ~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~ 318 (467) ||||||+++|||||+|+|+++++|+|||||+++||+|+|||+|++||+++|+|+||++|||++|||+||||++||+++++ T Consensus 241 ymsgGq~~~PiViR~p~G~g~~~gaqHSQs~e~~fahiPGLkVv~Pstp~DAkGLLkaAIrd~nPVIflE~k~LY~~~~e 320 (464) T PRK11892 241 YMSGGQMGCPIVFRGPNGAAARVGAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIRDPNPVIFLENEILYGQSFE 320 (464) T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCC T ss_conf 04588614777998136666677766655767786217870799518999999999999738998899960210378402 Q ss_pred CCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEC Q ss_conf 33466312144311444316874586025788888888753100467527973300685799999999987198999957 Q gi|254780673|r 319 VPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEE 398 (467) Q Consensus 319 ~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee 398 (467) +|+.++|.+||||++++|+|+|+|||+||.|++.|++||+.|+++||++||||||||+|||+++|++||+||||+|+||| T Consensus 321 VP~~~d~~iPiGkA~V~reG~DvTIVsyG~mv~~aleAAe~La~eGIs~EVIDLRtL~PLD~etI~~SVkKTgRlvVVeE 400 (464) T PRK11892 321 VPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLVTVEE 400 (464) T ss_pred CCCCCCCCCCCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEEC T ss_conf 68754444566405896379978999757269999999999987399789997886788998999999998798999968 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCC Q ss_conf 8876767899999999967764289829971777888889667656089989999999998502 Q gi|254780673|r 399 GYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVESICYK 462 (467) Q Consensus 399 ~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~av~~v~~~ 462 (467) +|.+||+|+||+++|+|+||++||+||+||+++|+|+||+++||+.++|+.++|++++|+|||| T Consensus 401 ~~~~~GvgaEIaA~I~E~aF~~LdAPv~RV~~~D~PiP~a~~LE~~~lP~~~~Iv~Avk~V~y~ 464 (464) T PRK11892 401 GWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPYAANLEKLALPSVAEVVEAVKAVCYR 464 (464) T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCC T ss_conf 9888867999999999987986089848978898798889779977589999999999998549 No 2 >COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Probab=100.00 E-value=0 Score=814.33 Aligned_cols=323 Identities=54% Similarity=0.855 Sum_probs=317.8 Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 00000012235544311365069993243445886653236475408111011666627899899998871886445666 Q gi|254780673|r 139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFM 218 (467) Q Consensus 139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~ 218 (467) .++++||+|+||.++|++|++||+|||||+.+||+|++|+||++|||++|||||||+|++|+|+|+|||+.|+|||+||| T Consensus 1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq 80 (324) T COG0022 1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ 80 (324) T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 95289999999999981299889982352302770120333887708540005765212168899999970896248986 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHH Q ss_conf 66789999999998788674211776788879983024457644443321688763220313866522100010555654 Q gi|254780673|r 219 TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAI 298 (467) Q Consensus 219 ~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai 298 (467) |+||+++|+|||+|++||++|||||++.+|+|+|+|+|++.+.|.|||||+++||+|+|||+|++||||+|+||||++|| T Consensus 81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI 160 (324) T COG0022 81 FADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI 160 (324) T ss_pred ECCHHHHHHHHHHHHHHHHHHHCCCCEECCEEEECCCCCCCCCHHHCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHH T ss_conf 30136999999999999884104896436779974787777744433688899983389836981797577788999982 Q ss_pred HCCCCEEEECCCCCCC-CCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC Q ss_conf 1378347640212333-334533466312144311444316874586025788888888753100467527973300685 Q gi|254780673|r 299 RDPNPVIFLENEILYG-SSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRP 377 (467) Q Consensus 299 ~~~~Pvi~le~~~ly~-~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~P 377 (467) |+||||+||||+.||+ .++++| .++|.+||||++++|+|+|+|||+||.|++.+++||+.|.++||++||||||||+| T Consensus 161 rd~dPViflE~k~lY~~~~~eVP-~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~P 239 (324) T COG0022 161 RDPDPVIFLEHKRLYRSFKGEVP-EEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSP 239 (324) T ss_pred CCCCCEEEEECHHHHCCCCCCCC-CCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 58998799732887565655789-87742215603367448856999851688999999999862698769972434676 Q ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHH Q ss_conf 79999999998719899995788767678999999999677642898299717778888896676560899899999999 Q gi|254780673|r 378 MDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVE 457 (467) Q Consensus 378 ld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~av~ 457 (467) ||+++|++|++||||+|+|||+++++|+|+||++.++|+||++||+|++|++++|+|+||+..||+.++|+.++|+++++ T Consensus 240 lD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~av~ 319 (324) T COG0022 240 LDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAAVK 319 (324) T ss_pred CCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHH T ss_conf 67999999988619689998256567728999999999999751274644347988989746677664799899999999 Q ss_pred HHHCC Q ss_conf 98502 Q gi|254780673|r 458 SICYK 462 (467) Q Consensus 458 ~v~~~ 462 (467) ++++. T Consensus 320 ~v~~~ 324 (324) T COG0022 320 KVLEF 324 (324) T ss_pred HHHHC T ss_conf 99629 No 3 >PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional Probab=100.00 E-value=0 Score=787.14 Aligned_cols=331 Identities=39% Similarity=0.645 Sum_probs=317.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHH Q ss_conf 33310000000000000012235544311365069993243445886653236475408111011666627899899998 Q gi|254780673|r 127 IQDSSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGA 206 (467) Q Consensus 127 ~~~~~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~ 206 (467) ..+.....+.+.++|++||||+||.++|++||+||+|||||+ +||+|++|+||++||||+||||||||||+++|+|+|| T Consensus 22 ~~~~~~~~g~~~~~t~~~Ai~~al~~~m~~d~~v~~~GeDv~-~GG~f~~T~gL~~~fGp~Rv~DtPIsE~~ivG~AvG~ 100 (355) T PTZ00182 22 RFGSEESSGNTKKMNLFQAINSALDIALSKDPKTVLFGEDVA-FGGVFRCSLGLLKKYGEQRVFNTPLCEQGIVGFAIGL 100 (355) T ss_pred CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHH T ss_conf 999877788822657999999999999965998899847736-6766664025999858850031785588899999999 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 87188644566666789999999998788674211776788-87998302445764444332168876322031386652 Q gi|254780673|r 207 SFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITT-SIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPY 285 (467) Q Consensus 207 A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~-p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~ 285 (467) |++|+|||+|+||.||+++|||||+|++||++||+||++++ |+|+|+|.|+++++|+|||||+++||+|+|||+|++|| T Consensus 101 A~~G~rPVvei~f~dFl~~A~DQIvn~aAk~~~~sgg~~~~~plviR~p~G~~~~~g~~HSqs~ea~f~~iPGLkVv~Ps 180 (355) T PTZ00182 101 AAVGWTAIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGKLTIRSTWGAVGHGGLYHSQSPEAYFAHCAGLKIVVPS 180 (355) T ss_pred HHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECC T ss_conf 97699359997568789999999999987775003870302428995378887778861017969998268997899349 Q ss_pred CCHHCCCHHHHHHHCCCCEEEECCCCCCCCC-CCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCC- Q ss_conf 2100010555654137834764021233333-45334663121443114443168745860257888888887531004- Q gi|254780673|r 286 TASDAKGLLKAAIRDPNPVIFLENEILYGSS-FEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKN- 363 (467) Q Consensus 286 ~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~-~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~- 363 (467) |++|+|+||++|+++++||+|+|||+||+.. .++|. ++|.+||||++++|+|+|+|||+||.|+++|++||+.|+++ T Consensus 181 ~p~DAkgLl~sAi~d~~PVif~E~k~Ly~~~~~~vp~-~~~~iplGka~i~r~G~DvTIVa~G~mv~~al~AA~~L~~e~ 259 (355) T PTZ00182 181 DPYQAKGLLLACIRDPNPVIFFEPKILYRSAVEEVPP-DDYTLELGKAEVVKEGKDVTMVGYGSQVGVMKKAAELAEKEH 259 (355) T ss_pred CHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCC-CCCCCCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHHCC T ss_conf 9999999998761079858999654540567667885-445444666799961794799996568999999999997502 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHH Q ss_conf 67527973300685799999999987198999957887676789999999996776428982997177788888966765 Q gi|254780673|r 364 GIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEK 443 (467) Q Consensus 364 gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~ 443 (467) ||++||||+|||+|||+++|++||+||||+|||||+|++||||+||+++|.|+||++||+||+||+++|+|+||+ ||+ T Consensus 260 GIs~EVIDlRtL~PlD~e~I~~SV~KTgrllvVeE~~~~~G~gsEI~a~i~E~~f~~L~ap~~Rv~~~d~P~P~~--lE~ 337 (355) T PTZ00182 260 GISVEVIDLQTILPWDRETVADSVKKTGRVIVTHEAPKTSGMGAEIAATIQERCFLSLEAPIKRVCGYDTPFPLV--HEP 337 (355) T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHH--HHH T ss_conf 997799954746899999999999987989999889988868999999999986875079868978898889866--786 Q ss_pred HCCCCHHHHHHHHHHHHC Q ss_conf 608998999999999850 Q gi|254780673|r 444 LALPNVDEIIESVESICY 461 (467) Q Consensus 444 ~~~p~~~~I~~av~~v~~ 461 (467) .|+|+.++|+++++++++ T Consensus 338 ~~~P~~~~I~~av~~ll~ 355 (355) T PTZ00182 338 LYLPDELKLLEAIKQVVN 355 (355) T ss_pred HHCCCHHHHHHHHHHHHC T ss_conf 719998999999999749 No 4 >PRK09212 pyruvate dehydrogenase subunit beta; Validated Probab=100.00 E-value=0 Score=764.38 Aligned_cols=325 Identities=70% Similarity=1.127 Sum_probs=319.5 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 00000001223554431136506999324344588665323647540811101166662789989999887188644566 Q gi|254780673|r 138 SSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEF 217 (467) Q Consensus 138 ~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~ 217 (467) .++|+|||+|+||.++|++||+||+|||||+++||+|++|+||++||||+||||||||||+|+|+|+|||++|+|||+++ T Consensus 2 ~~~~~~~ai~~al~~~~~~d~~v~~~geDv~~~~G~f~~t~gl~~~fgp~R~~d~gIaEq~~vg~A~GlA~~G~~Piv~~ 81 (327) T PRK09212 2 AQLTVREALRDAMREEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF 81 (327) T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 82229999999999999559899998277664678035416899985875031677448999999998986799448997 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHH Q ss_conf 66678999999999878867421177678887998302445764444332168876322031386652210001055565 Q gi|254780673|r 218 MTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAA 297 (467) Q Consensus 218 ~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~a 297 (467) |+++|+++|||||+|++||++||+||++++|+++|+|.|.++++|+||||++++||+|||||+|++|+|+.|+++||+++ T Consensus 82 ~~~~f~~ra~dQI~n~~ak~~~~~gg~~~vpvv~r~~~g~~~~~g~~Hs~~~~a~~~~iPgl~Vv~Ps~~~d~~~ll~~a 161 (327) T PRK09212 82 MTFNFAMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYASWYAHIPGLKVVAPYFAADCKGLLKTA 161 (327) T ss_pred EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCHHHHHHHHHHH T ss_conf 55667778999999988875241278523018998177246787743331568896289998899648877889999998 Q ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC Q ss_conf 41378347640212333334533466312144311444316874586025788888888753100467527973300685 Q gi|254780673|r 298 IRDPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRP 377 (467) Q Consensus 298 i~~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~P 377 (467) +++++||+|+||+++|+.+.++|+ +++.+|+||++++|+|+|+|||+||.|+++|++||+.|+++||+++|||+||||| T Consensus 162 ~~~~~Pvi~~e~~~ly~~~~~v~~-~~~~~~iGKa~vlreG~DvTIva~G~mv~~al~AAe~L~~~GI~~eVIdl~tlkP 240 (327) T PRK09212 162 IRDNNPVIFLENEILYGHSHEVPD-EEESIPFGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRP 240 (327) T ss_pred HHCCCCEEEEECCCCCCCCCCCCC-CCCCCCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 765998499824434687656776-5302337768999857974999864578999999999997599867885212789 Q ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHH Q ss_conf 79999999998719899995788767678999999999677642898299717778888896676560899899999999 Q gi|254780673|r 378 MDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVE 457 (467) Q Consensus 378 ld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~av~ 457 (467) ||+++|++|++||+|+|||||++..||+||+|++.++|+||++|++|++||+++|+|+||+++||+.|||++++|+++++ T Consensus 241 lD~e~I~~sv~kT~~lv~veE~~~~gG~Gsevaa~l~e~~f~~L~~p~~rv~~~d~p~P~a~~LE~~~~p~~~~I~~av~ 320 (327) T PRK09212 241 LDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYAANLEKLALPSEEDIIEAVK 320 (327) T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHH T ss_conf 99999999998619789996798788789999999999758645898679688980898997689884989999999999 Q ss_pred HHHCCC Q ss_conf 985020 Q gi|254780673|r 458 SICYKR 463 (467) Q Consensus 458 ~v~~~~ 463 (467) ++|+|| T Consensus 321 ~~l~~~ 326 (327) T PRK09212 321 KVCYRS 326 (327) T ss_pred HHHCCC T ss_conf 986657 No 5 >KOG0524 consensus Probab=100.00 E-value=0 Score=761.67 Aligned_cols=325 Identities=61% Similarity=1.003 Sum_probs=320.8 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH Q ss_conf 00000000122355443113650699932434458866532364754081110116666278998999988718864456 Q gi|254780673|r 137 TSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE 216 (467) Q Consensus 137 ~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~ 216 (467) .+.+|+|||+|.||.|+|+||++||+|||+|+.|+|+||+|+||++|||+.||+||||+|.+++|+|+|+|+.|+||||| T Consensus 32 ~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~e 111 (359) T KOG0524 32 AKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICE 111 (359) T ss_pred CEEEEHHHHHHHHHHHHHCCCCCEEEECHHHHHCCCEEEHHHHHHHHCCCCEEECCCCHHCCCCHHHHHHHHHCCCHHHH T ss_conf 20254999999888987555984798222354217700020457886088453357421204311557677707611454 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHH Q ss_conf 66667899999999987886742117767888799830244576444433216887632203138665221000105556 Q gi|254780673|r 217 FMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKA 296 (467) Q Consensus 217 ~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ 296 (467) ||+|+|.|||+|||+|++||++|||||++++|+|||||+|.+.+.|+||||+|.+||.+||||+|++|+++.|+||||++ T Consensus 112 fMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~f~~wy~siPGlkvvapysaedakGLlKa 191 (359) T KOG0524 112 FMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQDFASWYGSIPGLKVVAPYSAEDAKGLLKA 191 (359) T ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEECCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHH T ss_conf 40001489999999988877750037834025799689975430556651046787555998358635774555568888 Q ss_pred HHHCCCCEEEECCCCCCCCCCCCCCC---CCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 54137834764021233333453346---631214431144431687458602578888888875310046752797330 Q gi|254780673|r 297 AIRDPNPVIFLENEILYGSSFEVPMV---DDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLR 373 (467) Q Consensus 297 ai~~~~Pvi~le~~~ly~~~~~~p~~---~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r 373 (467) |||++|||+||||.+||+.++++++. +||.+|+||+++.|+|+|+||++|+.|+..|++||+.|.++|++||||||| T Consensus 192 AIRd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVInlr 271 (359) T KOG0524 192 AIRDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVINLR 271 (359) T ss_pred HCCCCCCEEEEECHHHCCCCCCCCHHHCCCCEEEECCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 60589976998411012887568734457550535450236615884699985025899999999998669880367410 Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHH Q ss_conf 06857999999999871989999578876767899999999967764289829971777888889667656089989999 Q gi|254780673|r 374 TIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEII 453 (467) Q Consensus 374 ~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~ 453 (467) +|+|||.++|.+|++||+|+++||++|..+|+|+||.+.|+|++|+|||+|++|+++.|+|+||+..||+..+|+..+|+ T Consensus 272 SirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~~lE~~a~p~~~~iV 351 (359) T KOG0524 272 SIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAKTLEDWAVPQPADIV 351 (359) T ss_pred CCCCCCHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHCCCCHHHHH T ss_conf 24765589999887650538998345666660399999998877755125355322788898530006762289879999 Q ss_pred HHHHHHHC Q ss_conf 99999850 Q gi|254780673|r 454 ESVESICY 461 (467) Q Consensus 454 ~av~~v~~ 461 (467) .|++++|+ T Consensus 352 ~Avk~~~~ 359 (359) T KOG0524 352 TAVKKLCN 359 (359) T ss_pred HHHHHHHC T ss_conf 99998519 No 6 >CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated Probab=100.00 E-value=0 Score=755.11 Aligned_cols=323 Identities=41% Similarity=0.701 Sum_probs=316.6 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 00000001223554431136506999324344588665323647540811101166662789989999887188644566 Q gi|254780673|r 138 SSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEF 217 (467) Q Consensus 138 ~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~ 217 (467) ..++++||+|+||.++|++||+||+|||||+++||+|++|+||++|||++||||||||||+++|+|+|||++|+|||+++ T Consensus 2 ~~~~~~~ai~~al~~~m~~d~~v~~~GeDv~~~gg~f~~t~gl~~kfg~~Rv~dtpIaE~~~vG~A~GlA~~G~rPiv~~ 81 (326) T CHL00144 2 SENFLFEALREAIDEEMARDPRVAVIGEDVGHYGGSYKVTKDLHPKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPVVEG 81 (326) T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEE T ss_conf 63379999999999999759988998377675678067506799873855100677357889999998874799799997 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHH Q ss_conf 66678999999999878867421177678887998302445764444332168876322031386652210001055565 Q gi|254780673|r 218 MTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAA 297 (467) Q Consensus 218 ~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~a 297 (467) |+.+|+++|||||+|++||++||+||++++|+++|+|+|.++++|+||||++++||+|||||+|++|+|+.|+++||++| T Consensus 82 ~~~~F~~~a~dQi~n~aa~~~~~~gg~~~vplvir~~~g~g~~~g~~Hs~~~~a~~~~iPgl~Vv~Ps~~~da~~ll~~a 161 (326) T CHL00144 82 MNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQAVPGLQIVACSTPYNAKGLLKSA 161 (326) T ss_pred EHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHH T ss_conf 46778899999999998898603478613579998477767887541244568898338995899569878889999999 Q ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC Q ss_conf 41378347640212333334533466312144311444316874586025788888888753100467527973300685 Q gi|254780673|r 298 IRDPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRP 377 (467) Q Consensus 298 i~~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~P 377 (467) +++++||+|+||+++|+.+.++|+ ++|.+|+||++++|+|+|+|||+||.|++.|++||+.|+++||+|+|||+|||+| T Consensus 162 i~~~~Pv~~~e~~~ly~~~~~vp~-~~~~~~~Gka~v~r~G~DvTIVa~G~mv~~al~Aae~L~~~gI~~eVIDlrtl~P 240 (326) T CHL00144 162 IRSDNPVLFFEHVLLYNLKEEIPD-GEYLLPLEKAELVRDGEDITILTYSRMRHHVIQAVKLLVTKGYDPEVIDLISLKP 240 (326) T ss_pred HHCCCCEEEEECCCCCCCCCCCCC-CCCCCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 972898189953455787644776-5566546768999727987999306779999999999997799768986045799 Q ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHH Q ss_conf 79999999998719899995788767678999999999677642898299717778888896676560899899999999 Q gi|254780673|r 378 MDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVE 457 (467) Q Consensus 378 ld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~av~ 457 (467) ||+++|++|++||+|+|||||+|..||||+||+++|+|++|++|++|++||+.+|+|+||++.||+.++|++++|++++| T Consensus 241 lD~e~I~~sv~kT~rlv~veE~~~~gG~Gsei~a~i~e~~f~~l~~p~~Ri~~~d~p~P~s~~lE~~~~p~~~~I~~av~ 320 (326) T CHL00144 241 LDMTTISTSIKKTHKVLIVEECMKTGGIGAELLALINENLFDELDAPIFRLSSQDVPTPYNGSLEEATVIQPEQIIEAVE 320 (326) T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHH T ss_conf 99999999998549899997699889789999999999758655999789688980898997799875999999999999 Q ss_pred HHHC Q ss_conf 9850 Q gi|254780673|r 458 SICY 461 (467) Q Consensus 458 ~v~~ 461 (467) ++++ T Consensus 321 ~l~~ 324 (326) T CHL00144 321 QITN 324 (326) T ss_pred HHHC T ss_conf 9862 No 7 >KOG0525 consensus Probab=100.00 E-value=0 Score=571.99 Aligned_cols=324 Identities=39% Similarity=0.666 Sum_probs=307.1 Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 00000000000122355443113650699932434458866532364754081110116666278998999988718864 Q gi|254780673|r 134 HAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKP 213 (467) Q Consensus 134 ~~~~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~P 213 (467) .+....+.+-+++|.||.-.|+.||+.++|||||+ +||+|++|.||.+|||.+||||||++||+|+|+++|+|..|-+. T Consensus 35 ~ge~~~mnl~qsvn~al~ial~tdp~a~vfgedv~-fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~a 113 (362) T KOG0525 35 AGEKKKMNLYQSVNQALHIALETDPRAVVFGEDVA-FGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATA 113 (362) T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-CCEEEEEECCHHHHHCCCCCCCCCHHHCCCCEECHHHHHCCCCE T ss_conf 55555602999999999877514983278324542-24079851006777375630267202215420013125406615 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCC Q ss_conf 45666667899999999987886742117767888-79983024457644443321688763220313866522100010 Q gi|254780673|r 214 IVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTS-IVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKG 292 (467) Q Consensus 214 iv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p-~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ 292 (467) |+|+||.||+..|||||+|+|||++|+||.|+++. +++|.|-|+.+..|-+||||.+++|.|+||++|+.|.+|.++|+ T Consensus 114 iaeiqfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprsp~qakg 193 (362) T KOG0525 114 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRSPRQAKG 193 (362) T ss_pred EEEEEECCCCCHHHHHHHHHHHHHEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHEECCCCCEEEECCCCCHHHC T ss_conf 88885022122558999878776252357844567657745544245553015688235300489836982489504303 Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCC-CCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHH-HCCCCCEEEE Q ss_conf 5556541378347640212333334-5334663121443114443168745860257888888887531-0046752797 Q gi|254780673|r 293 LLKAAIRDPNPVIFLENEILYGSSF-EVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIEL-EKNGIDAELI 370 (467) Q Consensus 293 ll~~ai~~~~Pvi~le~~~ly~~~~-~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L-~~~gi~~~vi 370 (467) ||.++||+|||++|+|+||||++.. ++|. +||.+|++.++++|+|+|+|+++||..++..+++|-.- ++.||+|||| T Consensus 194 lllscirdpnp~iffepk~lyr~a~edvp~-~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevi 272 (362) T KOG0525 194 LLLSCIRDPNPCIFFEPKILYRQAVEDVPE-GDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVI 272 (362) T ss_pred EEEEECCCCCCEEEECHHHHHHHHHHHCCC-CCCCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 142010699965784528999876630787-7733432177775237843899711046899999876677529846997 Q ss_pred ECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHH Q ss_conf 33006857999999999871989999578876767899999999967764289829971777888889667656089989 Q gi|254780673|r 371 DLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVD 450 (467) Q Consensus 371 d~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~ 450 (467) ||++|-|+|.+++.+||+|||||++-+|...+||||+||++.+.|+||.+|.+|+-|+|+.|+|.|.- .|-+|+|++. T Consensus 273 dlkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~v--fepfy~ptk~ 350 (362) T KOG0525 273 DLKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPHV--FEPFYMPTKN 350 (362) T ss_pred EEECCCCCCHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC--CCCCCCCCHH T ss_conf 30001575388899988741617886347756752188899999988760457366640689988523--4563267276 Q ss_pred HHHHHHHHHHC Q ss_conf 99999999850 Q gi|254780673|r 451 EIIESVESICY 461 (467) Q Consensus 451 ~I~~av~~v~~ 461 (467) +|++|+|+..+ T Consensus 351 ki~daik~~vn 361 (362) T KOG0525 351 KILDAIKKTVN 361 (362) T ss_pred HHHHHHHHHCC T ss_conf 89999997616 No 8 >COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Probab=100.00 E-value=0 Score=404.93 Aligned_cols=300 Identities=27% Similarity=0.377 Sum_probs=258.7 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 00000001223554431136506999324344588665323647540811101166662789989999887188644566 Q gi|254780673|r 138 SSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEF 217 (467) Q Consensus 138 ~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~ 217 (467) ...++|+++.+.+.++-++|++++++--|..++.. |..|.++| |+|+||+||+||+|+|+|+|||++|++|++. T Consensus 5 ~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~----~~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~- 78 (312) T COG3958 5 NTESLRKVYGETLAELGRKNSDIVVLDADLSSSTK----TGYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVS- 78 (312) T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----HHHHHHHC-CHHHEECCHHHHHHHHHHHHHHHCCCCCEEE- T ss_conf 20678999999999987338997999645313411----05788867-5451442467888999998887448874364- Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-CCCC-CCCCHHH-HHHHHHHHHHHCCCEEEEEECCHHCCCH Q ss_conf 6667899-999999987886742117767888799830-2445-7644443-3216887632203138665221000105 Q gi|254780673|r 218 MTFNFAM-QAIDQIINSAAKTRYMSGGQITTSIVFRGP-NGAA-ARVAAQH-SQCYAAWYSHVPGLKVVIPYTASDAKGL 293 (467) Q Consensus 218 ~~~~f~~-~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p-~G~~-~~~g~~H-s~~~~~~~~~iPgl~V~~P~~~~d~~~l 293 (467) -|.-|++ ||||||.|+.+- .++|+.+.+. .|.. +.+|++| +-...++|+.+|||+|+.|+|+.+.+.+ T Consensus 79 tfa~F~s~Ra~EQir~~iay--------~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i 150 (312) T COG3958 79 TFAAFLSRRAWEQIRNSIAY--------NNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAI 150 (312) T ss_pred CHHHHHHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHH T ss_conf 15899877799999998610--------2697389992587425888864116789999860788558704858999999 Q ss_pred HHHHHHCCCCEEEECCCCCCCC-CCCCCCCC-CEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 5565413783476402123333-34533466-312144311444316874586025788888888753100467527973 Q gi|254780673|r 294 LKAAIRDPNPVIFLENEILYGS-SFEVPMVD-DLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELID 371 (467) Q Consensus 294 l~~ai~~~~Pvi~le~~~ly~~-~~~~p~~~-~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid 371 (467) +.++.++++|+++ +.++ +++++..+ +|.+.+||++++|+|+|+|||+.|.|+..|++||+.|+++||++.||| T Consensus 151 ~~~~~~~~GP~Y~-----Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~ 225 (312) T COG3958 151 LDQIADYKGPVYM-----RLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVIN 225 (312) T ss_pred HHHHHHCCCCEEE-----EECCCCCCCEECCCCCEEECCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 9999860797799-----80577888503378725733634676417726999517166999999999986698879986 Q ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC--CCHHHHHHCCCCH Q ss_conf 30068579999999998719899995788767678999999999677642898299717778888--8966765608998 Q gi|254780673|r 372 LRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMP--YAANLEKLALPNV 449 (467) Q Consensus 372 ~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P--~~~~le~~~~p~~ 449 (467) |.||||+|.++|++..+||+++||+|||...||+||.|++.++|++ ..|.+||+.+|+.-- .+..|-++|-.+. T Consensus 226 m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~ 301 (312) T COG3958 226 MFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDP 301 (312) T ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEECCEEECCHHHHHHHHHHHCC----CCCEEEECCCCHHCCCCCHHHHHHHHCCCH T ss_conf 4766778789999987425838998633223562699999998619----963688327731212235699999819999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999985 Q gi|254780673|r 450 DEIIESVESIC 460 (467) Q Consensus 450 ~~I~~av~~v~ 460 (467) ++|++.+++.| T Consensus 302 ~~I~~~v~~~~ 312 (312) T COG3958 302 ESIAARVLELL 312 (312) T ss_pred HHHHHHHHHHC T ss_conf 99999999659 No 9 >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Probab=100.00 E-value=0 Score=387.47 Aligned_cols=300 Identities=22% Similarity=0.358 Sum_probs=258.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH-HH Q ss_conf 00000122355443113650699932434458866532364754081110116666278998999988718864456-66 Q gi|254780673|r 140 ITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE-FM 218 (467) Q Consensus 140 ~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~-~~ 218 (467) .+.-+...+.|.+.+++|++++.+---.. +| ++. ..|.++| |+|+||++|+||+.+.+|+|||+.|+||||. |+ T Consensus 316 ~sys~vf~~~L~~~a~~d~~ivaITaAM~--~g-tGL-~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYS 390 (627) T COG1154 316 PSYTKVFGDTLCELAAKDEKIVAITAAMP--EG-TGL-VKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYS 390 (627) T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCC--CC-CCH-HHHHHHC-CHHHEEHHHHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 88789999999999841897599835777--88-776-9998858-4533302356888999999998579998899923 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE---EEECCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCHH Q ss_conf 667899999999987886742117767888799---830244576444433216-8876322031386652210001055 Q gi|254780673|r 219 TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF---RGPNGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGLL 294 (467) Q Consensus 219 ~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~---r~p~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~ll 294 (467) | |+.|||||++|+.|. +++|++| |+ |..+.+|++|...| .||+++||||+|++|+|..+++.|| T Consensus 391 T--FLQRAYDQliHDvai--------qnLPV~faIDRA--GivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml 458 (627) T COG1154 391 T--FLQRAYDQLIHDVAI--------QNLPVTFAIDRA--GIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQML 458 (627) T ss_pred H--HHHHHHHHHHHHHHH--------CCCCEEEEEECC--CCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHH T ss_conf 7--787778889999886--------069859998467--6458999865518889987348985786679999999999 Q ss_pred HHHHHCC-CCEEEECCCCCCCCC--CCCCCCC-CEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 5654137-834764021233333--4533466-31214431144431687458602578888888875310046752797 Q gi|254780673|r 295 KAAIRDP-NPVIFLENEILYGSS--FEVPMVD-DLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELI 370 (467) Q Consensus 295 ~~ai~~~-~Pvi~le~~~ly~~~--~~~p~~~-~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vi 370 (467) .+++..+ +|+. ++|.+. ..++... -..+++||++++|+|+|+.|+++|.|+..|+++|+.|.+.||+|+|| T Consensus 459 ~ta~~~~~gP~A-----iRyPrg~~~~~~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVv 533 (627) T COG1154 459 YTALAQDDGPVA-----IRYPRGNGVGVILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVV 533 (627) T ss_pred HHHHHCCCCCEE-----EEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 999864788748-----994688888877665555134653688725880899944222689999999998639873788 Q ss_pred ECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCH--HHHHHCCCC Q ss_conf 330068579999999998719899995788767678999999999677642898299717778888896--676560899 Q gi|254780673|r 371 DLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAA--NLEKLALPN 448 (467) Q Consensus 371 d~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~--~le~~~~p~ 448 (467) |+||+||||.+.+.+..+++..+||+||+...|||||.|++.+.++++ ..|+.+++.+|..+|.+. .+.+.+-.+ T Consensus 534 d~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gLd 610 (627) T COG1154 534 DPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGLD 610 (627) T ss_pred CCEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCC---CCCEEEECCCHHHHCCCCHHHHHHHCCCC T ss_conf 671267779999999986568699996373146378999999996499---87337713876764369999999883999 Q ss_pred HHHHHHHHHHHHCCCC Q ss_conf 8999999999850200 Q gi|254780673|r 449 VDEIIESVESICYKRK 464 (467) Q Consensus 449 ~~~I~~av~~v~~~~~ 464 (467) .+.|++.+.+.+..++ T Consensus 611 ~~~i~~~i~~~l~~~~ 626 (627) T COG1154 611 AEGIARRILEWLKARS 626 (627) T ss_pred HHHHHHHHHHHHHHCC T ss_conf 8999999999875406 No 10 >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Probab=100.00 E-value=0 Score=375.40 Aligned_cols=301 Identities=22% Similarity=0.350 Sum_probs=251.1 Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH-H Q ss_conf 000000122355443113650699932434458866532364754081110116666278998999988718864456-6 Q gi|254780673|r 139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE-F 217 (467) Q Consensus 139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~-~ 217 (467) ..+..++..++|.+.+++|++++.+--|... |. + ...|.++| |+|+||+||+||+++++|+|||+.|+||++. | T Consensus 268 ~~~~~~~f~~~L~~l~~~~~~iv~itaa~~~--~t-~-l~~f~~~~-P~R~~~~GIaEqhav~~aaGlA~~G~~Pf~~~~ 342 (576) T PRK05444 268 KPSYTKVFGETLCELAEKDPKIVAITAAMPE--GT-G-LDEFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIY 342 (576) T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEHHHCCC--CC-C-CCHHHHHC-CCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 5069999999999998743020030542147--86-6-44367758-763411574577799997458656998668882 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-CCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCHHH Q ss_conf 6667899999999987886742117767888799830-244576444433216-88763220313866522100010555 Q gi|254780673|r 218 MTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP-NGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGLLK 295 (467) Q Consensus 218 ~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p-~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~ll~ 295 (467) . .|+.||||||+|++|. +++||+|.+- .|..+.+||||..-. .+++++||||+|+.|+|+.|++.+++ T Consensus 343 s--tFl~Ra~dQi~~d~al--------~~l~V~~v~d~~GlvGeDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~~~~ 412 (576) T PRK05444 343 S--TFLQRAYDQVIHDVAL--------QNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLY 412 (576) T ss_pred C--HHHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHHHH T ss_conf 1--2877769999876541--------27976899607866789985100379999852699818996299999999999 Q ss_pred HHHHC-CCCEEEECCCCCCCCC--CCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 65413-7834764021233333--45334663121443114443168745860257888888887531004675279733 Q gi|254780673|r 296 AAIRD-PNPVIFLENEILYGSS--FEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDL 372 (467) Q Consensus 296 ~ai~~-~~Pvi~le~~~ly~~~--~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~ 372 (467) .|++. ++|+++ +|.|. ..++..+...+++||+.++|+|+|++||++|+++..|++|+++|+++||+++|||+ T Consensus 413 ~Al~~~~gP~~i-----rl~R~~~~~~~~~~~~~~~~Gk~~vl~~G~dv~IiatGs~v~~Al~Aa~~L~~~Gi~~~VVs~ 487 (576) T PRK05444 413 TALAYDDGPTAI-----RYPRGSGVGVELPELEPLPIGKGEVLREGSDVAILAFGTMLAEALEAAERLAAEGISATVVDA 487 (576) T ss_pred HHHHCCCCCEEE-----EECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 998578998899-----942788888787765434465089996289789995387999999999999856998799955 Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHCCCCHH Q ss_conf 006857999999999871989999578876767899999999967764289829971777888889--667656089989 Q gi|254780673|r 373 RTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYA--ANLEKLALPNVD 450 (467) Q Consensus 373 r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~--~~le~~~~p~~~ 450 (467) +|+||||.+.+.+.+++++++||+||++..||+|+.|++.+.+++.. -..++.+++.+|....++ ..|-+.|-.+++ T Consensus 488 ~~ikPlD~e~l~~~~~~~~~ivtvEeh~~~GGlGs~v~e~l~~~g~~-~~~~~~~iGi~D~F~~sG~~~~L~~~~Gl~~e 566 (576) T PRK05444 488 RFVKPLDEELLLELAAKHELLVTVEENAIMGGFGSAVLEFLAEHGLL-KPVKVLNLGLPDEFIDHGSREELLAELGLDAE 566 (576) T ss_pred CCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCCCCHHHHHHHHCCCHH T ss_conf 87788799999999954897999938975765899999999975997-79746999848836688999999999693999 Q ss_pred HHHHHHHHHH Q ss_conf 9999999985 Q gi|254780673|r 451 EIIESVESIC 460 (467) Q Consensus 451 ~I~~av~~v~ 460 (467) .|+++|++.+ T Consensus 567 ~I~~kI~~~L 576 (576) T PRK05444 567 GIARRILAWL 576 (576) T ss_pred HHHHHHHHHC T ss_conf 9999999659 No 11 >cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain Probab=100.00 E-value=0 Score=393.82 Aligned_cols=167 Identities=59% Similarity=0.992 Sum_probs=164.7 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 01223554431136506999324344588665323647540811101166662789989999887188644566666789 Q gi|254780673|r 144 EALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFA 223 (467) Q Consensus 144 ea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~ 223 (467) ||+|+||.|+|++||++++|||||+++||+|++|+||++||||+||||+||+||+++|+|+|||++|+|||+++++.+|+ T Consensus 1 eAi~~al~~~~~~d~~v~~~g~dv~~~~g~~~~t~gl~~~fgp~R~~d~gIaE~~~vg~a~GlAl~G~~Pvv~~~~~~Fl 80 (167) T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFA 80 (167) T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEHHHH T ss_conf 97999999999769899999578374778057747999985766323799688999999999998599379886225554 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCC Q ss_conf 99999999878867421177678887998302445764444332168876322031386652210001055565413783 Q gi|254780673|r 224 MQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNP 303 (467) Q Consensus 224 ~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~P 303 (467) ++|+|||+|+++|++|||+|++++|+++|++.|+++++|++|||++++||++||||+|++|+|+.|+++||++|+++++| T Consensus 81 ~~a~dQi~n~~a~~~~~s~g~~~~pvvir~~~g~~~~~g~~Hs~~~~a~~~~iPgl~V~~Ps~~~d~~~ll~~a~~~~~P 160 (167) T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDDP 160 (167) T ss_pred HHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCC T ss_conf 00599999775676120389405888999606677674530036879998079996899729999999999999839997 Q ss_pred EEEECCC Q ss_conf 4764021 Q gi|254780673|r 304 VIFLENE 310 (467) Q Consensus 304 vi~le~~ 310 (467) |+|+||| T Consensus 161 v~~~E~k 167 (167) T cd07036 161 VIFLEHK 167 (167) T ss_pred EEEEECC T ss_conf 8999339 No 12 >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Probab=100.00 E-value=0 Score=364.61 Aligned_cols=298 Identities=19% Similarity=0.245 Sum_probs=249.6 Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 00000012235544311365069993243445886653236475408111011666627899899998871886445666 Q gi|254780673|r 139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFM 218 (467) Q Consensus 139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~ 218 (467) ..+..++..+++.+.++.|++++.+..|... .++ ...+.++| |+|+||+||+||+|+++|+|||+.|++|++. . T Consensus 277 ~~~~~~~~~~~l~~~~~~~~~ivai~a~~~~---~~g-l~~f~~~~-P~R~i~~GIaEq~mv~~a~GlA~~G~~P~~~-~ 350 (581) T PRK12315 277 GESYSSVVLDYLLKKIEEGKPVVAINAAIPG---VFG-LKEFRKKY-PDRYVDVGIAEQHSVAFASGMAAAGARPVIF-V 350 (581) T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECCCCCC---CCC-CCHHHHHC-CCCEEECCHHHHHHHHHHHHHHHCCCEEEEE-E T ss_conf 5698999999999998746441542135787---657-53132418-5016751608889999987897579964688-8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHH-HHHHHHHHCCCEEEEEECCHHCCCHHHHH Q ss_conf 66789999999998788674211776788879983024457644443321-68876322031386652210001055565 Q gi|254780673|r 219 TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQC-YAAWYSHVPGLKVVIPYTASDAKGLLKAA 297 (467) Q Consensus 219 ~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~-~~~~~~~iPgl~V~~P~~~~d~~~ll~~a 297 (467) |..|+.||||||++++|- +++|+++..-.+..++.||||..- ..++|+.||||+|++|+|+.+++.+++.| T Consensus 351 fstFl~ra~dqi~~dial--------~~lpv~~~~~~~~igedGpTHq~iedia~lR~iPN~~V~~PaD~~E~~~~~~~A 422 (581) T PRK12315 351 NSTFLQRAYDQLSHDLAI--------NNNPAVMIVFGGSISGNSVTHQGSFDIAMISNIPNLVYLAPTSKEELIAMLEWA 422 (581) T ss_pred ECHHHHHHHHHHHHHHHH--------HCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH T ss_conf 442331468899899998--------369989999617778999875147788997256883899319999999999999 Q ss_pred HH-CCCCEEEECCCCCCCCCCCCCCC--CCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEECC Q ss_conf 41-37834764021233333453346--63121443114443168745860257888888887531004-6752797330 Q gi|254780673|r 298 IR-DPNPVIFLENEILYGSSFEVPMV--DDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKN-GIDAELIDLR 373 (467) Q Consensus 298 i~-~~~Pvi~le~~~ly~~~~~~p~~--~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid~r 373 (467) +. .++|+++ +|.+. .+|.. .+..+..|+++++++|+|++|+++|+|+..|++|++.|+++ ||+++|||+| T Consensus 423 l~~~~gP~~i-----R~pr~-~~~~~~~~~~~~~~g~~~v~~~G~dv~Iia~Gs~v~~A~~aa~~L~~~~gI~~~Vi~~~ 496 (581) T PRK12315 423 LTQHEHPVAI-----RVPEH-VLESGPTVDTDYSTLNYEVAKAGEKVAILALGDFYELGEKVAKKLKEKLGIDATLINPK 496 (581) T ss_pred HHCCCCCEEE-----EECCC-CCCCCCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 9716995899-----93787-67778765555554418997558988999860778999999999875129987999577 Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHCCCCHHH Q ss_conf 06857999999999871989999578876767899999999967764289829971777888889--6676560899899 Q gi|254780673|r 374 TIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYA--ANLEKLALPNVDE 451 (467) Q Consensus 374 ~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~--~~le~~~~p~~~~ 451 (467) |+||||.+++.+..++++.+||+||++..||||+.|++.+.+++ .++.+++.+|...+.+ ..|-++|-.+++. T Consensus 497 ~vkPlD~~~l~~~~~~~~~ivtvEeh~~~GGlGs~v~~~l~~~~-----~~v~~~Gi~d~F~~sg~~~el~~~~Glt~e~ 571 (581) T PRK12315 497 FITGLDEELLENLKEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFADRVPVEELYKRYHLTPEQ 571 (581) T ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCC-----CEEEEEECCCCCCCCCCHHHHHHHHCCCHHH T ss_conf 24887999999998249879999279766458999999997679-----9089983588676889999999994969999 Q ss_pred HHHHHHHHHC Q ss_conf 9999999850 Q gi|254780673|r 452 IIESVESICY 461 (467) Q Consensus 452 I~~av~~v~~ 461 (467) |+++|+++++ T Consensus 572 I~~~I~~~Lk 581 (581) T PRK12315 572 IVEDILSVLK 581 (581) T ss_pred HHHHHHHHHC T ss_conf 9999999859 No 13 >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Probab=100.00 E-value=0 Score=342.54 Aligned_cols=308 Identities=23% Similarity=0.331 Sum_probs=253.9 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH Q ss_conf 00000000122355443113650699932434458866532364754081110116666278998999988718864456 Q gi|254780673|r 137 TSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE 216 (467) Q Consensus 137 ~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~ 216 (467) ....+.+++..++|.+.+++|++++....|.....| +..+.++| |+|+||+||+||+|++++.|||..|++|++. T Consensus 316 ~~~~~~~~~~g~~l~~la~~~~~lv~~sadl~~stg----l~~f~~~~-p~R~~~~GIrE~~m~a~a~GlA~~G~~P~~~ 390 (642) T PRK12571 316 PNAPSYTSVFGDELVKEAEEDSDIVAITAAMPSGTG----LDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA 390 (642) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC----CCCHHCCC-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 876229999999999999741101020003677777----61010158-8655552455678999963476469962899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCHH Q ss_conf 6666789999999998788674211776788879983-0244576444433216-8876322031386652210001055 Q gi|254780673|r 217 FMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG-PNGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGLL 294 (467) Q Consensus 217 ~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~-p~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~ll 294 (467) .|.+|+.+|+|||++++|- +++|+++.. -.|..+.+||||..-. .++++.||||+|+.|+|+.|.+.++ T Consensus 391 -tf~~F~~ra~~qi~~~~al--------~~lpv~~v~~~~GlvGeDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~a~ 461 (642) T PRK12571 391 -IYSTFLQRGYDQVLHDVAL--------QKLPVRFVIDRAGLVGADGATHAGMFDMAFLTCLPNLRVMAPADEAELRHML 461 (642) T ss_pred -EECCHHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHH T ss_conf -9674455437887632551--------5986699996673247998764243778875479981899129999999999 Q ss_pred HHHHHC-CCCEEEECCCCCCCCCCCCCC--C--CCEECCCCCEEEEECCC-CCEEEEHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 565413-783476402123333345334--6--63121443114443168-74586025788888888753100467527 Q gi|254780673|r 295 KAAIRD-PNPVIFLENEILYGSSFEVPM--V--DDLVIPIGRARIHRQGS-DVTIISFGIGMTYATKAAIELEKNGIDAE 368 (467) Q Consensus 295 ~~ai~~-~~Pvi~le~~~ly~~~~~~p~--~--~~~~~p~Gk~~i~~~G~-ditii~~G~~~~~a~~aa~~L~~~gi~~~ 368 (467) +.|+.. ++|+++ +|.|. .+|. . ....+.+||++++++|+ |++||++|+++..|++|++.|+++||+++ T Consensus 462 ~~al~~~~gP~~i-----~l~R~-~~~~~~~~~~~~~~~~g~~~~~~~g~~dv~lia~Gs~v~~Al~Aa~~L~~~Gi~~~ 535 (642) T PRK12571 462 RTAVAHDDGPIAV-----RYPRG-EGVGVEIPAVGRVLGIGKGRVPREGRPDVAILSVGAHLHECLEAAELLEAEGISVT 535 (642) T ss_pred HHHHHCCCCCEEE-----EECCC-CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEE T ss_conf 9998668998899-----95278-78887766421113564389942799998999860999999999999986699869 Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHCC Q ss_conf 9733006857999999999871989999578876767899999999967764289829971777888889--66765608 Q gi|254780673|r 369 LIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYA--ANLEKLAL 446 (467) Q Consensus 369 vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~--~~le~~~~ 446 (467) |||++|++|+|.+.+.+..++++.+|++|++. .+|+|+.+..++.+.++.....++.+++.+|....++ ..|-++|- T Consensus 536 Vv~~~~~kp~D~~~~~~~~~~~~~vv~~E~~~-~gG~g~~v~~~~~~~g~~~~~~~~~~~Gi~d~Fg~sa~~~~l~~~~G 614 (642) T PRK12571 536 VADARFVKPLDEALIAQLARRHRVLVTVEDGA-MGGFGAHVLHHLADAGLLDGGLKLRTLGLPDRFIDHASPEEMYAEAG 614 (642) T ss_pred EECCCCCCCCCHHHHHHHHHHCCEEEEEECCC-CCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHC T ss_conf 98167378779999999970098899990785-12389999999997498778973899835887678499999999979 Q ss_pred CCHHHHHHHHHHHHCCCCC Q ss_conf 9989999999998502002 Q gi|254780673|r 447 PNVDEIIESVESICYKRKA 465 (467) Q Consensus 447 p~~~~I~~av~~v~~~~~~ 465 (467) .+++.|++++++++.|-+. T Consensus 615 lt~e~Iv~~i~~~L~r~~~ 633 (642) T PRK12571 615 LTAPDIAAQVTGALARLDG 633 (642) T ss_pred CCHHHHHHHHHHHHHHCCC T ss_conf 3999999999999862669 No 14 >PRK05899 transketolase; Reviewed Probab=100.00 E-value=3.3e-37 Score=280.57 Aligned_cols=290 Identities=20% Similarity=0.232 Sum_probs=219.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--CCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCC-CCCHHH Q ss_conf 0000012235544311365069993243445886--6532364754081110116666278998999988718-864456 Q gi|254780673|r 140 ITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGA--YKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAG-LKPIVE 216 (467) Q Consensus 140 ~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~--f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G-~~Piv~ 216 (467) ...|.+..++|....+.+|++|.+--|+..-.+. |+...-..+.| |+|+||+||+||+|+++|+|||+.| ++|++. T Consensus 352 ~Atr~afg~~L~~l~~~~p~ivg~sADl~~St~~~~~~~~~~~~e~~-~~r~~~~GIaE~~mv~~aaGla~~G~~~P~~~ 430 (661) T PRK05899 352 VATRKASGKALNALAAALPELVGGSADLAGSNNTEIKGSKDFTPDDY-SGRYIHYGVREFAMAAIMNGLALHGGFIPFGG 430 (661) T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 04999999999999854876178704547886644255777676578-98732446208999999999985499884012 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCC-CCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCH Q ss_conf 6666789999999998788674211776788879983-0244-576444433216-887632203138665221000105 Q gi|254780673|r 217 FMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG-PNGA-AARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGL 293 (467) Q Consensus 217 ~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~-p~G~-~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~l 293 (467) .|.-|+.|++|||+..+- +++|+++-+ ..|. .+.+|++|..-. .++++.||||+|+.|+|..+++.+ T Consensus 431 -tf~~F~~ra~dqir~~al---------~~~~v~~v~t~~Gi~vG~DG~THq~i~dla~lr~iPn~~v~~P~d~~E~~~~ 500 (661) T PRK05899 431 -TFLVFSDYARNAIRLAAL---------MKLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAA 500 (661) T ss_pred -EHHHHHHHHHHHHHHHHH---------HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHH T ss_conf -079899998999998876---------0487499997875234899866124678999855899679815999999999 Q ss_pred HHHHHH-CCCCEEEECCCCCCCCCCCCCC-----CCCEECCCCCEEEEECC-CCCEEEEHHHHHHHHHHHHHHHHCCCCC Q ss_conf 556541-3783476402123333345334-----66312144311444316-8745860257888888887531004675 Q gi|254780673|r 294 LKAAIR-DPNPVIFLENEILYGSSFEVPM-----VDDLVIPIGRARIHRQG-SDVTIISFGIGMTYATKAAIELEKNGID 366 (467) Q Consensus 294 l~~ai~-~~~Pvi~le~~~ly~~~~~~p~-----~~~~~~p~Gk~~i~~~G-~ditii~~G~~~~~a~~aa~~L~~~gi~ 366 (467) ++.++. .++|++ ++|.+. .+|. ..+..+..|+..++++| .|++|+++|.|+.+|++|++.|+++||+ T Consensus 501 ~~~a~~~~~gp~~-----ir~~r~-~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~Aa~~L~~~gi~ 574 (661) T PRK05899 501 WKLALERKDGPSA-----LVLSRQ-NLPVLETTEEQDEGVAKGGYVLKDSGGPDVILIATGSEVHLALEAAKELEAEGIK 574 (661) T ss_pred HHHHHHCCCCCEE-----EEECCC-CCCCCCCCCCCHHHHCCCCEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHCCCC T ss_conf 9999966999789-----996688-7787787765144421661899987999889998329999999999999864998 Q ss_pred EEEEECCCCCCCCHH--HHHHHH--HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC--CHH Q ss_conf 279733006857999--999999--87198999957887676789999999996776428982997177788888--966 Q gi|254780673|r 367 AELIDLRTIRPMDWQ--TIFESV--KKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPY--AAN 440 (467) Q Consensus 367 ~~vid~r~l~Pld~~--~i~~sv--~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~--~~~ 440 (467) ++|||++|++|||.+ ...+.+ .+++.+++||++...++. .++..+..+++. |....+ ... T Consensus 575 ~~Vv~~~s~~pld~~~~~~~~~vl~~~~~~ivtvE~~~~~g~~-------------~~~~~~~~~lGi-d~Fg~sg~~~~ 640 (661) T PRK05899 575 VRVVSMPSTELFDEQDAAYKESVLPAAVTKRVAVEAGVADGWY-------------KYVGLDGAVVGM-DTFGASAPADE 640 (661) T ss_pred EEEEECCCCCHHHCCCHHHHHHHCCCCCCCEEEECCCHHHHHH-------------HHCCCCCEEEEC-CCCCCCCCHHH T ss_conf 6999768872454674989986427678838998488476589-------------872999789864-88889899999 Q ss_pred HHHHCCCCHHHHHHHHHHHH Q ss_conf 76560899899999999985 Q gi|254780673|r 441 LEKLALPNVDEIIESVESIC 460 (467) Q Consensus 441 le~~~~p~~~~I~~av~~v~ 460 (467) |-++|-.+++.|++++++++ T Consensus 641 L~~~~gld~~~I~~~~~~~L 660 (661) T PRK05899 641 LFKEFGFTVENIVAAAKELL 660 (661) T ss_pred HHHHHCCCHHHHHHHHHHHH T ss_conf 99995989999999999974 No 15 >pfam02779 Transket_pyr Transketolase, pyrimidine binding domain. This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases. Probab=100.00 E-value=2.2e-39 Score=295.87 Aligned_cols=168 Identities=40% Similarity=0.543 Sum_probs=152.4 Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 00000012235544311365069993243445886653236475408111011666627899899998871886445666 Q gi|254780673|r 139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFM 218 (467) Q Consensus 139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~ 218 (467) .+++|+|++++|.++|++|++++++|||++ +|+|..+.++..+||++||||+||+||+|+|+|+|+|++|+||+++++ T Consensus 2 ~~~~r~a~~~al~~~~~~d~~vv~~~~D~~--~g~~~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~G~A~~G~~~iv~~~ 79 (174) T pfam02779 2 KIATRKASGEALAELAERDPRVVGGGADVG--GGTFTVTKGLLHPQGEGRVIDTGIAEQAMVGIANGMALHGLLPPVEAT 79 (174) T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCC--CCCCCHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCHH T ss_conf 764999999999999977989999948778--875513324658778985676581779999999999970996411121 Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCE-EEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHH Q ss_conf 667899-9999999878867421177678887-99830244576444433216887632203138665221000105556 Q gi|254780673|r 219 TFNFAM-QAIDQIINSAAKTRYMSGGQITTSI-VFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKA 296 (467) Q Consensus 219 ~~~f~~-~a~dqi~n~~ak~~~~~gg~~~~p~-v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ 296 (467) |.+|+. ++++||+|++++ +++++|+ ++|.+.|.++..+.+||++.++||+++|||+|++|+|+.|+++||++ T Consensus 80 f~~F~~~r~~~~i~~~~~~------~~~~v~~v~~~~g~~~g~~G~tHhs~~~~a~~~~iPgl~V~~Ps~~~da~~ll~~ 153 (174) T pfam02779 80 FGDFANIRADAAIRHYAAL------GKLPVPFVVTRDPIGVGEDGPTHQSQEDEAYLRAIPGLKVVRPSDPAEAKGLLRA 153 (174) T ss_pred HHHHHHHHHHHHHHHHHHH------CCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHH T ss_conf 7888888659999999985------8999987866646025677154656428999975899889961999999999999 Q ss_pred HHH--CCCCEEEECCCCCCC Q ss_conf 541--378347640212333 Q gi|254780673|r 297 AIR--DPNPVIFLENEILYG 314 (467) Q Consensus 297 ai~--~~~Pvi~le~~~ly~ 314 (467) |++ +++||+++|||.+|+ T Consensus 154 ai~~~~~~Pv~i~~~r~~~~ 173 (174) T pfam02779 154 AIRRDDDDPVVFRLPRQLLR 173 (174) T ss_pred HHHCCCCCCEEEEECHHHCC T ss_conf 99648998389983077678 No 16 >KOG0523 consensus Probab=100.00 E-value=5e-36 Score=272.32 Aligned_cols=302 Identities=20% Similarity=0.278 Sum_probs=226.4 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCC-CCHH Q ss_conf 000000001223554431136506999324344588665323647540811101166662789989999887188-6445 Q gi|254780673|r 137 TSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGL-KPIV 215 (467) Q Consensus 137 ~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~-~Piv 215 (467) .+.++.|.+..+||+.+-+.||+++..--|... +.| |.-+.++| |+|+|+.+|+||+|+|++.|+|..|. +|++ T Consensus 317 Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~--st~--td~~~~~~-p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~ 391 (632) T KOG0523 317 DKAVATRKAFGEALAALAEADPRVIGGSADLKN--STL--TDFFPKRF-PERFIECGIAEQNMVGIANGIACRGRTIPFC 391 (632) T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCH--HHHCCCCC-CCCEEEEEEEHHHHHHHHHCHHCCCCCCCHH T ss_conf 600547999999999976428564887546678--716--65431227-6642787320211677540231178866513 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE--ECCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCC Q ss_conf 66666789999999998788674211776788879983--0244576444433216-88763220313866522100010 Q gi|254780673|r 216 EFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG--PNGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKG 292 (467) Q Consensus 216 ~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~--p~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~ 292 (467) . -|+.|..||+||++..+- + ..+++..+ -.+..+.+||+|..-. .++|+.||||.|++|+|..+... T Consensus 392 ~-tf~~F~trA~dqvr~~a~-----s----~~~v~~v~th~~i~~GeDGPth~~iedla~frsiPn~~v~~PaD~~et~~ 461 (632) T KOG0523 392 G-TFAAFFTRAFDQVRMGAL-----S----QANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGNETEN 461 (632) T ss_pred H-HHHHHHHHHHHHEEEHHH-----C----CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHH T ss_conf 8-799999875302443223-----1----68857999704511368886556388999987078854771076378999 Q ss_pred HHHHHHHCCC-CEEEECCCCCCCCCCCCCCCC-CEECCCCCEE-EEECCC-CCEEEEHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 5556541378-347640212333334533466-3121443114-443168-74586025788888888753100467527 Q gi|254780673|r 293 LLKAAIRDPN-PVIFLENEILYGSSFEVPMVD-DLVIPIGRAR-IHRQGS-DVTIISFGIGMTYATKAAIELEKNGIDAE 368 (467) Q Consensus 293 ll~~ai~~~~-Pvi~le~~~ly~~~~~~p~~~-~~~~p~Gk~~-i~~~G~-ditii~~G~~~~~a~~aa~~L~~~gi~~~ 368 (467) ++..|...++ |.++ .+++++. |..+ .-.+.+||++ ++++++ ||++|++|.+|++|++||+.|+++||+++ T Consensus 462 av~~Aa~~~~~p~i~----~~~r~~~--~~~~~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~e~gi~vr 535 (632) T KOG0523 462 AVATAANTKGTPSIR----TLSRQNL--PIYNNTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLSEDGIKVR 535 (632) T ss_pred HHHHHHHCCCCEEEE----EECCCCC--CCCCCCCHHHHCCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEE T ss_conf 999987048960699----8477765--6568965545326507986388877999265899999999999986496389 Q ss_pred EEECCCCCCCCHHHHHHHHHHCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC--CCHHHHHHC Q ss_conf 97330068579999999998719-899995788767678999999999677642898299717778888--896676560 Q gi|254780673|r 369 LIDLRTIRPMDWQTIFESVKKTG-RLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMP--YAANLEKLA 445 (467) Q Consensus 369 vid~r~l~Pld~~~i~~sv~kt~-~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P--~~~~le~~~ 445 (467) |+|++|+||||..+|.++.+.++ |+.|+|++...||++....+.... ++.-.+..-..|...- -.+.|-+.+ T Consensus 536 Vvd~~~~kplD~~li~~~~q~~~~ri~v~ed~~~~gsi~~~~~a~~g~-----~~~~~~~~~~~d~~~~sG~p~ell~~f 610 (632) T KOG0523 536 VVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGK-----YPGILVPSLGVDTFGRSGPPPELLKMF 610 (632) T ss_pred EECCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEEHHCC-----CCCCCCEEECCCCCCCCCCCHHHHHHH T ss_conf 954532000235877655135541799804877776665302102103-----788631353124677679978999872 Q ss_pred CCCHHHHHHHHHHHHCCCC Q ss_conf 8998999999999850200 Q gi|254780673|r 446 LPNVDEIIESVESICYKRK 464 (467) Q Consensus 446 ~p~~~~I~~av~~v~~~~~ 464 (467) -.+.+.|.+++++...|-+ T Consensus 611 Git~~~Ia~~a~~~i~~~~ 629 (632) T KOG0523 611 GITARHIAAAALSLIGKYR 629 (632) T ss_pred CCCHHHHHHHHHHHHHHHC T ss_conf 9888999999999874440 No 17 >PRK12754 transketolase; Reviewed Probab=100.00 E-value=7.9e-33 Score=249.85 Aligned_cols=289 Identities=15% Similarity=0.172 Sum_probs=192.4 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHC-CCCCHHHHH Q ss_conf 000012235544311365069993243445886-653236475408111011666627899899998871-886445666 Q gi|254780673|r 141 TVREALRDAIAEEMRRDKDVFIMGEEVAEYQGA-YKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFA-GLKPIVEFM 218 (467) Q Consensus 141 TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~-f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~-G~~Piv~~~ 218 (467) ..|.+-..++...-+..|+++.--.|+....-. ..-+..+.++| |+|+||.||+||+|+++|.|||+. |++|++. . T Consensus 356 atr~a~~~~l~~~~~~~p~liggsADL~~st~t~~~g~~~f~~~~-pgR~~~~GIrE~~m~aia~Gla~~ggl~P~~a-t 433 (663) T PRK12754 356 ASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYTS-T 433 (663) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHC-CCCEEEHHHHHHHHHHHHHHHHHCCCCEEEEE-E T ss_conf 324311869999998637772567222554333335774322006-86625402578889999999987289725774-4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE-EEECC-CCCCCCHHHHHH-HHHHHHHHCCCEEEEEECCHHCCCHHH Q ss_conf 667899999999987886742117767888799-83024-457644443321-688763220313866522100010555 Q gi|254780673|r 219 TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF-RGPNG-AAARVAAQHSQC-YAAWYSHVPGLKVVIPYTASDAKGLLK 295 (467) Q Consensus 219 ~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~-r~p~G-~~~~~g~~Hs~~-~~~~~~~iPgl~V~~P~~~~d~~~ll~ 295 (467) |+.|+-|++|||+..+.. ++++++ -+..| ..+.+||+|..- ..++++.||||+|+.|+|..+.+.+++ T Consensus 434 f~~F~dra~d~iRl~~~~---------~~~~~~v~thd~i~vGeDGpTHq~ve~la~lR~iPn~~v~~PaD~~E~~~a~~ 504 (663) T PRK12754 434 FLMFVEYARNAVRMAALM---------KQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWK 504 (663) T ss_pred EHHHHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH T ss_conf 088999888999999875---------27856999725632079986316689999997447977981399999999999 Q ss_pred HHHH-CCCCEEEECCCCCCCCCCCCCC---CCCEECCCC-CEEEEECCC---CCEEEEHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 6541-3783476402123333345334---663121443-114443168---7458602578888888875310046752 Q gi|254780673|r 296 AAIR-DPNPVIFLENEILYGSSFEVPM---VDDLVIPIG-RARIHRQGS---DVTIISFGIGMTYATKAAIELEKNGIDA 367 (467) Q Consensus 296 ~ai~-~~~Pvi~le~~~ly~~~~~~p~---~~~~~~p~G-k~~i~~~G~---ditii~~G~~~~~a~~aa~~L~~~gi~~ 367 (467) .|+. .++|+. ++|.|. .+|. ..+....++ .+.++++++ |++|+++|++|.+|++||+.|+++||++ T Consensus 505 ~al~~~~gP~~-----i~~~R~-~~~~~~~~~~~~~~~~~G~yv~~~~~g~~dv~iia~Gs~v~~Al~Aa~~L~~~gi~~ 578 (663) T PRK12754 505 YGVERQDGPTA-----LILSRQ-NLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKA 578 (663) T ss_pred HHHHCCCCCEE-----EEEECC-CCCCCCCCCCHHCCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCE T ss_conf 99965589769-----998478-878768762001003563299850599999999952589999999999999679978 Q ss_pred EEEECCCCCCCCHHH--HHHHHHHC--CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CCCCHHH Q ss_conf 797330068579999--99999871--98999957887676789999999996776428982997177788--8889667 Q gi|254780673|r 368 ELIDLRTIRPMDWQT--IFESVKKT--GRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVP--MPYAANL 441 (467) Q Consensus 368 ~vid~r~l~Pld~~~--i~~sv~kt--~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p--~P~~~~l 441 (467) +|||++|++|||.+. ..+++-.. ..-+.|| +|++.....++ ..+-..++..+-. -| ...| T Consensus 579 ~VVs~~~~~~~d~q~~~~~~~vl~~~~~~~v~ve-----~g~~~~w~~~~--------g~~~~~iG~~~FG~Sg~-~~~l 644 (663) T PRK12754 579 RVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVE-----AGIADYWYKYV--------GLNGAIVGMTTFGESAP-AELL 644 (663) T ss_pred EEEECCCCHHHHHCHHHHHHHHCCCCCCEEEEEE-----CCCHHHHHHHC--------CCCCEEEECCCCCCCCC-HHHH T ss_conf 9997898548774649999843687765069996-----56265799982--------99980985676668899-9999 Q ss_pred HHHCCCCHHHHHHHHHHHH Q ss_conf 6560899899999999985 Q gi|254780673|r 442 EKLALPNVDEIIESVESIC 460 (467) Q Consensus 442 e~~~~p~~~~I~~av~~v~ 460 (467) -+.|-.+++.|++++|+++ T Consensus 645 ~~~~Glt~e~I~~~vk~lL 663 (663) T PRK12754 645 FEEFGFTVDNVVAKAKALL 663 (663) T ss_pred HHHHCCCHHHHHHHHHHHC T ss_conf 9994989999999999659 No 18 >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included Probab=100.00 E-value=2.6e-32 Score=246.30 Aligned_cols=151 Identities=26% Similarity=0.402 Sum_probs=129.8 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 01223554431136506999324344588665323647540811101166662789989999887188644566666789 Q gi|254780673|r 144 EALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFA 223 (467) Q Consensus 144 ea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~ 223 (467) +|.+++|.++|++|++++++++|++.++| +.++.++| |+|+||+||+||+|+|+|+|||++|+|||++. +..|+ T Consensus 1 ~a~~~~l~~~~~~d~~vv~l~~Dl~~~~~----~~~f~~~~-p~r~in~GIaE~~~vg~a~GlA~~G~~pi~~~-~~~F~ 74 (156) T cd07033 1 KAFGEALLELAKKDPRIVALSADLGGSTG----LDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVST-FSFFL 74 (156) T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCC----HHHHHHHC-CCCEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHH T ss_conf 97999999999779799999687678877----58999878-97844477019999999999997599981135-79887 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC--CCCCCCHHHHHHH--HHHHHHHCCCEEEEEECCHHCCCHHHHHHH Q ss_conf 999999998788674211776788879983024--4576444433216--887632203138665221000105556541 Q gi|254780673|r 224 MQAIDQIINSAAKTRYMSGGQITTSIVFRGPNG--AAARVAAQHSQCY--AAWYSHVPGLKVVIPYTASDAKGLLKAAIR 299 (467) Q Consensus 224 ~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G--~~~~~g~~Hs~~~--~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~ 299 (467) +||+|||+|++|. .++|+++++..+ .++..|++| |+. .++|+++|||+|++|+|+.|++++++++++ T Consensus 75 ~r~~eqi~~~~a~--------~~~~v~~v~~~~g~~~~~~G~tH-~~~ed~~~~~~~Pgl~i~~P~~~~e~~~ll~~a~~ 145 (156) T cd07033 75 QRAYDQIRHDVAL--------QNLPVKFVGTHAGISVGEDGPTH-QGIEDIALLRAIPNMTVLRPADANETAAALEAALE 145 (156) T ss_pred HHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCC-CCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 5109999999775--------27996599768854777897880-55005878723899489961999999999999982 Q ss_pred CCCCEEEECC Q ss_conf 3783476402 Q gi|254780673|r 300 DPNPVIFLEN 309 (467) Q Consensus 300 ~~~Pvi~le~ 309 (467) +++|+++..+ T Consensus 146 ~~~P~~irl~ 155 (156) T cd07033 146 YDGPVYIRLP 155 (156) T ss_pred CCCCEEEEEE T ss_conf 8998899976 No 19 >PRK12753 transketolase; Reviewed Probab=99.98 E-value=1.6e-30 Score=233.69 Aligned_cols=292 Identities=17% Similarity=0.180 Sum_probs=202.7 Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHC-CCCCHHH Q ss_conf 00000012235544311365069993243445886-653236475408111011666627899899998871-8864456 Q gi|254780673|r 139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGA-YKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFA-GLKPIVE 216 (467) Q Consensus 139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~-f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~-G~~Piv~ 216 (467) .+..|.+...++...-...|+++....|+....-. +.-+..+.+.| |.|+|+.||+||+|++++.|+|+. |++|++. T Consensus 353 ~iAtR~a~g~~L~~l~~~~p~liggsADL~~S~~t~~~~~~~f~~~~-~gr~~~~GI~E~~m~~~a~Gla~~ggl~P~~~ 431 (662) T PRK12753 353 KIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPYTA 431 (662) T ss_pred CCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 42166656899999997581230676643665543146774334378-97626612578879999989987289748876 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE-EECC-CCCCCCHHHH-HHHHHHHHHHCCCEEEEEECCHHCCCH Q ss_conf 666678999999999878867421177678887998-3024-4576444433-216887632203138665221000105 Q gi|254780673|r 217 FMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFR-GPNG-AAARVAAQHS-QCYAAWYSHVPGLKVVIPYTASDAKGL 293 (467) Q Consensus 217 ~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r-~p~G-~~~~~g~~Hs-~~~~~~~~~iPgl~V~~P~~~~d~~~l 293 (467) -|+-|+-+++|||+..+. +++|+++. +..| ..+.+||+|. -...++++.||||+|+.|+|..+.+.+ T Consensus 432 -tf~~F~~~~~~~ir~~a~---------~~~~~i~v~Thd~i~vGeDGpTHQ~ie~la~lR~iPn~~v~~PaD~~E~~~a 501 (662) T PRK12753 432 -TFLMFVEYARNAARMAAL---------MKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVA 501 (662) T ss_pred -EHHHHHHHHHHHHHHHHH---------HCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHH T ss_conf -599999986899999987---------2588279995355404688765330789999985558779931888999999 Q ss_pred HHHHHH-CCCCEEEECCCCCCCC-CC-CCCCCCCEECCCCC-EEEEECCC---CCEEEEHHHHHHHHHHHHHHHHCCCCC Q ss_conf 556541-3783476402123333-34-53346631214431-14443168---745860257888888887531004675 Q gi|254780673|r 294 LKAAIR-DPNPVIFLENEILYGS-SF-EVPMVDDLVIPIGR-ARIHRQGS---DVTIISFGIGMTYATKAAIELEKNGID 366 (467) Q Consensus 294 l~~ai~-~~~Pvi~le~~~ly~~-~~-~~p~~~~~~~p~Gk-~~i~~~G~---ditii~~G~~~~~a~~aa~~L~~~gi~ 366 (467) ++.++. .++|+.+ +|.| +. .++..++....+.| +.++++++ |++||++|++|.+|++||++|+++||+ T Consensus 502 ~~~a~~~~~gP~~l-----~l~R~~~~~~~~~~~~~~~~~~G~yil~~~~~~pdv~iiatGs~v~~Al~Aa~~L~~~gi~ 576 (662) T PRK12753 502 WKLAIERHNGPTAL-----ILSRQNLAQVERTPEQVKNIARGGYILKDSGGKPDLILIATGSEVEITLQAAEKLTGEGRN 576 (662) T ss_pred HHHHHHCCCCCEEE-----EEECCCCCCCCCCCHHHHCCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCCC T ss_conf 99999625897499-----9857877876887111321565259995059999899996309999999999999967997 Q ss_pred EEEEECCCCCCCCHH--HHHHHHH--HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC--CHH Q ss_conf 279733006857999--9999998--7198999957887676789999999996776428982997177788888--966 Q gi|254780673|r 367 AELIDLRTIRPMDWQ--TIFESVK--KTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPY--AAN 440 (467) Q Consensus 367 ~~vid~r~l~Pld~~--~i~~sv~--kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~--~~~ 440 (467) ++||+++|++|||.+ ...+++- .+...+.||.+ .+..... ++..+-..++. |..--+ ... T Consensus 577 ~~Vvs~~s~~~~d~q~~~~~~~vl~~~~~~~~~vEag-----~~~~w~~--------~~g~~~~~iGi-d~FG~Sg~~~~ 642 (662) T PRK12753 577 VRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAG-----IADYWYK--------YVGLKGAIIGM-TGFGESAPADK 642 (662) T ss_pred EEEEECCCCHHHHHCCHHHHHHHCCCCCCEEEEEECC-----CCCHHHH--------HCCCCCEEEEC-CCCCCCCCHHH T ss_conf 8999789854877360999973067667547999647-----4004999--------80899859866-88789999999 Q ss_pred HHHHCCCCHHHHHHHHHHHH Q ss_conf 76560899899999999985 Q gi|254780673|r 441 LEKLALPNVDEIIESVESIC 460 (467) Q Consensus 441 le~~~~p~~~~I~~av~~v~ 460 (467) |-+.|-.+++.|++++|+++ T Consensus 643 L~~~~Glt~e~I~~~~k~~L 662 (662) T PRK12753 643 LFPFFGFTVENIVAKAKKLL 662 (662) T ss_pred HHHHHCCCHHHHHHHHHHHC T ss_conf 99984989999999999659 No 20 >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase; InterPro: IPR005477 DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. DXP synthase is found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis . In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding . This family includes transketolase enzymes 2.2.1.1 from EC. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0008661 1-deoxy-D-xylulose-5-phosphate synthase activity, 0016114 terpenoid biosynthetic process. Probab=99.97 E-value=7.9e-30 Score=228.84 Aligned_cols=316 Identities=20% Similarity=0.342 Sum_probs=254.9 Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHH Q ss_conf 11233331-00000000000000122355443113650699932434458866532364754081110116666278998 Q gi|254780673|r 123 SKNDIQDS-SFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAG 201 (467) Q Consensus 123 a~~~~~~~-~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G 201 (467) .+...... ..+......++..+.....+.+..++|++++-+-.-...-.| ..++.++| |+|+||++|+||+.+. T Consensus 300 ~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g----~~~~~~~~-p~~~~d~~~~~~~~~~ 374 (627) T TIGR00204 300 GPFDLSTGKLLPKSKSAPPSYSKLFGDTLCELAKKDGKIVGITPAMPEGSG----LDKLSDKF-PDRYFDVGIAEQHAVT 374 (627) T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----HHHHHHHH-HHHHHHHHHHHHHHHH T ss_conf 765644331023554556641355556788775305652552012222331----46888750-0345423332345566 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCCCCCCCHHHHHHH-HHHHHHHCCC Q ss_conf 9999887188644566666789999999998788674211776788879983-0244576444433216-8876322031 Q gi|254780673|r 202 IGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG-PNGAAARVAAQHSQCY-AAWYSHVPGL 279 (467) Q Consensus 202 ~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~-p~G~~~~~g~~Hs~~~-~~~~~~iPgl 279 (467) ++.|+|+.|+||++.+. ..|+.+++||++|+++. .++|+.+.. -.|..+..|.+|...+ .++++++||| T Consensus 375 ~~~~~~~~g~~p~~~~y-~~~l~~~yd~~~~d~~~--------~~~p~~~~~d~~g~~g~dg~~~~g~~d~~~~~~~p~~ 445 (627) T TIGR00204 375 LAAGLAIEGYKPFVAIY-STFLQRAYDQVVHDVCI--------QNLPVFFAIDRAGIVGADGETHQGLFDISYLRCIPNL 445 (627) T ss_pred HHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHH--------HHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCC T ss_conf 66555422430378888-88876666778887776--------3055024412334214776410213556776531300 Q ss_pred EEEEEECCHHCCCHHHHHHHCC-CCEEEECCCCCCCCCC--CCCCCCC--EECCCCCEEEEECCCCCEEEEHHHHHHHHH Q ss_conf 3866522100010555654137-8347640212333334--5334663--121443114443168745860257888888 Q gi|254780673|r 280 KVVIPYTASDAKGLLKAAIRDP-NPVIFLENEILYGSSF--EVPMVDD--LVIPIGRARIHRQGSDVTIISFGIGMTYAT 354 (467) Q Consensus 280 ~V~~P~~~~d~~~ll~~ai~~~-~Pvi~le~~~ly~~~~--~~p~~~~--~~~p~Gk~~i~~~G~ditii~~G~~~~~a~ 354 (467) .+++|+|..+.+.++..+..++ +|+. .+|.+.. .++.... ..+|+|+++++|.|.++.++.||.++..++ T Consensus 446 ~~~~p~d~~~~~~~~~~~~~~~~~p~~-----~~~p~g~~~g~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~g~~~~~~~ 520 (627) T TIGR00204 446 VLMAPKDENELRQMLYTGYEYDGGPIA-----VRYPRGNGLGVELTPEPWEGLPIGKSELLRKGGDLLLLGFGTLVPPAL 520 (627) T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCEE-----EECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCHHHHHH T ss_conf 132366345666666531114775204-----531465533343321354322124023103777468873352135788 Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC Q ss_conf 88753100467527973300685799999999987198999957887676789999999996776428982997177788 Q gi|254780673|r 355 KAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVP 434 (467) Q Consensus 355 ~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p 434 (467) ++++.|.++|+++.++|+|+++|+|.+.+...++....+++++|+...||+|+.+...+.++. ....|+.+++.+|.. T Consensus 521 ~~~~~l~~~~~~~~~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~gg~g~~~~~~~~~~~--~~~~p~~~~g~pd~~ 598 (627) T TIGR00204 521 EVAEALNEEGLEATLVDLRFVKPLDEELILPLAAPHGKLVTLEENALLGGFGSAVLEFLSDQG--EKLTPLKRLGLPDEF 598 (627) T ss_pred HHHHHHHHCCCEEEEECHHHHCCCCHHHHHHHHHCCCCEEEEECCHHCCCHHHHHHHHHHHCC--CCCCHHHHHCCCHHH T ss_conf 999987533760565200220313468899886303303553011010320468899886247--400024441441244 Q ss_pred CCCCH--HHHHHCCCCHHHHHHHHHHH Q ss_conf 88896--67656089989999999998 Q gi|254780673|r 435 MPYAA--NLEKLALPNVDEIIESVESI 459 (467) Q Consensus 435 ~P~~~--~le~~~~p~~~~I~~av~~v 459 (467) ++++. .+....-.+...+.+.++.. T Consensus 599 ~~~~~~~~~~~~~gl~~~~~~~~~~~~ 625 (627) T TIGR00204 599 IPHGTPEELLADLGLDTAGLADKILAL 625 (627) T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 315646778876257767889999874 No 21 >PRK05704 dihydrolipoamide succinyltransferase; Validated Probab=99.97 E-value=1.3e-29 Score=227.32 Aligned_cols=85 Identities=32% Similarity=0.610 Sum_probs=79.8 Q ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 97356678888881157898774178976258985999953753334317778689899823788513269758999437 Q gi|254780673|r 1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 1 M~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) |++||+||+|||+|+||+|++|+||+||.|++||+|||||||||++|||||++|+|.+|++++| +.|+||++|++|.++ T Consensus 1 M~~ei~mP~lGe~m~Eg~I~~Wlvk~GD~V~~gd~L~eVETDKa~~Ei~s~~~G~l~ki~~~eG-d~v~VG~~ia~I~~~ 79 (406) T PRK05704 1 MSVEIKVPTLPESVTEATIATWHKKPGDAVARDEVLVEIETDKVVLEVPAPAAGVLSEILAEEG-DTVTVGQVLGRIDEG 79 (406) T ss_pred CCCEEECCCCCCCCEEEEEEEEECCCCCEECCCCEEEEEECCCCCEEECCCCCEEEEEEEECCC-CEECCCCEEEEEECC T ss_conf 9823667999998307999899818999978999089998386207974888989999830898-996689989998268 Q ss_pred CCCCCC Q ss_conf 777211 Q gi|254780673|r 81 GETALD 86 (467) Q Consensus 81 ge~a~~ 86 (467) ++.... T Consensus 80 ~~~~~~ 85 (406) T PRK05704 80 AAAGAE 85 (406) T ss_pred CCCCCC T ss_conf 876667 No 22 >PTZ00144 dihydrolipoamide succinyltransferase; Provisional Probab=99.97 E-value=5.7e-29 Score=222.81 Aligned_cols=86 Identities=34% Similarity=0.585 Sum_probs=79.1 Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC Q ss_conf 35667888888115789877417897625898599995375333431777868989982378851326975899943777 Q gi|254780673|r 3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE 82 (467) Q Consensus 3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege 82 (467) .+||||+|||+|+||+|++|+||+||.|++||+|||||||||+||||||++|+|.+|++++| |+|+||++|+.|+++++ T Consensus 58 ~~ikMP~LGetm~EG~Iv~WlvkeGD~V~~gd~L~EVETDKA~~EVeSp~~G~l~kIlv~eG-d~V~VG~~la~I~~~~e 136 (430) T PTZ00144 58 KTIKVPRLGDSISEGTLSEWKKKVGDYVKVDETIAIVETDKVSVDINSKFSGVLSKIFAEVG-DTVLVGKPLCEIDTSGE 136 (430) T ss_pred EEEECCCCCCCCEEEEEEEEECCCCCEECCCCCEEEEECCCCCEEECCCCCEEEEEEEECCC-CEEECCCEEEEEECCCC T ss_conf 49879889998206999799818999868999089998588417965778979999863799-98946986999966878 Q ss_pred CCCCCCC Q ss_conf 7211222 Q gi|254780673|r 83 TALDIDK 89 (467) Q Consensus 83 ~a~~~~~ 89 (467) ..+...+ T Consensus 137 ~~~~~~~ 143 (430) T PTZ00144 137 PPAKIPE 143 (430) T ss_pred CCCCCCC T ss_conf 7666655 No 23 >pfam02780 Transketolase_C Transketolase, C-terminal domain. The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site. Probab=99.96 E-value=3.4e-29 Score=224.34 Aligned_cols=123 Identities=49% Similarity=0.773 Sum_probs=118.4 Q ss_pred CCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHH Q ss_conf 31144431687458602578888888875310046752797330068579999999998719899995788767678999 Q gi|254780673|r 330 GRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTI 409 (467) Q Consensus 330 Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i 409 (467) ||++++|+|+|+|||+||+|+++|++|++.|+++||+++|||+||+||||+++|.++++||++++|+||++..||||++| T Consensus 1 Gk~~~~~~G~di~ii~~G~~~~~al~aa~~L~~~gi~~~vid~~~ikPlD~~~i~~~~~~~~~vvtvEe~~~~gG~Gs~i 80 (124) T pfam02780 1 GKAEILREGDDVTIVAYGSMVHEALEAAEELAAEGISAEVIDLRTVKPLDEDTILESVKKTGRLVVVEEAVPRGGFGAEV 80 (124) T ss_pred CCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHH T ss_conf 94599982897999984789999999999987759856997423643667899999873348689984688678689999 Q ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCC-CHHHH Q ss_conf 99999967764289829971777888889667656089-98999 Q gi|254780673|r 410 ANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALP-NVDEI 452 (467) Q Consensus 410 ~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p-~~~~I 452 (467) ++.+.|++|.+|+.|+.|++.+|.|+|++..+|+.+|+ +++.| T Consensus 81 ~~~l~e~~~~~l~~~v~~ig~pd~~ip~s~~~~~~~~Gl~~~~I 124 (124) T pfam02780 81 AAALAEEGFDYLDAPVLRVGGPDTPIPHSPALELAYLGLTAEKI 124 (124) T ss_pred HHHHHHHCHHHCCCCEEEECCCCCCCCCCHHHHHHHCCCCHHHC T ss_conf 99999856654499969974798989999999998849991239 No 24 >TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006257 This group of sequences represent one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria, but not the Gram-positive bacteria.; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006090 pyruvate metabolic process, 0045254 pyruvate dehydrogenase complex. Probab=99.96 E-value=1.3e-29 Score=227.42 Aligned_cols=157 Identities=39% Similarity=0.559 Sum_probs=112.0 Q ss_pred EEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCC Q ss_conf 56678888881157898774178976258985999953753334317778689899823788513269758999437777 Q gi|254780673|r 4 LVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGET 83 (467) Q Consensus 4 ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege~ 83 (467) .|+||+|++||++|+|++|+||+||.|+.||+|+|||||||+||+++.++|+|++|||++|+.+|+||++||++.+++++ T Consensus 1 ~i~MPaLSPTM~~Gnla~W~KKeGDkv~~GDViaEIETDKAtm~~e~~~eGyLAKILv~eGTkdvpvn~pIAV~v~~~eD 80 (584) T TIGR01349 1 KITMPALSPTMTEGNLAKWLKKEGDKVKPGDVIAEIETDKATMEFEAQEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED 80 (584) T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECCCCH T ss_conf 98888887154656210244113777168876988745842674576268578888652478576358616896068011 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH------------H--HHHHH Q ss_conf 211222233212344222332233322233221000000112333310000000000000------------0--12235 Q gi|254780673|r 84 ALDIDKMLLEKPDVAISPSSKNTTLVFSNEDNDKVDHQKSKNDIQDSSFAHAPTSSITVR------------E--ALRDA 149 (467) Q Consensus 84 a~~~~~~~a~~~~aa~aaa~~~~s~~~~~a~~~a~~~~~a~~~~~~~~~~~~~~~~~TvR------------e--a~~~a 149 (467) ..++.+--.-+..+...|.+.+++.+...++++.+....+....++-..-.-|..+++|. + .-.++ T Consensus 81 ~~~a~~~~~~~~~a~~TP~~~pAp~P~~~a~PPtPsa~~~~~~YP~H~~V~lPALSP~M~~G~~~~W~KK~G~~~~~GD~ 160 (584) T TIGR01349 81 VADAFKDYKLEDSASSTPVAEPAPKPKEKAPPPTPSAKKSTKSYPAHKVVLLPALSPSMETGTVARWEKKVGDKLKEGDL 160 (584) T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCE T ss_conf 88998088700104788877787787223765586445778888864323245657655667400001345762233752 Q ss_pred HHHHHCCCCCEE Q ss_conf 544311365069 Q gi|254780673|r 150 IAEEMRRDKDVF 161 (467) Q Consensus 150 ~~e~m~~d~~~~ 161 (467) |+| .+.|+-.+ T Consensus 161 ~AE-~ETDKAT~ 171 (584) T TIGR01349 161 LAE-VETDKATI 171 (584) T ss_pred EEE-EECCCEEE T ss_conf 555-42252022 No 25 >smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. Probab=99.96 E-value=4.6e-29 Score=223.43 Aligned_cols=157 Identities=40% Similarity=0.589 Sum_probs=130.7 Q ss_pred HHHHHHHHHHHHHHCCC-CCEEEEECCCCCC-----CCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCH Q ss_conf 00001223554431136-5069993243445-----88665323647540811101166662789989999887188644 Q gi|254780673|r 141 TVREALRDAIAEEMRRD-KDVFIMGEEVAEY-----QGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPI 214 (467) Q Consensus 141 TvRea~~~a~~e~m~~d-~~~~~~gedv~~~-----~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Pi 214 (467) +.|++++++|.++|++| ++++++|+|++.. ++.|..++++ +|+|+||+||+||+|+|+|+|||+.|++|| T Consensus 1 ~~r~a~~~~l~~l~~~~~~~iv~~~~Dl~~~~~~~~~~~f~~~~~~----~~~r~i~~gIaE~~~vg~a~GlA~~G~~pi 76 (168) T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTKGL----GPGRVIDTGIAEQAMVGFAAGLALAGLRPV 76 (168) T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCCCCC----CCCCEEECCCCHHHHHHHHHHHHHCCCCCC T ss_conf 9189999999999856997199983674887577536610444456----998756448378999998759987599642 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC-CCCCCCCHH-HHHHHHHHHHHHCCCEEEEEECCHHCCC Q ss_conf 56666678999999999878867421177678887998302-445764444-3321688763220313866522100010 Q gi|254780673|r 215 VEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPN-GAAARVAAQ-HSQCYAAWYSHVPGLKVVIPYTASDAKG 292 (467) Q Consensus 215 v~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~-G~~~~~g~~-Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ 292 (467) ++++. .|..+++|||+++++. .++|++++... |..++.|++ ||++.+++|++|||++|++|+|+.|+++ T Consensus 77 ~~~~~-~f~~~a~~qi~~~~~~--------~~~~~v~~~~~~~~~g~~G~tH~s~~~~~~~~~ip~~~v~~P~~~~e~~~ 147 (168) T smart00861 77 VAIFF-TFFDRAKDQIRSDGAM--------GRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKG 147 (168) T ss_pred CCHHH-HHHHHHHHHHHHHHHC--------CCCCEEEEEECEEEECCCCCHHCCCCHHHHHHHCCCCEEEEECCHHHHHH T ss_conf 10235-7887589999865340--------66773788601005668864110444388886179978997099999999 Q ss_pred HHHHHHHCC-CC-EEEECCC Q ss_conf 555654137-83-4764021 Q gi|254780673|r 293 LLKAAIRDP-NP-VIFLENE 310 (467) Q Consensus 293 ll~~ai~~~-~P-vi~le~~ 310 (467) +|+++++++ +| +|+++++ T Consensus 148 ~l~~a~~~~~~p~~i~l~~~ 167 (168) T smart00861 148 LLRAAIRRDDGPPVIRLERK 167 (168) T ss_pred HHHHHHHCCCCCEEEEECCC T ss_conf 99999848899889997389 No 26 >PRK11855 dihydrolipoamide acetyltransferase; Reviewed Probab=99.96 E-value=1.6e-28 Score=219.63 Aligned_cols=86 Identities=31% Similarity=0.494 Sum_probs=80.8 Q ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 97356678888881157898774178976258985999953753334317778689899823788513269758999437 Q gi|254780673|r 1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 1 M~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) |+++|+||+|||+|+||+|++|||++||+|++||+|||||||||+||||||++|+|++|++++| ++|+||++|++|..+ T Consensus 1 Ma~e~~mP~lGe~~~egeI~~W~v~~GD~V~~~d~l~evETDKa~~Evps~~~G~v~~i~v~~G-d~v~vG~~i~~i~~~ 79 (549) T PRK11855 1 MAKEFKVPDIGEGVVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKKIKVKVG-DTVSVGAPLAVIEAA 79 (549) T ss_pred CCCEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCCEEECCCCCEEEEEEEECCC-CEECCCCEEEEEECC T ss_conf 9846867888898512899999957999878999289998177136843888979999961899-884699859999568 Q ss_pred CCCCCCC Q ss_conf 7772112 Q gi|254780673|r 81 GETALDI 87 (467) Q Consensus 81 ge~a~~~ 87 (467) ++..... T Consensus 80 ~~~~~~~ 86 (549) T PRK11855 80 GAAAAAA 86 (549) T ss_pred CCCCCCC T ss_conf 7766666 No 27 >COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Probab=99.95 E-value=8.2e-28 Score=214.67 Aligned_cols=83 Identities=52% Similarity=0.783 Sum_probs=79.8 Q ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 97356678888881157898774178976258985999953753334317778689899823788513269758999437 Q gi|254780673|r 1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 1 M~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) |+++|+||+|||||+||+|++|+||+||+|++||+|+||||||++||||||++|+|.+|++++|+ +|+||++|++|.++ T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~-~V~Vg~~I~~i~~~ 79 (404) T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGD-TVPVGAVIARIEEE 79 (404) T ss_pred CCCEEECCCCCCCCEEEEEEEEEECCCCEECCCCCEEEEEECCEEEEECCCCCCEEEEEECCCCC-EECCCCEEEEEECC T ss_conf 97367468988851367885897269986369980699980653355147778599676205898-87589858999337 Q ss_pred CCCC Q ss_conf 7772 Q gi|254780673|r 81 GETA 84 (467) Q Consensus 81 ge~a 84 (467) +++. T Consensus 80 ~~~~ 83 (404) T COG0508 80 GADA 83 (404) T ss_pred CCCC T ss_conf 7765 No 28 >TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR014276 This entry represents the mainly actinobacterial clade of the E2 component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (IPR001078 from INTERPRO), one or two biotin domains (IPR000089 from INTERPRO) and an E3-component binding domain (IPR004167 from INTERPRO).. Probab=99.95 E-value=4.3e-28 Score=216.64 Aligned_cols=78 Identities=33% Similarity=0.489 Sum_probs=75.3 Q ss_pred CEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 7356678888881157898774178976258985999953753334317778689899823788513269758999437 Q gi|254780673|r 2 PILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 2 ~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) +++|.||.||||+|||||++|||.+||+|+.|++|+||-|||+..|||||.+|+|.+|+++| ||+|.||++||+|.+. T Consensus 135 aT~v~MPeLGESVTEGTvt~WLKaVGD~vEvDEPllEVsTDKVDTEiPSPvaGtlleI~a~E-DdtVeVG~vlA~IGDa 212 (607) T TIGR02927 135 ATEVEMPELGESVTEGTVTRWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEILAEE-DDTVEVGAVLAKIGDA 212 (607) T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCEEEEECCCCCCCCCCCCCCEEEEEEECC-CCEEECCCEEEEECCC T ss_conf 56331644676202313787886339877633763564257206666887143688898177-8864315066542376 No 29 >PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Probab=99.94 E-value=4.1e-26 Score=202.75 Aligned_cols=75 Identities=51% Similarity=0.724 Sum_probs=72.6 Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE Q ss_conf 3566788888811578987741789762589859999537533343177786898998237885132697589994 Q gi|254780673|r 3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAIL 78 (467) Q Consensus 3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~ 78 (467) ++|+||+|||+|+||+|++|+|++||.|++||+||||||||+++|||||++|+|.+|++++|+ .|+||++||+|. T Consensus 2 ~~i~mP~lge~m~eg~i~~W~~~~Gd~V~~g~~l~eVeTDKa~~ei~a~~~G~l~~i~~~~G~-~v~VG~~ia~i~ 76 (324) T PRK11856 2 HEIKMPDLGEGMTEGEIVEWLVKEGDTVKKGDPLAEVETDKATVEVESPVAGTLRKILVEEGD-VVPVGAPIAVIV 76 (324) T ss_pred EEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCC-EECCCCEEEEEC T ss_conf 288789999995179999999089999789994999980766689806888399899608979-957999899944 No 30 >TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR014276 This entry represents the mainly actinobacterial clade of the E2 component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (IPR001078 from INTERPRO), one or two biotin domains (IPR000089 from INTERPRO) and an E3-component binding domain (IPR004167 from INTERPRO).. Probab=99.94 E-value=2.8e-27 Score=210.98 Aligned_cols=86 Identities=35% Similarity=0.543 Sum_probs=81.6 Q ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 97356678888881157898774178976258985999953753334317778689899823788513269758999437 Q gi|254780673|r 1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 1 M~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) |++=++||.||||+|||||++|||.+||+|+.|++|.||-|||+..|||||.+|||++|.++| ||+|.||..||+|.++ T Consensus 1 Ma~SV~MPaLGESVTEGTvt~WLKavGDTVE~DEPLLEVsTDKVDTEiPSPaaGVlleI~a~E-DdTVevGg~lAiIGe~ 79 (607) T TIGR02927 1 MAISVKMPALGESVTEGTVTRWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPAAGVLLEIKAEE-DDTVEVGGVLAIIGEE 79 (607) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECC-CCEEEECCEEEEECCC T ss_conf 974224766776202312666651068877104762100156206667976033266777367-7802305088986385 Q ss_pred CCCCCCC Q ss_conf 7772112 Q gi|254780673|r 81 GETALDI 87 (467) Q Consensus 81 ge~a~~~ 87 (467) ||..... T Consensus 80 gEasaea 86 (607) T TIGR02927 80 GEASAEA 86 (607) T ss_pred CHHHCCC T ss_conf 4000147 No 31 >KOG0557 consensus Probab=99.94 E-value=3.5e-26 Score=203.27 Aligned_cols=91 Identities=48% Similarity=0.757 Sum_probs=84.3 Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC Q ss_conf 35667888888115789877417897625898599995375333431777868989982378851326975899943777 Q gi|254780673|r 3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE 82 (467) Q Consensus 3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege 82 (467) ++|.||.|++||+||.|++|+||+||.++.||+|||||||||+|+++++++|.|++||++||+.+|+||.+||++.++.+ T Consensus 39 ~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e~ 118 (470) T KOG0557 39 KTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDED 118 (470) T ss_pred EEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCCC T ss_conf 38615778863357842667522577568886589996045123344036776545541357655668871599952633 Q ss_pred CCCCCCCCCCC Q ss_conf 72112222332 Q gi|254780673|r 83 TALDIDKMLLE 93 (467) Q Consensus 83 ~a~~~~~~~a~ 93 (467) +..+......+ T Consensus 119 di~~~k~~k~~ 129 (470) T KOG0557 119 DIAAFKLPKDE 129 (470) T ss_pred CHHHHHCCCCC T ss_conf 37776266521 No 32 >TIGR01347 sucB 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR006255 These sequences describe the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. Members include the mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus and are generally excluded from this group of sequences as are all examples of dihydrolipoamide acetyltransferase. ; GO: 0004149 dihydrolipoyllysine-residue succinyltransferase activity, 0006099 tricarboxylic acid cycle, 0045252 oxoglutarate dehydrogenase complex. Probab=99.93 E-value=5.9e-27 Score=208.65 Aligned_cols=76 Identities=38% Similarity=0.680 Sum_probs=73.4 Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC Q ss_conf 35667888888115789877417897625898599995375333431777868989982378851326975899943 Q gi|254780673|r 3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ 79 (467) Q Consensus 3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ 79 (467) ++|++|.|+||+|||||++|+||+||.|++||.||||||||+++||+||+||+|.+|+.+|| ++|.+|++|+.|.+ T Consensus 1 ~~ikvP~LaESvtegTva~W~KkvGD~V~~DE~iveiETDKV~lEV~Sp~dGvl~~~~~~eG-~TV~~g~~La~~~E 76 (435) T TIGR01347 1 IEIKVPELAESVTEGTVAEWHKKVGDTVKRDELIVEIETDKVVLEVPSPADGVLQEILEKEG-DTVTSGQVLAVLEE 76 (435) T ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCEEEEEECCCEEEEEECCCCCHHHHHHCCCC-CEECCCEEEEEEEC T ss_conf 96447887653553305541068887112277689752074467882885302174306898-88505507788823 No 33 >PRK11855 dihydrolipoamide acetyltransferase; Reviewed Probab=99.93 E-value=1.6e-25 Score=198.70 Aligned_cols=83 Identities=27% Similarity=0.398 Sum_probs=77.4 Q ss_pred CEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCC Q ss_conf 73566788888811578987741789762589859999537533343177786898998237885132697589994377 Q gi|254780673|r 2 PILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEG 81 (467) Q Consensus 2 ~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~eg 81 (467) .++++||+||++|+||+|++|+||+||.|++||+||||||||+++|||||++|+|.+|++++|+ .|+||++|++|..++ T Consensus 117 ~~ev~mP~lGe~m~eg~I~~W~~k~GD~V~~gd~l~eVETDKa~~Ev~sp~~G~l~ki~v~eGd-~v~VG~~ia~i~~~~ 195 (549) T PRK11855 117 VEEVKVPDIGEGIVEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGD-KVSVGSLLFKIEVAG 195 (549) T ss_pred CCEEECCCCCCCCCCEEEEEEECCCCCEECCCCCEEEEEECCCCEEEECCCCCEEEEEEECCCC-CCCCCCEEEEEECCC T ss_conf 5135468888874413776784078980136872578860553126743658754476505898-045798789972577 Q ss_pred CCCC Q ss_conf 7721 Q gi|254780673|r 82 ETAL 85 (467) Q Consensus 82 e~a~ 85 (467) +... T Consensus 196 ~~~~ 199 (549) T PRK11855 196 AAPA 199 (549) T ss_pred CCCC T ss_conf 7766 No 34 >PTZ00089 transketolase; Provisional Probab=99.92 E-value=3.9e-23 Score=181.89 Aligned_cols=288 Identities=15% Similarity=0.185 Sum_probs=198.0 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCH-HHHCCCCCEECCCCCHHHHHHHHHHHHH-CCCCCHHHH Q ss_conf 000012235544311365069993243445886-6532364-7540811101166662789989999887-188644566 Q gi|254780673|r 141 TVREALRDAIAEEMRRDKDVFIMGEEVAEYQGA-YKVTQGL-LQEFGCERVIDTPITEHGFAGIGIGASF-AGLKPIVEF 217 (467) Q Consensus 141 TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~-f~~t~gl-~~~fg~~R~~d~pi~E~~~~G~a~G~A~-~G~~Piv~~ 217 (467) ..|.+...++.......|.++.---|+...... .+-...+ .+.| +.|+|+.||.|++|.+++.|||+ .|+||++. T Consensus 356 ATR~asg~~L~~l~~~~p~ligGSADL~~Sn~T~l~~~~~~~~~~~-~gr~I~~GIREhaM~ai~NGialhgG~~P~~a- 433 (670) T PTZ00089 356 ATRNLSGIALNCINKIFPELIGGSADLSESNCTALKEEKDIKKDSF-ANKYIRFGVREHGMVAITNGISAYGGFEPFCA- 433 (670) T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEE- T ss_conf 1799999999999752885499746656786544446777777787-88567862078779999999997389824763- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCCCCHHHHH-HHHHHHHHHCCCEEEEEECCHHCCCHH Q ss_conf 6667899999999987886742117767888799830--2445764444332-168876322031386652210001055 Q gi|254780673|r 218 MTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP--NGAAARVAAQHSQ-CYAAWYSHVPGLKVVIPYTASDAKGLL 294 (467) Q Consensus 218 ~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p--~G~~~~~g~~Hs~-~~~~~~~~iPgl~V~~P~~~~d~~~ll 294 (467) -|+-|+-++.+||+..+- +++|+++..- ....+.+||||.- ...+.++.||||+|+.|+|+.+....+ T Consensus 434 TFlvFsdy~~~aiRlaAL---------~~l~vi~v~THDSi~vGEDGPTHQpvE~La~LR~iPnl~V~RPaD~~Et~~aw 504 (670) T PTZ00089 434 TFLNFYTYAFGALRLAAL---------SNHHIFCIATHDSVELGEDGPTHQPIEVLALLRATPNLNIIRPADGNEVSGAY 504 (670) T ss_pred EHHHHHHHHHHHHHHHHH---------HCCCEEEEEECCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH T ss_conf 089999997768888887---------56874899962561144778866668999998708996798408889999999 Q ss_pred HHHHHC-CCCEEEECCCCCCCCCCCCCCCCCEEC-C-CCCEEEEEC------CCCCEEEEHHHHHHHHHHHHHHHHCC-C Q ss_conf 565413-783476402123333345334663121-4-431144431------68745860257888888887531004-6 Q gi|254780673|r 295 KAAIRD-PNPVIFLENEILYGSSFEVPMVDDLVI-P-IGRARIHRQ------GSDVTIISFGIGMTYATKAAIELEKN-G 364 (467) Q Consensus 295 ~~ai~~-~~Pvi~le~~~ly~~~~~~p~~~~~~~-p-~Gk~~i~~~------G~ditii~~G~~~~~a~~aa~~L~~~-g 364 (467) +.+++. ++|++++=. ++ .+|...+... . ...+-++++ ..|++|++.|+.|..|++|++.|.++ | T Consensus 505 ~~al~~~~~P~~l~ls----Rq--~lp~l~~~~~~~~~~GaYi~~d~~~~~~~~~iiliatGSEV~lA~~aa~~L~~~~g 578 (670) T PTZ00089 505 LCHFKNLHTPTLIALC----RN--KVPHLKNTQAEQVLKGAYILEDFDNSNDKPKVILAGCGSELHLCFEAKEILKEQHN 578 (670) T ss_pred HHHHHCCCCCEEEEEE----CC--CCCCCCCCCHHHCCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCC T ss_conf 9998677998799971----67--78776766443335777898755466899888999652899999999999855339 Q ss_pred CCEEEEECCCCCCCCHH--HHHHHHH--HCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCC Q ss_conf 75279733006857999--9999998--7198--99995788767678999999999677642898299717778--888 Q gi|254780673|r 365 IDAELIDLRTIRPMDWQ--TIFESVK--KTGR--LVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMP 436 (467) Q Consensus 365 i~~~vid~r~l~Pld~~--~i~~sv~--kt~~--~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P 436 (467) |++.||.+.|..-||.. ...++|- +..+ .+.||.+.. .||...+ . ..++..+- .-| T Consensus 579 i~vrVVSmP~~elF~~Q~~~y~~~vl~~~~~~~~~v~iEa~~~-~gw~~~~------------~---~~iGi~~FG~Sap 642 (670) T PTZ00089 579 LNVRIVSFPSWNLFKKQPEDYQQSVMMHHDAKLPRFYIEPAST-HGFDTYF------------N---VYIGINQFGYSAP 642 (670) T ss_pred CCEEEEECCCHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCC-CCHHHHC------------C---EEECCCCCCCCCC T ss_conf 8279996887599984579999862777899842799982445-6848875------------9---8963487778899 Q ss_pred CCHHHHHHCCCCHHHHHHHHHHHHCC Q ss_conf 89667656089989999999998502 Q gi|254780673|r 437 YAANLEKLALPNVDEIIESVESICYK 462 (467) Q Consensus 437 ~~~~le~~~~p~~~~I~~av~~v~~~ 462 (467) +..|-+++-.+++.|+++|++.+.. T Consensus 643 -~~~l~~~fG~t~e~I~~~i~~~l~~ 667 (670) T PTZ00089 643 -KNKIWEHLGFTPENIVQKVLAFIEA 667 (670) T ss_pred -HHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf -8999999598999999999999987 No 35 >PRK11854 aceF dihydrolipoamide acetyltransferase; Validated Probab=99.92 E-value=2.5e-24 Score=190.24 Aligned_cols=83 Identities=25% Similarity=0.326 Sum_probs=77.0 Q ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 97356678888881157898774178976258985999953753334317778689899823788513269758999437 Q gi|254780673|r 1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 1 M~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) |+++|+||+||+ +||+|++|||++||+|++||+|+|||||||+||||||++|+|.+|++++| |+|.||++|++|.++ T Consensus 1 m~~~i~~Pd~g~--~e~~v~~~l~~~Gd~v~~~~~l~~vetDKa~~evps~~~G~~~~i~v~~g-d~v~~g~~l~~i~~~ 77 (630) T PRK11854 1 MAIEIKVPDIGA--DEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVG-DKVDTGALIMIFESA 77 (630) T ss_pred CCEEEECCCCCC--CEEEEEEEECCCCCEECCCCCEEEEECCCCCEECCCCCCCEEEEEEECCC-CCCCCCCEEEEEECC T ss_conf 970676677778--80699998106898776899579998366233666888838999985689-812789868997057 Q ss_pred CCCCCC Q ss_conf 777211 Q gi|254780673|r 81 GETALD 86 (467) Q Consensus 81 ge~a~~ 86 (467) ++.... T Consensus 78 ~~~~~~ 83 (630) T PRK11854 78 EGAADA 83 (630) T ss_pred CCCCCC T ss_conf 666666 No 36 >TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006256 This group of sequences are a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and percent identity (UPGMA) trees. Members contain two or three copies of the lipoyl-binding domain. Escherichia coli AceF is included in this set while mitochondrial and some other bacterial forms are excluded. dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006096 glycolysis, 0045254 pyruvate dehydrogenase complex. Probab=99.88 E-value=3.3e-22 Score=175.40 Aligned_cols=201 Identities=19% Similarity=0.301 Sum_probs=128.1 Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC Q ss_conf 35667888888115789877417897625898599995375333431777868989982378851326975899943777 Q gi|254780673|r 3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE 82 (467) Q Consensus 3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege 82 (467) .+|++|+.|....++++++-||++||+|++||.|.+||||||+|||||+++|+|+++.|+.|| .|++|..|.+|..++. T Consensus 207 ~~v~vPDiGdn~~~~~V~evlV~vGDtV~~~QslItLE~DKA~~EvPa~asGvv~~v~v~vGD-~v~~G~~il~L~~~~s 285 (655) T TIGR01348 207 QEVKVPDIGDNIEKVEVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGD-SVSTGDLILVLSVAGS 285 (655) T ss_pred EEEECCCCCCCCCCEEEEEEEECCCCEECCCCCEEEEECCEEEEEECCCCCCEEEEEEEEECC-EECCCCEEEEEEECCC T ss_conf 154426537777750279999543777647886788706714787468985237899986566-7057888999710567 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 721122223321234422233223332223322100000-0112333310000000000000012235544311365069 Q gi|254780673|r 83 TALDIDKMLLEKPDVAISPSSKNTTLVFSNEDNDKVDHQ-KSKNDIQDSSFAHAPTSSITVREALRDAIAEEMRRDKDVF 161 (467) Q Consensus 83 ~a~~~~~~~a~~~~aa~aaa~~~~s~~~~~a~~~a~~~~-~a~~~~~~~~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~ 161 (467) .......+..+.+.. .+++..+..++++++.+++.++. ....+..+....+.|.. ..-.++|. |+++ T Consensus 286 tp~t~~~p~~a~p~~-~spa~~~~~aAa~pA~~~A~~~~p~~~~t~~~~~~~GrPvv--~A~P~vR~-LARe-------- 353 (655) T TIGR01348 286 TPATAEAPASAEPAA-QSPAAEQKEAAAAPAAAKAEAPAPVDAGTQNPAKVDGRPVV--HAAPAVRR-LARE-------- 353 (655) T ss_pred CCCCHHCCCCCCCCC-CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE--ECCHHHHH-HHHH-------- T ss_conf 766413563458745-35034166767777658888778767665687623872300--17628899-9888-------- Q ss_pred EEECCCCCCCC---CCCCCCCHHHHCCCCCEECCCCCHH----HHHHHHHHHHHCCCCCHH--HHHHH Q ss_conf 99324344588---6653236475408111011666627----899899998871886445--66666 Q gi|254780673|r 162 IMGEEVAEYQG---AYKVTQGLLQEFGCERVIDTPITEH----GFAGIGIGASFAGLKPIV--EFMTF 220 (467) Q Consensus 162 ~~gedv~~~~g---~f~~t~gl~~~fg~~R~~d~pi~E~----~~~G~a~G~A~~G~~Piv--~~~~~ 220 (467) ||=|+..-.| .-++++.=.++| -+.-+-|+|-|+ +-++.+.| ..|+-|+- .|.-| T Consensus 354 -~Gvdl~~vkGtg~~GRI~~EDVq~~-v~~~~GtGiPe~rA~aa~a~a~gG--~~~~~P~P~VdFsKF 417 (655) T TIGR01348 354 -FGVDLSKVKGTGKKGRILREDVQKF-VKEAVGTGIPEKRAKAAAASAAGG--IPGLLPWPEVDFSKF 417 (655) T ss_pred -HCCEEEEEECCCCCCCCCHHHHHHH-HCCCCCCCCCCCCCCCCCCHHCCC--CCCCCCCCCCCCCCC T ss_conf -2701111013688886253579998-064336787532255331102031--004687785474325 No 37 >KOG0559 consensus Probab=99.86 E-value=2.6e-22 Score=176.14 Aligned_cols=77 Identities=31% Similarity=0.604 Sum_probs=73.3 Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 356678888881157898774178976258985999953753334317778689899823788513269758999437 Q gi|254780673|r 3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) .++++|.++||++||+|.+|+|++||.|++|+.||||||||.++||+||++|+|.++|+++| ++|..|+.++.|... T Consensus 73 vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~g-dtV~~g~~la~i~~g 149 (457) T KOG0559 73 VTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDG-DTVTPGQKLAKISPG 149 (457) T ss_pred EEEECCCCCCCCCCCHHHHHHHCCCCCCCCCHHHEEEECCCEEEECCCCCCCEEEEEECCCC-CCCCCCCEEEEECCC T ss_conf 47746885121342419999647464213001311542153233136887642457740789-750478645773588 No 38 >PRK11854 aceF dihydrolipoamide acetyltransferase; Validated Probab=99.85 E-value=8.6e-21 Score=165.41 Aligned_cols=79 Identities=27% Similarity=0.318 Sum_probs=71.7 Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC Q ss_conf 35667888888115789877417897625898599995375333431777868989982378851326975899943777 Q gi|254780673|r 3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE 82 (467) Q Consensus 3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege 82 (467) .+|+||.+|+ +|++|++|+|++||.|++||+||||||||++||||||++|+|.+|++++| ++|+||++|++|.+.++ T Consensus 106 ~~~~~p~~g~--~~~~v~~~~~~~Gd~v~~~~~~~~vetdKa~~evps~~~G~~~~i~~~~g-~~v~~g~~i~~i~~~~~ 182 (630) T PRK11854 106 KDVHVPDIGS--DEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVG-DKVSTGSLIMVFEVAGE 182 (630) T ss_pred CEEECCCCCC--CCEEEEEEEECCCCEEECCCCEEEEECCCEEEEEECCCCCEEEEECCCCC-CEECCCCEEEEECCCCC T ss_conf 2575788788--73269999724798872388157875252468852688816887126899-88447976788536788 Q ss_pred CC Q ss_conf 72 Q gi|254780673|r 83 TA 84 (467) Q Consensus 83 ~a 84 (467) .. T Consensus 183 ~~ 184 (630) T PRK11854 183 AA 184 (630) T ss_pred CC T ss_conf 77 No 39 >TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006257 This group of sequences represent one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria, but not the Gram-positive bacteria.; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006090 pyruvate metabolic process, 0045254 pyruvate dehydrogenase complex. Probab=99.84 E-value=1.1e-20 Score=164.67 Aligned_cols=337 Identities=22% Similarity=0.280 Sum_probs=172.7 Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC Q ss_conf 35667888888115789877417897625898599995375333431777868989982378851326975899943777 Q gi|254780673|r 3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE 82 (467) Q Consensus 3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege 82 (467) ..+.||.|++||+-|+|.+|.||+||.+++||.|+||||||||++.+-...|.|.+|||.+|+..|+.|+|+|+|....+ T Consensus 128 ~~V~lPALSP~M~~G~~~~W~KK~G~~~~~GD~~AE~ETDKAT~~F~~~~~GYLAKILVP~GT~~~~~~~P~CIIV~~~~ 207 (584) T TIGR01349 128 KVVLLPALSPSMETGTVARWEKKVGDKLKEGDLLAEVETDKATIDFEVEDEGYLAKILVPEGTRDVQLNTPLCIIVKKKE 207 (584) T ss_pred CEEECCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCEEECCEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCC T ss_conf 32324565765566740000134576223375255542252022214635761899872888756637886489972600 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC Q ss_conf 72112222332123442223322333---222332210000001123333100000000000000122355443113650 Q gi|254780673|r 83 TALDIDKMLLEKPDVAISPSSKNTTL---VFSNEDNDKVDHQKSKNDIQDSSFAHAPTSSITVREALRDAIAEEMRRDKD 159 (467) Q Consensus 83 ~a~~~~~~~a~~~~aa~aaa~~~~s~---~~~~a~~~a~~~~~a~~~~~~~~~~~~~~~~~TvRea~~~a~~e~m~~d~~ 159 (467) +...++.....+.........+...+ .+..++.+..+.+..+......... ..++-+-. |-+-||.+ .+ T Consensus 208 D~~~FADY~~~E~~~~~~q~~~~~~~~~s~~~~a~~~~~~~~~~~~~~~~~~~~---~GriFAsP-LAk~LA~e----kg 279 (584) T TIGR01349 208 DIDKFADYRVEEVSDLKSQTAPPSAPHYSKKSPAPAEQAPEPSSPAPLSDKESK---DGRIFASP-LAKKLAKE----KG 279 (584) T ss_pred CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCEECCH-HHHHHHHH----CC T ss_conf 123442776311024667788777787677756776546788877666556688---88178276-89888875----39 Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHCCCC-------CEECCCCCHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 6999324344588665323647540811-------101166662789989999----88718864456666678999999 Q gi|254780673|r 160 VFIMGEEVAEYQGAYKVTQGLLQEFGCE-------RVIDTPITEHGFAGIGIG----ASFAGLKPIVEFMTFNFAMQAID 228 (467) Q Consensus 160 ~~~~gedv~~~~g~f~~t~gl~~~fg~~-------R~~d~pi~E~~~~G~a~G----~A~~G~~Piv~~~~~~f~~~a~d 228 (467) +=| .+|.--|=--+++|-=.++|-|. -.--.+-+-+...+.+.+ -|-.+..| +.+..|--.-.+ T Consensus 280 idL--~~v~GsGP~GRI~K~Die~~~p~~aakPaG~~~~a~~~~~~a~tp~~~tssttA~~~~~~---~~tg~Y~d~P~s 354 (584) T TIGR01349 280 IDL--SAVAGSGPNGRIVKKDIESFVPKSAAKPAGKPASANEAAAAAKTPAAKTSSTTAAKAAAP---VSTGSYEDVPLS 354 (584) T ss_pred CCC--CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC---CCCCCEEECCCC T ss_conf 722--122240867847743110268754316665413331112036677532332223567788---888644667888 Q ss_pred HHHHHHHHHHHHCCCCCCCCEE---EEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEE---------ECCHHC--CCHH Q ss_conf 9998788674211776788879---9830244576444433216887632203138665---------221000--1055 Q gi|254780673|r 229 QIINSAAKTRYMSGGQITTSIV---FRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIP---------YTASDA--KGLL 294 (467) Q Consensus 229 qi~n~~ak~~~~~gg~~~~p~v---~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P---------~~~~d~--~~ll 294 (467) -||--.|+-+.-| ++-.|=- ++.-+ .-+..+.. -|+...+ =+-+|+ |.+. T Consensus 355 niRk~IA~RL~eS--Kq~iPHyYvs~~~~~-----------~~LL~LR~---~LNa~~~~~~GkP~~KlSVND~iikA~a 418 (584) T TIGR01349 355 NIRKIIAKRLLES--KQTIPHYYVSVECNV-----------DKLLKLRK---ELNAMAEEDDGKPRYKLSVNDFIIKASA 418 (584) T ss_pred CHHHHHHHHHHHH--HCCCCEEEEEEEEEH-----------HHHHHHHH---HHHHHCCCCCCCCEEEEEECHHHHHHHH T ss_conf 3268999999887--568860799998861-----------06899999---9984467888885056660007999999 Q ss_pred HHHHHCCCC-EEEEC--CCCCCCCCCCCCC---CCC-EECCCCCEEEEECCCCCEEEEHH-HHHHHHHHHHHH-HHC--- Q ss_conf 565413783-47640--2123333345334---663-12144311444316874586025-788888888753-100--- Q gi|254780673|r 295 KAAIRDPNP-VIFLE--NEILYGSSFEVPM---VDD-LVIPIGRARIHRQGSDVTIISFG-IGMTYATKAAIE-LEK--- 362 (467) Q Consensus 295 ~~ai~~~~P-vi~le--~~~ly~~~~~~p~---~~~-~~~p~Gk~~i~~~G~ditii~~G-~~~~~a~~aa~~-L~~--- 362 (467) .++-+-|+= .-+.+ +-++|.+..++-- .+. ...| |+|.-+---|-..+ .|..++.+|.+. |.- T Consensus 419 ~Al~~vP~aN~~W~~~~~~Ir~y~~vDiSVAVatP~GliTP-----IVr~a~~Kgl~~IS~e~K~L~~rAr~~KL~P~Ef 493 (584) T TIGR01349 419 LALREVPEANSSWTDVDDVIRRYKNVDISVAVATPDGLITP-----IVRNADAKGLSEISNEVKDLAKRARENKLKPEEF 493 (584) T ss_pred HHHHHCCCEEEEECCCCCEEEEECEEEEEEEEECCCCCCCC-----CEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 99872990253534777606861201488776568882545-----0721572467899999999999986437883245 Q ss_pred CCCCEEEEECC Q ss_conf 46752797330 Q gi|254780673|r 363 NGIDAELIDLR 373 (467) Q Consensus 363 ~gi~~~vid~r 373 (467) +|=..+|=||= T Consensus 494 qGGTftISNLG 504 (584) T TIGR01349 494 QGGTFTISNLG 504 (584) T ss_pred CCCCEEEECCC T ss_conf 48875671231 No 40 >TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006256 This group of sequences are a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and percent identity (UPGMA) trees. Members contain two or three copies of the lipoyl-binding domain. Escherichia coli AceF is included in this set while mitochondrial and some other bacterial forms are excluded. dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006096 glycolysis, 0045254 pyruvate dehydrogenase complex. Probab=99.83 E-value=2.6e-20 Score=162.01 Aligned_cols=81 Identities=27% Similarity=0.408 Sum_probs=75.8 Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC Q ss_conf 35667888888115789877417897625898599995375333431777868989982378851326975899943777 Q gi|254780673|r 3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE 82 (467) Q Consensus 3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege 82 (467) +||++|+.|..+.+|+|++.||++||+|++||.|.+||||||+|||||+.+|+|++|.|+.| |+++.|.+|++|+.++. T Consensus 1 ~e~~vPDiG~n~~~g~v~evLV~~GD~V~~~Qslit~E~DKA~mEvPss~AG~ik~ikvkVG-Dt~~~G~~i~~l~~~~g 79 (655) T TIGR01348 1 KEIKVPDIGDNIEEGEVIEVLVKVGDKVEAGQSLITLESDKASMEVPSSKAGIIKEIKVKVG-DTLKEGDVIALLEVSAG 79 (655) T ss_pred CEECCCCCCCCCCCEEEEEEEECCCCEECCCCCEEEECCCEEEEEECCCCCCEEEEEEEEEC-CCCCCCCEEEEECCCCC T ss_conf 90005751466775138999868897432687468870671278406899973788975446-65477878999716653 Q ss_pred CC Q ss_conf 72 Q gi|254780673|r 83 TA 84 (467) Q Consensus 83 ~a 84 (467) +. T Consensus 80 ~a 81 (655) T TIGR01348 80 SA 81 (655) T ss_pred CC T ss_conf 21 No 41 >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] Probab=99.82 E-value=2.5e-18 Score=148.11 Aligned_cols=292 Identities=20% Similarity=0.220 Sum_probs=202.9 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCHH-HHCCCCCEECCCCCHHHHHHHHHHHHHCC-CCCH Q ss_conf 000000012235544311365069993243445886-65323647-54081110116666278998999988718-8644 Q gi|254780673|r 138 SSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGA-YKVTQGLL-QEFGCERVIDTPITEHGFAGIGIGASFAG-LKPI 214 (467) Q Consensus 138 ~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~-f~~t~gl~-~~fg~~R~~d~pi~E~~~~G~a~G~A~~G-~~Pi 214 (467) ..+.-|.+..++|...-...|.++----|++...-. -+...-+. +.| ..|.|..||.|.+|..+.-|||+.| ++|+ T Consensus 352 ~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGialhGg~~py 430 (663) T COG0021 352 KSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIALHGGFIPY 430 (663) T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEHHHHHHHHHHHHHHHCCCEEE T ss_conf 5523389999999999754734346672026676430146677787787-887058855887799998768874686222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCCCCHHHHHHH--HHHHHHHCCCEEEEEECCHHC Q ss_conf 5666667899999999987886742117767888799830--244576444433216--887632203138665221000 Q gi|254780673|r 215 VEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP--NGAAARVAAQHSQCY--AAWYSHVPGLKVVIPYTASDA 290 (467) Q Consensus 215 v~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p--~G~~~~~g~~Hs~~~--~~~~~~iPgl~V~~P~~~~d~ 290 (467) .. -|+.|.-++..+|+-.| -+++|+++..- .-+.+++|||| |-+ -+.|+.||||.|+-|+|..+. T Consensus 431 gg-TFlvFsdY~r~AiRlaA---------Lm~l~~~~V~THDSIgvGEDGPTH-qPiEqLa~LRaiPN~~V~RPaD~~Et 499 (663) T COG0021 431 GG-TFLVFSDYARPAVRLAA---------LMGLPVIYVFTHDSIGVGEDGPTH-QPVEQLASLRAIPNLSVIRPADANET 499 (663) T ss_pred CC-EEHHHHHHHHHHHHHHH---------HHCCCEEEEEECCCEECCCCCCCC-CCHHHHHHHHCCCCCEEEECCCHHHH T ss_conf 20-34021753358799998---------608981899946712207878877-76888888652688604732883789 Q ss_pred CCHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCC--CEECCCCCEEEEEC----CCCCEEEEHHHHHHHHHHHHHHHHCC Q ss_conf 1055565413-78347640212333334533466--31214431144431----68745860257888888887531004 Q gi|254780673|r 291 KGLLKAAIRD-PNPVIFLENEILYGSSFEVPMVD--DLVIPIGRARIHRQ----GSDVTIISFGIGMTYATKAAIELEKN 363 (467) Q Consensus 291 ~~ll~~ai~~-~~Pvi~le~~~ly~~~~~~p~~~--~~~~p~Gk~~i~~~----G~ditii~~G~~~~~a~~aa~~L~~~ 363 (467) ...++.|+.. ++|+++. |-+|+ +|..+ +.......+-++++ ..|++||++|+-|.+|++|++.|+++ T Consensus 500 ~~aw~~Al~~~~gPt~Li----ltRQn--lp~l~~t~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~ 573 (663) T COG0021 500 AAAWKYALERKDGPTALI----LTRQN--LPVLERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAE 573 (663) T ss_pred HHHHHHHHHCCCCCEEEE----EECCC--CCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHC T ss_conf 999999985678986999----96677--766577752212575279840577899889994665999999999999865 Q ss_pred CCCEEEEECCCCCCCCHH--HHHHHHHHCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCC Q ss_conf 675279733006857999--99999987198--99995788767678999999999677642898299717778--8888 Q gi|254780673|r 364 GIDAELIDLRTIRPMDWQ--TIFESVKKTGR--LVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPY 437 (467) Q Consensus 364 gi~~~vid~r~l~Pld~~--~i~~sv~kt~~--~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~ 437 (467) ||.+.||.+-|...||.. ...+++-.... .|.||=+. ..|+...+ ..+=..|+...- .-| T Consensus 574 ~i~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~-~~~W~ky~------------g~~g~~ig~~~FG~Sap- 639 (663) T COG0021 574 GIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGS-ALGWYKYV------------GLDGAVIGMDSFGASAP- 639 (663) T ss_pred CCCEEEEECCCHHHHHCCCHHHHHHHCCCCCCCEEEEEECC-CCCHHHHC------------CCCCCEEEECCCCCCCC- T ss_conf 98169994665588870899887764567766438887322-36636541------------88872884256767898- Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHC Q ss_conf 966765608998999999999850 Q gi|254780673|r 438 AANLEKLALPNVDEIIESVESICY 461 (467) Q Consensus 438 ~~~le~~~~p~~~~I~~av~~v~~ 461 (467) +..|-++|-.+++.|++++++++. T Consensus 640 ~~~l~~~fGft~e~vv~~~~~~l~ 663 (663) T COG0021 640 GDELFKEFGFTVENVVAKAKSLLN 663 (663) T ss_pred HHHHHHHHCCCHHHHHHHHHHHHC T ss_conf 789999959999999999999649 No 42 >cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Probab=99.80 E-value=2.3e-19 Score=155.36 Aligned_cols=72 Identities=35% Similarity=0.681 Sum_probs=69.7 Q ss_pred EECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE Q ss_conf 6678888881157898774178976258985999953753334317778689899823788513269758999 Q gi|254780673|r 5 VTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI 77 (467) Q Consensus 5 i~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i 77 (467) |+||+||++|+||+|++|+|++||.|++||+||+|||||+.+|++||.+|+|.+|++++| +.|++|++|+.| T Consensus 2 i~~P~lg~~~~eg~I~~~~v~~Gd~V~~Gd~l~~iEa~K~~~ei~ap~~G~v~~i~v~~G-~~V~~G~~l~~I 73 (73) T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEG-TKVEGDTPLVKI 73 (73) T ss_pred EECCCCCCCCEEEEEEEEEECCCCEECCCCEEEEEEEEEEEEEEECCCCEEEEEEEECCC-CEECCCCEEEEC T ss_conf 777899998307999999926999997999999999500569986699989999995898-997899999979 No 43 >cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Probab=99.77 E-value=1.5e-18 Score=149.60 Aligned_cols=74 Identities=47% Similarity=0.756 Sum_probs=71.2 Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE Q ss_conf 356678888881157898774178976258985999953753334317778689899823788513269758999 Q gi|254780673|r 3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI 77 (467) Q Consensus 3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i 77 (467) ++|+||+||++|+||+|.+|+|++||.|++||+||++||||+++|++||.+|+|.++++++| +.|++|++||+| T Consensus 1 ~~i~~P~~g~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~a~~~G~v~~i~~~~G-~~v~~G~~l~~i 74 (74) T cd06849 1 TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEG-DTVPVGQVIAVI 74 (74) T ss_pred CCEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCC-CEECCCCEEEEC T ss_conf 91775889998506999999927989997899999998585078410798999999987899-998899999979 No 44 >pfam00364 Biotin_lipoyl Biotin-requiring enzyme. This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the model may not recognize the Glycine cleavage system H proteins. Probab=99.73 E-value=9.2e-18 Score=144.17 Aligned_cols=73 Identities=33% Similarity=0.592 Sum_probs=69.7 Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE Q ss_conf 356678888881157898774178976258985999953753334317778689899823788513269758999 Q gi|254780673|r 3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI 77 (467) Q Consensus 3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i 77 (467) ++|+||.||++|+||+ ++|+|++||.|++||+||+|||||+.++|+||.+|+|.++++++| +.|++|++|+.| T Consensus 1 tei~~P~lG~~~~~~~-~~w~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~i~~i~v~~G-~~V~~G~~l~~I 73 (73) T pfam00364 1 TEIKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEG-DTVEVGDPLAKI 73 (73) T ss_pred CCEECCCCCCCCEECC-EEEEECCCCEECCCCEEEEEEECCCCCEECCCCCEEEEEEEECCC-CEECCCCEEEEC T ss_conf 9347789879737234-848658989992899899999665352250898889999997998-998999999979 No 45 >TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity. Probab=99.64 E-value=1.4e-14 Score=121.76 Aligned_cols=291 Identities=16% Similarity=0.236 Sum_probs=201.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----CCCC--CCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCC-- Q ss_conf 000001223554431136506999324344-----5886--6532364754081110116666278998999988718-- Q gi|254780673|r 140 ITVREALRDAIAEEMRRDKDVFIMGEEVAE-----YQGA--YKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAG-- 210 (467) Q Consensus 140 ~TvRea~~~a~~e~m~~d~~~~~~gedv~~-----~~g~--f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G-- 210 (467) ..-|.+..+.|-......|.++----|++. +++. |...+.=..+| ..|+|..||.|.+|..+.-|||+-| T Consensus 355 ~ATR~~s~~~Ln~~~~~~p~l~GGSADLa~SN~T~~~~~~df~~~~~~~~n~-~GrYi~~GvREfaMgAI~NGiAlhGag 433 (675) T TIGR00232 355 LATRKYSQEVLNAIANVLPELLGGSADLAPSNLTKLKGSGDFQLHENPLGNY-AGRYIHYGVREFAMGAIMNGIALHGAG 433 (675) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHCHHHCEEECCCCCCCCCCCCCCCC-CCCEEEEEEEECHHHHHHHHHHHHCCC T ss_conf 8889999999998763152011553011100133504764454352444234-675488732304478999999983588 Q ss_pred CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCCCCHHHHHHHH--HHHHHHCCCEEEEEE Q ss_conf 8644566666-7899999999987886742117767888799830--2445764444332168--876322031386652 Q gi|254780673|r 211 LKPIVEFMTF-NFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP--NGAAARVAAQHSQCYA--AWYSHVPGLKVVIPY 285 (467) Q Consensus 211 ~~Piv~~~~~-~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p--~G~~~~~g~~Hs~~~~--~~~~~iPgl~V~~P~ 285 (467) ++|+.. || .|.-++..-|+-.| -+++|+++..- .=+.+++|||| |-+| +.||.||||.|.=|+ T Consensus 434 ~~p~Gg--TFL~F~dY~~~AiRLaA---------Lm~~~~~~V~THDSIgvGEDGPTH-QP~EqLa~LRa~PN~~vwRP~ 501 (675) T TIGR00232 434 FKPYGG--TFLVFVDYARPAIRLAA---------LMKLPVIYVYTHDSIGVGEDGPTH-QPIEQLASLRAIPNLSVWRPA 501 (675) T ss_pred CCCCCC--HHHHHHHHHHHHHHHHH---------HHCCCCEEEEECCEECCCCCCCCC-CCHHHHHHHHHCCCCEEECCC T ss_conf 632541--46789986558999999---------717890899974401138788847-702230233220353162378 Q ss_pred CCHHCCCHHHHHHH---CCCCEEEECCCCCCCCCCCCCCCC--CEEC-CCCC-EEEEE--CC-CCCEEEEHHHHHHHHHH Q ss_conf 21000105556541---378347640212333334533466--3121-4431-14443--16-87458602578888888 Q gi|254780673|r 286 TASDAKGLLKAAIR---DPNPVIFLENEILYGSSFEVPMVD--DLVI-PIGR-ARIHR--QG-SDVTIISFGIGMTYATK 355 (467) Q Consensus 286 ~~~d~~~ll~~ai~---~~~Pvi~le~~~ly~~~~~~p~~~--~~~~-p~Gk-~~i~~--~G-~ditii~~G~~~~~a~~ 355 (467) |..|.-..++.|+. .+.|.+. +|=+| .+|..+ .-.+ .+-| +-|+. ++ =||.||+.|+=|..|++ T Consensus 502 D~~E~aaa~~~a~~kas~~~Pt~L----~LtRQ--nLp~l~~T~~~~~~~~KGgYv~~d~~~~Pd~iliAtGSEV~La~~ 575 (675) T TIGR00232 502 DGNETAAAYKYALEKASQDAPTVL----ILTRQ--NLPQLERTESSLEKVLKGGYVLKDSKGEPDIILIATGSEVQLAVE 575 (675) T ss_pred CCHHHHHHHHHHHHHHHCCCCEEE----EEECC--CCCCCCCCHHHHHHHHCCCCEEECCCCCCEEEEEECCCHHHHHHH T ss_conf 732789999999996205898079----98057--777766427899986339807872587940899852736899999 Q ss_pred HHHHHHCCCCCEEEEECCCCCCCCH--HHHHHHHHHCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCC Q ss_conf 8753100467527973300685799--999999987198--999957887676789999999996776428982997177 Q gi|254780673|r 356 AAIELEKNGIDAELIDLRTIRPMDW--QTIFESVKKTGR--LVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGR 431 (467) Q Consensus 356 aa~~L~~~gi~~~vid~r~l~Pld~--~~i~~sv~kt~~--~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~ 431 (467) |++.|.++||.++||.|-++.=||. +..++||=+.+- +|+||=+. ..+|+... .+...-..||.. T Consensus 576 a~~~L~~~~~kvrVVS~P~~~~f~~Qd~~Y~~svlp~~V~k~~~~Ea~~-~~~Wyky~----------~~~g~H~~~G~~ 644 (675) T TIGR00232 576 AAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTKRLAIEASA-AFEWYKYA----------GLEGKHAVLGID 644 (675) T ss_pred HHHHHHHCCCCEEEEECCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHH-HCCCHHHC----------CCCCCEEEECCC T ss_conf 9999985498579996586466661228988730720123546653475-30111111----------545640055120 Q ss_pred C--CCCCCCHHHHHHCCCCHHHHHHHHHHHHC Q ss_conf 7--88888966765608998999999999850 Q gi|254780673|r 432 D--VPMPYAANLEKLALPNVDEIIESVESICY 461 (467) Q Consensus 432 d--~p~P~~~~le~~~~p~~~~I~~av~~v~~ 461 (467) . ---| +..+=+.+--+++.|++.++++.+ T Consensus 645 ~FG~Sa~-g~~~~~~fGF~v~nv~~~ak~l~n 675 (675) T TIGR00232 645 SFGESAP-GDKVFEKFGFTVENVVAKAKKLLN 675 (675) T ss_pred CCCCCCC-HHHHHHHCCCCHHHHHHHHHHHHC T ss_conf 3688785-004754148887899999999609 No 46 >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Probab=99.57 E-value=4e-13 Score=111.63 Aligned_cols=241 Identities=23% Similarity=0.271 Sum_probs=149.5 Q ss_pred CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCCCCH Q ss_conf 1011666627899899998871886445666667899999999987886742117767888799----830244576444 Q gi|254780673|r 188 RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF----RGPNGAAARVAA 263 (467) Q Consensus 188 R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~----r~p~G~~~~~g~ 263 (467) .++.+- +|.+.+++++|+|++|.|-+..-+--.| .+.++++- |..+. .+|+|+ |+ |...++-. T Consensus 50 ~~~~~E-~E~aA~~~~~GAs~aGaRa~taTSg~Gl-~lm~E~l~-------~a~~~--e~P~Vi~~~~R~--gpstglpt 116 (377) T PRK08659 50 VFIQME-DEIASMAAIIGASWAGAKAMTATSGPGF-SLMQENIG-------YAAMT--ETPCVIVNVQRG--GPSTGQPT 116 (377) T ss_pred EEEECC-CHHHHHHHHHHHHHHCCCEEEEECCCCH-HHHHHHHH-------HHHHC--CCCEEEEEEECC--CCCCCCCC T ss_conf 899727-5899999999998738866886457518-88888777-------87642--787799996347--78888877 Q ss_pred HHHHHH--HHHHH-H-HCCCEEEEEECCHHCCCHHHHHH----HCCCCEEEECCCCCC-C-CCCCCCCCCC--------- Q ss_conf 433216--88763-2-20313866522100010555654----137834764021233-3-3345334663--------- Q gi|254780673|r 264 QHSQCY--AAWYS-H-VPGLKVVIPYTASDAKGLLKAAI----RDPNPVIFLENEILY-G-SSFEVPMVDD--------- 324 (467) Q Consensus 264 ~Hs~~~--~~~~~-~-iPgl~V~~P~~~~d~~~ll~~ai----~~~~Pvi~le~~~ly-~-~~~~~p~~~~--------- 324 (467) .++|+. .+.|. | =-++-|++|+|++|++.+...|+ ++..||+++-+..+= . ...++|+.++ T Consensus 117 ~~~q~D~~~~~~~~hGd~~~ivl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~Dg~lsh~~e~v~~p~~~~v~~~~~~~~ 196 (377) T PRK08659 117 KPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKAP 196 (377) T ss_pred CCCCHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCHHHCCCCCCCCC T ss_conf 64626578640467777773999269879999999999999997688989971661024111054588665342322244 Q ss_pred ------EE---------CC---CC--------------------------------------------CEEEEE-CCCCC Q ss_conf ------12---------14---43--------------------------------------------114443-16874 Q gi|254780673|r 325 ------LV---------IP---IG--------------------------------------------RARIHR-QGSDV 341 (467) Q Consensus 325 ------~~---------~p---~G--------------------------------------------k~~i~~-~G~di 341 (467) |. .| +| ..+..+ +..|+ T Consensus 197 ~~~~~~~~~y~~~~~~v~p~~~~g~~~~~~~~g~~h~e~g~~~~~~e~~~~~~~~~~~K~~~~~~~~~~~e~~~~edAdi 276 (377) T PRK08659 197 KVPPEAYKPFADPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEV 276 (377) T ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCE T ss_conf 47865448888887889988878767357732421234567445899999999999999999875236201424899989 Q ss_pred EEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 58602578888888875310046752797330068579999999998719899995788767678999999999677642 Q gi|254780673|r 342 TIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYL 421 (467) Q Consensus 342 tii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L 421 (467) .||+||++...+.+|.+.|.++|+.+.++.+|++.||+.+.|.+.+++.++++++|-+. |-+..+|...+ .- T Consensus 277 ~IV~~GS~~~~~~eAvd~Lr~~G~kvg~l~ir~l~PfP~~~i~~~l~~~k~ViVvE~N~--GQl~~~i~~~~------~~ 348 (377) T PRK08659 277 VVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMNL--GQMSLEVERVV------KG 348 (377) T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCCC--HHHHHHHHHHH------CC T ss_conf 99996855789999999999649868899972206999899999985699899980775--68999999972------89 Q ss_pred CCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 898299717778888896676560899899999999985 Q gi|254780673|r 422 DAPILTITGRDVPMPYAANLEKLALPNVDEIIESVESIC 460 (467) Q Consensus 422 ~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~av~~v~ 460 (467) ..++..|...|= . -.+.++|+++++++. T Consensus 349 ~~~~~~i~k~~G-~----------p~~~~eI~e~i~~~~ 376 (377) T PRK08659 349 RAKVKGINKIGG-E----------LITPEEILEKIKEVA 376 (377) T ss_pred CCCEEEEEEECC-C----------CCCHHHHHHHHHHHH T ss_conf 986468832589-8----------179999999999863 No 47 >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated Probab=99.55 E-value=1.8e-12 Score=107.07 Aligned_cols=243 Identities=18% Similarity=0.229 Sum_probs=149.4 Q ss_pred EECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHH-HH Q ss_conf 01166662789989999887188644566666789999999998788674211776788879983024457644443-32 Q gi|254780673|r 189 VIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQH-SQ 267 (467) Q Consensus 189 ~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~H-s~ 267 (467) ++. .-+|.+.+++|+|+|++|.|-++.-+--.| .++.|.+. +..+ ..+|+|+-...-.+...|+++ .| T Consensus 50 ~~q-~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl-~lm~E~l~-------~aa~--~e~P~Viv~~~R~gPs~g~t~~eQ 118 (350) T PRK07119 50 FVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGI-SLKQEGIS-------YLAG--AELPCVIVNIMRGGPGLGNIQPSQ 118 (350) T ss_pred EEE-CCCHHHHHHHHHHHHHHCCCEEEEECCCCH-HHHHHHHH-------HHHH--CCCCEEEEEEECCCCCCCCCCHHH T ss_conf 998-587799999999999729964764367428-88775889-------9985--488749999975888866741277 Q ss_pred HH--HHHHH--HH-CCCEEEEEECCHHCCCHHHHHH----HCCCCEEEECCCCCCCC--CCCCCCC-------CCEEC-- Q ss_conf 16--88763--22-0313866522100010555654----13783476402123333--3453346-------63121-- Q gi|254780673|r 268 CY--AAWYS--HV-PGLKVVIPYTASDAKGLLKAAI----RDPNPVIFLENEILYGS--SFEVPMV-------DDLVI-- 327 (467) Q Consensus 268 ~~--~~~~~--~i-Pgl~V~~P~~~~d~~~ll~~ai----~~~~Pvi~le~~~ly~~--~~~~p~~-------~~~~~-- 327 (467) +. .+.+. |= =.+-|++|+|++|++.+...|+ ++..||+++-+..+=.. ..+.|+. .++.. T Consensus 119 ~D~~~a~~~~ghGd~~~ivl~p~s~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~e~v~~~~~~~~~~~~~~~~~~g 198 (350) T PRK07119 119 ADYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPERASTELPAKDWAVTG 198 (350) T ss_pred HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHCEECCCCCCCCCCCCCCCCCCCCCC T ss_conf 78999997277886534998179999999999999999999889989973552121101205786345667887765278 Q ss_pred ---------------C---------C-CCEEE----------E-ECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf ---------------4---------4-31144----------4-316874586025788888888753100467527973 Q gi|254780673|r 328 ---------------P---------I-GRARI----------H-RQGSDVTIISFGIGMTYATKAAIELEKNGIDAELID 371 (467) Q Consensus 328 ---------------p---------~-Gk~~i----------~-~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid 371 (467) | + .|.+. + .+..|+.||+||++...+.+|.+.|.++|+.+.++. T Consensus 199 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~k~~~i~~~~~~~e~y~~~da~~~ii~~Gs~~~~~~eav~~lr~~G~kvg~l~ 278 (350) T PRK07119 199 TKGREPNIITSLFLDPEELEKHNWRLQAKYAEIEENEVRYEEYNTDDAELVLVAYGTSSRIAKSAVDMAREEGIKVGLFR 278 (350) T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEECEEE T ss_conf 88888875587777989999999999999999885224165517888999999956346899999999997598126687 Q ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHH Q ss_conf 30068579999999998719899995788767678999999999677642898299717778888896676560899899 Q gi|254780673|r 372 LRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDE 451 (467) Q Consensus 372 ~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~ 451 (467) ++++.||+.+.|.+.+++.++++++|+. .|=+..+|- +... -..++..++..| -..++.++ T Consensus 279 ~~~~~PfP~~~i~~~l~~~~~viVvE~n--~Gql~~~v~--~~~~----~~~~v~~~~k~~-----------G~~~~~~e 339 (350) T PRK07119 279 PITLWPFPEKALEKLADKVKGFLSVEMS--NGQMVEDVR--LAVN----GKKPVEFYGRMG-----------GMVPTPDE 339 (350) T ss_pred ECEECCCCHHHHHHHHHCCCEEEEECCC--CCHHHHHHH--HHHC----CCCCEEEECCCC-----------CCCCCHHH T ss_conf 6510689999999999469989998588--868999999--9828----999746853669-----------98889999 Q ss_pred HHHHHHHHHC Q ss_conf 9999999850 Q gi|254780673|r 452 IIESVESICY 461 (467) Q Consensus 452 I~~av~~v~~ 461 (467) |++++|++.. T Consensus 340 i~~~i~~~~~ 349 (350) T PRK07119 340 ILEKIKEIAG 349 (350) T ss_pred HHHHHHHHHC T ss_conf 9999999857 No 48 >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed Probab=99.51 E-value=2.3e-12 Score=106.29 Aligned_cols=237 Identities=19% Similarity=0.197 Sum_probs=147.1 Q ss_pred CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCCCCH Q ss_conf 1011666627899899998871886445666667899999999987886742117767888799----830244576444 Q gi|254780673|r 188 RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF----RGPNGAAARVAA 263 (467) Q Consensus 188 R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~----r~p~G~~~~~g~ 263 (467) .++.+ =+|.+.+++++|+|.+|.|-+..-+--.| .+..+++- .+ .+ ..+|+|+ |+ |...|.-. T Consensus 49 ~~~q~-E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl-~lm~E~l~-~a------~~--~e~P~Vi~~~~R~--gPstGlpt 115 (375) T PRK09627 49 TFIQM-EDEISGISVALGASMSGVKSMTASSGPGI-SLKAEQIG-LG------FM--AEIPLVIVNVMRG--GPSTGLPT 115 (375) T ss_pred EEEEE-CCHHHHHHHHHHHHHHCCCEEEECCCCCH-HHHHHHHH-HH------HH--CCCCEEEEEEECC--CCCCCCCC T ss_conf 89993-76899999999999749825762277548-88888988-99------86--3798699998758--88768866 Q ss_pred HHHHHH--HHHHH---HHCCCEEEEEECCHHCCCHHHHHH----HCCCCEEEECCCCCC-CC-CCCCCC----------- Q ss_conf 433216--88763---220313866522100010555654----137834764021233-33-345334----------- Q gi|254780673|r 264 QHSQCY--AAWYS---HVPGLKVVIPYTASDAKGLLKAAI----RDPNPVIFLENEILY-GS-SFEVPM----------- 321 (467) Q Consensus 264 ~Hs~~~--~~~~~---~iPgl~V~~P~~~~d~~~ll~~ai----~~~~Pvi~le~~~ly-~~-~~~~p~----------- 321 (467) .+.|+. ...+. .. ++.|++|+|++|++.+...|+ +...||+++-+..+= .. ...+|+ T Consensus 116 ~~~q~Dl~~~~~~~hGd~-~~ivl~p~s~qEa~d~t~~Af~lAE~~~~PVivl~D~~lsh~~~~v~~p~~~~v~~~~~~~ 194 (375) T PRK09627 116 RVAQGDVNQAKNPTHGDF-KSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVEKMIINR 194 (375) T ss_pred CCCCCCHHHHHCCCCCCC-CCEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCEECCCHHHCCCCCCCC T ss_conf 324340888633778763-4067746789999999999999999868988997133100221332269957633455664 Q ss_pred ------CCCEE-----------C-CC----------------------------------CCEE----------EE-ECC Q ss_conf ------66312-----------1-44----------------------------------3114----------44-316 Q gi|254780673|r 322 ------VDDLV-----------I-PI----------------------------------GRAR----------IH-RQG 338 (467) Q Consensus 322 ------~~~~~-----------~-p~----------------------------------Gk~~----------i~-~~G 338 (467) ..+|. + |. .|-+ .. .+. T Consensus 195 ~~~~~~~~~~~py~~~~~~p~~~~p~~~~~~~~~~g~eh~~~g~~~e~~~~~~~~~~r~~~k~~~~~~~~~~~e~y~~ed 274 (375) T PRK09627 195 KEFEGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDGKIVGKLIDRLFNKIESHQDEIEEYEEYMLDD 274 (375) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCC T ss_conf 33578855663667899998645898876179943533255578666999999999999999998765336420026899 Q ss_pred CCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 87458602578888888875310046752797330068579999999998719899995788767678999999999677 Q gi|254780673|r 339 SDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVF 418 (467) Q Consensus 339 ~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f 418 (467) .|+.||+||++...+.+|.+.|+++|+.+.++-+|++.||+.+.|.+.+++.++++++|.. .|.+...|...+ + T Consensus 275 Ae~~iV~~GSt~~~~~eAv~~Lr~~G~kvg~l~~~~l~PfP~~~i~e~l~~~k~v~VvE~N--~Gq~~~~i~~~~---~- 348 (375) T PRK09627 275 AEILIIAYGSVSLSAKEAINRLREEGIKVGLFRPITLWPSPAKRLKEIGDKFEKILVIELN--MGQYLEEIERVM---Q- 348 (375) T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEEECC--CHHHHHHHHHHH---C- T ss_conf 8789999564378999999999974990537975245799989999999579989998078--159999999973---8- Q ss_pred HHCCCCCEEECCCCCCCCCCHHHHHHCCC-CHHHHHHHHHHH Q ss_conf 64289829971777888889667656089-989999999998 Q gi|254780673|r 419 DYLDAPILTITGRDVPMPYAANLEKLALP-NVDEIIESVESI 459 (467) Q Consensus 419 ~~L~~p~~ri~~~d~p~P~~~~le~~~~p-~~~~I~~av~~v 459 (467) ..++..+.-.| ..| +.++|++++|++ T Consensus 349 ---~~~~~~i~k~~------------G~pf~~~ei~~~i~ei 375 (375) T PRK09627 349 ---RDDFHFLGKAN------------GRPISPSEIIAKVKEL 375 (375) T ss_pred ---CCCCCEEEEEC------------CCCCCHHHHHHHHHHC T ss_conf ---98751570069------------9857999999999619 No 49 >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Probab=99.47 E-value=6.1e-12 Score=103.34 Aligned_cols=280 Identities=19% Similarity=0.215 Sum_probs=190.3 Q ss_pred HHHHHHHHH------HCCCCCEEEEECCCCCCCCCCCC----------------CCCHHH-HCCCCCEECCCCCHHHHHH Q ss_conf 122355443------11365069993243445886653----------------236475-4081110116666278998 Q gi|254780673|r 145 ALRDAIAEE------MRRDKDVFIMGEEVAEYQGAYKV----------------TQGLLQ-EFGCERVIDTPITEHGFAG 201 (467) Q Consensus 145 a~~~a~~e~------m~~d~~~~~~gedv~~~~g~f~~----------------t~gl~~-~fg~~R~~d~pi~E~~~~G 201 (467) .+.++++|. |..--.|=+-|||+.. |.|-- -..|.+ .=|.-.++|+++||-+.+| T Consensus 891 ~iDWg~AE~LAfgSLL~eG~~VRLsGQD~~R--GTFshRHavl~Dq~t~~~y~PL~~l~~~~q~~f~v~nS~LSE~avLG 968 (1234) T PRK12270 891 KIDWAFGELLAFGSLLLEGKPVRLSGQDSRR--GTFSQRHAVLIDRETGEEFTPLQNLADDSQGKFLVYDSLLSEYAAMG 968 (1234) T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCC--CCCCCCCEEEEECCCCCEEEEHHHCCCCCCCEEEEECCCCHHHHHHH T ss_conf 9778999999999997089705752540465--43231213564136784785776648365851899815213555555 Q ss_pred HHHHHHHCCCCCH--HHHHHHHHHH--H-HHHHHHHHH-HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH-HHHHHHHH Q ss_conf 9999887188644--5666667899--9-999999878-86742117767888799830244576444433-21688763 Q gi|254780673|r 202 IGIGASFAGLKPI--VEFMTFNFAM--Q-AIDQIINSA-AKTRYMSGGQITTSIVFRGPNGAAARVAAQHS-QCYAAWYS 274 (467) Q Consensus 202 ~a~G~A~~G~~Pi--v~~~~~~f~~--~-a~dqi~n~~-ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~~~~~~ 274 (467) +--|+++.--.-. =|-||.||.- | -+||.|... +||..+| .+|.-.|.| +-|+||.|| -.+|-++- T Consensus 969 FEYGYS~~~P~~LviWEAQFGDFaNGAQvIIDQFIsSgE~KW~~~S------gLVlLLPHG-yEGQGPEHSSARiERfLQ 1041 (1234) T PRK12270 969 FEYGYSVGNPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRS------GVVLLLPHG-YEGQGPDHSSARIERFLQ 1041 (1234) T ss_pred HHHCCCCCCCCCEEEHHHHHHHHHCCCEEEEEEEEECHHHHHHHHC------CEEEECCCC-CCCCCCCCCHHHHHHHHH T ss_conf 5524433689733540655534405864898657861777664135------757886788-888996521466899998 Q ss_pred --HHCCCEEEEEECCHHCCCHHHH-HHH-CCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEE-EEE-----CCCCC--E Q ss_conf --2203138665221000105556-541-3783476402123333345334663121443114-443-----16874--5 Q gi|254780673|r 275 --HVPGLKVVIPYTASDAKGLLKA-AIR-DPNPVIFLENEILYGSSFEVPMVDDLVIPIGRAR-IHR-----QGSDV--T 342 (467) Q Consensus 275 --~iPgl~V~~P~~~~d~~~ll~~-ai~-~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~-i~~-----~G~di--t 342 (467) .=.||.|+.|++|..+..||+. ++| ...|.|++-+|.|.+....+-..+||.- |+-+ ++- +-+++ . T Consensus 1042 LcAe~NmqV~~pTTPAqyFHlLRRQ~~r~~RKPLIv~tPKSLLRh~~a~S~l~e~~~--G~F~~Vi~D~~~~~~~~VkRv 1119 (1234) T PRK12270 1042 LCAEGNMTVAQPSTPANYFHLLRRQALSGIRRPLVVFTPKSMLRNKAAVSDVEDFTE--GKFRSVIDDPTVGDPAKVKRV 1119 (1234) T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCCCCCCHHHCCC--CCCEECCCCCCCCCHHHCCEE T ss_conf 610478599934983899999999874157888698584787458334799788189--954461689877884108389 Q ss_pred EEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC---EEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 86025788888888753100467527973300685799999999987198---999957887676789999999996776 Q gi|254780673|r 343 IISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR---LVTVEEGYPQSSVGSTIANQVQRKVFD 419 (467) Q Consensus 343 ii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~---~i~vee~~~~gg~g~~i~~~i~e~~f~ 419 (467) |+|.|-..+.-++..+....+ ++-+|-+--|.||+.+.|.+.++|+.. ++-+.|...+-|-=+.+..++.+.... T Consensus 1120 ilCSGKvYYDL~~~R~~~~~~--dvAIvRiEQLyPfP~~~l~~~l~~Ypna~e~vW~QEEP~N~GAW~fv~~rl~~~l~~ 1197 (1234) T PRK12270 1120 LLCSGKLYYDLAARREKDGRD--DVAIVRVEQLYPLPERRLRETLARYPNAEEVFWVQEEPANQGAWPFMGLNLPELLPK 1197 (1234) T ss_pred EEECCHHHHHHHHHHHHCCCC--CEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC T ss_conf 980672199999999976999--769998400289988999999974899886899534866357788899999998534 Q ss_pred HCCCCCEEECCCCCCCCCCH Q ss_conf 42898299717778888896 Q gi|254780673|r 420 YLDAPILTITGRDVPMPYAA 439 (467) Q Consensus 420 ~L~~p~~ri~~~d~p~P~~~ 439 (467) ..+++.++.+....|... T Consensus 1198 --~~~l~yvgR~~sASpAtG 1215 (1234) T PRK12270 1198 --LRGLRRVSRRASSSPATG 1215 (1234) T ss_pred --CCCEEEECCCCCCCCCCC T ss_conf --885268577887888877 No 50 >KOG0558 consensus Probab=99.45 E-value=1e-13 Score=115.71 Aligned_cols=78 Identities=26% Similarity=0.413 Sum_probs=72.9 Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCC Q ss_conf 3566788888811578987741789762589859999537533343177786898998237885132697589994377 Q gi|254780673|r 3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEG 81 (467) Q Consensus 3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~eg 81 (467) +.+++-+.||+|.|.++.+|.||+||+|++-|.||||.+|||++++.|.++|+|++|.-+.+ +...||.++.-++.++ T Consensus 65 v~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~d-dia~VGk~Lvd~eve~ 142 (474) T KOG0558 65 VQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPD-DIAKVGKPLVDLEVED 142 (474) T ss_pred EEEEHHHCCCCCEEEEEEEEHHHCCCCHHHHCCHHHCCCCCCEEEEEEEECCEEEEEEECCH-HHHHHCCCEEEEEECC T ss_conf 98771230464005540110030697388742223020465248998640656778740733-4667386115566115 No 51 >PRK09404 kgd alpha-ketoglutarate decarboxylase; Reviewed Probab=99.43 E-value=3.3e-11 Score=98.19 Aligned_cols=282 Identities=19% Similarity=0.234 Sum_probs=190.4 Q ss_pred HHHHHHHHHH------HCCCCCEEEEECCCCCCCCCCCCC----------------CCHHHHCCCCCEECCCCCHHHHHH Q ss_conf 0122355443------113650699932434458866532----------------364754081110116666278998 Q gi|254780673|r 144 EALRDAIAEE------MRRDKDVFIMGEEVAEYQGAYKVT----------------QGLLQEFGCERVIDTPITEHGFAG 201 (467) Q Consensus 144 ea~~~a~~e~------m~~d~~~~~~gedv~~~~g~f~~t----------------~gl~~~fg~~R~~d~pi~E~~~~G 201 (467) +.+.+|++|. |...-.|=+-||||.. |.|--- ..|.+.=|+-.|+|.|+||.+.+| T Consensus 587 ~~iDWa~AE~LAf~SLl~eG~~VRlsGQD~~R--GTFshRHavl~dq~t~~~y~pL~~~~~~q~~~~v~nS~LSE~avlg 664 (931) T PRK09404 587 KPIDWGMAEALAFASLLDEGYPVRLSGQDSGR--GTFSHRHAVLHDQKTGETYIPLNHLSDGQASFEVIDSPLSEEAVLG 664 (931) T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC--CCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECHHHHHHHHH T ss_conf 87555788999999998669626644641566--5434531588863799588576555466864999934125777765 Q ss_pred HHHHHHHCCCCCH--HHHHHHHHH--HH-HHHHHHHHH-HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH-HHHHHHH- Q ss_conf 9999887188644--566666789--99-999999878-86742117767888799830244576444433-2168876- Q gi|254780673|r 202 IGIGASFAGLKPI--VEFMTFNFA--MQ-AIDQIINSA-AKTRYMSGGQITTSIVFRGPNGAAARVAAQHS-QCYAAWY- 273 (467) Q Consensus 202 ~a~G~A~~G~~Pi--v~~~~~~f~--~~-a~dqi~n~~-ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~~~~~- 273 (467) +--|+++.--+-. =|-||+||. .| -+||.|..+ .||..+|| +|.-.|.| .-|+||.|| -.+|-++ T Consensus 665 FEyGYs~~~p~~LviWEAQFGDF~NgAQiiiDqfi~s~e~KW~~~sg------lvllLPHG-yeGqGPEHSSaR~ERfLQ 737 (931) T PRK09404 665 FEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSG------LVMLLPHG-YEGQGPEHSSARLERFLQ 737 (931) T ss_pred HHHHHCCCCCCCEEEEHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCC------EEEECCCC-CCCCCCCCCCCCHHHHHH T ss_conf 45300025887505424331455467348975001036777610167------48987787-678896444410789997 Q ss_pred -HHHCCCEEEEEECCHHCCCHHHHHH-H-CCCCEEEECCCCCCCCCCCCCCCCCEECCCCCE-EEEEC-----CCCC--E Q ss_conf -3220313866522100010555654-1-378347640212333334533466312144311-44431-----6874--5 Q gi|254780673|r 274 -SHVPGLKVVIPYTASDAKGLLKAAI-R-DPNPVIFLENEILYGSSFEVPMVDDLVIPIGRA-RIHRQ-----GSDV--T 342 (467) Q Consensus 274 -~~iPgl~V~~P~~~~d~~~ll~~ai-~-~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~-~i~~~-----G~di--t 342 (467) ..=.||.|+.|++|+.+..+|+.=+ | ...|.|++-+|.|.+....+-..+|+.- |.- +++-+ -+++ . T Consensus 738 l~ae~N~~V~~~ttpA~~FH~LRrQ~~r~~rkPLiv~tpKsLLR~~~~~S~~~e~~~--g~F~~vi~d~~~~~~~~v~rv 815 (931) T PRK09404 738 LCAEDNMQVCNPTTPAQYFHLLRRQVLRPFRKPLVVMTPKSLLRHKLAVSSLEELAE--GSFQPVIGDIDELDPKKVKRV 815 (931) T ss_pred HCHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHCCCCCCCCHHHCCC--CCCEEECCCCCCCCHHCCCEE T ss_conf 530238189905987999999999850346787598473676348545799899079--945163279876884008689 Q ss_pred EEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC---EEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 86025788888888753100467527973300685799999999987198---999957887676789999999996776 Q gi|254780673|r 343 IISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR---LVTVEEGYPQSSVGSTIANQVQRKVFD 419 (467) Q Consensus 343 ii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~---~i~vee~~~~gg~g~~i~~~i~e~~f~ 419 (467) |+|.|-..+.-+++.+....+ ++-+|-+--|.||+.+.|.+.++|... ++-+.|..++-|-=+.|..++.+-. . T Consensus 816 i~CsGKvyydL~~~r~~~~~~--~vaivRiEqL~PfP~~~l~~~l~~y~~~~~~vW~QEEp~N~GaW~~v~~rl~~~~-~ 892 (931) T PRK09404 816 VLCSGKVYYDLLEARRKRGID--DVAIVRIEQLYPFPHKELAAELAKYPNVKEVVWCQEEPKNQGAWYFIQHHLEEVL-P 892 (931) T ss_pred EECCCHHHHHHHHHHHHCCCC--CEEEEEEHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH-H T ss_conf 982768999999999976999--7799982112799789999999868998717996557563578889999999986-2 Q ss_pred HCCCCCEEECCCCCCCCCCH Q ss_conf 42898299717778888896 Q gi|254780673|r 420 YLDAPILTITGRDVPMPYAA 439 (467) Q Consensus 420 ~L~~p~~ri~~~d~p~P~~~ 439 (467) .-...+.-+|.+....|... T Consensus 893 ~~~~~~~y~gR~~~aspA~G 912 (931) T PRK09404 893 EGAQKLRYAGRPASASPAVG 912 (931) T ss_pred HCCCCEEEECCCCCCCCCCC T ss_conf 23872279567988888878 No 52 >cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Probab=99.30 E-value=9.7e-12 Score=101.93 Aligned_cols=61 Identities=26% Similarity=0.380 Sum_probs=58.1 Q ss_pred EEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE Q ss_conf 57898774178976258985999953753334317778689899823788513269758999 Q gi|254780673|r 16 EGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI 77 (467) Q Consensus 16 eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i 77 (467) .|+|.+|++++||.|++||+||+||++|..++++||.+|+|.++++++| +.|..|++|+.| T Consensus 7 ~G~v~~~~V~~Gd~V~~G~~l~~iE~mK~~~~i~a~~~G~v~~i~~~~G-~~V~~G~~L~~i 67 (67) T cd06850 7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEG-DQVEAGQLLVVI 67 (67) T ss_pred CEEEEEEEECCCCEECCCCEEEEEEECCCEEEEEECCCEEEEEEEECCC-CEECCCCEEEEC T ss_conf 8899999957999997899999999366119999689999999997898-998999999979 No 53 >PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed Probab=99.28 E-value=1.1e-09 Score=87.53 Aligned_cols=213 Identities=15% Similarity=0.174 Sum_probs=132.8 Q ss_pred CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCCCCH Q ss_conf 1011666627899899998871886445666667899999999987886742117767888799----830244576444 Q gi|254780673|r 188 RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF----RGPNGAAARVAA 263 (467) Q Consensus 188 R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~----r~p~G~~~~~g~ 263 (467) .|+.+ =+|.+.+++++|++.+|.|-.-.-+--.| ++..++|. |.+|. .+|+|+ |+..+ .+..-. T Consensus 52 ~~iq~-EsE~aAi~a~~GAs~aGara~TaTSg~Gl-~LM~E~l~-------~aag~--elPiVi~v~~R~~~~-p~~i~~ 119 (395) T PRK08367 52 EFIKV-ESEHSAISACVGASAAGVRTFTATASQGL-ALMHEILF-------IAAGM--RLPIVMAIGNRALSA-PINIWN 119 (395) T ss_pred EEEEE-CCHHHHHHHHHHHHHHCCCEEEECCCCCH-HHHHHHHH-------HHHHH--HCCEEEEECCCCCCC-CCCCCC T ss_conf 79985-87899999999888529786851478738-88743899-------99871--177899970457888-877651 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH----CCC--CEEEECCCCCCC---CCCCCCCC------------ Q ss_conf 433216887632203138665221000105556541----378--347640212333---33453346------------ Q gi|254780673|r 264 QHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR----DPN--PVIFLENEILYG---SSFEVPMV------------ 322 (467) Q Consensus 264 ~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~--Pvi~le~~~ly~---~~~~~p~~------------ 322 (467) .|+. .+...--|+-+++|+|.+|+..+...|++ ... ||+++-+..+-. +..++|+. T Consensus 120 d~~D---~~~~rd~G~i~l~~~n~QEa~D~~i~Af~iAE~~rv~lPv~v~~Dgf~lsH~~e~v~ip~~e~v~~~l~~~~p 196 (395) T PRK08367 120 DWQD---TISQRDTGWLQFYAENNQEALDLILIAYKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEP 196 (395) T ss_pred HHHH---HHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHCCEEEEECCCHHHHHHHCCCCCC T ss_conf 1566---8756787529982687677799999999999875367877997163564531500307988999865032343 Q ss_pred ------------------CC-E---EC----------------------CCCC----EEE-EECCCCCEEEEHHHHHHHH Q ss_conf ------------------63-1---21----------------------4431----144-4316874586025788888 Q gi|254780673|r 323 ------------------DD-L---VI----------------------PIGR----ARI-HRQGSDVTIISFGIGMTYA 353 (467) Q Consensus 323 ------------------~~-~---~~----------------------p~Gk----~~i-~~~G~ditii~~G~~~~~a 353 (467) ++ | .. -+|+ .+- --+.-|+.||+||++...+ T Consensus 197 ~~~~ldp~~P~~~g~~~~~~~~~e~~~~~~~~~~~~~~vi~~~~~e~~~~~gr~y~~ie~y~~eDAe~viV~~GS~~~~~ 276 (395) T PRK08367 197 KHAYLDPARPITQGTLAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTL 276 (395) T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCHHHH T ss_conf 10247976774557878997055445424488987699999999999998652114057617999889999817428999 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 888753100467527973300685799999999987198999957887676789999999996 Q gi|254780673|r 354 TKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRK 416 (467) Q Consensus 354 ~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~ 416 (467) .+|.+.|.++|+.+.++.+|+++||+.+.|.+..++.++++|+|-+...|. +.-+..-+..- T Consensus 277 k~AVd~lR~~G~KVGllr~r~~rPFP~e~l~~~~k~~k~V~Vldr~~s~g~-~g~l~~ev~~~ 338 (395) T PRK08367 277 KEWVDKKREEGYKVGAAKITVYRPFPVEEIRELAKKAKVLAFLEKNITFGL-YGAVFQDASAA 338 (395) T ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCC-CCCHHHHHHHH T ss_conf 999999997498576899888589999999998657988999868899888-98159999999 No 54 >PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed Probab=99.28 E-value=1.3e-09 Score=86.89 Aligned_cols=250 Identities=22% Similarity=0.346 Sum_probs=150.5 Q ss_pred CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCCCCH Q ss_conf 1011666627899899998871886445666667899999999987886742117767888799----830244576444 Q gi|254780673|r 188 RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF----RGPNGAAARVAA 263 (467) Q Consensus 188 R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~----r~p~G~~~~~g~ 263 (467) .++.+ =+|.+.+++++|++.+|.|-.-.-+--.| ++-.++|. |.+|. .+|+|+ |++.+ .+..-. T Consensus 58 ~~iq~-EsE~aA~~a~~GAs~aGara~TaTSspGl-~LM~E~l~-------~aag~--~lP~Vi~vv~R~~~~-~l~i~~ 125 (407) T PRK09622 58 EFVMV-ESEHAAMSACVGAAAAGGRVATATSSQGL-ALMVEVLY-------QASGM--RLPIVLNLVNRALAA-PLNVNG 125 (407) T ss_pred EEEEE-CCHHHHHHHHHHHHHHCCCEEEECCCCCH-HHHHHHHH-------HHHHH--HCCEEEEEECCCCCC-CCCCCC T ss_conf 69985-57899999999998538786730478738-77520899-------99985--278488874156788-888877 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHH------HCCCCEEEECCCCC----------------------CCC Q ss_conf 43321688763220313866522100010555654------13783476402123----------------------333 Q gi|254780673|r 264 QHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAI------RDPNPVIFLENEIL----------------------YGS 315 (467) Q Consensus 264 ~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai------~~~~Pvi~le~~~l----------------------y~~ 315 (467) .||+ .+...--|+-+++|++++|+..+...|+ +...||+++-+..+ |.. T Consensus 126 dhsD---~m~~rdtG~i~l~~~svQE~~D~~i~Af~iAE~~~~r~Pv~v~~DGf~~sH~~~~v~~~~~e~~~~~~~~~~p 202 (407) T PRK09622 126 DHSD---MYLSRDSGWISLCTCNPQEAYDFTLMAFRIAEDQKVRVPTIVNQDGFLCSHTAQNVRPLSDAVAYQFVGEYQP 202 (407) T ss_pred CHHH---HHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCCCHHHHHHHCCCCCC T ss_conf 8899---9970588739983799899999999999998875778888997302354156563335827777753355677 Q ss_pred -----CCCCCC------CCCEECC--------------------------CCC----EEEEE-CCCCCEEEEHHHHHHHH Q ss_conf -----345334------6631214--------------------------431----14443-16874586025788888 Q gi|254780673|r 316 -----SFEVPM------VDDLVIP--------------------------IGR----ARIHR-QGSDVTIISFGIGMTYA 353 (467) Q Consensus 316 -----~~~~p~------~~~~~~p--------------------------~Gk----~~i~~-~G~ditii~~G~~~~~a 353 (467) ..+-|. .+|+.+. +|+ .+.++ +.-|+.||+||+....+ T Consensus 203 ~~~~ld~~~P~~~G~~~~~d~~~~~~~~~~~~~~~~~~~i~~~~~e~~~~~gr~y~~~e~y~~eDAe~viV~~GS~~~~~ 282 (407) T PRK09622 203 KNSLLDFDKPVTYGAQTEEDWHFEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLVETYQMEDAEVAIFALGTTVESA 282 (407) T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCHHHH T ss_conf 66667875674447878997433322644176887899999999999998587556078717998779999807868999 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCCCEEE---- Q ss_conf 8887531004675279733006857999999999871989999578876767899999999967764-28982997---- Q gi|254780673|r 354 TKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDY-LDAPILTI---- 428 (467) Q Consensus 354 ~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~-L~~p~~ri---- 428 (467) .+|.+.|.++|+.+.+|.+|+++||..+.|.+.+++.++++|+|-....|..| ++...+..-.++. ....|..+ T Consensus 283 ~~AVd~lR~~G~KVGlir~r~~rPFP~~~l~~al~~~K~V~Vldr~~~~g~~g-~l~~~v~~al~~~~~~~~p~v~~~~~ 361 (407) T PRK09622 283 IVAAKEMRKKGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMG-ALFNEVTSAVYQTQGTKHPVVSNYIY 361 (407) T ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCCC-HHHHHHHHHHHHCCCCCCCEEECEEC T ss_conf 99999999749867589999858999999999875799899997889988877-37999999998527778987956565 Q ss_pred --CCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCC Q ss_conf --177788888966765608998999999999850200 Q gi|254780673|r 429 --TGRDVPMPYAANLEKLALPNVDEIIESVESICYKRK 464 (467) Q Consensus 429 --~~~d~p~P~~~~le~~~~p~~~~I~~av~~v~~~~~ 464 (467) +++|.. --+...|++..++.-.+.+ T Consensus 362 GLgg~d~t-----------~~~~~~v~~~l~~~~~~g~ 388 (407) T PRK09622 362 GLGGRDMT-----------IAHLCEIFEEINENALAGT 388 (407) T ss_pred CCCCCCCC-----------HHHHHHHHHHHHHHHHCCC T ss_conf 78878899-----------9999999999999985599 No 55 >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed Probab=99.25 E-value=5.6e-10 Score=89.58 Aligned_cols=242 Identities=17% Similarity=0.265 Sum_probs=145.4 Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCCCCHHHHHHH Q ss_conf 6627899899998871886445666667899999999987886742117767888799----830244576444433216 Q gi|254780673|r 194 ITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF----RGPNGAAARVAAQHSQCY 269 (467) Q Consensus 194 i~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~----r~p~G~~~~~g~~Hs~~~ 269 (467) =+|.+.+++++|++++|.|-...-+--.| ++-.++|. |..+ ..+|+|+ |++.. .+..-..|+ T Consensus 60 EsE~aAi~a~iGAs~aGara~TaTSgpGl-~LM~E~l~-------~aag--~elP~Vi~~v~R~~~~-~~~i~~dh~--- 125 (394) T PRK08366 60 ESEHSAMAACIGASATGARAFTATSAQGL-ALMHEMLH-------WAAG--ARLPIVMVDVNRAMAP-PWSVWDDQT--- 125 (394) T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCCH-HHHHHHHH-------HHHH--CCCCEEEEEEECCCCC-CCCCCCCHH--- T ss_conf 77899999999998518776874077348-87745889-------9987--4498799996537899-888761045--- Q ss_pred HHHHHHHCCCEEEEEECCHHCCCHHH----HHHHCCCCEEEECCCCCCCCC---------------------------CC Q ss_conf 88763220313866522100010555----654137834764021233333---------------------------45 Q gi|254780673|r 270 AAWYSHVPGLKVVIPYTASDAKGLLK----AAIRDPNPVIFLENEILYGSS---------------------------FE 318 (467) Q Consensus 270 ~~~~~~iPgl~V~~P~~~~d~~~ll~----~ai~~~~Pvi~le~~~ly~~~---------------------------~~ 318 (467) +.+...--|+-+++|++.+|+..+.. .|.+...||+.+.+..+-... .+ T Consensus 126 D~m~~rd~g~~~l~~~~~QE~~d~~i~Af~iAe~~~~Pviv~~Dgf~~sh~~~~v~~~~~e~v~~~lp~~~~~~~~~~~~ 205 (394) T PRK08366 126 DSLSQRDTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYTLADFE 205 (394) T ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCEECCCCCCHHHHHHHCCCCCCCCCCCCCC T ss_conf 46435777717883698788999999999999998799899605335318531454797778775438766433346766 Q ss_pred CCC-------CCCE---ECC----------------------CCCE--EEE----ECCCCCEEEEHHHHHHHHHHHHHHH Q ss_conf 334-------6631---214----------------------4311--444----3168745860257888888887531 Q gi|254780673|r 319 VPM-------VDDL---VIP----------------------IGRA--RIH----RQGSDVTIISFGIGMTYATKAAIEL 360 (467) Q Consensus 319 ~p~-------~~~~---~~p----------------------~Gk~--~i~----~~G~ditii~~G~~~~~a~~aa~~L 360 (467) -|. .++| ... +|+- ..+ .+.-|+.||+||++...+.+|.+.| T Consensus 206 ~P~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~e~~~~~gr~y~~~~e~y~~edAd~viV~~GS~~~~~~eaVd~l 285 (394) T PRK08366 206 NPIAVGALATPADYYEFRYKIAKAHEEAKKVIKEVGKEFGERFGRDYSQMIETYYIDDADFVFMGMGSLMGTVKEAVDLL 285 (394) T ss_pred CCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHEEECCCCCCCEEEEEECCCHHHHHHHHHHH T ss_conf 87420787798652210100168899889999999999999964010110043378887799999375189999999999 Q ss_pred HCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCE------EECCCCCC Q ss_conf 004675279733006857999999999871989999578876767899999999967764289829------97177788 Q gi|254780673|r 361 EKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPIL------TITGRDVP 434 (467) Q Consensus 361 ~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~------ri~~~d~p 434 (467) .++|+.+.++.+|++.||+.+.|.+..++.++++|+|-....|..| -+...+..-.++ .+..|. =|+++|.. T Consensus 286 r~~G~kVG~l~vr~~rPFP~~~l~~~l~~~k~V~Vlern~~~g~~g-~l~~~v~~al~~-~~~~~~~~~~~~Glgg~d~~ 363 (394) T PRK08366 286 RKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEG-ILFTEAKGALYN-TDARPIMKNYIVGLGGRDFT 363 (394) T ss_pred HHCCCEEEEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCCC-CHHHHHHHHHHC-CCCCCEEECEEECCCCCCCC T ss_conf 9759866589998848999999999875799899965788988788-159999999856-89997582757427788899 Q ss_pred CCCCHHHHHHCCCCHHHHHHHHHHHHCC Q ss_conf 8889667656089989999999998502 Q gi|254780673|r 435 MPYAANLEKLALPNVDEIIESVESICYK 462 (467) Q Consensus 435 ~P~~~~le~~~~p~~~~I~~av~~v~~~ 462 (467) + -+...+++..++...+ T Consensus 364 ----~-------~~~~~~~~~l~~~~~~ 380 (394) T PRK08366 364 ----V-------SDVKAIAEDMKKVIES 380 (394) T ss_pred ----H-------HHHHHHHHHHHHHHHC T ss_conf ----9-------9999999999967664 No 56 >PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Probab=99.09 E-value=4.9e-10 Score=89.96 Aligned_cols=62 Identities=29% Similarity=0.441 Sum_probs=58.7 Q ss_pred EEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE Q ss_conf 578987741789762589859999537533343177786898998237885132697589994 Q gi|254780673|r 16 EGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAIL 78 (467) Q Consensus 16 eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~ 78 (467) -|+|.+|++++||.|++||+|+.||..|--.++.||.+|+|++|++++| |.|..|++|..|. T Consensus 87 pG~v~~v~v~~Gd~V~~g~~l~vlEaMKMe~~i~a~~~G~v~~i~v~~g-~~V~~g~~l~~ig 148 (148) T PRK05641 87 PGKILKILVKEGDQVKTGQGLLILEAMKMENEIPAPKDGVVKKILVKEG-DTVDTGQPLIELG 148 (148) T ss_pred CEEEEEEEECCCCEECCCCEEEEEEHHCCCEEEEECCCEEEEEEEECCC-CEECCCCEEEEEC T ss_conf 9089999968999987999999999431513999299989989993897-9989999899959 No 57 >COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] Probab=99.03 E-value=1.3e-09 Score=86.97 Aligned_cols=62 Identities=31% Similarity=0.432 Sum_probs=59.0 Q ss_pred EEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE Q ss_conf 578987741789762589859999537533343177786898998237885132697589994 Q gi|254780673|r 16 EGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAIL 78 (467) Q Consensus 16 eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~ 78 (467) -|++.+-+|++||.|++||.||.||-=|.-+||+||.+|+|.+|++++| +.|..|++|..|. T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G-~~Ve~G~~L~~I~ 139 (140) T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNG-DPVEYGDPLAVIE 139 (140) T ss_pred CEEEEEEEECCCCEECCCCEEEEEEEEECCCEECCCCCCEEEEEEECCC-CCCCCCCEEEEEE T ss_conf 6189998765799975899999998200155322899968999994489-8526899889960 No 58 >PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Probab=99.02 E-value=1.4e-09 Score=86.80 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=58.5 Q ss_pred EEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE Q ss_conf 78987741789762589859999537533343177786898998237885132697589994 Q gi|254780673|r 17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAIL 78 (467) Q Consensus 17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~ 78 (467) |+|.+|++++||.|++||.|+.||..|--.+|.||.+|+|.+|++++| +.|..|++|..|. T Consensus 72 G~v~~i~v~~Gd~V~~g~~l~vlEAMKMe~~i~ap~~G~V~~i~v~~G-~~V~~g~~L~~ig 132 (132) T PRK06549 72 GTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTITAIHVGPG-QVVNPGDGLITIG 132 (132) T ss_pred EEEEEEEECCCCEECCCCEEEEEEEHHCCCEEECCCCEEEEEEEECCC-CEECCCCEEEEEC T ss_conf 799999938999987999899998010244105899979989994798-9989999899949 No 59 >PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Probab=98.95 E-value=4.2e-09 Score=83.38 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=58.9 Q ss_pred EEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE Q ss_conf 578987741789762589859999537533343177786898998237885132697589994 Q gi|254780673|r 16 EGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAIL 78 (467) Q Consensus 16 eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~ 78 (467) .|++.+|++++||.|++||.|+.+|.-|--.+|.||.+|+|++|++++| |.|.-|++|+.|. T Consensus 9 ~G~V~~v~V~~Gd~V~~G~~l~vlEAMKME~~i~A~~~G~V~~i~v~~G-d~V~~G~~L~~ie 70 (70) T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEG-DFVNEGDVLLEIE 70 (70) T ss_pred CEEEEEEEECCCCEECCCCEEEEEEECCCCCEEECCCCEEEEEEEECCC-CEECCCCEEEEEC T ss_conf 9499999928989989999999997112657684799909999995898-9989999999979 No 60 >PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Probab=98.94 E-value=5.2e-09 Score=82.78 Aligned_cols=61 Identities=26% Similarity=0.326 Sum_probs=58.6 Q ss_pred EEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE Q ss_conf 57898774178976258985999953753334317778689899823788513269758999 Q gi|254780673|r 16 EGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI 77 (467) Q Consensus 16 eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i 77 (467) .|++.++++++||.|++||+|+.+|.-|--++|.||.+|+|.+|++++| |.|..|++|++| T Consensus 10 ~G~V~~v~V~~Gd~V~~Gd~l~vlEAMKME~~v~A~~~G~V~~i~v~~G-d~V~~Gd~L~~I 70 (71) T PRK05889 10 VASVLEVVVNEGDQIGEGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVG-DVIQAGDLIAVI 70 (71) T ss_pred CEEEEEEEECCCCEECCCCEEEEEEHHCCCCEEECCCCCEEEEEEECCC-CEECCCCEEEEE T ss_conf 8489999979999988999999998200457784799909979997899-998899999996 No 61 >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. Probab=98.85 E-value=1.1e-06 Score=66.33 Aligned_cols=249 Identities=20% Similarity=0.247 Sum_probs=151.0 Q ss_pred HCCCC--CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC Q ss_conf 40811--1011666627899899998871886445666667899999999987886742117767888799830244576 Q gi|254780673|r 183 EFGCE--RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR 260 (467) Q Consensus 183 ~fg~~--R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~ 260 (467) +++++ =+|.-.+.|...+-+|+|+++.|.|-++ +|-.-=+-+|.|.++|.+. +|- +-.+|+-. | .. T Consensus 40 ~~~~~~~i~~e~~~NEkvA~e~a~gA~~~Gvr~l~-~~K~vGlnva~D~l~~~~~-----~G~--~GG~v~v~--g--DD 107 (595) T TIGR03336 40 KVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLRAFC-TMKHVGLNVAADPLMTLAY-----TGV--KGGLVVVV--A--DD 107 (595) T ss_pred HHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEE-ECCCCCCCHHHHHHHHHHH-----HCC--CCEEEEEE--E--CC T ss_conf 62042666998557889999998776442863899-8566884412778887652-----077--75599999--4--69 Q ss_pred CCHHHHHHHH--HHHHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECC-CCCCC----------CCCCCCCC- Q ss_conf 4444332168--87632203138665221000105556541----3783476402-12333----------33453346- Q gi|254780673|r 261 VAAQHSQCYA--AWYSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLEN-EILYG----------SSFEVPMV- 322 (467) Q Consensus 261 ~g~~Hs~~~~--~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~-~~ly~----------~~~~~p~~- 322 (467) -|+.-||.-+ -+|+..-+|-|+.|+|++|++.+.+.++. +.-||+|--- +.-.. .....|.. T Consensus 108 pg~~SSq~eqdsr~~~~~a~iPvl~Ps~~qE~~d~~~~af~LSr~~g~pV~lr~ttrv~h~~~~V~~~~~~~~~~~~~~~ 187 (595) T TIGR03336 108 PSMHSSQNEQDTRHYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFE 187 (595) T ss_pred CCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCC T ss_conf 99853516777899999849826778999999999999999999979987999887664345557658866677886556 Q ss_pred ---------------------------CCEE--CCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf ---------------------------6312--14431144431687458602578888888875310046752797330 Q gi|254780673|r 323 ---------------------------DDLV--IPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLR 373 (467) Q Consensus 323 ---------------------------~~~~--~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r 373 (467) .+|. .++. ++...+.++-||+.|.....+.+|-+.| |+++.++-+- T Consensus 188 ~~~~~~~~~p~~~~~~~~~l~~rl~~~~~~~~~~~~n--~v~~~~~~iGIItsG~~y~~v~eAl~~l---G~~i~ilKlg 262 (595) T TIGR03336 188 KDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLN--RLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIG 262 (595) T ss_pred CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEECCCCCEEEEECCCCHHHHHHHHHHC---CCCCCEEEEC T ss_conf 7866528996668999999999999999999868996--6723999889992281089999999972---9996268843 Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHH Q ss_conf 06857999999999871989999578876767899999999967764289829971777888889667656089989999 Q gi|254780673|r 374 TIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEII 453 (467) Q Consensus 374 ~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~ 453 (467) ..+||+.+.|.+-++...+++||||... | |-..|.+-+|+ ....++.++-.|-.+|....| +.+.|. T Consensus 263 m~~PLp~~~i~~F~~g~d~VlVVEE~~p---~---iE~qik~~~~~-~~~~~~v~GK~d~~lp~~GEl------~~~~i~ 329 (595) T TIGR03336 263 FTYPVPEGLVEEFLSGVEEVLVVEELEP---V---VEEQVKALAGT-AGLNIKVHGKEDGFLPREGEL------NPDIVV 329 (595) T ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCH---H---HHHHHHHHHHH-CCCCCEEECCCCCCCCCCCCC------CHHHHH T ss_conf 7678988999999845988999935836---5---89999999751-689954778887878865685------999999 Q ss_pred HHHHHHHC Q ss_conf 99999850 Q gi|254780673|r 454 ESVESICY 461 (467) Q Consensus 454 ~av~~v~~ 461 (467) +++.+... T Consensus 330 ~~l~~~~~ 337 (595) T TIGR03336 330 NALAKFGL 337 (595) T ss_pred HHHHHHHC T ss_conf 99997534 No 62 >PRK09282 pyruvate carboxylase subunit B; Validated Probab=98.78 E-value=3.3e-08 Score=77.15 Aligned_cols=27 Identities=4% Similarity=-0.082 Sum_probs=13.5 Q ss_pred EEECCCCCEEEEHHHHHHHHHHHHHHH Q ss_conf 443168745860257888888887531 Q gi|254780673|r 334 IHRQGSDVTIISFGIGMTYATKAAIEL 360 (467) Q Consensus 334 i~~~G~ditii~~G~~~~~a~~aa~~L 360 (467) +.+..-++..|+-++.+...+.....| T Consensus 328 V~~~lG~~~~VTP~SqiVg~qA~~NVl 354 (580) T PRK09282 328 VREDLGYPPLVTPTSQIVGTQAVLNVL 354 (580) T ss_pred HHHHCCCCCEECCHHHHHHHHHHHHHH T ss_conf 999759986128499999999999986 No 63 >PRK07051 hypothetical protein; Validated Probab=98.78 E-value=2.2e-08 Score=78.31 Aligned_cols=58 Identities=26% Similarity=0.284 Sum_probs=54.1 Q ss_pred EEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC Q ss_conf 77417897625898599995375333431777868989982378851326975899943 Q gi|254780673|r 21 KWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ 79 (467) Q Consensus 21 ~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ 79 (467) .=+|++||.|++||.||.||.-|.-.||.|+.+|+|.+|++++|+ .|.-|++|..|.+ T Consensus 23 ~pfV~~Gd~V~~G~~v~iiEaMKm~~~V~A~~~G~V~~ilv~~G~-~V~~Gq~L~~Iee 80 (80) T PRK07051 23 PPYVEVGDTVAAGDVVGLVEVMKQFSEVEAEVAGRVVRFLVDDGE-PVDAGQVLMRIEE 80 (80) T ss_pred CCCCCCCCEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCC-EECCCCEEEEEEC T ss_conf 981367999889999999970027746726998299999956989-8679997899829 No 64 >PRK12999 pyruvate carboxylase; Reviewed Probab=98.77 E-value=3.9e-08 Score=76.63 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=42.9 Q ss_pred HHHHHHHHHHHHHHCCCCCE-EEEECCC-CCCCCHHHHHHHHHHCCCE-EEEECCCCCCCHHHHHHHHHHHHHHHHCCCC Q ss_conf 78888888875310046752-7973300-6857999999999871989-9995788767678999999999677642898 Q gi|254780673|r 348 IGMTYATKAAIELEKNGIDA-ELIDLRT-IRPMDWQTIFESVKKTGRL-VTVEEGYPQSSVGSTIANQVQRKVFDYLDAP 424 (467) Q Consensus 348 ~~~~~a~~aa~~L~~~gi~~-~vid~r~-l~Pld~~~i~~sv~kt~~~-i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p 424 (467) +.+..-++.|+.|.+.|.+. .|=||-- |+|.....+.+.+++.=.| |-+|-| -+.|.+..-.-...|-+-+..|.- T Consensus 689 ~~l~yy~~~a~~l~~~G~~~l~IKDMAGLl~P~aa~~LV~aLk~~~~lPIhlHtH-dTsG~~~at~laA~eAGvDiVD~A 767 (1147) T PRK12999 689 YDLDYYVDLAKELEAAGAHILAIKDMAGLLKPAAAYKLVSALKEEVDLPIHLHTH-DTSGNGLATYLAAAEAGVDIVDVA 767 (1147) T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC-CCCCHHHHHHHHHHHCCCCEEECC T ss_conf 6699999999999976898899714454688799999999998616984598436-788558999999998599989635 Q ss_pred CEEEC Q ss_conf 29971 Q gi|254780673|r 425 ILTIT 429 (467) Q Consensus 425 ~~ri~ 429 (467) +--++ T Consensus 768 ~ssmS 772 (1147) T PRK12999 768 MASMS 772 (1147) T ss_pred CHHHC T ss_conf 41102 No 65 >COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Probab=98.75 E-value=2.2e-07 Score=71.32 Aligned_cols=278 Identities=21% Similarity=0.269 Sum_probs=174.7 Q ss_pred HHHHHHHHHHC------CCCCEEEEECCCCCCCCCCCCC----------------CCHHHHCCCCCEECCCCCHHHHHHH Q ss_conf 12235544311------3650699932434458866532----------------3647540811101166662789989 Q gi|254780673|r 145 ALRDAIAEEMR------RDKDVFIMGEEVAEYQGAYKVT----------------QGLLQEFGCERVIDTPITEHGFAGI 202 (467) Q Consensus 145 a~~~a~~e~m~------~d~~~~~~gedv~~~~g~f~~t----------------~gl~~~fg~~R~~d~pi~E~~~~G~ 202 (467) .+.++|+|.|. ....+-+=|||++. |.|... ..|...=|.-.++|.+++|.++.|+ T Consensus 565 ~iDW~~aE~LAfatll~eG~~iRlsGqDs~R--GTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgF 642 (906) T COG0567 565 GIDWGMAETLAFATLLDEGHPIRLSGQDSGR--GTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGF 642 (906) T ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEECCCCCCCCCCHHHCCCCCCEEEEEECHHHHHHHHHH T ss_conf 3316678886155000368874420031798--67534424542356742217023313566449998145568888756 Q ss_pred HHHHHHCCCCCHH--HHHHHHHHHH---HHHHHHHH-HHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHH-HHHHHHHH Q ss_conf 9998871886445--6666678999---99999987-8867421177678887998302445764444332-16887632 Q gi|254780673|r 203 GIGASFAGLKPIV--EFMTFNFAMQ---AIDQIINS-AAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQ-CYAAWYSH 275 (467) Q Consensus 203 a~G~A~~G~~Piv--~~~~~~f~~~---a~dqi~n~-~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~-~~~~~~~~ 275 (467) =-|.++.-.+-.+ |.||+||+-. -+||-++. -.||.-+|| +|.-.|.| +-|+||.||- -++-++.- T Consensus 643 EYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sg------Lv~lLPHg-yEGQGPEHSSaRlER~LQL 715 (906) T COG0567 643 EYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSG------LVMLLPHG-YEGQGPEHSSARLERFLQL 715 (906) T ss_pred HHHHHHCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCC------CEEECCCC-CCCCCCCCCCCHHHHHHHH T ss_conf 5314323873221001320561368761213656659899988657------22772276-7899976764346889986 Q ss_pred --HCCCEEEEEECCHHCCCHHHH-HHH-CCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEE----ECCCCCE-EEEH Q ss_conf --203138665221000105556-541-378347640212333334533466312144311444----3168745-8602 Q gi|254780673|r 276 --VPGLKVVIPYTASDAKGLLKA-AIR-DPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIH----RQGSDVT-IISF 346 (467) Q Consensus 276 --iPgl~V~~P~~~~d~~~ll~~-ai~-~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~----~~G~dit-ii~~ 346 (467) =-||+|++|+++.....+|+. +.+ ...|.+++-+|.|-+....+-..+++.-. +.-.++ ....+++ |+.+ T Consensus 716 caE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~-~F~~vl~d~~~~~~~v~rvvlc 794 (906) T COG0567 716 CAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEG-TFQPVLEDIDELDPKVKRVVLC 794 (906) T ss_pred HHHHCCEEEECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHCCCCCCCHHHHCCC-HHHCCHHCCCCCCCCEEEEEEE T ss_conf 187588788338289999999998764156751855765565462668845552301-2210020111145441357630 Q ss_pred HHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHHHHHHHC---CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 578888888875310046-75279733006857999999999871---98999957887676789999999996776428 Q gi|254780673|r 347 GIGMTYATKAAIELEKNG-IDAELIDLRTIRPMDWQTIFESVKKT---GRLVTVEEGYPQSSVGSTIANQVQRKVFDYLD 422 (467) Q Consensus 347 G~~~~~a~~aa~~L~~~g-i~~~vid~r~l~Pld~~~i~~sv~kt---~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~ 422 (467) +..++..+.+.. .+.| .++-++-+..|.||..+.+.+.+++. +.++-+.|...+-|-=..+...+.+- +... T Consensus 795 SGKvyydl~~~r--~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~~~~~~l~~~-l~~~- 870 (906) T COG0567 795 SGKVYYDLLEQR--EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWYYIQPHLEEV-LPEG- 870 (906) T ss_pred CCCHHHHHHHHH--HHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCC- T ss_conf 440679999778--646876526875201167668999999974343023556665777665277788899986-2123- Q ss_pred CCCEEECCCCCCCC Q ss_conf 98299717778888 Q gi|254780673|r 423 APILTITGRDVPMP 436 (467) Q Consensus 423 ~p~~ri~~~d~p~P 436 (467) ...+.++.+-..-| T Consensus 871 ~~l~yagRp~saSp 884 (906) T COG0567 871 DKLRYAGRPASASP 884 (906) T ss_pred CHHCCCCCCCCCCC T ss_conf 20001478766676 No 66 >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Probab=98.72 E-value=1.7e-06 Score=65.12 Aligned_cols=254 Identities=24% Similarity=0.289 Sum_probs=158.2 Q ss_pred HHHCCC---CCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC Q ss_conf 754081---11011666627899899998871886445666667899999999987886742117767888799830244 Q gi|254780673|r 181 LQEFGC---ERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGA 257 (467) Q Consensus 181 ~~~fg~---~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~ 257 (467) +-++.+ +-+|.-..+|.-..-+|.|++..|.|-.+. |---=+-+|.|.+.|.+ | .| ..-.+++.. T Consensus 49 la~~~~~l~~vy~e~s~NEkvA~e~a~GA~~~G~ral~~-mKhVGlNvAsDpl~s~a----y--~G-v~GGlviv~---- 116 (640) T COG4231 49 LAKAKKILGDVYFEWSLNEKVALETAAGASYAGVRALVT-MKHVGLNVASDPLMSLA----Y--AG-VTGGLVIVV---- 116 (640) T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCHHHHHHHH----H--CC-CCCCEEEEE---- T ss_conf 998654307389970654899999998765337002687-12356452202555543----0--37-666089998---- Q ss_pred CCCCCHHHHHHH--HHHHHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECC-CCCCCC-----C---CC--CC Q ss_conf 576444433216--887632203138665221000105556541----3783476402-123333-----3---45--33 Q gi|254780673|r 258 AARVAAQHSQCY--AAWYSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLEN-EILYGS-----S---FE--VP 320 (467) Q Consensus 258 ~~~~g~~Hs~~~--~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~-~~ly~~-----~---~~--~p 320 (467) +...|.+-||+- --||...-.+-|+.|+|+++++.+.+.++. +..||++--- +.-..+ + .+ .| T Consensus 117 aDDpg~~SSqneqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~ 196 (640) T COG4231 117 ADDPGMHSSQNEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEP 196 (640) T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCCCCCCCC T ss_conf 16988644535667689888507612068986999999999987778738978999986430221028824666787765 Q ss_pred CCCCEECCCCC-------------------------------EEEEECC--CCCEEEEHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 46631214431-------------------------------1444316--87458602578888888875310046752 Q gi|254780673|r 321 MVDDLVIPIGR-------------------------------ARIHRQG--SDVTIISFGIGMTYATKAAIELEKNGIDA 367 (467) Q Consensus 321 ~~~~~~~p~Gk-------------------------------~~i~~~G--~ditii~~G~~~~~a~~aa~~L~~~gi~~ 367 (467) ....|.-++++ .+.+..+ .++-||+-|.......+|-+ +.|++. T Consensus 197 ~~~~~~k~~~~~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~---~lgl~~ 273 (640) T COG4231 197 EDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALE---DLGLDD 273 (640) T ss_pred CCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHH---HCCCCC T ss_conf 21243478663230674211256788999999999998648656313688785689935721799999999---758874 Q ss_pred EEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC-CCCCHHHHHHCC Q ss_conf 7973300685799999999987198999957887676789999999996776428982997177788-888966765608 Q gi|254780673|r 368 ELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVP-MPYAANLEKLAL 446 (467) Q Consensus 368 ~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p-~P~~~~le~~~~ 446 (467) .++-+-+..||+...|.+.++.-.+++||||.-. |=. .++.+-.++ ..-+..++.+|.- .|- .+= T Consensus 274 ~~lklg~~~Plp~~~i~~F~~g~~~vlVVEE~~P---~iE---~qv~~~l~~--~~~~~~v~GKd~gllP~------~GE 339 (640) T COG4231 274 ELLKLGTPYPLPEQLIENFLKGLERVLVVEEGEP---FIE---EQVKALLYD--AGLPVEVHGKDEGLLPM------EGE 339 (640) T ss_pred EEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCH---HHH---HHHHHHHHH--CCCCEEEECCCCCCCCC------CCC T ss_conf 1789458757888999999826847999955870---489---999999875--48854740344564576------566 Q ss_pred CCHHHHHHHHHHHHCCC Q ss_conf 99899999999985020 Q gi|254780673|r 447 PNVDEIIESVESICYKR 463 (467) Q Consensus 447 p~~~~I~~av~~v~~~~ 463 (467) .+.+.|..++.+.+.+. T Consensus 340 lt~~~i~~ai~~~l~~~ 356 (640) T COG4231 340 LTPEKIANAIAKFLGKE 356 (640) T ss_pred CCHHHHHHHHHHHHCCC T ss_conf 38999999999984766 No 67 >PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Probab=98.67 E-value=6.1e-08 Score=75.25 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=51.9 Q ss_pred EECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE Q ss_conf 74178976258985999953753334317778689899823788513269758999 Q gi|254780673|r 22 WKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI 77 (467) Q Consensus 22 W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i 77 (467) =+|++||.|++||+||-||-=|.-.||+|+.+|+|.+||+++| +.|.-|++|..+ T Consensus 100 pFV~vGd~V~~Gq~v~iIEaMK~mneI~a~~~G~I~~Ilv~~G-~~Veygq~Lf~i 154 (155) T PRK06302 100 PFVEVGDTVKEGQTLCIIEAMKMMNEIEADKSGVVKEILVENG-QPVEFGQPLFVI 154 (155) T ss_pred CCCCCCCEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCC-CEECCCCEEEEE T ss_conf 7424686724898899998424353240698848999985599-876399826986 No 68 >COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] Probab=98.65 E-value=2.8e-06 Score=63.65 Aligned_cols=231 Identities=20% Similarity=0.265 Sum_probs=129.1 Q ss_pred CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCCCCCCHHH Q ss_conf 10116666278998999988718864456666678999999999878867421177678887998302--4457644443 Q gi|254780673|r 188 RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPN--GAAARVAAQH 265 (467) Q Consensus 188 R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~--G~~~~~g~~H 265 (467) -++--.=+|.+.+++++|++++|-|-...-+--.|+ +..+.+ ++.+| ..+|+|+--.. |...++ |++ T Consensus 48 ~~~vq~EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~-Lm~E~l--------~~a~~-~~~P~Vi~~~~R~~ps~g~-p~~ 116 (365) T COG0674 48 GVFVQMESEIGAISAVIGASYAGARAFTATSGQGLL-LMAEAL--------GLAAG-TETPLVIVVAQRPLPSTGL-PIK 116 (365) T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCHHH-HHHHHH--------HHHHH-CCCCEEEEECCCCCCCCCC-CCC T ss_conf 679932548899999970463176016742775288-888888--------88875-5177799973567677655-566 Q ss_pred -HHHHHHHHHHHCCCEEEEEECCHHCCCHH----HHHHHCCCCEEEECCCCCCCC---C-----CC-----CCC------ Q ss_conf -32168876322031386652210001055----565413783476402123333---3-----45-----334------ Q gi|254780673|r 266 -SQCYAAWYSHVPGLKVVIPYTASDAKGLL----KAAIRDPNPVIFLENEILYGS---S-----FE-----VPM------ 321 (467) Q Consensus 266 -s~~~~~~~~~iPgl~V~~P~~~~d~~~ll----~~ai~~~~Pvi~le~~~ly~~---~-----~~-----~p~------ 321 (467) .|+ +.++.--.|.-.++-+|.+|+..+- +.|.+...||+.+.+..+-.. . .+ ++. T Consensus 117 ~dq~-D~~~~r~~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~ 195 (365) T COG0674 117 GDQS-DLMAARDTGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTA 195 (365) T ss_pred CCHH-HHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCEEEECCCCCCCCCCCCCCCCCCC T ss_conf 3337-899988147256566043778999999999987327877998502132175212343653234454212477544 Q ss_pred -------------CCC-EE---------CC---------C-------CC----EEEEE-CCCCCEEEEHHHHHHHHHHHH Q ss_conf -------------663-12---------14---------4-------31----14443-168745860257888888887 Q gi|254780673|r 322 -------------VDD-LV---------IP---------I-------GR----ARIHR-QGSDVTIISFGIGMTYATKAA 357 (467) Q Consensus 322 -------------~~~-~~---------~p---------~-------Gk----~~i~~-~G~ditii~~G~~~~~a~~aa 357 (467) ..+ +. .+ . |. ..+.. +.-++.||+||.....+.+++ T Consensus 196 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~ 275 (365) T COG0674 196 LDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAV 275 (365) T ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEEECCCHHHHHHHH T ss_conf 68888866776688825898886224332001588999999999984788765202237972789999675248689999 Q ss_pred HHHH-CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC Q ss_conf 5310-046752797330068579999999998719899995788767678999999999677642898299717778 Q gi|254780673|r 358 IELE-KNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV 433 (467) Q Consensus 358 ~~L~-~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~ 433 (467) ..+. ++|+.+.++.+|++.||+.+.|.+.+++++++.|++-....|+ .+++........+. ...+.++++.+. T Consensus 276 ~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~-~~~~l~~~~~~~~~--~~~~~~~~g~~~ 349 (365) T COG0674 276 VDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGG-LAEPLYLEVLAALY--VESRYKLGGRDF 349 (365) T ss_pred HHHHHHCCCEEEEEEEEEECCCCHHHHHHHHCCCCEEEEEEEECCCCC-CHHHHHHHHHHHEE--ECCCCCCCCEEC T ss_conf 998874185468999977568998999976134622699998236752-10028886431201--022022188636 No 69 >KOG0451 consensus Probab=98.62 E-value=3.1e-07 Score=70.32 Aligned_cols=293 Identities=19% Similarity=0.236 Sum_probs=181.8 Q ss_pred HHHHHHHHH------HCCCCCEEEEECCCCCCCCCCCCCCCH------HH-----------HCCCCCEECCCCCHHHHHH Q ss_conf 122355443------113650699932434458866532364------75-----------4081110116666278998 Q gi|254780673|r 145 ALRDAIAEE------MRRDKDVFIMGEEVAEYQGAYKVTQGL------LQ-----------EFGCERVIDTPITEHGFAG 201 (467) Q Consensus 145 a~~~a~~e~------m~~d~~~~~~gedv~~~~g~f~~t~gl------~~-----------~fg~~R~~d~pi~E~~~~G 201 (467) -|.+|-+|. |..--+|-+-||||+. |.|-.-.-+ -+ .-|.--+-|.++||.++.| T Consensus 563 kiDWaTAEAlA~GSll~qG~nVRiSGqDVGR--GTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLG 640 (913) T KOG0451 563 KIDWATAEALAIGSLLYQGHNVRISGQDVGR--GTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLG 640 (913) T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHH T ss_conf 6454778889888888536733660340476--41121211243125661353621037776871674266221766630 Q ss_pred HHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHH------HHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH Q ss_conf 99998871886--445666667899999999987------8867421177678887998302445764444332168876 Q gi|254780673|r 202 IGIGASFAGLK--PIVEFMTFNFAMQAIDQIINS------AAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWY 273 (467) Q Consensus 202 ~a~G~A~~G~~--Piv~~~~~~f~~~a~dqi~n~------~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~ 273 (467) +--||++..-+ ||-|-||.||.--| |||-+ -+||.- ...+|+-.|.| ..|.||.||-|-+--| T Consensus 641 FEyGmsienP~~L~iWEAQFGDFfNGA--QIIiDTFi~sgE~KWl~------ssglvmLLPHG-yDGAgpeHSSCRiERF 711 (913) T KOG0451 641 FEYGMSIENPNNLIIWEAQFGDFFNGA--QIIIDTFIVSGETKWLE------SSGLVMLLPHG-YDGAGPEHSSCRIERF 711 (913) T ss_pred HHCCCCCCCCCCCEEEHHHHCCCCCCC--EEEEEEEECCCCHHHHH------HCCEEEECCCC-CCCCCCCCCHHHHHHH T ss_conf 110323578653245323330313675--47876401055124454------18748982577-6888976431569999 Q ss_pred HH------------HCCCEEEEEECCHHCCCHHHHH-H-HCCCCEEEECCCCCCCCCCCCCCCCC------EECCCCCEE Q ss_conf 32------------2031386652210001055565-4-13783476402123333345334663------121443114 Q gi|254780673|r 274 SH------------VPGLKVVIPYTASDAKGLLKAA-I-RDPNPVIFLENEILYGSSFEVPMVDD------LVIPIGRAR 333 (467) Q Consensus 274 ~~------------iPgl~V~~P~~~~d~~~ll~~a-i-~~~~Pvi~le~~~ly~~~~~~p~~~~------~~~p~Gk~~ 333 (467) .+ --||.|+.|.+++.+..+|+.- + +...|.|+.-+|+|.+.--.+-..++ |.--||.. T Consensus 712 LQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~- 790 (913) T KOG0451 712 LQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDT- 790 (913) T ss_pred HHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCHHHHHHHCCCCCCCCCCCCCC- T ss_conf 9873233336777604579707997899999999998774258648855088761700120476428985115433443- Q ss_pred EEECCC-CCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCE---EEEECCCCCCCHHHHH Q ss_conf 443168-745860257888888887531004675279733006857999999999871989---9995788767678999 Q gi|254780673|r 334 IHRQGS-DVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRL---VTVEEGYPQSSVGSTI 409 (467) Q Consensus 334 i~~~G~-ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~---i~vee~~~~gg~g~~i 409 (467) +...-+ .-.|++.|.-.+...++.+.+.... .+.|+-+-.|-||....+..-.+|++.+ |--.|..++-|-=|-+ T Consensus 791 ~~~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWsFV 869 (913) T KOG0451 791 IAKPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWSFV 869 (913) T ss_pred CCCHHHHEEEEEECCCCHHHHHHHHHHCCCCC-CEEEEEHHHCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEE T ss_conf 36946701799965831434888787605555-21467525408974699999998668713211034356667861111 Q ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHH Q ss_conf 9999996776428982997177788888966765608998999999 Q gi|254780673|r 410 ANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIES 455 (467) Q Consensus 410 ~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~a 455 (467) .-+ .|+ .|-....-++.+..|.|.-...+ ...-..++|+++ T Consensus 870 rPR-FEn---~lg~~L~~~GRpelp~pAtgIG~-vH~~e~eeiva~ 910 (913) T KOG0451 870 RPR-FEN---LLGQQLHYCGRPELPTPATGIGK-VHKREVEEIVAA 910 (913) T ss_pred CHH-HHH---HHHHHHEECCCCCCCCCCCCCHH-HHHHHHHHHHHH T ss_conf 667-787---76445100578999976422103-546669998742 No 70 >KOG0450 consensus Probab=98.58 E-value=2.4e-06 Score=64.05 Aligned_cols=282 Identities=21% Similarity=0.253 Sum_probs=180.0 Q ss_pred HHHHHHHHHHH------CCCCCEEEEECCCCCCCCCCCCCC-----------------CHHHHCCCCCEECCCCCHHHHH Q ss_conf 01223554431------136506999324344588665323-----------------6475408111011666627899 Q gi|254780673|r 144 EALRDAIAEEM------RRDKDVFIMGEEVAEYQGAYKVTQ-----------------GLLQEFGCERVIDTPITEHGFA 200 (467) Q Consensus 144 ea~~~a~~e~m------~~d~~~~~~gedv~~~~g~f~~t~-----------------gl~~~fg~~R~~d~pi~E~~~~ 200 (467) +.+.+|++|.| +.--.|=+-||||. .|.|-.-. -|...=++--|-|.-+||-+.. T Consensus 647 ~~iDwal~EalAFgsLl~EG~hVRlSGQDVE--RGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVL 724 (1017) T KOG0450 647 EGVDWALAEALAFGSLLKEGIHVRLSGQDVE--RGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVL 724 (1017) T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCC--CCCCCCCHHHHCCCCCCCCEECCHHHCCCCCCCEEEECCCHHHHHEE T ss_conf 3663678889988888760726874044225--54334200220421257525451653587778545644633453200 Q ss_pred HHHHHHHHCCCCCHH--HHHHHHHH--HH-HHHHHHHH-HHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH-HHHHHHH Q ss_conf 899998871886445--66666789--99-99999987-886742117767888799830244576444433-2168876 Q gi|254780673|r 201 GIGIGASFAGLKPIV--EFMTFNFA--MQ-AIDQIINS-AAKTRYMSGGQITTSIVFRGPNGAAARVAAQHS-QCYAAWY 273 (467) Q Consensus 201 G~a~G~A~~G~~Piv--~~~~~~f~--~~-a~dqi~n~-~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~~~~~ 273 (467) |+-.|++|.--.-.| |-||.||. .| -+||.|.. -+||.-.+| +|+-.|.|. -|.||.|| ..++-++ T Consensus 725 GFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFIssGqaKW~rqsG------lVllLPHGy-eG~GPEHSSaR~ERfL 797 (1017) T KOG0450 725 GFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFISSGQAKWVRQSG------LVLLLPHGY-EGMGPEHSSARPERFL 797 (1017) T ss_pred CCEECCCCCCCCCEEEEEHHHCCCCCCCHHHHHHHHCCCHHHHHHHCC------EEEECCCCC-CCCCCCCCCCCHHHHH T ss_conf 001011126997168861332564463056487675342355665267------699746776-7889654431489998 Q ss_pred H--------------------HHCCCEEEEEECCHHCCCHHHHHHH--CCCCEEEECCCCCCCCCCCCCCCCCEE----- Q ss_conf 3--------------------2203138665221000105556541--378347640212333334533466312----- Q gi|254780673|r 274 S--------------------HVPGLKVVIPYTASDAKGLLKAAIR--DPNPVIFLENEILYGSSFEVPMVDDLV----- 326 (467) Q Consensus 274 ~--------------------~iPgl~V~~P~~~~d~~~ll~~ai~--~~~Pvi~le~~~ly~~~~~~p~~~~~~----- 326 (467) - +-=|+.|+.+++|..+..+|+.-|. ...|.|++-+|.|.+.....-..++|. T Consensus 798 Qm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~f 877 (1017) T KOG0450 798 QMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGF 877 (1017) T ss_pred HHCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCHHHHCCCCCC T ss_conf 74168974377605788877751775999428807999999998631125765885607762281003887773567787 Q ss_pred ---CC-CCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCC--CEEEEECCC Q ss_conf ---14-431144431687458602578888888875310046752797330068579999999998719--899995788 Q gi|254780673|r 327 ---IP-IGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTG--RLVTVEEGY 400 (467) Q Consensus 327 ---~p-~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~--~~i~vee~~ 400 (467) +| -||+-+-.++-.-.|++.|--.+.-.++.+....+ -++-+.-+--|.||.++.|.+.++|+. -++-+.|.. T Consensus 878 q~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~-~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~ 956 (1017) T KOG0450 878 QRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGLE-GDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEH 956 (1017) T ss_pred CEECCCCCCCCCCHHHCEEEEEECCEEEHHHHHHHHHCCCC-CCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEHHHHH T ss_conf 40241326555882235179996666753566888752755-63358872011898579999999758982034201111 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC Q ss_conf 767678999999999677642898299717778888 Q gi|254780673|r 401 PQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMP 436 (467) Q Consensus 401 ~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P 436 (467) ++-|.=+.|.-++..-. ..|..|++-++....-.| T Consensus 957 ~NmG~w~Yv~PRl~T~l-~~~~r~v~Y~GR~Psaa~ 991 (1017) T KOG0450 957 KNMGAWDYVEPRLRTAL-KRLARPVKYAGRLPSAAP 991 (1017) T ss_pred CCCCCHHHCCHHHHHHH-HHHCCCCEECCCCCCCCC T ss_conf 03674322046999998-760786345366886665 No 71 >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport. Probab=98.51 E-value=1.3e-07 Score=72.98 Aligned_cols=57 Identities=32% Similarity=0.528 Sum_probs=49.8 Q ss_pred EEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEE Q ss_conf 7898774178976258985999953753334317778689899823788513269758 Q gi|254780673|r 17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPI 74 (467) Q Consensus 17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~i 74 (467) |.|.+.+|++||.|++||+|..||.=|==.||-|+.+|+|.+|+|+.| |.|.+|++| T Consensus 560 G~i~~~~V~~G~~V~~G~vlL~~EAMKME~Ei~A~~aG~V~~i~v~~G-d~V~~gqVL 616 (616) T TIGR01108 560 GSIVKITVSEGDEVKEGEVLLVVEAMKMETEIKAAAAGIVEEILVKKG-DKVSPGQVL 616 (616) T ss_pred CCEEEEEECCCCEECCCCEEEEEECCCCCHHHCCCCCCCEEEEEECCC-CEECCCCCC T ss_conf 736999835787431577588531001112200543570112344578-750886679 No 72 >COG3957 Phosphoketolase [Carbohydrate transport and metabolism] Probab=98.46 E-value=8.9e-06 Score=60.09 Aligned_cols=225 Identities=19% Similarity=0.251 Sum_probs=139.0 Q ss_pred HHHHHHHHHHHCCCCC-EEEEECCCC---CCCCCCCCCCCHH--HH-----C-C-CCCEECCCCCHHHHHHHHHHHHHCC Q ss_conf 0122355443113650-699932434---4588665323647--54-----0-8-1110116666278998999988718 Q gi|254780673|r 144 EALRDAIAEEMRRDKD-VFIMGEEVA---EYQGAYKVTQGLL--QE-----F-G-CERVIDTPITEHGFAGIGIGASFAG 210 (467) Q Consensus 144 ea~~~a~~e~m~~d~~-~~~~gedv~---~~~g~f~~t~gl~--~~-----f-g-~~R~~d~pi~E~~~~G~a~G~A~~G 210 (467) .++.+=+.+.|+.|++ .-++|-|=. ..+++|++|+-.. +. | . ..||++ ++||++..|...|+++.| T Consensus 405 ~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtG 483 (793) T COG3957 405 TALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTG 483 (793) T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEH-HHCHHHHHHHHHHHHHCC T ss_conf 8899999999860864257647871022101789987653012445684300288863412-204888878999998517 Q ss_pred CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCCCCEEEEEECCCCCC---CCHHHHHH--HHHHHHH-HC Q ss_conf 86445-666667899999999987886742117------767888799830244576---44443321--6887632-20 Q gi|254780673|r 211 LKPIV-EFMTFNFAMQAIDQIINSAAKTRYMSG------GQITTSIVFRGPNGAAAR---VAAQHSQC--YAAWYSH-VP 277 (467) Q Consensus 211 ~~Piv-~~~~~~f~~~a~dqi~n~~ak~~~~~g------g~~~~p~v~r~p~G~~~~---~g~~Hs~~--~~~~~~~-iP 277 (467) .+-+. .|-.| ..-.|-.+|+-+||.-+.- .--+++.++. -..|+ .|-+| |+ ++.++++ .+ T Consensus 484 r~glf~sYEaF---~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~T---S~vw~QdhNGfsH-QdPgf~~~~~~k~~ 556 (793) T COG3957 484 RHGLFASYEAF---AHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLT---SHVWRQDHNGFSH-QDPGFIDHVANKKS 556 (793) T ss_pred CCCCEEEHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE---HHHHHCCCCCCCC-CCCHHHHHHHHHCC T ss_conf 76614108999---99999987530999999985056788874102000---1556546678765-79539999976165 Q ss_pred -CCEEEEEECCHHCCCHHHHHHHCCCCEEEECC----CCCCCCCCC-CCCCCCEECCCCCEEEEE--CCC-CCEEEEHHH Q ss_conf -31386652210001055565413783476402----123333345-334663121443114443--168-745860257 Q gi|254780673|r 278 -GLKVVIPYTASDAKGLLKAAIRDPNPVIFLEN----EILYGSSFE-VPMVDDLVIPIGRARIHR--QGS-DVTIISFGI 348 (467) Q Consensus 278 -gl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~----~~ly~~~~~-~p~~~~~~~p~Gk~~i~~--~G~-ditii~~G~ 348 (467) .++|.-|.|++.+-.++..|+++.+-+..+-. +..|-.-.+ +....+ -++-.+-.. +|+ |+-+.+.|. T Consensus 557 d~vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~---G~~iwewas~d~gepdvV~A~~Gd 633 (793) T COG3957 557 DIVRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTD---GAGIWEWASGDDGEPDVVMACAGD 633 (793) T ss_pred CCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEECHHHHHHHHHC---CCEEEEECCCCCCCCCEEEEECCC T ss_conf 75268658987610445667762567337997369976300019999987634---817887524799998779993587 Q ss_pred -HHHHHHHHHHHHHCCC--CCEE---EEECCCCCCCC Q ss_conf -8888888875310046--7527---97330068579 Q gi|254780673|r 349 -GMTYATKAAIELEKNG--IDAE---LIDLRTIRPMD 379 (467) Q Consensus 349 -~~~~a~~aa~~L~~~g--i~~~---vid~r~l~Pld 379 (467) .+.++++|+..|++++ +.+. |||++.|.|.- T Consensus 634 ~~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~ 670 (793) T COG3957 634 VPTIEVLAAAQILREEGPELRVRVVNVVDLMRLQPPH 670 (793) T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHCCCCC T ss_conf 3159999999999975864328999975202036876 No 73 >TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea.. Probab=98.44 E-value=9.2e-07 Score=66.98 Aligned_cols=61 Identities=28% Similarity=0.381 Sum_probs=57.8 Q ss_pred EEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE Q ss_conf 57898774178976258985999953753334317778689899823788513269758999 Q gi|254780673|r 16 EGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI 77 (467) Q Consensus 16 eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i 77 (467) .|++=|.+|++||.|++||.|+-||.=|.=|.|.||.+|+|++|++++|+ .|.-|+.+++| T Consensus 1165 ~G~~WK~~V~~G~~V~~G~~l~i~EaMKmE~~v~Ap~~G~V~~i~~~~G~-~V~aG~~l~~~ 1225 (1226) T TIGR02712 1165 AGNVWKVLVEVGDRVEAGQPLVIIEAMKMEMTVSAPVAGKVTKILCKPGD-MVDAGDILVVL 1225 (1226) T ss_pred EEEEEEEEECCCCEEECCCEEEEEEECCCCEEECCCCCCEEEEEEECCCC-CCCCCCEEEEE T ss_conf 01465665212663204873899943572112438988548899736848-22678637874 No 74 >COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Probab=98.28 E-value=3.6e-06 Score=62.80 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=21.0 Q ss_pred EECCCCCE---------EEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC Q ss_conf 43168745---------860257888888887531004675279733006857 Q gi|254780673|r 335 HRQGSDVT---------IISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPM 378 (467) Q Consensus 335 ~~~G~dit---------ii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pl 378 (467) +++|+.|+ +|+||..-.+|++....--.+ ++|--+.+.-|| T Consensus 372 V~~G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~---~~v~Gi~tn~~F 421 (645) T COG4770 372 VREGDEISPFYDPMIAKLIVHGADREEALDRLRRALAE---FEVEGIATNIPF 421 (645) T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH---HEECCCCCCHHH T ss_conf 43387235553558888864388899999999999986---084474146999 No 75 >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Probab=98.16 E-value=6e-05 Score=54.27 Aligned_cols=303 Identities=13% Similarity=0.173 Sum_probs=153.6 Q ss_pred HHHHHHHHHHHCCCC----CEEEEECCCCC-CC--------CCCCCC--------CCHHHHC--C-CCCEECCCCCHHHH Q ss_conf 012235544311365----06999324344-58--------866532--------3647540--8-11101166662789 Q gi|254780673|r 144 EALRDAIAEEMRRDK----DVFIMGEEVAE-YQ--------GAYKVT--------QGLLQEF--G-CERVIDTPITEHGF 199 (467) Q Consensus 144 ea~~~a~~e~m~~d~----~~~~~gedv~~-~~--------g~f~~t--------~gl~~~f--g-~~R~~d~pi~E~~~ 199 (467) .|.-+-|...|+ |+ +++-+=-|++. +| |.|.-. .+..-.| . ..+++.-||+|.+. T Consensus 496 mAFvRiL~~L~r-dk~ig~rIVPIvPDEARTFGMeglFrq~GIys~~GQ~Y~p~D~~~l~~YkEs~~GQiLeeGI~Eaga 574 (886) T PRK09405 496 MAFVRILNILLK-DKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQKYTPVDRDQVMYYKEDKDGQILQEGINEAGA 574 (886) T ss_pred HHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHCHHHHHH T ss_conf 899999999971-8144660575458630146828778643766774122670132666642108887142211123416 Q ss_pred HHH--HHH--HHHCCC--CCHHHHHHHH-H-HHHHHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCC--CCCCCHHHHHH Q ss_conf 989--999--887188--6445666667-8-99999999987886742117767888-799830244--57644443321 Q gi|254780673|r 200 AGI--GIG--ASFAGL--KPIVEFMTFN-F-AMQAIDQIINSAAKTRYMSGGQITTS-IVFRGPNGA--AARVAAQHSQC 268 (467) Q Consensus 200 ~G~--a~G--~A~~G~--~Piv~~~~~~-f-~~~a~dqi~n~~ak~~~~~gg~~~~p-~v~r~p~G~--~~~~g~~Hs~~ 268 (467) +.. |+| .+..|. .||- .+++ | ..|..|++ |. .|.+.+- .++-+..|+ -.|-|-|| |+ T Consensus 575 ~~s~~AagtSys~~g~pmIPfy--i~YsmFGfQRvgDl~--------Wa-agD~~aRGFLiGaTaGRTTL~GEGLQH-qD 642 (886) T PRK09405 575 MASWIAAATSYSTHNLPMIPFY--IYYSMFGFQRIGDLA--------WA-AGDQQARGFLLGGTAGRTTLNGEGLQH-ED 642 (886) T ss_pred HHHHHHHHHHHHHCCCCCEEEE--EEECCHHHHHHHHHH--------HH-HHHHCCCEEEEEECCCCCEECCCCCCC-CC T ss_conf 9999987532653598530366--763000454665788--------88-633125728984078873227411036-67 Q ss_pred H--HHHHHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECCCCCCCCCCCCCCCCCEEC-CCCCE-EEEEC--- Q ss_conf 6--887632203138665221000105556541----3783476402123333345334663121-44311-44431--- Q gi|254780673|r 269 Y--AAWYSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLENEILYGSSFEVPMVDDLVI-PIGRA-RIHRQ--- 337 (467) Q Consensus 269 ~--~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~~~ly~~~~~~p~~~~~~~-p~Gk~-~i~~~--- 337 (467) - +.+.+.+||++-.-|+.+++..-++...++ .+.-|+|.= .+|+++..-|..++-.- -|=|+ -.+++ T Consensus 643 GhS~l~astiPnc~sYDPafayElavIv~~gl~rMy~~~edvfYYi--T~~NEny~~P~~P~g~eegIikG~Y~~~~~~~ 720 (886) T PRK09405 643 GHSHILASTIPNCISYDPAFAYEVAVIVQDGLRRMYGEQENVFYYI--TVMNENYVQPAMPEGAEEGIIKGMYKLETGEG 720 (886) T ss_pred CCCHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE--ECCCCCCCCCCCCCCHHHHHHHCEEECCCCCC T ss_conf 7554788636776020633788999999999999953887649999--74676566867898628878632044233678 Q ss_pred -CCCCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCC-------CCCH--- Q ss_conf -68745860257888888887531004-67527973300685799999999987198999957887-------6767--- Q gi|254780673|r 338 -GSDVTIISFGIGMTYATKAAIELEKN-GIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYP-------QSSV--- 405 (467) Q Consensus 338 -G~ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~-------~gg~--- 405 (467) ...+.|++.|..+.++++|+++|+++ ||+++|..+.+-+-|-.+.+ .+.+.++|=--++-.. .+.- T Consensus 721 ~~~~vqLlgSG~il~evl~Aa~~L~~d~gV~adVWSvTS~~ELrRd~~--~~eR~N~L~P~~~~r~~yv~~~l~~~~gPv 798 (886) T PRK09405 721 GKGKVQLLGSGTILREVIEAAEILAKDYGVAADVWSVTSFNELARDGQ--DVERWNMLHPTEEPRVPYVTQVLNDAQGPV 798 (886) T ss_pred CCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHHCCCCCCE T ss_conf 896179993549899999999999883198621895488899999899--999997039987777678999847999987 Q ss_pred --HHHHHHHHHHHHHHHCCCCCEEECCCCC-CCCCCHHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf --8999999999677642898299717778-888896676560899899999999985020 Q gi|254780673|r 406 --GSTIANQVQRKVFDYLDAPILTITGRDV-PMPYAANLEKLALPNVDEIIESVESICYKR 463 (467) Q Consensus 406 --g~~i~~~i~e~~f~~L~~p~~ri~~~d~-p~P~~~~le~~~~p~~~~I~~av~~v~~~~ 463 (467) .+.-...+.+..-.++..+-..++.-.- .--+-..|-+++-.++..|+-++-..+.+. T Consensus 799 vAasDYmr~~~dqIr~~vp~~y~~LGTDGFGRSDTR~~LR~fFEVD~~~IvvaaL~aLa~~ 859 (886) T PRK09405 799 IAATDYMKAFAEQIRAFVPRDYVVLGTDGFGRSDTREALRRFFEVDAYYVVVAALKALADE 859 (886) T ss_pred EEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHC T ss_conf 9966768764999997468986563588887542479999873637899999999999985 No 76 >TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis.ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm. Probab=98.09 E-value=1.2e-05 Score=59.28 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=51.0 Q ss_pred HHHHHHHHHHHHCCCCCE-EEEEC-CCCCCCCHHHHHHHHHHCC-CE-EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 888888875310046752-79733-0068579999999998719-89-99957887676789999999996776428982 Q gi|254780673|r 350 MTYATKAAIELEKNGIDA-ELIDL-RTIRPMDWQTIFESVKKTG-RL-VTVEEGYPQSSVGSTIANQVQRKVFDYLDAPI 425 (467) Q Consensus 350 ~~~a~~aa~~L~~~gi~~-~vid~-r~l~Pld~~~i~~sv~kt~-~~-i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~ 425 (467) +..=++.|++|.+-|-++ .|=|| =.|||==-..++++++.+. -| |=+|-| -+.|.|-+-..-..|-+-|-.|.-+ T Consensus 708 L~YYt~lA~eL~~aGaHIL~iKDMAGlLKP~AAk~L~~ALre~~PD~PiH~HTH-DtSG~ava~~~aaveAGvDvvDvAv 786 (1169) T TIGR01235 708 LKYYTNLAEELVKAGAHILGIKDMAGLLKPAAAKLLIKALREKIPDLPIHLHTH-DTSGAAVASMLAAVEAGVDVVDVAV 786 (1169) T ss_pred HHHHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECC-CCHHHHHHHHHHHHHCCCCEEHHHH T ss_conf 788999999999709803430101124428999999999973279985686266-6126899999999875886114567 Q ss_pred EEECCC Q ss_conf 997177 Q gi|254780673|r 426 LTITGR 431 (467) Q Consensus 426 ~ri~~~ 431 (467) --+++. T Consensus 787 ~smSG~ 792 (1169) T TIGR01235 787 DSMSGL 792 (1169) T ss_pred HHHCCC T ss_conf 641045 No 77 >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Probab=98.01 E-value=1.7e-05 Score=58.08 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=46.3 Q ss_pred HHHHHHHHHHHHHCCCCCE-EEEECC-CCCCCCHHHHHHHHHHCCCE-EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 8888888875310046752-797330-06857999999999871989-99957887676789999999996776428982 Q gi|254780673|r 349 GMTYATKAAIELEKNGIDA-ELIDLR-TIRPMDWQTIFESVKKTGRL-VTVEEGYPQSSVGSTIANQVQRKVFDYLDAPI 425 (467) Q Consensus 349 ~~~~a~~aa~~L~~~gi~~-~vid~r-~l~Pld~~~i~~sv~kt~~~-i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~ 425 (467) .+..-++.|++|++.|..+ .|=||- .|||----.++..++.+--| |-+|-|- +.|.|-.-...-.+-+-+..|... T Consensus 692 ~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~dlPIHlHTHD-TsG~~~at~~aA~~AGvDivD~A~ 770 (1149) T COG1038 692 TLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETVDLPIHLHTHD-TSGNGVATYLAAVEAGVDIVDVAM 770 (1149) T ss_pred CHHHHHHHHHHHHHCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCC-CCCCHHHHHHHHHHCCCCHHHHHH T ss_conf 4899999999999667727876333421476999999999987448844875167-887189999999983863666654 Q ss_pred EEEC Q ss_conf 9971 Q gi|254780673|r 426 LTIT 429 (467) Q Consensus 426 ~ri~ 429 (467) --++ T Consensus 771 ~sms 774 (1149) T COG1038 771 ASMS 774 (1149) T ss_pred HHCC T ss_conf 4214 No 78 >KOG0368 consensus Probab=97.75 E-value=0.0001 Score=52.63 Aligned_cols=69 Identities=16% Similarity=0.378 Sum_probs=61.0 Q ss_pred CCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCC Q ss_conf 81157898774178976258985999953753334317778689899823788513269758999437777 Q gi|254780673|r 13 TMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGET 83 (467) Q Consensus 13 sm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege~ 83 (467) |=+-|.+++|+|..||.|..||+-+|||.=|-.|.+.|..+|+| +.+.++| +.+.-|.+||.+..+..+ T Consensus 690 sPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G-~~i~aG~vlakL~lDdpS 758 (2196) T KOG0368 690 SPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEG-DAIEAGSVLAKLTLDDPS 758 (2196) T ss_pred CCCCCCCEEEEECCCCEEECCCEEEEHEEEEEEEEEECCCCCEE-EEECCCC-CCCCCCCEEEEEECCCHH T ss_conf 89986205899548971443872000120002445630578668-9835899-735776637887448845 No 79 >KOG0369 consensus Probab=97.72 E-value=0.0001 Score=52.59 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=6.0 Q ss_pred CCCC-CCCCCCHHH Q ss_conf 5886-653236475 Q gi|254780673|r 170 YQGA-YKVTQGLLQ 182 (467) Q Consensus 170 ~~g~-f~~t~gl~~ 182 (467) |||+ |.+..-|+. T Consensus 604 WGGATFDVamRFLh 617 (1176) T KOG0369 604 WGGATFDVAMRFLH 617 (1176) T ss_pred CCCCHHHHHHHHHH T ss_conf 38831567899875 No 80 >PRK11578 macrolide transporter subunit MacA; Provisional Probab=97.70 E-value=0.00013 Score=51.94 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=30.7 Q ss_pred CEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 3334317778689899823788513269758999437 Q gi|254780673|r 44 AVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 44 at~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) -.+.|-++.+|.|.++++++|+ .|.-|++|+.|+.. T Consensus 37 ~~~~i~a~v~G~I~~i~v~~Gd-~V~kGqvL~~ld~~ 72 (347) T PRK11578 37 RKVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVIDPE 72 (347) T ss_pred EEEEEECCCCEEEEEEECCCCC-EECCCCEEEEECHH T ss_conf 8999974077899999989939-88899999998749 No 81 >PRK11556 multidrug efflux system subunit MdtA; Provisional Probab=97.62 E-value=0.00019 Score=50.82 Aligned_cols=42 Identities=24% Similarity=0.216 Sum_probs=33.7 Q ss_pred EEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 99953753334317778689899823788513269758999437 Q gi|254780673|r 37 YEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 37 ~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) -.|+-. -+++|-+..+|.|.+|++++|+ .|.-|++|+.|+.. T Consensus 80 Gtv~a~-~~v~v~~~VsG~I~~i~v~~Gd-~VkkGqvLa~iD~~ 121 (415) T PRK11556 80 GTVTAA-NTVTVRSRVDGQLMALHFQEGQ-QVKAGDLLAEIDPS 121 (415) T ss_pred EEEEEE-EEEEEEEEEEEEEEEEECCCCC-EECCCCEEEEECCH T ss_conf 999864-6999987850299999858989-97899999998835 No 82 >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional Probab=97.59 E-value=0.00075 Score=46.56 Aligned_cols=263 Identities=16% Similarity=0.246 Sum_probs=136.1 Q ss_pred CCEECCCCCHHHHHHH----HHHHHHCCCCCHHHHHHH-H-HHH-HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC- Q ss_conf 1101166662789989----999887188644566666-7-899-9999999878867421177678887998302445- Q gi|254780673|r 187 ERVIDTPITEHGFAGI----GIGASFAGLKPIVEFMTF-N-FAM-QAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAA- 258 (467) Q Consensus 187 ~R~~d~pi~E~~~~G~----a~G~A~~G~~Piv~~~~~-~-f~~-~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~- 258 (467) .+++..||+|.+.+.. |.-+|..|. |.+-|..| . |-. |--|++ |..|-+..-..++-+-.|++ T Consensus 573 GQiLeEGInEAGa~sswiAA~TsYs~hg~-pmIPfYIfYSMFGFQRvGDl~--------WAAgD~~aRGFLlGaTAGRTT 643 (898) T PRK13012 573 GQILEEGISEAGAISSWIAAATSYSVHGL-PMLPFYIYYSMFGFQRIGDLI--------WAAADQRARGFLLGATAGRTT 643 (898) T ss_pred CCCHHHCCCCHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHCCHHHHHHHH--------HHHCCCCCCEEEEECCCCCCC T ss_conf 72222131000058999875003112798-540568876640305676799--------874211135156402567420 Q ss_pred -CCCCHHHHHHHHH--HHHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECCCCCCCCCCCCCCCCCEEC-CC- Q ss_conf -7644443321688--7632203138665221000105556541----3783476402123333345334663121-44- Q gi|254780673|r 259 -ARVAAQHSQCYAA--WYSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLENEILYGSSFEVPMVDDLVI-PI- 329 (467) Q Consensus 259 -~~~g~~Hs~~~~~--~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~~~ly~~~~~~p~~~~~~~-p~- 329 (467) .|-|-|| |+-+| +.+.|||.+-.-|+.+++..-++..-++ ...-|+|.= .+|+.+..-|..++-.- -| T Consensus 644 LnGEGLQH-qDGHShllAstiPnc~sYDPafaYElavIv~~Gl~rMy~~~edvfYYi--Tv~NENY~qPamPeg~eeGIi 720 (898) T PRK13012 644 LGGEGLQH-QDGHSHLAASTIPNCRAYDPAFAYELAVIVDDGMRRMYEEQEDVFYYL--TVMNENYAQPALPEGAEEGIL 720 (898) T ss_pred CCCCCCCC-CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE--EECCCCCCCCCCCCCCHHHHH T ss_conf 36664456-776126887645653004753366669999999999985798679998--404646658688997477686 Q ss_pred -CCEEE----EECCCCCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCC-- Q ss_conf -31144----43168745860257888888887531004-67527973300685799999999987198999957887-- Q gi|254780673|r 330 -GRARI----HRQGSDVTIISFGIGMTYATKAAIELEKN-GIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYP-- 401 (467) Q Consensus 330 -Gk~~i----~~~G~ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~-- 401 (467) |--++ -..+..+.|++.|..+.++++|++.|+++ ||+++|..+.+-+-|-.+.+ .+.+.++|=--++-.. T Consensus 721 KGmY~~~~~~~~~~~~VqLLGSG~Il~evi~AaeiL~~d~gV~adVWSvTSf~ELrRda~--~~eR~N~LhP~~~~r~sy 798 (898) T PRK13012 721 KGMYRLRAAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGL--AAERANLLGPAEEPRVPY 798 (898) T ss_pred HCCEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH--HHHHHHHCCCCCCCCCCH T ss_conf 310442336778995389992569999999999999984298620672488899998799--999998409987777778 Q ss_pred -----CCCH-----HHHHHHHHHHHHHHHCCCCCEEECCCCC-CCCCCHHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf -----6767-----8999999999677642898299717778-888896676560899899999999985020 Q gi|254780673|r 402 -----QSSV-----GSTIANQVQRKVFDYLDAPILTITGRDV-PMPYAANLEKLALPNVDEIIESVESICYKR 463 (467) Q Consensus 402 -----~gg~-----g~~i~~~i~e~~f~~L~~p~~ri~~~d~-p~P~~~~le~~~~p~~~~I~~av~~v~~~~ 463 (467) .+.- .+.-...+.|..=.++..+-..++.-.- .--+-..|-+++-.++..|+-++-..+.+. T Consensus 799 v~~~L~~~~gPvVAaSDYmra~pdqIr~~vp~~y~vLGTDGFGRSDTR~~LR~fFEVDa~~IVvAaL~aLa~e 871 (898) T PRK13012 799 VTQCLAGTRGPVIAATDYVRAVPEQIRAFVPRRYVTLGTDGFGRSDTRAALRRFFEVDRHSIVLAALKALADE 871 (898) T ss_pred HHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHC T ss_conf 9998379999879967768764999998468986563588887542579999874637889999999999985 No 83 >PRK03598 hypothetical protein; Provisional Probab=97.45 E-value=0.00081 Score=46.33 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=32.8 Q ss_pred EEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 9953753334317778689899823788513269758999437 Q gi|254780673|r 38 EVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 38 eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) .||.+ .+.|-+..+|+|.+++|++| +.|.-|++|+.|+.. T Consensus 38 ~ve~~--~V~vs~~v~G~V~~v~V~eG-d~Vk~Gq~La~LD~~ 77 (331) T PRK03598 38 NVDIR--TVNLSFRVGGRLASLAVDEG-DAVKAGQVLGELDHA 77 (331) T ss_pred EEEEE--EEEECCCCCEEEEEEECCCC-CEECCCCEEEEECCH T ss_conf 99999--99991327759999986897-987799889998808 No 84 >PRK05261 putative phosphoketolase; Provisional Probab=97.34 E-value=0.0045 Score=41.10 Aligned_cols=256 Identities=17% Similarity=0.239 Sum_probs=150.0 Q ss_pred HHHHHHHHHHHCCCCCEE-EEECCC-C--CCCCCCCCCCCHHH-H-CC-------CCCEECCCCCHHHHHHHHHHHHHCC Q ss_conf 012235544311365069-993243-4--45886653236475-4-08-------1110116666278998999988718 Q gi|254780673|r 144 EALRDAIAEEMRRDKDVF-IMGEEV-A--EYQGAYKVTQGLLQ-E-FG-------CERVIDTPITEHGFAGIGIGASFAG 210 (467) Q Consensus 144 ea~~~a~~e~m~~d~~~~-~~gedv-~--~~~g~f~~t~gl~~-~-fg-------~~R~~d~pi~E~~~~G~a~G~A~~G 210 (467) .++.+-+++.|+.||+-| +||-|= . ..+.+|.+|+.-.. . +. ..||++ =+||+.+-|..-|+-+.| T Consensus 395 ~~lg~~lrdvi~~Np~~fRvf~PDEt~SNRL~av~e~t~r~w~~~~~~~d~~la~~GRVie-~LSEH~cqGwleGYlLTG 473 (786) T PRK05261 395 RVLGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPPDEHLSPDGRVME-VLSEHLCEGWLEGYLLTG 473 (786) T ss_pred HHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHCCC T ss_conf 9999999999996887661038865433441789987477403666785322477874656-556888878876532158 Q ss_pred CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC-----CCCEEEEEECCCCC---CCCHHHHHH-H-HHHHHHH-C Q ss_conf 86445-6666678999999999878867421177-67-----88879983024457---644443321-6-8876322-0 Q gi|254780673|r 211 LKPIV-EFMTFNFAMQAIDQIINSAAKTRYMSGG-QI-----TTSIVFRGPNGAAA---RVAAQHSQC-Y-AAWYSHV-P 277 (467) Q Consensus 211 ~~Piv-~~~~~~f~~~a~dqi~n~~ak~~~~~gg-~~-----~~p~v~r~p~G~~~---~~g~~Hs~~-~-~~~~~~i-P 277 (467) .+=+. .|-- | .+-.|-.+|+-+||.-++.. .+ +++++.. -..| ..|.+|..- + ..+..-- . T Consensus 474 RhGlf~sYEA--F-~~ivdSM~~Qh~KwLk~~~e~~WR~pi~SlN~llT---S~~WrQdHNGfSHQDPgfid~vl~k~~~ 547 (786) T PRK05261 474 RHGFFSSYEA--F-IHIVDSMFNQHAKWLKVAREIPWRKPIPSLNYLLT---SHVWRQDHNGFSHQDPGFIDHVANKKPD 547 (786) T ss_pred CCCCEEEHHH--H-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE---ECEEECCCCCCCCCCCHHHHHHHHCCCC T ss_conf 7764211898--9-99999999999999998652778898766126862---0113336787666796599998744888 Q ss_pred CCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCC---CCC----EECCCCCEEEEE--CC--CCCEEEEH Q ss_conf 31386652210001055565413783476402123333345334---663----121443114443--16--87458602 Q gi|254780673|r 278 GLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFEVPM---VDD----LVIPIGRARIHR--QG--SDVTIISF 346 (467) Q Consensus 278 gl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~~p~---~~~----~~~p~Gk~~i~~--~G--~ditii~~ 346 (467) =.+|..|.|++-+-..+..|+|+.+-+-++= ..+.+.|. .++ ..--+|-+.... .| -||-+.|+ T Consensus 548 ~~RvYlPpDaNtlLav~d~clrsr~~iNviV-----a~Kqp~pq~ls~eeA~~h~~~G~~iW~wAS~~~~~ePDVVla~~ 622 (786) T PRK05261 548 VIRVYLPPDANTLLAVADHCLRSRNYINVIV-----AGKQPRPQWLSMDEARKHCTKGLGIWDWASNDDGEEPDVVLACA 622 (786) T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCEEEEEE-----ECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCEEEECC T ss_conf 4799889966469999999997249168999-----77877774269999999997167386433468899999899816 Q ss_pred H-HHHHHHHHHHHHHHCC--CCCEEE---EECCCCC-----C--CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH Q ss_conf 5-7888888887531004--675279---7330068-----5--799999999987198999957887676789999999 Q gi|254780673|r 347 G-IGMTYATKAAIELEKN--GIDAEL---IDLRTIR-----P--MDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQV 413 (467) Q Consensus 347 G-~~~~~a~~aa~~L~~~--gi~~~v---id~r~l~-----P--ld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i 413 (467) | ..+.+++.|+.+|.++ .+.+.+ +||-.|. | |+-+.+-...-+.+.+|+.-.|+ -..|-..+ T Consensus 623 Gd~pt~E~lAA~~lLr~~~P~lkiR~VNVvDL~~L~~~~~hphgLsd~~Fd~lFt~DkpViFafHGY-----p~lI~~L~ 697 (786) T PRK05261 623 GDVPTLETLAAVDLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAFHGY-----PWLIHRLT 697 (786) T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECHHCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCC-----HHHHHHHH T ss_conf 7466799999999999868884799999875031179887977799899997568998879980697-----89999986 Q ss_pred HHH Q ss_conf 996 Q gi|254780673|r 414 QRK 416 (467) Q Consensus 414 ~e~ 416 (467) ..+ T Consensus 698 ~~R 700 (786) T PRK05261 698 YRR 700 (786) T ss_pred CCC T ss_conf 478 No 85 >COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Probab=97.32 E-value=0.012 Score=38.25 Aligned_cols=293 Identities=18% Similarity=0.254 Sum_probs=154.4 Q ss_pred HHHHHHHHHHHHHHHCCCC----CEEEEECCCCC-CC--CCCCCCCCHHH----HCC--------------CCCEECCCC Q ss_conf 0000012235544311365----06999324344-58--86653236475----408--------------111011666 Q gi|254780673|r 140 ITVREALRDAIAEEMRRDK----DVFIMGEEVAE-YQ--GAYKVTQGLLQ----EFG--------------CERVIDTPI 194 (467) Q Consensus 140 ~TvRea~~~a~~e~m~~d~----~~~~~gedv~~-~~--g~f~~t~gl~~----~fg--------------~~R~~d~pi 194 (467) ++.--|.-..|.+.++ |+ +++-+=-|++. +| |-|+ ..|+.. +|- ..+++.-|| T Consensus 492 iSTtmAfvr~l~~llk-dk~ig~riVpiipDearTfgmeg~f~-~~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGI 569 (887) T COG2609 492 ISTTMAFVRILNELLK-DKEIGKRIVPIIPDEARTFGMEGLFR-QIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGI 569 (887) T ss_pred CHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHCCCHHHHH-HCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHH T ss_conf 0348999999999972-11446724134674232056044332-023116777657745426554100187755287521 Q ss_pred CHHHHHHH--HHHHH--HCCCC--CHHH-HHHH------HHHHHHHHHHHHHHHHHH-HHCCCCCCCCEEEEEECCCCCC Q ss_conf 62789989--99988--71886--4456-6666------789999999998788674-2117767888799830244576 Q gi|254780673|r 195 TEHGFAGI--GIGAS--FAGLK--PIVE-FMTF------NFAMQAIDQIINSAAKTR-YMSGGQITTSIVFRGPNGAAAR 260 (467) Q Consensus 195 ~E~~~~G~--a~G~A--~~G~~--Piv~-~~~~------~f~~~a~dqi~n~~ak~~-~~~gg~~~~p~v~r~p~G~~~~ 260 (467) +|.+.+.. |+|.+ ..|.+ |+-. |.-| |.++.|.||-- + |+-|+--. -.+ -.+ T Consensus 570 nE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~waA~dq~A------RgFLLgaTag-rtT-------Lng 635 (887) T COG2609 570 NEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLLWAAGDQDA------RGFLLGATAG-RTT-------LNG 635 (887) T ss_pred CCCCHHHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH------CCEEEEECCC-CCE-------ECC T ss_conf 22037999998752543379641256454212446558889988776641------1036652578-733-------376 Q ss_pred CCHHHHHHHHHHH--HHHCCCEEEEEECCHHCCCHHHHHHH----C-C-CCEEEECCCCCCCCCCCCCCCCCEE-CCC-- Q ss_conf 4444332168876--32203138665221000105556541----3-7-8347640212333334533466312-144-- Q gi|254780673|r 261 VAAQHSQCYAAWY--SHVPGLKVVIPYTASDAKGLLKAAIR----D-P-NPVIFLENEILYGSSFEVPMVDDLV-IPI-- 329 (467) Q Consensus 261 ~g~~Hs~~~~~~~--~~iPgl~V~~P~~~~d~~~ll~~ai~----~-~-~Pvi~le~~~ly~~~~~~p~~~~~~-~p~-- 329 (467) -|-|| |+.+|.+ +.+||+.-.-|+.+.+..-++...++ . . +--.|+. +++++..-|..+... --| T Consensus 636 EGlqH-edghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~~~yYit---~~ne~~~qPamp~gae~gI~k 711 (887) T COG2609 636 EGLQH-EDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYIT---LSNENYPQPAMPEGAEEGIIK 711 (887) T ss_pred CCCCC-CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE---ECCCCCCCCCCCCCCHHHHHH T ss_conf 53345-55543166514788512484378898999999999972356678079999---646777899988861665654 Q ss_pred CCEEEEE--C--CCCCEEEEHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCC----------------CH---HHHHH Q ss_conf 3114443--1--6874586025788888888753100-4675279733006857----------------99---99999 Q gi|254780673|r 330 GRARIHR--Q--GSDVTIISFGIGMTYATKAAIELEK-NGIDAELIDLRTIRPM----------------DW---QTIFE 385 (467) Q Consensus 330 Gk~~i~~--~--G~ditii~~G~~~~~a~~aa~~L~~-~gi~~~vid~r~l~Pl----------------d~---~~i~~ 385 (467) |--.... + +..+-|++.|....++++|++.|++ .|+.++|..+.+-.-| .. +.+.. T Consensus 712 G~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v~yv~~ 791 (887) T COG2609 712 GIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTETPRVPYVAQ 791 (887) T ss_pred CEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCHHHHHHHHHCCCCCCCCCHHHHH T ss_conf 21575337878873489972413079999999987532165667353366888730357778888518987776048998 Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CCCCHHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf 9987198999957887676789999999996776428982997177788--88896676560899899999999985020 Q gi|254780673|r 386 SVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVP--MPYAANLEKLALPNVDEIIESVESICYKR 463 (467) Q Consensus 386 sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p--~P~~~~le~~~~p~~~~I~~av~~v~~~~ 463 (467) -....+-+|.+-+..+ .+.+-|-+++-.+ .+.++ .|.. --+-++|-++|-.++.-|+.|+-..+.++ T Consensus 792 ~L~~~~p~Va~tDy~~--~~a~qir~~vp~~--------y~vLG-tdgFGrSdsr~~Lr~~fevDa~~vv~Aal~~La~~ 860 (887) T COG2609 792 VLNADGPVVAVTDYMK--LFAEQIRAVVPQR--------YRVLG-TDGFGRSDSRENLRRFFEVDAYYVVVAALSALAKR 860 (887) T ss_pred HHCCCCCEEEECCCHH--HHHHHHHCCCCCE--------EEEEC-CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC T ss_conf 7436897688520037--6899975106871--------59941-47778667679999984465789999999998327 No 86 >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. Probab=97.31 E-value=0.0023 Score=43.12 Aligned_cols=267 Identities=15% Similarity=0.189 Sum_probs=134.6 Q ss_pred CCCEECCCCCHHHHHH----HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC--CC Q ss_conf 1110116666278998----99998871886445666667899999999987886742117767888799830244--57 Q gi|254780673|r 186 CERVIDTPITEHGFAG----IGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGA--AA 259 (467) Q Consensus 186 ~~R~~d~pi~E~~~~G----~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~--~~ 259 (467) ..+++..||+|.+.+. .|.-+|..|. |.+-|..| |.|-.| |=+.+. .|..|-+..-..++-+-.|+ -. T Consensus 559 ~GQILeEGInEAGa~sswiAAaTsYsth~~-pmIPfYIf-YSMFGF-QRvGDl---~WAAgD~raRGFLiGaTAGRTTLn 632 (889) T TIGR03186 559 DGQILEEGISEAGAISSWIAAATSYSVHDL-PMLPFYIY-YSMFGF-QRIGDL---IWAAADQRARGFLIGATSGKTTLG 632 (889) T ss_pred CCCCHHHCHHHHHHHHHHHHHHHHHHCCCC-EEEHHHHH-HHHHCC-CCCCCH---HHHHHHHCCCCEEEEECCCCCCCC T ss_conf 875233040233028999998751103895-21489999-987513-212533---776302103653787404544235 Q ss_pred CCCHHHHHHHHHH--HHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECCCCCCCCCCCCCCCCCEEC-----C Q ss_conf 6444433216887--632203138665221000105556541----3783476402123333345334663121-----4 Q gi|254780673|r 260 RVAAQHSQCYAAW--YSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLENEILYGSSFEVPMVDDLVI-----P 328 (467) Q Consensus 260 ~~g~~Hs~~~~~~--~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~~~ly~~~~~~p~~~~~~~-----p 328 (467) |-|-|| |+-+|+ .+.+||..-.-|+.+++..-+++.-++ .+.-|+|.= -+|+.+..-|..++-.. - T Consensus 633 GEGLQH-qDGHShllAstiPnc~sYDPafaYElAvIi~dGl~RMy~~~edvfYYi--Tv~NEny~~P~mP~~~~~~v~~g 709 (889) T TIGR03186 633 GEGLQH-QDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYL--TVTNENYAQPSLPEDRLDAVRRG 709 (889) T ss_pred CCCCCC-CCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCCCCCCCCCHHHHHHH T ss_conf 553211-662078886537875010652200227989999999986688747876--30354556878999826678602 Q ss_pred CCCE-EEE----ECCCCCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCC- Q ss_conf 4311-444----3168745860257888888887531004-67527973300685799999999987198999957887- Q gi|254780673|r 329 IGRA-RIH----RQGSDVTIISFGIGMTYATKAAIELEKN-GIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYP- 401 (467) Q Consensus 329 ~Gk~-~i~----~~G~ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~- 401 (467) |=|+ -.. ..+..+.+++.|..+.++++|++.|+++ ||+++|..+.+-+-|-.+.. .+.+.++|---++... T Consensus 710 I~kG~Y~~~~~~~~~~~vqLlgSG~il~ev~~Aa~iL~~d~gV~adVWSvTS~~EL~Rd~~--~~er~n~LhP~~~~~~~ 787 (889) T TIGR03186 710 ILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGR--AAERAQRLGDAERPPSP 787 (889) T ss_pred HHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHH--HHHHHHHCCCCCCCCCC T ss_conf 4564320354567896379991579999999999999872099641782588899987699--99999860998777778 Q ss_pred ------CC--C---HHHHHHHHHHHHHHHHCCCCCEEECCCCC-CCCCCHHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf ------67--6---78999999999677642898299717778-888896676560899899999999985020 Q gi|254780673|r 402 ------QS--S---VGSTIANQVQRKVFDYLDAPILTITGRDV-PMPYAANLEKLALPNVDEIIESVESICYKR 463 (467) Q Consensus 402 ------~g--g---~g~~i~~~i~e~~f~~L~~p~~ri~~~d~-p~P~~~~le~~~~p~~~~I~~av~~v~~~~ 463 (467) .+ | -.+.-...+.+..-.++..+-..++.-.- .--+-..|-+++-.++..|+-++-+.+.+. T Consensus 788 yv~~~L~~~~gPvvAasDymr~~~dqIr~~vp~~y~~LGTDGFGrSDTR~~LR~fFeVD~~~IvvaAL~~La~~ 861 (889) T TIGR03186 788 HVAQALGATQGPVIAATDYVRAVPELIRAYVPRRYVTLGTDGFGRSDTRAALRAFFEVDRASIVIAALQALADD 861 (889) T ss_pred HHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHC T ss_conf 79998279999879967666656999997469987573488887541579999875828899999999999985 No 87 >PRK10476 multidrug resistance protein MdtN; Provisional Probab=97.28 E-value=0.0017 Score=44.03 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=34.9 Q ss_pred CCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 976258985999953753334317778689899823788513269758999437 Q gi|254780673|r 27 GDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 27 GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) ...++-||.-++- | .+.|-+..+|.|.+++|++| +.|.-|++|+.|++. T Consensus 36 ~~~~~TddA~V~~--~--iv~Is~~VsG~V~~V~V~eg-q~VkkGq~L~~LD~~ 84 (348) T PRK10476 36 DSAPSTDDAYIDA--D--VVHVASEVGGRIVELAVTEN-QAVKKGDLLFRIDPR 84 (348) T ss_pred CCEEECCCEEEEE--E--EEEEECCCCEEEEEEEECCC-CEECCCCEEEEECCH T ss_conf 6401436259997--9--99993434459999994699-986489789997768 No 88 >pfam01855 POR_N domain. This family includes the N terminal structural domain of the pyruvate ferredoxin oxidoreductase. This domain binds thiamine diphosphate, and along with domains II and IV, is involved in inter subunit contacts. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited. Probab=97.26 E-value=0.002 Score=43.63 Aligned_cols=108 Identities=20% Similarity=0.161 Sum_probs=67.6 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCCCCHHHHHHH Q ss_conf 666627899899998871886445666667899999999987886742117767888799830--244576444433216 Q gi|254780673|r 192 TPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP--NGAAARVAAQHSQCY 269 (467) Q Consensus 192 ~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p--~G~~~~~g~~Hs~~~ 269 (467) -.=+|.+.+++++|+|.+|.|.+.. +..-=+.++.|.+..-+ ...+|+|+-.. .|...+. +.|.... T Consensus 41 ~~e~E~~A~~~~~GAs~aGara~ta-Ts~~Gl~lm~e~l~~aa---------g~~~P~V~~v~~R~~~~~gl-~~~~eq~ 109 (230) T pfam01855 41 QMESEIGAISAVIGAAAAGARAMTA-TSGQGLLLMIENLGKAA---------GEELPIVIHVVARAGPSPGL-SIFGDQG 109 (230) T ss_pred EECCHHHHHHHHHHHHHHCCCEEEE-CCCCCHHHHHHHHHHHH---------HCCCCEEEEEEECCCCCCCC-CCCCCHH T ss_conf 8088799999999999848620440-26752767567888998---------73688599999667899877-6665137 Q ss_pred HHHHHHHCCCEEEEEECCHHCCCHHHH----HHHCCCCEEEECCC Q ss_conf 887632203138665221000105556----54137834764021 Q gi|254780673|r 270 AAWYSHVPGLKVVIPYTASDAKGLLKA----AIRDPNPVIFLENE 310 (467) Q Consensus 270 ~~~~~~iPgl~V~~P~~~~d~~~ll~~----ai~~~~Pvi~le~~ 310 (467) ..++..--|+-|++|+|++|++.+... |.+...||+.+-+. T Consensus 110 D~~~~rd~g~~vl~~~~~QEa~d~~~~A~~lae~~~~Pv~v~~Dg 154 (230) T pfam01855 110 DLMAARDTGWIVLAPENVQEAFDLALVAFNLAEKVRTPVIHLFDG 154 (230) T ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 899998569089946999999999999999999988998998256 No 89 >PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed Probab=97.22 E-value=0.0019 Score=43.71 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=39.5 Q ss_pred EECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 74178976258985999953753334317778689899823788513269758999437 Q gi|254780673|r 22 WKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 22 W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) ..++.++.-..-+..-.|+.. -.+++-+..+|.|.++++++|+ .|.-|++|+.|+.. T Consensus 41 ~~v~~~~~~~~~~~~G~v~a~-~~v~l~~~v~G~v~~v~v~~Gd-~V~kGq~La~lD~~ 97 (385) T PRK09578 41 VTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQ-EVKQGAVLFRIDPA 97 (385) T ss_pred EEEEEECCCEEEEEEEEEEEE-EEEEEEEECCEEEEEEEECCCC-EECCCCEEEEECCH T ss_conf 998773322699999999987-9999996644699999807999-87389889998534 No 90 >TIGR03077 not_gcvH glycine cleavage protein H homolog, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown. Probab=97.19 E-value=0.00047 Score=47.99 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=37.0 Q ss_pred ECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECC Q ss_conf 41789762589859999537533343177786898998237 Q gi|254780673|r 23 KKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPN 63 (467) Q Consensus 23 ~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~e 63 (467) +.++|+.|++||.+++||+.|++.|+.||.+|+|.++--.. T Consensus 37 lp~~G~~v~~g~~~~~vEs~K~~~~i~sPvsG~VvevN~~l 77 (110) T TIGR03077 37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIAL 77 (110) T ss_pred CCCCCCEEECCCEEEEEEECEEEECCCCCCCEEEEEEHHHH T ss_conf 78999988579859999965161202078766999866845 No 91 >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca Probab=97.15 E-value=0.0041 Score=41.39 Aligned_cols=141 Identities=25% Similarity=0.282 Sum_probs=86.4 Q ss_pred HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHC--CCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 554431136506999324344588665323647540--811101166662789989999887188644566666789999 Q gi|254780673|r 149 AIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEF--GCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQA 226 (467) Q Consensus 149 a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~f--g~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a 226 (467) |++|.|+..---.+|| + .|+. ...|.+.+ .+.+-+.....|++...+|.|+|..+.+|++.....-.++.+ T Consensus 2 Ala~~L~~~GV~~vFg--i--pG~~---~~~l~dal~~~~~~~~v~~~hE~~A~~mAdgyar~~g~~v~~~t~GpG~~n~ 74 (154) T cd06586 2 AFAEVLTAWGVRHVFG--Y--PGDE---ISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNA 74 (154) T ss_pred HHHHHHHHCCCCEEEE--C--CCCC---HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHH T ss_conf 7899999879998998--6--8703---7999999986399579912858899999999999749948996379579989 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEE-CC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHH----HHHC Q ss_conf 9999987886742117767888799830-24-4576444433216887632203138665221000105556----5413 Q gi|254780673|r 227 IDQIINSAAKTRYMSGGQITTSIVFRGP-NG-AAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKA----AIRD 300 (467) Q Consensus 227 ~dqi~n~~ak~~~~~gg~~~~p~v~r~p-~G-~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~----ai~~ 300 (467) +..|.+ |. .-+.||++.+. .+ ...+.+.++..+...+|+.+....... .++.++...++. +... T Consensus 75 ~~gl~~-A~--------~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v-~~~~~~~~~l~~A~~~a~~~ 144 (154) T cd06586 75 INGLAD-AA--------AEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISS-PSPAELPAGIDHAIRTAYAS 144 (154) T ss_pred HHHHHH-HH--------HCCCCEEEEECCCCHHHCCCCCCCCHHHHHHHHHHHHEEEEC-CCHHHHHHHHHHHHHHHHCC T ss_conf 999999-98--------756988999668887662789883113999999998648994-99999999999999998549 Q ss_pred CCCEEE Q ss_conf 783476 Q gi|254780673|r 301 PNPVIF 306 (467) Q Consensus 301 ~~Pvi~ 306 (467) |+||.. T Consensus 145 pGPv~l 150 (154) T cd06586 145 QGPVVV 150 (154) T ss_pred CCCEEE T ss_conf 987898 No 92 >KOG0559 consensus Probab=97.13 E-value=0.0015 Score=44.40 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=26.4 Q ss_pred CEEEEEEEECCCCCEECCCCEEEEEECC Q ss_conf 1578987741789762589859999537 Q gi|254780673|r 15 TEGNIAKWKKNEGDLIKQGDIIYEVETD 42 (467) Q Consensus 15 ~eG~i~~W~vk~GD~V~~gd~l~eiETD 42 (467) ..|+|.+.+||+||+|+.|+.|+.|++- T Consensus 122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457) T KOG0559 122 ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457) T ss_pred CCCEEEEEECCCCCCCCCCCEEEEECCC T ss_conf 7642457740789750478645773588 No 93 >PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional Probab=97.12 E-value=0.0025 Score=42.88 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=28.9 Q ss_pred EEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC Q ss_conf 3431777868989982378851326975899943 Q gi|254780673|r 46 MEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ 79 (467) Q Consensus 46 ~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ 79 (467) +-|-+..+|.|.+++|.+| +.|.-|++|+.|+. T Consensus 48 v~Vsp~VsG~V~eV~V~dn-q~VkkGdvL~~ID~ 80 (310) T PRK10559 48 VAIAPDVSGLITQVNVHDN-QLVKKGQVLFTIDQ 80 (310) T ss_pred EEEECCCCEEEEEEECCCC-CEECCCCEEEEECC T ss_conf 9993667469999991794-98769988999876 No 94 >PRK00624 glycine cleavage system protein H; Provisional Probab=97.12 E-value=0.00066 Score=46.98 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=36.7 Q ss_pred ECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC Q ss_conf 4178976258985999953753334317778689899823 Q gi|254780673|r 23 KKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCP 62 (467) Q Consensus 23 ~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~ 62 (467) +.++|+.|++||.+++||+.|++.|+.||.+|+|.++--+ T Consensus 38 lp~~G~~v~~g~~~~~iEs~K~~~~i~sPvsG~VvevN~~ 77 (113) T PRK00624 38 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNLA 77 (113) T ss_pred CCCCCCEEECCCEEEEEEECCEEECCCCCCCEEEEEEHHH T ss_conf 7999998847985999996524411218866499985785 No 95 >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional Probab=97.11 E-value=0.029 Score=35.41 Aligned_cols=310 Identities=16% Similarity=0.112 Sum_probs=163.0 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC----CCCCC----C----CCCCCHHHHCCCCCEECCCCCH Q ss_conf 3100000000000000122355443113650699932434----45886----6----5323647540811101166662 Q gi|254780673|r 129 DSSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVA----EYQGA----Y----KVTQGLLQEFGCERVIDTPITE 196 (467) Q Consensus 129 ~~~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~----~~~g~----f----~~t~gl~~~fg~~R~~d~pi~E 196 (467) +.-.......-+|=-|||-+-+....++|... |.+.+ .|.|. | --.+.++++. +=+|--++.| T Consensus 19 dky~~~~G~v~ltG~QALVRl~l~Q~~~D~~~---GlnTagfvSGYrGSPLgg~D~~l~~a~~~L~~~--~I~f~Pg~NE 93 (1168) T PRK13030 19 DNYTATRGRIFLTGTQALVRLLLMQRRRDRAR---GLNTAGFVSGYRGSPLGGVDQALWKAKKLLDAS--DIRFLPGINE 93 (1168) T ss_pred CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCEECCCCCH T ss_conf 04026778687525589999999999999976---998551305899998217899999988568762--9776576578 Q ss_pred HHHHHHHHHHHHCCCCCHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHH Q ss_conf 7899899998871886445666-----667---89999999998788674211776788879983024457644443321 Q gi|254780673|r 197 HGFAGIGIGASFAGLKPIVEFM-----TFN---FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQC 268 (467) Q Consensus 197 ~~~~G~a~G~A~~G~~Piv~~~-----~~~---f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~ 268 (467) .-....--|--+.++.|=..+- .+. =.-|+.|-+.|-- +.|..-.-.|+.-+-.-.+......-+|| T Consensus 94 dLaATavwGsQq~~~~~~~~~dGVfg~WYGKgPGvDRsgD~~rHaN-----~~Gts~~GGvl~~~GDDh~~kSSt~~~qS 168 (1168) T PRK13030 94 DLAATAVLGTQQVEADPERTVDGVFAMWYGKGPGVDRAGDALKHGN-----AYGSSPHGGVLVVAGDDHGCVSSSMPHQS 168 (1168) T ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHH-----CCCCCCCCCEEEEEECCCCCCCCCCHHHH T ss_conf 9999998734234458998655279982077788643255876421-----23789989989998259996217765460 Q ss_pred HHHHHHHHCCCEEEEEECCHHCCCHHHH--HH-----------------------H-CCCCEEEECC--CCC-----CCC Q ss_conf 6887632203138665221000105556--54-----------------------1-3783476402--123-----333 Q gi|254780673|r 269 YAAWYSHVPGLKVVIPYTASDAKGLLKA--AI-----------------------R-DPNPVIFLEN--EIL-----YGS 315 (467) Q Consensus 269 ~~~~~~~iPgl~V~~P~~~~d~~~ll~~--ai-----------------------~-~~~Pvi~le~--~~l-----y~~ 315 (467) -. .|.+. +|-|++|++.+|...+=.. ++ . ++.++-|..+ ..+ .-+ T Consensus 169 e~-~~~~~-~mPvl~Pa~vqe~ld~Gl~g~alSR~sG~WVg~K~vtd~vessasvd~~~~r~~~~~P~~~~~~~~gl~~r 246 (1168) T PRK13030 169 DF-ALIAW-HMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSSVDLDPLRTRFPAPEGFTPPAGGLHNR 246 (1168) T ss_pred HH-HHHHC-CCCEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99-99974-99856899989999989999999877484332678632102246997786655566998767898873235 Q ss_pred CCCCCCCC-----CEEC----------CCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHC-----CCCCEEEEECCCC Q ss_conf 34533466-----3121----------44311444316874586025788888888753100-----4675279733006 Q gi|254780673|r 316 SFEVPMVD-----DLVI----------PIGRARIHRQGSDVTIISFGIGMTYATKAAIELEK-----NGIDAELIDLRTI 375 (467) Q Consensus 316 ~~~~p~~~-----~~~~----------p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~-----~gi~~~vid~r~l 375 (467) ..+.|... ++.+ +|.+..+-.....+-||+.|.......+|-+.|-- +.+...+.-+-.. T Consensus 247 ~~d~~~~qE~rl~~~kl~aa~afaraN~ldr~~~~~~~~rlGIVa~GKay~Dv~~AL~~LGid~~~~~~~Gi~l~Kvgm~ 326 (1168) T PRK13030 247 WPDLPSLAIEARLAAKLDAVRAFARANSIDRWIAPSPNARVGIVTCGKAHLDLMEALRRLGLDVADLRAAGVRIYKVGLS 326 (1168) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCC T ss_conf 78982589999999899999999986788635405999847999568449999999998599966886449469984476 Q ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEECCCCC---C-CCCCHHHHHHCCCCHH Q ss_conf 85799999999987198999957887676789999999996776428-98299717778---8-8889667656089989 Q gi|254780673|r 376 RPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLD-APILTITGRDV---P-MPYAANLEKLALPNVD 450 (467) Q Consensus 376 ~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~-~p~~ri~~~d~---p-~P~~~~le~~~~p~~~ 450 (467) +|||-+.+.+-++.-..++||||-. +-|-..+.+..|+.-+ ..|+.++-.|- | +|. .+-.+.. T Consensus 327 wPLe~~~~~~Fa~gldeIlVVEEKr------~~iE~q~k~~Ly~~~~~~rp~i~GK~d~~G~~llp~------~geL~~~ 394 (1168) T PRK13030 327 WPLEPTRIRRFADGLEEILVIEEKR------PVIEQQIKDYLYNRPEGARPRVVGKHDAAGAPLLPE------LGELRPS 394 (1168) T ss_pred CCCCHHHHHHHHHCCCEEEEEECCH------HHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC------CCCCCHH T ss_conf 5668799999983678699995036------779999999973686678875870338997963676------6775999 Q ss_pred HHHHHHHHHHCC Q ss_conf 999999998502 Q gi|254780673|r 451 EIIESVESICYK 462 (467) Q Consensus 451 ~I~~av~~v~~~ 462 (467) .|..++-+.+.+ T Consensus 395 ~ia~~l~~rl~~ 406 (1168) T PRK13030 395 LIAPVLAARLAR 406 (1168) T ss_pred HHHHHHHHHHHH T ss_conf 999999999986 No 96 >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th Probab=97.11 E-value=0.0038 Score=41.65 Aligned_cols=109 Identities=21% Similarity=0.206 Sum_probs=66.2 Q ss_pred CCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHH- Q ss_conf 1101166662789989999887188644566666789999999998788674211776788879983024457644443- Q gi|254780673|r 187 ERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQH- 265 (467) Q Consensus 187 ~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~H- 265 (467) ..++..- +|...++++.|.+++|.|..+. +..-=+.++.|.+.+-+. ..+|+|+-...-.+...|..| T Consensus 42 ~~~~~~e-~E~~A~~~~~Gas~aG~r~~t~-ts~~Gl~l~~e~l~~a~~---------~~~p~Vi~~~~r~g~~~~~~~~ 110 (160) T cd07034 42 GVVVQAE-SEHAAAEAAIGASAAGARAMTA-TSGPGLNLMAEALYLAAG---------AELPLVIVVAQRPGPSTGLPKP 110 (160) T ss_pred EEEEEEC-CHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHHHHHHH---------CCCCEEEEEEECCCCCCCCCCC T ss_conf 3899855-6899999999998639873743-065339888879999984---------7888899997458886545554 Q ss_pred HHHHHHHHHHHCC--CEEEEEECCHHCCCHHHHHH----HCCCCEEEE Q ss_conf 3216887632203--13866522100010555654----137834764 Q gi|254780673|r 266 SQCYAAWYSHVPG--LKVVIPYTASDAKGLLKAAI----RDPNPVIFL 307 (467) Q Consensus 266 s~~~~~~~~~iPg--l~V~~P~~~~d~~~ll~~ai----~~~~Pvi~l 307 (467) .|+ +.+++.--| +-|+.|+|++|++.+...++ ++..||+.+ T Consensus 111 ~q~-D~~~~~~~g~~~~vl~p~~~qE~~d~~~~A~~lae~~~~Pvi~~ 157 (160) T cd07034 111 DQS-DLMAARYGGHPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVL 157 (160) T ss_pred CCH-HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 417-89999967998799937999999999999999999868998995 No 97 >TIGR00759 aceE 2-oxo-acid dehydrogenase E1 component, homodimeric type; InterPro: IPR004660 Most members of this family are pyruvate dehydrogenase complex, E1 component. It includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogenase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of Escherichia coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. ; GO: 0016491 oxidoreductase activity. Probab=97.10 E-value=0.011 Score=38.38 Aligned_cols=219 Identities=17% Similarity=0.240 Sum_probs=133.2 Q ss_pred CCCEECCCCCHHHHH----HHHHHHHHCC--CCCHHH-HHHH------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE Q ss_conf 111011666627899----8999988718--864456-6666------78999999999878867421177678887998 Q gi|254780673|r 186 CERVIDTPITEHGFA----GIGIGASFAG--LKPIVE-FMTF------NFAMQAIDQIINSAAKTRYMSGGQITTSIVFR 252 (467) Q Consensus 186 ~~R~~d~pi~E~~~~----G~a~G~A~~G--~~Piv~-~~~~------~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r 252 (467) ...++.-||.|.+.+ -.|.-+|..| +.||=- |+-| |..+=|-||.- . =|+-||--. | T Consensus 569 ~GQ~L~EGInEaGA~~SWiAAaTSYa~hg~PMIPfYIyYSMFGfQRiGDl~WAAADQ~A----R-GFllGaTAG-----R 638 (905) T TIGR00759 569 DGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLCWAAADQRA----R-GFLLGATAG-----R 638 (905) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH----C-CCEECCCCC-----C T ss_conf 68541310556767777999864565548765415773027640157789998886532----0-000023424-----3 Q ss_pred EECCCCCCCCHHHHHHHHHHHH--HHCCCEEEEEECCHHCCCHHHHHHH---CCCC--EEEECCCCCCCCCCCCCCCCCE Q ss_conf 3024457644443321688763--2203138665221000105556541---3783--4764021233333453346631 Q gi|254780673|r 253 GPNGAAARVAAQHSQCYAAWYS--HVPGLKVVIPYTASDAKGLLKAAIR---DPNP--VIFLENEILYGSSFEVPMVDDL 325 (467) Q Consensus 253 ~p~G~~~~~g~~Hs~~~~~~~~--~iPgl~V~~P~~~~d~~~ll~~ai~---~~~P--vi~le~~~ly~~~~~~p~~~~~ 325 (467) + .-.|-|-|| |+-+|+.. .|||++-.=|+.+++..=+|...++ -.++ |.|- --.++.+..-|..++. T Consensus 639 T---TL~GEGLQH-~DGhSl~~~~~~Pnc~~YDPaFAyEvAVI~~~Gl~RMy~E~qed~FyY--~Tv~NE~y~~P~mP~~ 712 (905) T TIGR00759 639 T---TLNGEGLQH-EDGHSLVQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEKQEDVFYY--VTVLNENYVQPPMPEG 712 (905) T ss_pred C---CCCCCCCCC-CCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE--EEEECCCCCCCCCCCC T ss_conf 0---003566410-003678897353743101751023367878778973236674422476--6450578887888724 Q ss_pred -E------------CCCCCEEEEECCC-CCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHHC Q ss_conf -2------------1443114443168-745860257888888887531004-675279733006857999999999871 Q gi|254780673|r 326 -V------------IPIGRARIHRQGS-DVTIISFGIGMTYATKAAIELEKN-GIDAELIDLRTIRPMDWQTIFESVKKT 390 (467) Q Consensus 326 -~------------~p~Gk~~i~~~G~-ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid~r~l~Pld~~~i~~sv~kt 390 (467) . ..|-+.. ...++ .+=|++.|..+.++++||+.|+++ ||..+|..+-|-+=|..|. ..|++. T Consensus 713 lsh~~~~~gi~kG~Yrf~~~~-~~~~~~~vQLLgSG~i~r~v~~Aa~lLa~DyGV~sDvwSvtSf~ELaRdg--~dv~R~ 789 (905) T TIGR00759 713 LSHEEAEEGILKGLYRFETAT-EEKAKGRVQLLGSGAIMREVIEAAELLAADYGVASDVWSVTSFTELARDG--HDVERW 789 (905) T ss_pred CCHHHHHHHHHHHHHHHCCCH-HCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH--HHHHHH T ss_conf 353442677774034410000-10478713675245689999999999875178314552058756765678--999886 Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC Q ss_conf 9899995788767678999999999677642898299717778 Q gi|254780673|r 391 GRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV 433 (467) Q Consensus 391 ~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~ 433 (467) +.|==-|+- . -++|+..|.+. ++|=..|++-|- T Consensus 790 nlLHP~e~~-~----vsyVA~~L~~~-----~aPGv~iA~tDY 822 (905) T TIGR00759 790 NLLHPTETP-R----VSYVAQVLNEA-----DAPGVVIASTDY 822 (905) T ss_pred HCCCCCCCC-C----CCHHHHHHHCC-----CCCCEEEEECCH T ss_conf 425878888-7----64898974127-----998069985221 No 98 >cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue. Probab=97.09 E-value=0.00095 Score=45.84 Aligned_cols=47 Identities=26% Similarity=0.184 Sum_probs=39.2 Q ss_pred EEEEE-EECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECC Q ss_conf 78987-741789762589859999537533343177786898998237 Q gi|254780673|r 17 GNIAK-WKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPN 63 (467) Q Consensus 17 G~i~~-W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~e 63 (467) |.|.. -+.++|+.|+.||.++.||++|++.++.||.+|+|.++--.. T Consensus 29 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~~N~~l 76 (96) T cd06848 29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEAL 76 (96) T ss_pred CCEEEEECCCCCCCCCCCCEEEEEEECCEEEEEECCCCEEEEEEHHHH T ss_conf 998999917999701389859999963357887377166999837965 No 99 >KOG0238 consensus Probab=97.04 E-value=0.001 Score=45.69 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=4.9 Q ss_pred EEEHHHHHHHHH Q ss_conf 860257888888 Q gi|254780673|r 343 IISFGIGMTYAT 354 (467) Q Consensus 343 ii~~G~~~~~a~ 354 (467) +|.||..-..|+ T Consensus 386 lvvwg~dR~~Al 397 (670) T KOG0238 386 LVVWGKDREEAL 397 (670) T ss_pred EEEECCCHHHHH T ss_conf 667648789999 No 100 >PRK05704 dihydrolipoamide succinyltransferase; Validated Probab=96.98 E-value=0.01 Score=38.55 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=29.8 Q ss_pred CCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEE Q ss_conf 881157898774178976258985999953753334 Q gi|254780673|r 12 PTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVME 47 (467) Q Consensus 12 esm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~E 47 (467) |+-.+|+|.++++++||.|..|++|+.|+++..... T Consensus 49 ~s~~~G~l~ki~~~eGd~v~VG~~ia~I~~~~~~~~ 84 (406) T PRK05704 49 PAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAAGA 84 (406) T ss_pred CCCCCEEEEEEEECCCCEECCCCEEEEEECCCCCCC T ss_conf 488898999983089899668998999826887666 No 101 >PRK09859 multidrug efflux system protein MdtE; Provisional Probab=96.93 E-value=0.0037 Score=41.68 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=30.7 Q ss_pred CEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 3334317778689899823788513269758999437 Q gi|254780673|r 44 AVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 44 at~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) -..++-+..+|.|.++.+++| +.|.-|++|+.|+.. T Consensus 60 ~~~~l~~~VsG~v~~~~v~~G-d~VkkGq~La~LD~~ 95 (385) T PRK09859 60 EVAEIRPQVGGIIIKRNFIEG-DKVNQGDSLYQIDPA 95 (385) T ss_pred EEEEEEEECCEEEEEEECCCC-CEEECCCEEEEECCH T ss_conf 899998145629999983899-988489889982847 No 102 >PRK13380 glycine cleavage system protein H; Provisional Probab=96.90 E-value=0.0012 Score=45.09 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=36.5 Q ss_pred ECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC Q ss_conf 4178976258985999953753334317778689899823 Q gi|254780673|r 23 KKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCP 62 (467) Q Consensus 23 ~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~ 62 (467) +.++|+.|++||.++.||+.|++.++.||.+|+|.++--. T Consensus 45 lp~~g~~v~~g~~~~~iEs~K~~~~i~sPvsG~VvevN~~ 84 (132) T PRK13380 45 LPELGTKVEKGKEVATLESVKAASPVPMPLDGEVVEVNDA 84 (132) T ss_pred CCCCCCEEECCCEEEEEEECCCCCCCCCCCCCEEEEECHH T ss_conf 8999987517988999997340011127725258885343 No 103 >PRK01202 glycine cleavage system protein H; Provisional Probab=96.83 E-value=0.0016 Score=44.20 Aligned_cols=46 Identities=26% Similarity=0.234 Sum_probs=38.6 Q ss_pred EEEEEE-ECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC Q ss_conf 789877-4178976258985999953753334317778689899823 Q gi|254780673|r 17 GNIAKW-KKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCP 62 (467) Q Consensus 17 G~i~~W-~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~ 62 (467) |.|+.- +.++|+.|++||+++.||+.|++.++.||.+|+|.++--. T Consensus 37 G~i~~v~lp~~G~~v~~g~~~~~vEs~K~~~~i~sPvsG~Vv~vN~~ 83 (127) T PRK01202 37 GDIVFVELPEVGDTVKAGESFGVVESVKAASDVYAPVSGEVVEVNEA 83 (127) T ss_pred CCEEEEECCCCCCEEECCCEEEEEEECCEECCCCCCCCEEEEEECHH T ss_conf 98899984899988717987899997460211128852089986465 No 104 >pfam01597 GCV_H Glycine cleavage H-protein. This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. Probab=96.81 E-value=0.0017 Score=44.07 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=38.7 Q ss_pred EEEEEE-ECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC Q ss_conf 789877-4178976258985999953753334317778689899823 Q gi|254780673|r 17 GNIAKW-KKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCP 62 (467) Q Consensus 17 G~i~~W-~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~ 62 (467) |+|+.. +.++|+.|+.||.+++||+.|++.++.||.+|+|.++--. T Consensus 31 G~i~~v~lp~~g~~v~~g~~~~~iEs~K~v~~i~sPisG~Vv~vN~~ 77 (122) T pfam01597 31 GDLVFVELPEVGTKVKKGESLGAVESVKAASEVYAPVSGEVVEVNEK 77 (122) T ss_pred CCEEEEECCCCCCEEECCCEEEEEEECCCCCCEECCCCEEEEEEHHH T ss_conf 99899988999998516988899997365641436634279987553 No 105 >COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] Probab=96.71 E-value=0.0019 Score=43.68 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=37.8 Q ss_pred EEEEE-EECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE Q ss_conf 78987-741789762589859999537533343177786898998 Q gi|254780673|r 17 GNIAK-WKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL 60 (467) Q Consensus 17 G~i~~-W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~il 60 (467) |.|+- =+.++|+.|++||.++.||+=|+..+|.||.+|.|.++. T Consensus 39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131) T COG0509 39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131) T ss_pred CCEEEEECCCCCCEECCCCEEEEEEEEEEECCCCCCCCEEEEEEC T ss_conf 889999868998711179758999851032025278851699865 No 106 >cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. Probab=96.69 E-value=0.011 Score=38.31 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=8.1 Q ss_pred HHHHHHHHHHHCCCCCEE Q ss_conf 012235544311365069 Q gi|254780673|r 144 EALRDAIAEEMRRDKDVF 161 (467) Q Consensus 144 ea~~~a~~e~m~~d~~~~ 161 (467) |.+-.++.+++...-+.+ T Consensus 109 eriA~~l~~~l~~~aD~~ 126 (316) T cd06252 109 EMIAHYLTTELLPRADYV 126 (316) T ss_pred HHHHHHHHHHHHHHCCEE T ss_conf 999999998557529899 No 107 >TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein; InterPro: IPR001249 The proteins in this family are a component of the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC) and are involved in the first step in long-chain fatty acid synthesis. In plants this is usually located in the chloroplast. In the first step, biotin carboxylase catalyses the carboxylation of the carrier protein to form an intermediate. Next, the transcarboxylase complex transfers the carboxyl group from the intermediate to acetyl-CoA forming malonyl-CoA. This protein functions in the transfer of CO_2 from one site to another, the biotin binding site locates to the C-terminal of this protein. The biotin is specifically attached to a lysine residue in the sequence AMKM. The structure of the C-terminal domain of the biotin carboxyl carrier (BCC) protein was shown to be a flattened beta-barrel structure comprising two four-stranded beta sheets interrupted by a structural loop forming a thumb structure. The biotinyl-lysine is located on a tight beta-turn on the opposite end of the molecule. The thumb structure has been shown to attached biotin, thus stabilising the structure. ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex. Probab=96.63 E-value=0.0019 Score=43.78 Aligned_cols=58 Identities=31% Similarity=0.355 Sum_probs=53.3 Q ss_pred EEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE Q ss_conf 87741789762589859999537533343177786898998237885132697589994 Q gi|254780673|r 20 AKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAIL 78 (467) Q Consensus 20 ~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~ 78 (467) +.-.++.||.|+.||.+|-+|.-|...++++...|.+.+++++.| +-|.-|+++..+. T Consensus 101 ~~p~~~~g~~~~~g~~~c~~ea~k~~n~~e~~~~g~~~~~~~~~g-~~~e~g~~l~~~~ 158 (159) T TIGR00531 101 AKPFVEVGDKVNKGDGVCIVEAMKLMNEIEAEVAGEVVEILVEDG-QPVEYGEPLILIE 158 (159) T ss_pred CCCEEEECCEECCCCEEEHHHHHHHHHHHCCCCCCEEEEEEECCC-CCCCCCCEEEEEE T ss_conf 664021055002463320124555654420024653789974288-5010386246761 No 108 >PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional Probab=96.61 E-value=0.016 Score=37.31 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=25.5 Q ss_pred CEEEEECCCCCEEEEEEE-CCCCCCCCCCCEEEEEEC Q ss_conf 333431777868989982-378851326975899943 Q gi|254780673|r 44 AVMEVESIDEGILGKILC-PNGTKNVKVNTPIAAILQ 79 (467) Q Consensus 44 at~EV~A~~~G~i~~ilv-~eG~e~V~VG~~ia~i~~ 79 (467) -+..|.+-.+|.|.++.+ ..| +.|.-|++|+.|-. T Consensus 120 ~~~~v~~r~~G~Ie~L~v~~~G-~~V~kGq~L~~lYS 155 (407) T PRK09783 120 QYAIVQARAAGFIDKVYPLTVG-DKVQKGTPLLDLTI 155 (407) T ss_pred CEEEEEECCCCEEEEEEECCCC-CEECCCCEEEEEEC T ss_conf 3289971035268898742578-78738978899938 No 109 >TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins. Probab=96.22 E-value=0.018 Score=36.95 Aligned_cols=56 Identities=29% Similarity=0.363 Sum_probs=38.1 Q ss_pred EEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCC Q ss_conf 87741789762589859999537533343177786898998237885132697589994377 Q gi|254780673|r 20 AKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEG 81 (467) Q Consensus 20 ~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~eg 81 (467) -.|.++.||.|++||+|..|.. ..|.||.+|+|+- ++.+|.+ |+.|..|+-|+--+ T Consensus 175 ~~~~~~IGd~V~kG~vig~v~~----~pV~A~i~GilRG-lirdG~~-V~~G~Ki~dIDPR~ 230 (256) T TIGR03309 175 VTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLT-VTEGLKIGDVDPRG 230 (256) T ss_pred EECHHHCCCEEECCCEEEEECC----EEEEEECCCEEEE-EECCCCC-CCCCCEEEEECCCC T ss_conf 8541441896867968999899----8898765848972-4128978-67998899877998 No 110 >PTZ00144 dihydrolipoamide succinyltransferase; Provisional Probab=96.21 E-value=0.022 Score=36.25 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=28.4 Q ss_pred CCCCEEEEEEEECCCCCEECCCCEEEEEECCC Q ss_conf 88115789877417897625898599995375 Q gi|254780673|r 12 PTMTEGNIAKWKKNEGDLIKQGDIIYEVETDK 43 (467) Q Consensus 12 esm~eG~i~~W~vk~GD~V~~gd~l~eiETDK 43 (467) |+-.+|+|.++++++||.|..|++|++|+++- T Consensus 104 eSp~~G~l~kIlv~eGd~V~VG~~la~I~~~~ 135 (430) T PTZ00144 104 NSKFSGVLSKIFAEVGDTVLVGKPLCEIDTSG 135 (430) T ss_pred CCCCCEEEEEEEECCCCEEECCCEEEEEECCC T ss_conf 57789799998637999894698699996687 No 111 >PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional Probab=96.02 E-value=0.0059 Score=40.28 Aligned_cols=43 Identities=30% Similarity=0.438 Sum_probs=35.5 Q ss_pred EEEEEEECCCCCEECCCCEEEEEECCCCEEE--EECCCCCEEEEEEECCC Q ss_conf 7898774178976258985999953753334--31777868989982378 Q gi|254780673|r 17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVME--VESIDEGILGKILCPNG 64 (467) Q Consensus 17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~E--V~A~~~G~i~~ilv~eG 64 (467) |..-+.+||+||.|+.||+|++ ||...+ +.||.+|+|.+|. -| T Consensus 39 gl~pkl~VkeGD~V~~Gq~Lf~---dK~~~~v~~~SPvSG~V~~I~--rG 83 (448) T PRK05352 39 GLKPTMKVKEGDKVKKGQPLFE---DKKNPGVKFTAPASGTVSAIN--RG 83 (448) T ss_pred CCCCCEEECCCCEECCCCEEEE---CCCCCCEEEECCCCEEEEEEE--CC T ss_conf 9998568557999747985565---389896269688982995220--58 No 112 >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated Probab=96.02 E-value=0.15 Score=30.49 Aligned_cols=306 Identities=16% Similarity=0.164 Sum_probs=156.5 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC----CCCCCCC----C----CCCCCHHHHCCCCCEECCCCCHHHH Q ss_conf 00000000000001223554431136506999324----3445886----6----5323647540811101166662789 Q gi|254780673|r 132 FAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEE----VAEYQGA----Y----KVTQGLLQEFGCERVIDTPITEHGF 199 (467) Q Consensus 132 ~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~ged----v~~~~g~----f----~~t~gl~~~fg~~R~~d~pi~E~~~ 199 (467) .......-+|=-|||-+-+....++|... |.+ |..|.|. | .-.+.++++. +=+|--++.|.-. T Consensus 21 ~~~~G~v~ltG~QALVRl~l~Q~~~D~~~---GlnTagfvSGYrGSPLgg~D~~l~~a~~~L~~~--~i~f~pg~NEdLa 95 (1155) T PRK09193 21 TLERGRVFLSGIQALVRLPLLQRERDRAA---GLNTAGFISGYRGSPLGGLDQELWRAKKHLAAH--DIVFQPGLNEDLA 95 (1155) T ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCEECCCCCHHHH T ss_conf 04678788646289999999999899976---998450305799998207899999987355551--8775576578999 Q ss_pred HHHHHHHHHCCCCCHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHH Q ss_conf 9899998871886445666-----667---89999999998788674211776788879983024457644443321688 Q gi|254780673|r 200 AGIGIGASFAGLKPIVEFM-----TFN---FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAA 271 (467) Q Consensus 200 ~G~a~G~A~~G~~Piv~~~-----~~~---f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~ 271 (467) ...--|--+.++.|=..+- .+. =.-|+.|-+.|-- +.|..-.-.++.-.-.-.+......-+||-.+ T Consensus 96 ATavwGsQq~~~~~~~~~DGVfg~WYGKgPGvDRsgDalrHaN-----~~Gts~~GGvl~~~GDDh~~kSSt~~hqSe~~ 170 (1155) T PRK09193 96 ATAVWGSQQVNLFPGAKYDGVFGMWYGKGPGVDRSGDVFRHAN-----AAGTSPHGGVLALAGDDHAAKSSTLPHQSEHA 170 (1155) T ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHH-----CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH T ss_conf 9998733335668998645278983067788643165876422-----13789989989998259996116772243999 Q ss_pred HHHHHCCCEEEEEECCHHCCCH--HHHHH-----------------------H-CCC-CEEEECC------CCCCCCCCC Q ss_conf 7632203138665221000105--55654-----------------------1-378-3476402------123333345 Q gi|254780673|r 272 WYSHVPGLKVVIPYTASDAKGL--LKAAI-----------------------R-DPN-PVIFLEN------EILYGSSFE 318 (467) Q Consensus 272 ~~~~iPgl~V~~P~~~~d~~~l--l~~ai-----------------------~-~~~-Pvi~le~------~~ly~~~~~ 318 (467) |.+. +|-|++|++.+|...+ +-.++ . +++ +.+.+.. ..+.-+-.+ T Consensus 171 -~~~~-~~Pvl~Pa~vqe~ld~Gl~g~alSR~sG~Wvg~K~v~~~ve~s~~v~~~~~~~~~~~P~~~~~p~~gl~~r~~d 248 (1155) T PRK09193 171 -FAAA-GMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPD 248 (1155) T ss_pred -HHHC-CCCEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf -9874-89745799989999989999998866182330566400013135896575435666986667899870014899 Q ss_pred CCCC-----CCEEC----------CCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHC-----CCCCEEEEECCCCCCC Q ss_conf 3346-----63121----------44311444316874586025788888888753100-----4675279733006857 Q gi|254780673|r 319 VPMV-----DDLVI----------PIGRARIHRQGSDVTIISFGIGMTYATKAAIELEK-----NGIDAELIDLRTIRPM 378 (467) Q Consensus 319 ~p~~-----~~~~~----------p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~-----~gi~~~vid~r~l~Pl 378 (467) .|.. -++.+ +|.+..+-.....+-||+.|.......+|-+.|-- +.+...+.-+.-.+|| T Consensus 249 ~~~~~e~rl~~~kl~aa~afaraN~ld~~~~~~~~~r~GIva~Gka~~Dv~~Al~~LGi~~~~~~~~gi~~~Kvgm~wPL 328 (1155) T PRK09193 249 PPLAQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVTAGKSYLDVRQALRDLGLDEETAARLGIRLYKVGMVWPL 328 (1155) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCC T ss_conf 82899999999999999999986788745337999847999558249999999998289855687548469860578767 Q ss_pred CHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEECCCCC---C-CCCCHHHHHHCCCCHHHHH Q ss_conf 99999999987198999957887676789999999996776428-98299717778---8-8889667656089989999 Q gi|254780673|r 379 DWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLD-APILTITGRDV---P-MPYAANLEKLALPNVDEII 453 (467) Q Consensus 379 d~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~-~p~~ri~~~d~---p-~P~~~~le~~~~p~~~~I~ 453 (467) |-+.|.+-++--..++||||-. +-|-..|.+..|+.-+ ..|+.++-.|- | +|.. .-.++..|. T Consensus 329 e~~~~~~Fa~gl~eilVVEEKr------~~iE~qik~~Ly~~~~~~rp~v~GK~d~~G~~l~p~~------geL~~~~ia 396 (1155) T PRK09193 329 EPQGVRAFAEGLDEILVVEEKR------QIIEYQLKEELYNWPDDVRPRVVGKFDEQGNWLLPAH------GELSPAIIA 396 (1155) T ss_pred CHHHHHHHHHCCCEEEEEECCH------HHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCC------CCCCHHHHH T ss_conf 8799999984578499995045------7799999999706876779736612789999446866------772999999 Q ss_pred HHHHHHHC Q ss_conf 99999850 Q gi|254780673|r 454 ESVESICY 461 (467) Q Consensus 454 ~av~~v~~ 461 (467) .++-+.+. T Consensus 397 ~~l~~rl~ 404 (1155) T PRK09193 397 KALARRLL 404 (1155) T ss_pred HHHHHHHH T ss_conf 99999998 No 113 >cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. Probab=95.97 E-value=0.044 Score=34.19 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=8.6 Q ss_pred HHHHHHHHHHCCCCCEEE Q ss_conf 122355443113650699 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFI 162 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~ 162 (467) .+...+.+++..+-+.++ T Consensus 95 riA~~l~~~l~~~aD~~i 112 (287) T cd06251 95 RIAHLFFTEILSHADYGI 112 (287) T ss_pred HHHHHHHHHHHHHCCEEE T ss_conf 999999999885477999 No 114 >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A Probab=95.80 E-value=0.029 Score=35.40 Aligned_cols=168 Identities=16% Similarity=0.164 Sum_probs=84.0 Q ss_pred HHHCCCCCEECCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----EEEC Q ss_conf 75408111011666627899899998871-886445666667899999999987886742117767888799----8302 Q gi|254780673|r 181 LQEFGCERVIDTPITEHGFAGIGIGASFA-GLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF----RGPN 255 (467) Q Consensus 181 ~~~fg~~R~~d~pi~E~~~~G~a~G~A~~-G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~----r~p~ 255 (467) .+++.+.|.+-+ -.|.+.+|+|+|+.++ |.+|+|-.|.- =+..+.+.+...+.+..| +.|+++ ||-- T Consensus 21 ~~~~~~~~hiia-aNEG~AV~iaaG~~Latgk~p~VymQNS-GLGNavNPL~SL~~~~vY------~IP~llligWRG~p 92 (361) T TIGR03297 21 TDNNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNS-GLGNAVNPLTSLADTEVY------DIPLLLIVGWRGEP 92 (361) T ss_pred HHCCCCCCEEEE-CCCHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHCCCCCCC------CCCCEEEEEECCCC T ss_conf 744776446640-5826699999999975699747999537-720445159771766640------55617998724789 Q ss_pred CCCCCCCHHHHHHH---HHHHH--HHCCCEEEEEECCHHC----CCHHHHHHHCCCCEEEECCCCCCCC-CCCCCCCCCE Q ss_conf 44576444433216---88763--2203138665221000----1055565413783476402123333-3453346631 Q gi|254780673|r 256 GAAARVAAQHSQCY---AAWYS--HVPGLKVVIPYTASDA----KGLLKAAIRDPNPVIFLENEILYGS-SFEVPMVDDL 325 (467) Q Consensus 256 G~~~~~g~~Hs~~~---~~~~~--~iPgl~V~~P~~~~d~----~~ll~~ai~~~~Pvi~le~~~ly~~-~~~~p~~~~~ 325 (467) | ..+-|||.-.- ..++. .||=..+ |.+..++ ..++..+.+...|+.++=.+..... ........++ T Consensus 93 g--~kDEPQH~~qG~iT~~lL~~~~Ipy~il--~~~~~~~~~~i~~ai~~~~~~~~P~allv~k~tf~~~~~~~~~~~~~ 168 (361) T TIGR03297 93 G--VHDEPQHVKQGRITLSLLDALEIPWEVL--STDNDEALAQIERALAHALATSRPYALVVRKGTFASYKLKGEPANPL 168 (361) T ss_pred C--CCCCCCHHHCCCHHHHHHHHCCCCEEEC--CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCCCCCC T ss_conf 9--9886540440420299999769987990--86567899999999999999799789998377433110355555657 Q ss_pred ECCCCCEE----EEE--CCCCCEEEEHHHHHHHHHHHHHHH Q ss_conf 21443114----443--168745860257888888887531 Q gi|254780673|r 326 VIPIGRAR----IHR--QGSDVTIISFGIGMTYATKAAIEL 360 (467) Q Consensus 326 ~~p~Gk~~----i~~--~G~ditii~~G~~~~~a~~aa~~L 360 (467) ...+-+.+ +++ ..+++-|-++|..-.+..+..+.. T Consensus 169 ~~~~~Re~aI~~il~~~~~~~~iVsTTG~~SREL~~~r~~~ 209 (361) T TIGR03297 169 PTLMTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRI 209 (361) T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH T ss_conf 78889999999999837999779977886379999999862 No 115 >PRK11892 pyruvate dehydrogenase subunit beta; Provisional Probab=95.76 E-value=0.029 Score=35.43 Aligned_cols=28 Identities=39% Similarity=0.496 Sum_probs=24.7 Q ss_pred CCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 78689899823788513269758999437 Q gi|254780673|r 52 DEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 52 ~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) ..|+|.++|+++|| .|.-|+.||.|.++ T Consensus 15 ~~g~l~kw~~~~gd-~v~~gd~~aeietd 42 (464) T PRK11892 15 EEGTLAKWLKKEGD-KVKSGDVIAEIETD 42 (464) T ss_pred CCCCCEEEECCCCC-CCCCCCEEEEEEEC T ss_conf 57712146446897-52578668997506 No 116 >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component; InterPro: IPR011603 2-oxoglutarate dehydrogenase is a key enzyme in the TCA cycle, converting 2-oxoglutarate, coenzyme A and NAD(+) to succinyl-CoA, NADH and carbon dioxide . This activity of this enzyme is tightly regulated and it is a major determinant of the metabolic flux through the TCA cycle. This enzyme is composed of multiple copies of three different subunits: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3) which is often shared with similar enzymes such as pyruvate dehydrogenase . The E2 component forms a large multimeric core which binds the peripheral E1 and E3 subunits. The substrate is transferred between the active sites of the different subunits by a lipoyl moiety, bound to a lysine residue from the E2 polypeptide. This entry represents the E1 subunit of 2-oxoglutarate dehydrogenase. It catalyses the decarboxylation of this compound in a thiamine pyrophosphate-dependent manner, transferring the resultant succinyl group onto the liposyl moiety bound to the E2 subunit. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the E2 component of 2-oxoglutarate dehydrogenase enzyme. ; GO: 0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity, 0030976 thiamin pyrophosphate binding, 0006096 glycolysis. Probab=95.74 E-value=0.064 Score=33.01 Aligned_cols=282 Identities=17% Similarity=0.212 Sum_probs=164.7 Q ss_pred HHHHHHCCCCCEEEEECCCCC--C------------CCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCH Q ss_conf 554431136506999324344--5------------88665323647540811101166662789989999887188644 Q gi|254780673|r 149 AIAEEMRRDKDVFIMGEEVAE--Y------------QGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPI 214 (467) Q Consensus 149 a~~e~m~~d~~~~~~gedv~~--~------------~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Pi 214 (467) +....+.....+-+-|||.+. + |..|--...|...-+.-++.|.+++|..++|+--|.+...-+-+ T Consensus 629 ~~~~~~~~g~~~~~~g~d~~~g~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~p~~l 708 (990) T TIGR00239 629 AFATLLDDGTPVRLSGEDSGRGTFFHRHAVLHDQESGAGYTPLSHLHNGKGDFAVWNSPLSEGGVLGFEYGYALTSPETL 708 (990) T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHEECCCCCCEECCCHHCCCCCCCEEEECCCCCCCCHHHEECCCCCCCCCEE T ss_conf 44444315743032155332220122111100355663010100002454321210120120000000013323587425 Q ss_pred H--HHHHHHHH---HHHHHHHHHHH-HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHH-HHHHHHHH------------ Q ss_conf 5--66666789---99999999878-867421177678887998302445764444332-16887632------------ Q gi|254780673|r 215 V--EFMTFNFA---MQAIDQIINSA-AKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQ-CYAAWYSH------------ 275 (467) Q Consensus 215 v--~~~~~~f~---~~a~dqi~n~~-ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~-~~~~~~~~------------ 275 (467) + +.++.||. ...+||.+... .||.. .+.++...|.| ..|.||.|+. .++.++.- T Consensus 709 ~~w~~~~gd~~~~~~~~~d~~~~~g~~~w~~------~~gl~~~lp~g-~~g~gp~~~~~~~~~~l~l~~~~p~~~p~~~ 781 (990) T TIGR00239 709 VLWEAQFGDFANGAQVVIDQFISGGEQKWGR------KCGLVLLLPHG-YEGQGPEHSSGRLERFLQLAAEDPRYFPSEE 781 (990) T ss_pred EEEEHHCCCCCCCHHHHHHHHHHHHHHHHHH------HCCEEEECCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 6630000332232132234445201343332------22613551567-6777764204688999987513654476456 Q ss_pred -------HCCCEEEEEECCHHCCCHHHHH----HH-CCCCEEEECCCCCCCCCCCCCCCC-----CEECCC---CCEEEE Q ss_conf -------2031386652210001055565----41-378347640212333334533466-----312144---311444 Q gi|254780673|r 276 -------VPGLKVVIPYTASDAKGLLKAA----IR-DPNPVIFLENEILYGSSFEVPMVD-----DLVIPI---GRARIH 335 (467) Q Consensus 276 -------iPgl~V~~P~~~~d~~~ll~~a----i~-~~~Pvi~le~~~ly~~~~~~p~~~-----~~~~p~---Gk~~i~ 335 (467) --|+.|+.|+++.....+++.- ++ ...|.+.+-++.+......+...+ .|..-+ ..+... T Consensus 782 ~~~~~~~dc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pl~~~~~~~ll~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~ 861 (990) T TIGR00239 782 KLQRQHQDCNWQVCVPTTPAQLFHILRRQAKLLLREFRRPLVLLSPKSLLRHPLAVSSLEELSEGGFQPVIGEIEEGGLS 861 (990) T ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCCC T ss_conf 77643203530675134247899998888888887641420001216665141024557765235310223212202222 Q ss_pred ECCCCCE-EEEHHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC---EEEEECCCCCCCHHHHHH Q ss_conf 3168745-860257888888887531-00467527973300685799999999987198---999957887676789999 Q gi|254780673|r 336 RQGSDVT-IISFGIGMTYATKAAIEL-EKNGIDAELIDLRTIRPMDWQTIFESVKKTGR---LVTVEEGYPQSSVGSTIA 410 (467) Q Consensus 336 ~~G~dit-ii~~G~~~~~a~~aa~~L-~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~---~i~vee~~~~gg~g~~i~ 410 (467) ..-+++. ++-+...+...+...+.- ....-...++.+..+.|+....+.++..+.-+ ++-++|....-|.-.... T Consensus 862 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~p~~~~~~~~~~~~~~~~~~w~~~~p~~~g~w~~~~ 941 (990) T TIGR00239 862 LDPEEVKRLVLCSGKVYYDLSVHEQRRENGDKDLAILRIEQLYPFPHKGLKELLEPYPNLKEIVWCQEEPLNQGAWGYSE 941 (990) T ss_pred CCHHHCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC T ss_conf 45113003233336122346666655413641010101122156754789999852145100223112433445310013 Q ss_pred HHHHHH---HHHHCCCCCEEECCCCCCCCC Q ss_conf 999996---776428982997177788888 Q gi|254780673|r 411 NQVQRK---VFDYLDAPILTITGRDVPMPY 437 (467) Q Consensus 411 ~~i~e~---~f~~L~~p~~ri~~~d~p~P~ 437 (467) ..+.+- +-.|-+..++-++.+..-.|. T Consensus 942 ~~~~~~~~~~d~~~d~~~~~~g~~~~~~~~ 971 (990) T TIGR00239 942 PYLTEVLPEGDKYKDVKLRYAGRPPSGSPA 971 (990) T ss_pred CHHHHHCCCCCCCCCEEEEECCCCCCCCCC T ss_conf 102221245432121022121677555532 No 117 >cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding Probab=95.61 E-value=0.066 Score=32.91 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=5.5 Q ss_pred EEECCCCCEEEEE Q ss_conf 4317778689899 Q gi|254780673|r 47 EVESIDEGILGKI 59 (467) Q Consensus 47 EV~A~~~G~i~~i 59 (467) .++++..|+=.++ T Consensus 4 ~l~~~~~G~~~~l 16 (359) T cd06250 4 PLPSPAPGTEREL 16 (359) T ss_pred CCCCCCCCCCEEE T ss_conf 7898889980688 No 118 >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family; InterPro: IPR010129 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Type I secretion is an ABC transporter that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C terminus of the transported protein. This entry represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This entry selects a group of sequences closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.; GO: 0015031 protein transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=95.22 E-value=0.014 Score=37.68 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=30.2 Q ss_pred EEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCC Q ss_conf 34317778689899823788513269758999437777 Q gi|254780673|r 46 MEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGET 83 (467) Q Consensus 46 ~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege~ 83 (467) --|-+...|.|.+|+|.|| |.|.-|++|+.|++.... T Consensus 44 k~vQhlegGi~~~I~V~EG-~~V~~Gq~L~~Ld~t~~~ 80 (434) T TIGR01843 44 KVVQHLEGGIVREILVREG-DRVKAGQVLVELDATSVE 80 (434) T ss_pred EEEECCCCCEEEEEEECCC-CEECCCCCCEEECHHHHH T ss_conf 7996686534413552258-642037701354135789 No 119 >TIGR00527 gcvH glycine cleavage system H protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex. Probab=95.20 E-value=0.017 Score=37.03 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=34.5 Q ss_pred CCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE Q ss_conf 1789762589859999537533343177786898998 Q gi|254780673|r 24 KNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL 60 (467) Q Consensus 24 vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~il 60 (467) =.+|+.|+.||.+.-||+=|+..|+-||.+|+|.++- T Consensus 44 PEvG~~v~~~~~~G~vESVKaaSelY~Pv~Gtv~e~N 80 (132) T TIGR00527 44 PEVGAEVSAGESLGSVESVKAASELYAPVDGTVVEVN 80 (132) T ss_pred CCCCCEEECCCCEEEEEEECHHHHCCCCCCCEEEEEC T ss_conf 8847776238970144100003330389874499853 No 120 >pfam00529 HlyD HlyD family secretion protein. Probab=95.13 E-value=0.023 Score=36.12 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=30.2 Q ss_pred EEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 334317778689899823788513269758999437 Q gi|254780673|r 45 VMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 45 t~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) +++|-+..+|.|.+|+|++| +.|.-|++|+.|++. T Consensus 2 ~v~V~~~vsG~V~~i~V~~G-d~VkkGq~L~~lD~~ 36 (304) T pfam00529 2 VAEVQPQVSGIVIRILVKEG-DRVKAGDVLVRLDPT 36 (304) T ss_pred EEEECCCCCEEEEEEECCCC-CEECCCCEEEEECCH T ss_conf 66881789879999986890-998899989999868 No 121 >COG3608 Predicted deacylase [General function prediction only] Probab=95.10 E-value=0.059 Score=33.29 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=10.3 Q ss_pred HHHHHHHHHHHHHHCCCCCEEE Q ss_conf 0000122355443113650699 Q gi|254780673|r 141 TVREALRDAIAEEMRRDKDVFI 162 (467) Q Consensus 141 TvRea~~~a~~e~m~~d~~~~~ 162 (467) ++.+++-+.+..++..+-++++ T Consensus 120 s~t~ria~~l~r~L~~~aD~Vl 141 (331) T COG3608 120 SATERIADRLKRLLLPLADIVL 141 (331) T ss_pred CHHHHHHHHHHHHHHCCCCEEE T ss_conf 8799999999986420367899 No 122 >pfam05896 NQRA Na(+)-translocating NADH-quinone reductase subunit A (NQRA). This family consists of several bacterial Na(+)-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na(+)-translocating NADH: ubiquinone oxidoreductase (Na(+)-NQR) generates an electrochemical Na(+) potential driven by aerobic respiration. Probab=95.03 E-value=0.027 Score=35.70 Aligned_cols=44 Identities=27% Similarity=0.294 Sum_probs=35.9 Q ss_pred EEEEEEECCCCCEECCCCEEEEEECCCCEEE--EECCCCCEEEEEEECC Q ss_conf 7898774178976258985999953753334--3177786898998237 Q gi|254780673|r 17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVME--VESIDEGILGKILCPN 63 (467) Q Consensus 17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~E--V~A~~~G~i~~ilv~e 63 (467) |..-+.+||+||.|+.||+|++ ||-.-+ +.||.+|+|.+|.-.+ T Consensus 38 glkPkl~VkeGD~Vk~G~pLF~---dK~np~i~f~SPvsG~V~~I~RG~ 83 (257) T pfam05896 38 GMKPKMLVKEGDKVKAGQPLFE---DKKNPGVKFTAPASGTVVAINRGA 83 (257) T ss_pred CCCEEEEEECCCEEECCCEEEE---EECCCCCEEECCCCEEEEEECCCC T ss_conf 8732699834999855875799---736988468567873895010567 No 123 >PRK07051 hypothetical protein; Validated Probab=94.65 E-value=0.04 Score=34.45 Aligned_cols=26 Identities=15% Similarity=0.618 Sum_probs=22.4 Q ss_pred CEEEEEEEECCCCCEECCCCEEEEEE Q ss_conf 15789877417897625898599995 Q gi|254780673|r 15 TEGNIAKWKKNEGDLIKQGDIIYEVE 40 (467) Q Consensus 15 ~eG~i~~W~vk~GD~V~~gd~l~eiE 40 (467) ..|+|.+|+++.||.|+.||+|++|| T Consensus 54 ~~G~V~~ilv~~G~~V~~Gq~L~~Ie 79 (80) T PRK07051 54 VAGRVVRFLVDDGEPVDAGQVLMRIE 79 (80) T ss_pred CCCEEEEEEECCCCEECCCCEEEEEE T ss_conf 98299999956989867999789982 No 124 >PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Probab=94.52 E-value=0.062 Score=33.13 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=28.9 Q ss_pred EEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC Q ss_conf 3431777868989982378851326975899943 Q gi|254780673|r 46 MEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ 79 (467) Q Consensus 46 ~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ 79 (467) .+|.||-.|+|.++++++|+ .|..|++|+++.+ T Consensus 2 ~~V~Apm~G~V~~v~V~~Gd-~V~~G~~l~vlEA 34 (70) T PRK08225 2 TKVYASMAGNVWKIVVKVGD-TVEEGQDVVILES 34 (70) T ss_pred CEEECCCCEEEEEEEECCCC-EECCCCEEEEEEE T ss_conf 87857899499999928989-9899999999971 No 125 >cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. Probab=94.24 E-value=0.17 Score=30.13 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=8.9 Q ss_pred HHHHHHHHHHHCCCCCEEE Q ss_conf 0122355443113650699 Q gi|254780673|r 144 EALRDAIAEEMRRDKDVFI 162 (467) Q Consensus 144 ea~~~a~~e~m~~d~~~~~ 162 (467) |.+...+.+++...-+.++ T Consensus 93 eriA~~l~~~l~~~aD~~I 111 (288) T cd06254 93 ERIAYFLTEEVIDKADFLI 111 (288) T ss_pred HHHHHHHHHHHHHHCCEEE T ss_conf 9999999998886598999 No 126 >PRK09259 putative oxalyl-CoA decarboxylase; Validated Probab=94.16 E-value=0.24 Score=28.96 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC Q ss_conf 012235544311365-06999324344588665323647540811101166 Q gi|254780673|r 144 EALRDAIAEEMRRDK-DVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP 193 (467) Q Consensus 144 ea~~~a~~e~m~~d~-~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p 193 (467) +++.++... +.+-+ -+++.|..+.. .++...-..|.+++|- -|+.|+ T Consensus 204 ~~i~~a~~~-L~~AkrPvIi~G~G~~~-~~a~~~l~~lae~l~i-PV~tt~ 251 (572) T PRK09259 204 DAVDRAIDL-LKKAKRPLIILGKGAAY-AQADEQIREFVESTGI-PFLPMS 251 (572) T ss_pred HHHHHHHHH-HHCCCCEEEEECCCCCH-HHHHHHHHHHHHHHCC-CEEECC T ss_conf 999999999-97279809998878145-5489999999997399-767534 No 127 >pfam03894 XFP D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This family is distantly related to transketolases e.g. pfam02779. Probab=93.81 E-value=0.18 Score=29.87 Aligned_cols=148 Identities=16% Similarity=0.213 Sum_probs=88.2 Q ss_pred HHHHHHHHHCCCCC-EEEEECCC-C--CCCCCCCCCCCHH-HHC---------CCCCEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 22355443113650-69993243-4--4588665323647-540---------811101166662789989999887188 Q gi|254780673|r 146 LRDAIAEEMRRDKD-VFIMGEEV-A--EYQGAYKVTQGLL-QEF---------GCERVIDTPITEHGFAGIGIGASFAGL 211 (467) Q Consensus 146 ~~~a~~e~m~~d~~-~~~~gedv-~--~~~g~f~~t~gl~-~~f---------g~~R~~d~pi~E~~~~G~a~G~A~~G~ 211 (467) +.+=+++.++.||+ .=+||-|= + ..+.+|.+|+.-. ... .+.+.+..-+||+..-|..-|+.+.|. T Consensus 4 lg~~l~dv~~~Np~~fRvf~PDEt~SNrL~av~e~t~r~w~~~~~~~~~~~~~~~~GrV~e~LSEh~~eG~leGY~LtGr 83 (179) T pfam03894 4 LGKYLRDVVKLNDTNFRIFGPDETMSNRLWAVFEVTKRQWMMEILPPNDEELSADGGRVDEQLSEHLCEGWLEGYLLTGR 83 (179) T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 78999999996875463148872100010899987576101244787753326788504566239999999998875077 Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCCCEEEEEECCCCCC---CCHHHHHHH---HHHHHHH-C Q ss_conf 6445-6666678999999999878867421177------67888799830244576---444433216---8876322-0 Q gi|254780673|r 212 KPIV-EFMTFNFAMQAIDQIINSAAKTRYMSGG------QITTSIVFRGPNGAAAR---VAAQHSQCY---AAWYSHV-P 277 (467) Q Consensus 212 ~Piv-~~~~~~f~~~a~dqi~n~~ak~~~~~gg------~~~~p~v~r~p~G~~~~---~g~~Hs~~~---~~~~~~i-P 277 (467) +-+. .|-- | .+-+|-.+|+-+||.-++.. -.+++++.- ...|+ .|.+| |+. +.++.-- . T Consensus 84 hglf~SYEA--F-~~iv~sM~~Q~~Kwl~~~~e~~wR~~~~Sln~l~T---S~~WrqdhNg~SH-QdPgf~~~~~~k~~~ 156 (179) T pfam03894 84 HGIFASYEA--F-LHIVDSMLNQHAKWLKATREIPWRKDISSLNYLTS---STVWRQDHNGFSH-QDPGFLTVLLNKKPD 156 (179) T ss_pred CCCEEEHHH--H-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEH---HHHHCCCCCCCCC-CCCHHHHHHHHCCCC T ss_conf 665310999--9-99999999999999999773778888753322000---0233146687766-796299999853888 Q ss_pred CCEEEEEECCHHCCCHHHHHHHC Q ss_conf 31386652210001055565413 Q gi|254780673|r 278 GLKVVIPYTASDAKGLLKAAIRD 300 (467) Q Consensus 278 gl~V~~P~~~~d~~~ll~~ai~~ 300 (467) -.+|..|.|++-+-..+..++|+ T Consensus 157 ~~RvylP~DaN~lLa~~~~clrS 179 (179) T pfam03894 157 VVRVYLPPDANTLLAVFDRCLQS 179 (179) T ss_pred EEEEECCCCCCHHHHHHHHHHCC T ss_conf 05788899705499999999749 No 128 >PRK03598 hypothetical protein; Provisional Probab=93.49 E-value=0.17 Score=29.98 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=26.8 Q ss_pred CEEEEEEEECCCCCEECCCCEEEEEECCCC Q ss_conf 157898774178976258985999953753 Q gi|254780673|r 15 TEGNIAKWKKNEGDLIKQGDIIYEVETDKA 44 (467) Q Consensus 15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDKa 44 (467) ..|+|.+.+|++||.|++||+|++|+++.. T Consensus 50 v~G~V~~v~V~eGd~Vk~Gq~La~LD~~~~ 79 (331) T PRK03598 50 VGGRLASLAVDEGDAVKAGQVLGELDHAPY 79 (331) T ss_pred CCEEEEEEECCCCCEECCCCEEEEECCHHH T ss_conf 775999998689798779988999880899 No 129 >PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Probab=93.47 E-value=0.11 Score=31.38 Aligned_cols=33 Identities=6% Similarity=0.095 Sum_probs=28.9 Q ss_pred EEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC Q ss_conf 3431777868989982378851326975899943 Q gi|254780673|r 46 MEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ 79 (467) Q Consensus 46 ~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ 79 (467) -+|.||-.|+|.++++++|| .|..|++|+++.+ T Consensus 3 e~V~Apm~G~V~~v~V~~Gd-~V~~Gd~l~vlEA 35 (71) T PRK05889 3 EDVRAEIVASVLEVVVNEGD-QIGEGDTLVLLES 35 (71) T ss_pred CCCCCCCCEEEEEEEECCCC-EECCCCEEEEEEH T ss_conf 53148998489999979999-9889999999982 No 130 >cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Probab=93.34 E-value=0.12 Score=31.14 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=28.8 Q ss_pred EEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 4317778689899823788513269758999437 Q gi|254780673|r 47 EVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 47 EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) .+.||..|++.++++++|+ .|..|++++++... T Consensus 1 ~i~ap~~G~v~~~~V~~Gd-~V~~G~~l~~iE~m 33 (67) T cd06850 1 EVTAPMPGTVVKVLVKEGD-KVEAGQPLAVLEAM 33 (67) T ss_pred CEECCCCEEEEEEEECCCC-EECCCCEEEEEEEC T ss_conf 9108798899999957999-99789999999936 No 131 >COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] Probab=93.29 E-value=0.13 Score=30.85 Aligned_cols=34 Identities=26% Similarity=0.195 Sum_probs=30.3 Q ss_pred EEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC Q ss_conf 33431777868989982378851326975899943 Q gi|254780673|r 45 VMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ 79 (467) Q Consensus 45 t~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ 79 (467) -..|.||-.|++-+++|++| |.|..|+++|+|.. T Consensus 70 ~~~V~SPm~Gtv~~~~V~vG-d~V~~Gq~l~IiEA 103 (140) T COG0511 70 GTQVTSPMVGTVYKPFVEVG-DTVKAGQTLAIIEA 103 (140) T ss_pred CCEEECCCCEEEEEEEECCC-CEECCCCEEEEEEE T ss_conf 86674787618999876579-99758999999982 No 132 >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. Probab=93.27 E-value=0.7 Score=25.72 Aligned_cols=110 Identities=25% Similarity=0.228 Sum_probs=58.2 Q ss_pred CEECCCCCHHHHHHHHHHHHHCC-CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCCCCCCCHH Q ss_conf 10116666278998999988718-86445666-66789999999998788674211776788879983-02445764444 Q gi|254780673|r 188 RVIDTPITEHGFAGIGIGASFAG-LKPIVEFM-TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG-PNGAAARVAAQ 264 (467) Q Consensus 188 R~~d~pi~E~~~~G~a~G~A~~G-~~Piv~~~-~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~-p~G~~~~~g~~ 264 (467) ...++-.+=..-++.|.|++++. -+.++.++ ..+|.+-++..++|-+.+ +.++++.. -++.++--|.| T Consensus 45 ~~~~~~~~mG~~~~~A~G~k~a~p~~~Vv~~~GDG~~~~~G~~~l~~av~~---------~~~it~iv~nN~~ygmTggQ 115 (178) T cd02008 45 NAIDTCTCMGASIGVAIGMAKASEDKKVVAVIGDSTFFHSGILGLINAVYN---------KANITVVILDNRTTAMTGGQ 115 (178) T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHH---------CCCEEEEEEECCCCCCCCCC T ss_conf 000011135773789977898789983799957627766319999999982---------97959999948530013675 Q ss_pred -------------HHHHHHHHHH--HHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE Q ss_conf -------------3321688763--22031386652210001055565413783476 Q gi|254780673|r 265 -------------HSQCYAAWYS--HVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF 306 (467) Q Consensus 265 -------------Hs~~~~~~~~--~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~ 306 (467) ..-++..+.. .+..+.+..|.+..+++.+|+.|++.++|.++ T Consensus 116 ~sp~~~~~~~~~~~~~d~~~~a~a~G~~~v~~~~~~d~~~~~~~l~~A~~~~G~s~I 172 (178) T cd02008 116 PHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVI 172 (178) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 589988877787898798999997799999997844199999999999738997899 No 133 >pfam00529 HlyD HlyD family secretion protein. Probab=93.25 E-value=0.13 Score=30.80 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=29.2 Q ss_pred CCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEE Q ss_conf 11578987741789762589859999537533343 Q gi|254780673|r 14 MTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEV 48 (467) Q Consensus 14 m~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV 48 (467) -..|.|.+++|++||.|++||+|++|++.....++ T Consensus 8 ~vsG~V~~i~V~~Gd~VkkGq~L~~lD~~~~~~~~ 42 (304) T pfam00529 8 QVSGIVIRILVKEGDRVKAGDVLVRLDPTPYQAAL 42 (304) T ss_pred CCCEEEEEEECCCCCEECCCCEEEEECCHHHHHHH T ss_conf 89879999986890998899989999868999999 No 134 >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895 The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor. Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport. Probab=93.20 E-value=0.41 Score=27.35 Aligned_cols=91 Identities=18% Similarity=0.300 Sum_probs=69.2 Q ss_pred CCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEE-EEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 7458602578888888875310046752797330068579999999998719899-995788767678999999999677 Q gi|254780673|r 340 DVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLV-TVEEGYPQSSVGSTIANQVQRKVF 418 (467) Q Consensus 340 ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i-~vee~~~~gg~g~~i~~~i~e~~f 418 (467) +=-||+.|+.....+|.-+.|..+|=.+-+|.+|-=.||+.+++++++=+|=+.| |.|=.=.-|+.|.=+---|. ++| T Consensus 266 E~vIi~MGSvaeTieEtvdyL~~kG~KvGllkVrLYRPF~~~~F~~~lP~svK~IAVLDRtKEPGa~GEPLYLDV~-~A~ 344 (1194) T TIGR02176 266 ERVIIAMGSVAETIEETVDYLRSKGEKVGLLKVRLYRPFSAETFLAALPKSVKRIAVLDRTKEPGAAGEPLYLDVR-SAF 344 (1194) T ss_pred CCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHH-HHH T ss_conf 3104405856678999999997289327688875127985899998424110122212355688655684488899-886 Q ss_pred HHC--------CCCCEEECCC Q ss_conf 642--------8982997177 Q gi|254780673|r 419 DYL--------DAPILTITGR 431 (467) Q Consensus 419 ~~L--------~~p~~ri~~~ 431 (467) ..- +.-|..||+. T Consensus 345 ~e~~~~~KCPf~~~P~I~GGR 365 (1194) T TIGR02176 345 YEMQAEKKCPFESMPVIVGGR 365 (1194) T ss_pred HCCCCCCCCCCCCCCEEEEEE T ss_conf 304001688865678588630 No 135 >cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. Probab=93.02 E-value=0.34 Score=27.95 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=12.9 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 0000000000000012235544311365069 Q gi|254780673|r 131 SFAHAPTSSITVREALRDAIAEEMRRDKDVF 161 (467) Q Consensus 131 ~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~ 161 (467) ..++.+..+.| +.+...+.+++...-+.+ T Consensus 88 ~FPG~~~Gs~t--eriA~~i~~~l~~~aD~~ 116 (293) T cd06255 88 TFPGNPNGMVT--QQMAHALFEEVRGVADYL 116 (293) T ss_pred CCCCCCCCCHH--HHHHHHHHHHHHHHCCEE T ss_conf 39999999999--999999999888659999 No 136 >PRK06748 hypothetical protein; Validated Probab=92.94 E-value=0.57 Score=26.35 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=56.5 Q ss_pred CEEEEEEEECCCCCEECCCCEEEEEEC-CCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 157898774178976258985999953-753334317778689899823788513269758999437 Q gi|254780673|r 15 TEGNIAKWKKNEGDLIKQGDIIYEVET-DKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 15 ~eG~i~~W~vk~GD~V~~gd~l~eiET-DKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) -.|.+-+.++.+++.|-+=+.|+-|+| |+.-.+|.--.+|.|.-+-+++|+ .|..+++++++.++ T Consensus 12 ~~G~Vekifi~e~syVyEWEkL~~I~~~dg~le~v~vGisG~I~~v~Ve~Gq-~i~~~~lL~~vedD 77 (84) T PRK06748 12 CYGKVEKLFVTESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQ-AIADQKLLITVRDD 77 (84) T ss_pred CCCEEEEEEECCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEECCC-EECCCCEEEEEECC T ss_conf 6308899998587537864234577506982899998214278898862284-65377389998714 No 137 >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. Probab=92.80 E-value=0.48 Score=26.89 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=10.8 Q ss_pred CHHHHHHHHHHHHCCC Q ss_conf 9899999999985020 Q gi|254780673|r 448 NVDEIIESVESICYKR 463 (467) Q Consensus 448 ~~~~I~~av~~v~~~~ 463 (467) +.+++-.++++.+..+ T Consensus 513 ~~~eL~~al~~Al~~~ 528 (554) T TIGR03254 513 TPDELKAALNEALASG 528 (554) T ss_pred CHHHHHHHHHHHHHCC T ss_conf 9999999999998279 No 138 >COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion] Probab=92.39 E-value=0.14 Score=30.54 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=37.3 Q ss_pred EEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE Q ss_conf 78987741789762589859999537533343177786898998 Q gi|254780673|r 17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL 60 (467) Q Consensus 17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~il 60 (467) |.=+.-+||+||.|.+||+|.+=+. ...-|-||.+|+|.+|. T Consensus 42 g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529) T COG4656 42 GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529) T ss_pred CCCCCEEEEECCEEECCCEEECCCC--CEEEEECCCCCEEEEEE T ss_conf 9863448830888850864203678--44654279873133542 No 139 >PRK12784 hypothetical protein; Provisional Probab=92.33 E-value=0.79 Score=25.37 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=56.1 Q ss_pred CEEEEEEEECCCCCEECCCCEEEEEEC-CCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 157898774178976258985999953-753334317778689899823788513269758999437 Q gi|254780673|r 15 TEGNIAKWKKNEGDLIKQGDIIYEVET-DKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 15 ~eG~i~~W~vk~GD~V~~gd~l~eiET-DKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) -.|++-+.++.+++.|-+=+.|+-|+| |+.-.+|.--.+|.|.-+-+++|+ .|..+++++++.++ T Consensus 12 c~G~Vekifi~e~SyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq-~i~~~tlL~~~edD 77 (84) T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQ-QIHTDTLLVRLEDD 77 (84) T ss_pred CCCEEEEEEECCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEECCC-EECCCCEEEEEECC T ss_conf 6318889998587537864234577506982899998201168999862285-43477189998603 No 140 >PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Probab=91.83 E-value=0.28 Score=28.53 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=29.6 Q ss_pred EEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC Q ss_conf 33431777868989982378851326975899943 Q gi|254780673|r 45 VMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ 79 (467) Q Consensus 45 t~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ 79 (467) ...|.||-.|+|.++++++|+ .|..|++|++|.+ T Consensus 63 ~~~v~aPm~G~v~~i~v~~Gd-~V~~g~~l~vlEA 96 (132) T PRK06549 63 ADAIPSPMPGTILKVLVAVGD-QVTENQPLLILEA 96 (132) T ss_pred CCEECCCCCEEEEEEEECCCC-EECCCCEEEEEEE T ss_conf 999808999799999938999-9879998999980 No 141 >pfam04952 AstE_AspA Succinylglutamate desuccinylase / Aspartoacylase family. This family includes Succinylglutamate desuccinylase EC:3.1.-.- that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. The family also include aspartoacylase EC:3.5.1.15 which cleaves acylaspartate into a fatty acid and aspartate. Mutations in human aspartoacylase (ACY-2) lead to Canavan disease. This family is probably structurally related to pfam00246 (Bateman A pers. obs.). Probab=91.68 E-value=0.78 Score=25.42 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=8.5 Q ss_pred HHHHHHHHHHHCCCCCEEE Q ss_conf 0122355443113650699 Q gi|254780673|r 144 EALRDAIAEEMRRDKDVFI 162 (467) Q Consensus 144 ea~~~a~~e~m~~d~~~~~ 162 (467) |.+...+.+.+..+-++++ T Consensus 85 eria~~~~~~~~~~aD~~i 103 (289) T pfam04952 85 ERIADAFFRALLPRADIVL 103 (289) T ss_pred HHHHHHHHHHHHCCCCEEE T ss_conf 9999999975440577899 No 142 >PRK11556 multidrug efflux system subunit MdtA; Provisional Probab=91.58 E-value=0.24 Score=29.04 Aligned_cols=31 Identities=23% Similarity=0.504 Sum_probs=27.0 Q ss_pred CEEEEEEEECCCCCEECCCCEEEEEECCCCE Q ss_conf 1578987741789762589859999537533 Q gi|254780673|r 15 TEGNIAKWKKNEGDLIKQGDIIYEVETDKAV 45 (467) Q Consensus 15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDKat 45 (467) ..|+|.++++++||.|++||+|++|+..... T Consensus 94 VsG~I~~i~v~~Gd~VkkGqvLa~iD~~~~~ 124 (415) T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPSQFK 124 (415) T ss_pred EEEEEEEEECCCCCEECCCCEEEEECCHHHH T ss_conf 5029999985898997899999998835789 No 143 >cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Probab=91.49 E-value=0.21 Score=29.40 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=23.3 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 7778689899823788513269758999437 Q gi|254780673|r 50 SIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 50 A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) +-.+|+|.++++++|+ .|..|++|+.+.+. T Consensus 10 ~~~eg~I~~~~v~~Gd-~V~~Gd~l~~iEa~ 39 (73) T cd06663 10 HLGDGTVVKWLKKVGD-KVKKGDVLAEIEAM 39 (73) T ss_pred CCEEEEEEEEEECCCC-EECCCCEEEEEEEE T ss_conf 8307999999926999-99799999999950 No 144 >COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Probab=91.48 E-value=0.26 Score=28.71 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=20.9 Q ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 778689899823788513269758999437 Q gi|254780673|r 51 IDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 51 ~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) -.+|+|.++++++| |.|..|++|+.+.++ T Consensus 14 ~~EG~I~~W~~k~G-D~V~~gd~L~eVeTD 42 (404) T COG0508 14 MTEGTIVEWLKKVG-DKVKEGDVLVEVETD 42 (404) T ss_pred CEEEEEEEEEECCC-CEECCCCCEEEEEEC T ss_conf 13678858972699-863699806999806 No 145 >PRK10476 multidrug resistance protein MdtN; Provisional Probab=91.47 E-value=0.41 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.473 Sum_probs=27.0 Q ss_pred CEEEEEEEECCCCCEECCCCEEEEEECCCCE Q ss_conf 1578987741789762589859999537533 Q gi|254780673|r 15 TEGNIAKWKKNEGDLIKQGDIIYEVETDKAV 45 (467) Q Consensus 15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDKat 45 (467) ..|+|.+.+|++||.|++||+|++|+.+--. T Consensus 57 VsG~V~~V~V~egq~VkkGq~L~~LD~~~~~ 87 (348) T PRK10476 57 VGGRIVELAVTENQAVKKGDLLFRIDPRPYE 87 (348) T ss_pred CCEEEEEEEECCCCEECCCCEEEEECCHHHH T ss_conf 4459999994699986489789997768999 No 146 >PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Probab=91.36 E-value=0.33 Score=27.98 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=28.8 Q ss_pred EEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC Q ss_conf 431777868989982378851326975899943 Q gi|254780673|r 47 EVESIDEGILGKILCPNGTKNVKVNTPIAAILQ 79 (467) Q Consensus 47 EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ 79 (467) .|.||-.|+|.++++++|+ .|..|++++++.+ T Consensus 81 ~v~apmpG~v~~v~v~~Gd-~V~~g~~l~vlEa 112 (148) T PRK05641 81 VVTAPMPGKILKILVKEGD-QVKTGQGLLILEA 112 (148) T ss_pred EEECCCCEEEEEEEECCCC-EECCCCEEEEEEH T ss_conf 7976999089999968999-9879999999994 No 147 >PRK11578 macrolide transporter subunit MacA; Provisional Probab=91.12 E-value=0.34 Score=27.92 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=27.6 Q ss_pred CEEEEEEEECCCCCEECCCCEEEEEECCCCEE Q ss_conf 15789877417897625898599995375333 Q gi|254780673|r 15 TEGNIAKWKKNEGDLIKQGDIIYEVETDKAVM 46 (467) Q Consensus 15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~ 46 (467) .+|+|.+|++++||.|++||+|++|+++..-. T Consensus 45 v~G~I~~i~v~~Gd~V~kGqvL~~ld~~~~~~ 76 (347) T PRK11578 45 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAEN 76 (347) T ss_pred CCEEEEEEECCCCCEECCCCEEEEECHHHHHH T ss_conf 77899999989939888999999987499999 No 148 >COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion] Probab=90.90 E-value=0.36 Score=27.78 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=32.9 Q ss_pred EEECCCCCEECCCCEEEEEECCCCE--EEEECCCCCEEEEEEECC Q ss_conf 7741789762589859999537533--343177786898998237 Q gi|254780673|r 21 KWKKNEGDLIKQGDIIYEVETDKAV--MEVESIDEGILGKILCPN 63 (467) Q Consensus 21 ~W~vk~GD~V~~gd~l~eiETDKat--~EV~A~~~G~i~~ilv~e 63 (467) .-+|++||.|+.||+|+| ||-. +-+.||.+|+|.+|.-.+ T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~TapvsG~V~aI~RG~ 83 (447) T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE 83 (447) T ss_pred CCEECCCCEEECCCEEEE---CCCCCCEEEECCCCCEEEEEECCC T ss_conf 415334772202653112---156898589456782588864465 No 149 >PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Probab=90.89 E-value=0.32 Score=28.10 Aligned_cols=150 Identities=12% Similarity=0.112 Sum_probs=63.3 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCC---CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 777868989982378851326975899943777721---122223321-2344222332233322233221000000112 Q gi|254780673|r 50 SIDEGILGKILCPNGTKNVKVNTPIAAILQEGETAL---DIDKMLLEK-PDVAISPSSKNTTLVFSNEDNDKVDHQKSKN 125 (467) Q Consensus 50 A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege~a~---~~~~~~a~~-~~aa~aaa~~~~s~~~~~a~~~a~~~~~a~~ 125 (467) +-.+|+|.++++++|| .|..|++|+.+.++-...+ ..+.....- .++...-+....-..- ...+|.+...+.+. T Consensus 12 ~m~eg~i~~W~~~~Gd-~V~~g~~l~eVeTDKa~~ei~a~~~G~l~~i~~~~G~~v~VG~~ia~i-~~asP~ar~lA~e~ 89 (324) T PRK11856 12 GMTEGEIVEWLVKEGD-TVKKGDPLAEVETDKATVEVESPVAGTLRKILVEEGDVVPVGAPIAVI-VRASPLARKLAREL 89 (324) T ss_pred CCCEEEEEEEEECCCC-EECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEECCCCEEEEE-CCCCCHHHHHHHHC T ss_conf 9517999999908999-978999499998076668980688839989960897995799989994-46782445568772 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHH Q ss_conf 3333100000000000000122355443113650699932-434458866532364754081110116666278998999 Q gi|254780673|r 126 DIQDSSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGE-EVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGI 204 (467) Q Consensus 126 ~~~~~~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~ge-dv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~ 204 (467) ...-....++......+|.++.+.|.+.+..-|.+..+-+ |+.+ -..+.++....+-.+.-++...++-.|+ T Consensus 90 gidl~~i~gtG~~gr~~r~~ia~~m~~s~~~ip~~~~~~~vd~~~-------l~~~r~~~~~~~~~~~klt~~~~~ikA~ 162 (324) T PRK11856 90 GVDLATVRGTGPGGRGLRKAIAKRMVNSKFNIPHFTLTDEVDATD-------LLALRKSLKKAAVEGGKLTVLAFLVKAV 162 (324) T ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEHHH-------HHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 999766778999986258999999887730398299999875799-------9999999765430488768679999999 Q ss_pred HHHH Q ss_conf 9887 Q gi|254780673|r 205 GASF 208 (467) Q Consensus 205 G~A~ 208 (467) ..|+ T Consensus 163 ~~AL 166 (324) T PRK11856 163 ADAL 166 (324) T ss_pred HHHH T ss_conf 9997 No 150 >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport. Probab=90.82 E-value=0.28 Score=28.56 Aligned_cols=62 Identities=23% Similarity=0.421 Sum_probs=42.1 Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEC--CCC-----CCCCC-CCCCCCH--------HHHCCCCCEECCCCCH----HH Q ss_conf 000000122355443113650699932--434-----45886-6532364--------7540811101166662----78 Q gi|254780673|r 139 SITVREALRDAIAEEMRRDKDVFIMGE--EVA-----EYQGA-YKVTQGL--------LQEFGCERVIDTPITE----HG 198 (467) Q Consensus 139 ~~TvRea~~~a~~e~m~~d~~~~~~ge--dv~-----~~~g~-f~~t~gl--------~~~fg~~R~~d~pi~E----~~ 198 (467) -+++|+|..--+|-+|+.+..+=++-+ +|| -|||| |-+..-| +.++ .+|+=||||.= || T Consensus 3 Dv~LRDaHQSL~ATRmRteDMLPi~~~LD~vGfwSLEvWGGATFDaC~RFL~EDPW~RLR~l-k~~~pnT~L~MLLRGQN 81 (616) T TIGR01108 3 DVVLRDAHQSLIATRMRTEDMLPILEKLDDVGFWSLEVWGGATFDACIRFLNEDPWERLREL-KKALPNTKLQMLLRGQN 81 (616) T ss_pred EEEECCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHH-HHHCCCCCHHHHHCCCC T ss_conf 01352067766753057313689998750249556520244105578442488855899999-97357875123420454 Q ss_pred HHH Q ss_conf 998 Q gi|254780673|r 199 FAG 201 (467) Q Consensus 199 ~~G 201 (467) ++| T Consensus 82 LlG 84 (616) T TIGR01108 82 LLG 84 (616) T ss_pred CCC T ss_conf 234 No 151 >KOG3373 consensus Probab=90.72 E-value=0.19 Score=29.79 Aligned_cols=37 Identities=30% Similarity=0.259 Sum_probs=20.6 Q ss_pred CCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEE Q ss_conf 7897625898599995375333431777868989982 Q gi|254780673|r 25 NEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILC 61 (467) Q Consensus 25 k~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv 61 (467) .+|-.|+++|.+.-+|+=|+.-||-+|.+|.|.+|.- T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe 125 (172) T KOG3373 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINE 125 (172) T ss_pred CCCCCCCCCCCEEEEEEHHHHHHHCCCCCCEEEEECC T ss_conf 8897223676011442013456530767752788245 No 152 >cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Probab=90.47 E-value=0.32 Score=28.14 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=25.2 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 7778689899823788513269758999437 Q gi|254780673|r 50 SIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 50 A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) +..+|+|.++++++|+ .|..|++|+.+.++ T Consensus 11 ~~~eg~i~~w~v~~Gd-~V~~gd~l~~vEt~ 40 (74) T cd06849 11 SMTEGTIVEWLVKEGD-SVEEGDVLAEVETD 40 (74) T ss_pred CCCEEEEEEEEECCCC-EECCCCEEEEEECC T ss_conf 8506999999927989-99789999999858 No 153 >TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds. EmrB encodes a highly hydrophobic 56.2-kDa peptide, with 14 potential alpha-helices to span the inner membrane. EmrA encodes a putative 42.7-kDa peptide containing a single hydrophobic domain and a large C-terminal hydrophilic domain.; GO: 0015238 drug transporter activity, 0006855 multidrug transport, 0009276 1-2nm peptidoglycan-based cell wall. Probab=90.04 E-value=0.4 Score=27.43 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=29.8 Q ss_pred EEEEEC-CCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 334317-778689899823788513269758999437 Q gi|254780673|r 45 VMEVES-IDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 45 t~EV~A-~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) .+.|-| ..+|.|.++.+.++ +.|.-|+.|+.|+.. T Consensus 42 ~~~v~sF~VsG~v~~v~~~d~-d~Vk~GD~Lv~LD~t 77 (379) T TIGR00998 42 QLQVSSFQVSGSVIEVNVDDT-DYVKQGDVLVRLDPT 77 (379) T ss_pred CEEEEEEEEEEEEEEEEECCC-CCCEECCEEEEECCC T ss_conf 302324657324899974378-842031156676771 No 154 >pfam00364 Biotin_lipoyl Biotin-requiring enzyme. This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the model may not recognize the Glycine cleavage system H proteins. Probab=89.71 E-value=0.41 Score=27.39 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=18.4 Q ss_pred CCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 8689899823788513269758999437 Q gi|254780673|r 53 EGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 53 ~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) +|++ ++++++| |.|..|++|+.+.+. T Consensus 14 ~~~~-~w~v~~G-d~V~~g~~l~~iEt~ 39 (73) T pfam00364 14 EGTA-EWLVKVG-DKVKAGQVLCEVEAM 39 (73) T ss_pred ECCE-EEEECCC-CEECCCCEEEEEEEC T ss_conf 2348-4865898-999289989999966 No 155 >PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed Probab=89.10 E-value=0.61 Score=26.15 Aligned_cols=29 Identities=21% Similarity=0.511 Sum_probs=25.8 Q ss_pred CEEEEEEEECCCCCEECCCCEEEEEECCC Q ss_conf 15789877417897625898599995375 Q gi|254780673|r 15 TEGNIAKWKKNEGDLIKQGDIIYEVETDK 43 (467) Q Consensus 15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDK 43 (467) ..|+|.++++++||.|++||+|++|+..- T Consensus 70 v~G~v~~v~v~~Gd~V~kGq~La~lD~~~ 98 (385) T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAP 98 (385) T ss_pred CCEEEEEEEECCCCEECCCCEEEEECCHH T ss_conf 44699999807999873898899985346 No 156 >cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. Probab=88.83 E-value=1.9 Score=22.74 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=40.6 Q ss_pred ECCCCCEECCCCEEEEE-ECCCCEEE--EECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC Q ss_conf 41789762589859999-53753334--31777868989982378851326975899943777 Q gi|254780673|r 23 KKNEGDLIKQGDIIYEV-ETDKAVME--VESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE 82 (467) Q Consensus 23 ~vk~GD~V~~gd~l~ei-ETDKat~E--V~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege 82 (467) .+|+||.|..||+|-+| ||+...-- ||--..|.|..+ +..| + ..+.++++.++.+|. T Consensus 54 ~v~~Gd~V~~GDi~G~V~E~~~i~HkImvpp~~~G~v~~i-~~~g-~-y~v~~~~~~~~~~g~ 113 (369) T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAG-D-YTVDDVILEVEFDGK 113 (369) T ss_pred CCCCCCEECCCCEEEEEECCCCEEEEEECCCCCCEEEEEE-ECCC-C-CEEEEEEEEECCCCC T ss_conf 2677999627867999855783677786489873799999-1589-8-524656999706898 No 157 >TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family; InterPro: IPR014315 Members of this protein are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. (strain PCC 7120) is partially characterised as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. which has seven members.. Probab=88.50 E-value=0.18 Score=29.92 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=29.5 Q ss_pred EEEECCCC-----CEEEEEE-ECCCCCCCCCCCEEEEEECCCCCCCC Q ss_conf 34317778-----6898998-23788513269758999437777211 Q gi|254780673|r 46 MEVESIDE-----GILGKIL-CPNGTKNVKVNTPIAAILQEGETALD 86 (467) Q Consensus 46 ~EV~A~~~-----G~i~~il-v~eG~e~V~VG~~ia~i~~ege~a~~ 86 (467) +.|-+|-+ -.|.+|| |.+|| .|..|++||+|+.-.+-..+ T Consensus 14 ~~v~aP~~Gf~g~~Ri~~LlPV~eGD-~V~~Gq~lA~Ld~~~~r~a~ 59 (363) T TIGR02971 14 VAVAAPSSGFAGTDRIKKLLPVAEGD-RVKAGQVLAELDSRPERRAE 59 (363) T ss_pred EEEECCCCCCCCCCHHHHHCCCCCCC-CCCCCCEEEEECCCHHHHHH T ss_conf 88414788887753155506778887-01157536764570579999 No 158 >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family; InterPro: IPR010129 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Type I secretion is an ABC transporter that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C terminus of the transported protein. This entry represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This entry selects a group of sequences closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.; GO: 0015031 protein transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=88.15 E-value=0.32 Score=28.15 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=28.9 Q ss_pred CCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEE Q ss_conf 81157898774178976258985999953753334 Q gi|254780673|r 13 TMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVME 47 (467) Q Consensus 13 sm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~E 47 (467) +.+-|.|.+.+|++||.|++||+|+++++=.+--+ T Consensus 48 hlegGi~~~I~V~EG~~V~~Gq~L~~Ld~t~~~A~ 82 (434) T TIGR01843 48 HLEGGIVREILVREGDRVKAGQVLVELDATSVEAD 82 (434) T ss_pred CCCCCEEEEEEECCCCEECCCCCCEEECHHHHHHH T ss_conf 68653441355225864203770135413578999 No 159 >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Probab=88.04 E-value=1.6 Score=23.19 Aligned_cols=110 Identities=19% Similarity=0.153 Sum_probs=60.8 Q ss_pred CCCCCEECCCC-CH-HHHHHHHHHHHHCC-CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC Q ss_conf 08111011666-62-78998999988718-86445666-66789999999998788674211776788879983024457 Q gi|254780673|r 184 FGCERVIDTPI-TE-HGFAGIGIGASFAG-LKPIVEFM-TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAA 259 (467) Q Consensus 184 fg~~R~~d~pi-~E-~~~~G~a~G~A~~G-~~Piv~~~-~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~ 259 (467) ..|.+++..+- +- ..-++.|+|++++- -|+++.+. ...|.+.. |-+..+. +.++|+++..-.-.++ T Consensus 34 ~~~~~~~~~~~~g~mG~~~p~AiGa~~a~p~~~vv~i~GDG~f~~~~--~el~ta~--------~~~l~i~~iv~nN~~~ 103 (168) T cd00568 34 RRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMMTG--QELATAV--------RYGLPVIVVVFNNGGY 103 (168) T ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECC--HHHHHHH--------HCCCCEEEEEEECCHH T ss_conf 89995982898753777999999999878998399997797421131--7664565--------3188426999977613 Q ss_pred CCCHHHH-----------------HHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE Q ss_conf 6444433-----------------2168876322031386652210001055565413783476 Q gi|254780673|r 260 RVAAQHS-----------------QCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF 306 (467) Q Consensus 260 ~~g~~Hs-----------------~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~ 306 (467) |..+. -++..+.... |++.+...++.|.+..|+.+++.+.|+++ T Consensus 104 --~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~el~~al~~a~~~~~p~li 164 (168) T cd00568 104 --GTIRMHQEAFYGGRVSGTDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALI 164 (168) T ss_pred --HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHCCCCEEE T ss_conf --67799998502898765658888778999974-98699989999999999999838997899 No 160 >PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated Probab=88.02 E-value=2.1 Score=22.39 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=5.8 Q ss_pred CHHHHHHHHHHHH Q ss_conf 9899999999985 Q gi|254780673|r 448 NVDEIIESVESIC 460 (467) Q Consensus 448 ~~~~I~~av~~v~ 460 (467) +.+++-+++++-. T Consensus 504 ~~~eL~~al~~a~ 516 (548) T PRK07449 504 TWAELEEALDDAL 516 (548) T ss_pred CHHHHHHHHHHHH T ss_conf 9999999999998 No 161 >PRK09859 multidrug efflux system protein MdtE; Provisional Probab=87.89 E-value=0.82 Score=25.25 Aligned_cols=30 Identities=33% Similarity=0.529 Sum_probs=26.4 Q ss_pred CEEEEEEEECCCCCEECCCCEEEEEECCCC Q ss_conf 157898774178976258985999953753 Q gi|254780673|r 15 TEGNIAKWKKNEGDLIKQGDIIYEVETDKA 44 (467) Q Consensus 15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDKa 44 (467) ..|.|.++++++||.|++||+|++|+..-. T Consensus 68 VsG~v~~~~v~~Gd~VkkGq~La~LD~~~~ 97 (385) T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPL 97 (385) T ss_pred CCEEEEEEECCCCCEEECCCEEEEECCHHH T ss_conf 562999998389998848988998284799 No 162 >PRK05035 electron transport complex protein RnfC; Provisional Probab=87.89 E-value=0.59 Score=26.25 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=37.9 Q ss_pred CCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE Q ss_conf 811578987741789762589859999537533343177786898998 Q gi|254780673|r 13 TMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL 60 (467) Q Consensus 13 sm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~il 60 (467) +..-|.-++-+|++||.|..||.|.+-+ .-.+.-|-||.+|+|..|- T Consensus 48 ~QHiGap~~p~VkvGD~VlkGQ~I~~~~-g~vsapVHAptSGtV~aIe 94 (725) T PRK05035 48 KQHIGAEGELLVSVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVTAIE 94 (725) T ss_pred CCCCCCCCCCCCCCCCEECCCCEEEECC-CCEEEEEECCCCEEEEEEE T ss_conf 7779987714147899976888745469-8458605679982998750 No 163 >TIGR02645 ARCH_P_rylase putative thymidine phosphorylase; InterPro: IPR013466 Proteins in this entry are closely related to characterised examples of thymidine phosphorylase (2.4.2.4 from EC) and pyrimidine nucleoside phosphorylase (2.4.2.2 from EC). Most examples are found in the archaea, but other examples are found in bacteria such as Legionella pneumophila (strain Paris) and Rhodopseudomonas palustris CGA009.; GO: 0009032 thymidine phosphorylase activity. Probab=87.78 E-value=0.4 Score=27.41 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=45.2 Q ss_pred CCCCE-EEEHH-----HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH Q ss_conf 68745-86025-----7888888887531004675279733006857999999999871989999578876767899999 Q gi|254780673|r 338 GSDVT-IISFG-----IGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIAN 411 (467) Q Consensus 338 G~dit-ii~~G-----~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~ 411 (467) |..++ ++||| +.+.-||||.+-|+--. -..=-|. +++-+|+.--+.||=.. +....|-|-+++. T Consensus 314 G~~VE~~~TyG~QPIGr~iGPaLEAkeal~vL~-------~~~~aP~--sL~EKSl~LAg~LLEmg-G~~~~G~Gk~~A~ 383 (499) T TIGR02645 314 GVTVEVAITYGSQPIGRGIGPALEAKEALAVLE-------SSKEAPR--SLVEKSLALAGILLEMG-GAAPRGAGKELAR 383 (499) T ss_pred CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHC-------CCCCCCH--HHHHHHHHHHHHHHHCC-CCCCCCCCHHHHH T ss_conf 907999995188786677673366899999834-------7866773--58999999987885427-8788877589999 Q ss_pred HHHHHH Q ss_conf 999967 Q gi|254780673|r 412 QVQRKV 417 (467) Q Consensus 412 ~i~e~~ 417 (467) -+-+.+ T Consensus 384 e~L~SG 389 (499) T TIGR02645 384 ELLDSG 389 (499) T ss_pred HHHHHH T ss_conf 876547 No 164 >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional Probab=86.90 E-value=2.4 Score=21.95 Aligned_cols=11 Identities=45% Similarity=0.730 Sum_probs=7.4 Q ss_pred HHHHCCCEEEE Q ss_conf 63220313866 Q gi|254780673|r 273 YSHVPGLKVVI 283 (467) Q Consensus 273 ~~~iPgl~V~~ 283 (467) |+.-|||..++ T Consensus 195 l~~pPGLs~v~ 205 (368) T PRK13479 195 IEGVPGFGFVI 205 (368) T ss_pred CCCCCCCEEEE T ss_conf 45799710122 No 165 >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. Probab=86.87 E-value=2.1 Score=22.40 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=21.6 Q ss_pred CCEEEEEECCHHCCCHHHHHHHCCCCEEE Q ss_conf 31386652210001055565413783476 Q gi|254780673|r 278 GLKVVIPYTASDAKGLLKAAIRDPNPVIF 306 (467) Q Consensus 278 gl~V~~P~~~~d~~~ll~~ai~~~~Pvi~ 306 (467) |.+-....++.|++..|+.+++.++|++. T Consensus 146 G~~~~~v~~~~el~~al~~a~~~~~p~vI 174 (178) T cd02002 146 GVEAERVETPEELDEALREALAEGGPALI 174 (178) T ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCEEE T ss_conf 99489978999999999999838996899 No 166 >PRK11269 glyoxylate carboligase; Provisional Probab=86.82 E-value=2.4 Score=21.92 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=6.9 Q ss_pred CHHHHHHHHHHHH Q ss_conf 9899999999985 Q gi|254780673|r 448 NVDEIIESVESIC 460 (467) Q Consensus 448 ~~~~I~~av~~v~ 460 (467) +.+++-.|.++-+ T Consensus 527 ~~~el~~Al~~Al 539 (591) T PRK11269 527 KPEDIAPAFEQAK 539 (591) T ss_pred CHHHHHHHHHHHH T ss_conf 9999999999997 No 167 >pfam02749 QRPTase_N Quinolinate phosphoribosyl transferase, N-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The N-terminal domain has an alpha/beta hammerhead fold. Probab=86.57 E-value=0.81 Score=25.31 Aligned_cols=23 Identities=30% Similarity=0.773 Sum_probs=19.3 Q ss_pred EEEECCCCCEECCCCEEEEEECC Q ss_conf 87741789762589859999537 Q gi|254780673|r 20 AKWKKNEGDLIKQGDIIYEVETD 42 (467) Q Consensus 20 ~~W~vk~GD~V~~gd~l~eiETD 42 (467) ++|++++||.|+.||+|++++-+ T Consensus 47 v~~~~~dG~~v~~g~~i~~i~G~ 69 (88) T pfam02749 47 VEWLVKDGERVEAGDVILEIEGP 69 (88) T ss_pred EEEECCCCCEECCCCEEEEEEEC T ss_conf 99996889991799999999988 No 168 >TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; InterPro: IPR008703 This family consists of several bacterial Na^+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na^+-translocating NADH: ubiquinone oxidoreductase (Na^+-NQR) generates an electrochemical Na^+ potential driven by aerobic respiration .; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006814 sodium ion transport. Probab=86.41 E-value=0.37 Score=27.68 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=45.9 Q ss_pred EEEEEEECCCCCEECCCCEEEEEECCCCEEE--EECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC Q ss_conf 7898774178976258985999953753334--31777868989982378851326975899943777721122223321 Q gi|254780673|r 17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVME--VESIDEGILGKILCPNGTKNVKVNTPIAAILQEGETALDIDKMLLEK 94 (467) Q Consensus 17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~E--V~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege~a~~~~~~~a~~ 94 (467) |-.-+-.|++||.|+.|++|+| ||.-=+ +.||.+|+|.+|. =| ++-.+-.+ +|..+|++....+...+.. T Consensus 38 g~~p~~~v~~GD~V~~G~~L~~---~K~~P~v~fTsPvsG~V~ai~--RG-~KR~Llsv--vi~~~gDe~~~~~~~~~~~ 109 (466) T TIGR01936 38 GLRPKMKVRPGDKVKAGQVLFE---DKKNPGVKFTSPVSGEVVAIN--RG-AKRVLLSV--VIKKDGDEQGEFAKFPAYD 109 (466) T ss_pred CCCCEEEEEECCEEEECCHHHH---HCCCCCCEEECCCCCEEEEEE--CC-CCCEEEEE--EEECCCCCCCCCCEECCCC T ss_conf 8665067700770100222333---026898568617775699974--18-97246478--8813788653002000346 Q ss_pred C Q ss_conf 2 Q gi|254780673|r 95 P 95 (467) Q Consensus 95 ~ 95 (467) . T Consensus 110 L 110 (466) T TIGR01936 110 L 110 (466) T ss_pred H T ss_conf 0 No 169 >pfam09891 DUF2118 Uncharacterized protein conserved in archaea (DUF2118). This domain, found in various hypothetical archaeal proteins, has no known function. Probab=85.93 E-value=2.7 Score=21.62 Aligned_cols=45 Identities=33% Similarity=0.313 Sum_probs=36.1 Q ss_pred CEEEEEEEECCCCCEECCCCEEEEEECCCCEEE-EECCCCCEEEEE Q ss_conf 157898774178976258985999953753334-317778689899 Q gi|254780673|r 15 TEGNIAKWKKNEGDLIKQGDIIYEVETDKAVME-VESIDEGILGKI 59 (467) Q Consensus 15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~E-V~A~~~G~i~~i 59 (467) .||-.+--...+||.|.+||.++-+.|-|=.+- +.||.+|+|.=+ T Consensus 86 veGy~v~~i~~~G~rV~~g~~lA~v~T~KGevR~~~spv~G~Vv~i 131 (149) T pfam09891 86 AEGYKVYPIVDEGDRVLKGDRLAAVTTRKGEVRYVRSPVEGTVVFI 131 (149) T ss_pred ECCEEEEEECCCCCEEECCCEEEEEEECCCEEEEECCCCCEEEEEE T ss_conf 0746998872656477218648999816841799449976899999 No 170 >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional Probab=85.82 E-value=2.7 Score=21.58 Aligned_cols=308 Identities=17% Similarity=0.186 Sum_probs=156.9 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEECC----CCCCCCC----C----CCCCCHHHHCCCCCEECCCCCHHHHHHHH Q ss_conf 0000000001223554431136506999324----3445886----6----53236475408111011666627899899 Q gi|254780673|r 136 PTSSITVREALRDAIAEEMRRDKDVFIMGEE----VAEYQGA----Y----KVTQGLLQEFGCERVIDTPITEHGFAGIG 203 (467) Q Consensus 136 ~~~~~TvRea~~~a~~e~m~~d~~~~~~ged----v~~~~g~----f----~~t~gl~~~fg~~R~~d~pi~E~~~~G~a 203 (467) ...-+|=-|||-+.+....++|... |.+ |..|.|. | .-.+.++++. +=+|--++.|.-....- T Consensus 27 G~v~ltG~QALVRl~l~Q~~~D~~~---GlnTagfvSGYrGSPLg~~D~~l~~a~~~L~~~--~i~f~pg~NEdLaATav 101 (1186) T PRK13029 27 GRIYISGTQALVRLPLLQRARDRRA---GLNTAGFISGYRGSPLGALDQALWKAKKHLAAA--DVVFQPGVNEELAATAV 101 (1186) T ss_pred CCEEEEHHHHHHHHHHHHHHHHHHC---CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEECCCCCHHHHHHHH T ss_conf 8687534189999999888899976---987013135799998228899999988578763--95762665889999988 Q ss_pred HHHHHCCCCCHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH Q ss_conf 9988718864456666-67-------899999999987886742117767888799830244576444433216887632 Q gi|254780673|r 204 IGASFAGLKPIVEFMT-FN-------FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSH 275 (467) Q Consensus 204 ~G~A~~G~~Piv~~~~-~~-------f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~ 275 (467) -|--+.++.|-..+-- |. =.-|+.|-+.|-- +.|..-.-.|+.-.-.-.+......-+||-.+ |.+ T Consensus 102 wGsQq~~~~~~~~~dGVfg~WYGKgPGvDRsgDa~rHaN-----~~Gts~~GGvl~~~GDDh~~kSSt~~hqSe~~-~~~ 175 (1186) T PRK13029 102 WGSQQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHAN-----LAGTSPLGGVLVLAGDDHGAKSSSVAHQSDHT-FIA 175 (1186) T ss_pred HHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCC-----CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH-HHH T ss_conf 744002458998765458884277888642276876431-----13779989989998359997037675560999-987 Q ss_pred HCCCEEEEEECCHHCCCHHHH--HH-HC---------------CCCEEEEC-CC--CCCCCCCCCCCC------------ Q ss_conf 203138665221000105556--54-13---------------78347640-21--233333453346------------ Q gi|254780673|r 276 VPGLKVVIPYTASDAKGLLKA--AI-RD---------------PNPVIFLE-NE--ILYGSSFEVPMV------------ 322 (467) Q Consensus 276 iPgl~V~~P~~~~d~~~ll~~--ai-~~---------------~~Pvi~le-~~--~ly~~~~~~p~~------------ 322 (467) . +|-|++|++.+|...+=.. ++ |+ -.-++-+. .+ +.....++.|.. T Consensus 176 ~-~iPvl~Pa~vqe~ld~Gl~g~alSR~sG~Wvg~K~v~~~ve~~~sv~~~~~r~~~~~p~~~~~p~~gl~~r~~d~~~~ 254 (1186) T PRK13029 176 W-GIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLA 254 (1186) T ss_pred C-CCCEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH T ss_conf 5-997437999899999999999998673857079986200011469965756455559864568998732478998358 Q ss_pred C-----CEEC----------CCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHC-----CCCCEEEEECCCCCCCCHHH Q ss_conf 6-----3121----------44311444316874586025788888888753100-----46752797330068579999 Q gi|254780673|r 323 D-----DLVI----------PIGRARIHRQGSDVTIISFGIGMTYATKAAIELEK-----NGIDAELIDLRTIRPMDWQT 382 (467) Q Consensus 323 ~-----~~~~----------p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~-----~gi~~~vid~r~l~Pld~~~ 382 (467) . ++.+ +|.+..+-.+...+-||+.|.......+|-..|-- +.+...+.-+--.+|||.+. T Consensus 255 qe~r~~~~kl~aa~af~ran~ld~~~~~~~~~r~Giv~~Gk~~~dv~~Al~~lGi~~~~~~~~gi~i~Kvgm~wPLe~~~ 334 (1186) T PRK13029 255 QEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLLKVGCVWPLDPQS 334 (1186) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCHHH T ss_conf 99999999999999999868866022059988579994584489999999983999789986595699824787888799 Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEECCCCC--------CCCCCHH-HHHHCCCCHHHH Q ss_conf 999998719899995788767678999999999677642-898299717778--------8888966-765608998999 Q gi|254780673|r 383 IFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYL-DAPILTITGRDV--------PMPYAAN-LEKLALPNVDEI 452 (467) Q Consensus 383 i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L-~~p~~ri~~~d~--------p~P~~~~-le~~~~p~~~~I 452 (467) +.+-++--..++||||-. +-|-.+|.+..|++- +..|+.++-.|. ..|.+.. |-...-.+...| T Consensus 335 ~~~Fa~gl~eilVVEEKr------~~iE~q~k~~ly~~~~~~rP~v~GK~D~~~~~~~~~~~~~G~~llp~~geL~~~~i 408 (1186) T PRK13029 335 VREFAQGLEEVLVVEEKR------AVIEYQLKEELYNWREDVRPAIFGKFDHRDGAGGEWSVPAGRWLLPAHAELSPALI 408 (1186) T ss_pred HHHHHHCCCEEEEEEECH------HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 999984788799997256------77999999996078877897478424577765555567778826786678699999 Q ss_pred HHHHHHHHC Q ss_conf 999999850 Q gi|254780673|r 453 IESVESICY 461 (467) Q Consensus 453 ~~av~~v~~ 461 (467) ..++-+.+. T Consensus 409 a~~l~~rl~ 417 (1186) T PRK13029 409 AKAIARRLA 417 (1186) T ss_pred HHHHHHHHH T ss_conf 999999999 No 171 >TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane. Probab=85.56 E-value=0.77 Score=25.45 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=33.8 Q ss_pred EEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE Q ss_conf 78987741789762589859999537533343177786898998 Q gi|254780673|r 17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL 60 (467) Q Consensus 17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~il 60 (467) |.=++=.||+||.|-+||.|+.=+. =.+.-|=||.||+|.+|- T Consensus 40 G~p~~p~V~~GD~VLkGq~Ia~~~G-~~sap~HaPtSG~v~~I~ 82 (444) T TIGR01945 40 GAPAEPIVKVGDKVLKGQLIAKADG-FVSAPIHAPTSGTVVAIE 82 (444) T ss_pred CCCCCCEECCCCEEECCCEECCCCC-EEEEEEECCCCCEEEEEE T ss_conf 8777730027865206611006774-078700078110688741 No 172 >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. Probab=85.14 E-value=2.7 Score=21.60 Aligned_cols=114 Identities=17% Similarity=0.086 Sum_probs=52.3 Q ss_pred HHHCCCCCEECCCC--CHHHHHHHHHHHHHCC-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC Q ss_conf 75408111011666--6278998999988718-864456666-6789999999998788674211776788879983024 Q gi|254780673|r 181 LQEFGCERVIDTPI--TEHGFAGIGIGASFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNG 256 (467) Q Consensus 181 ~~~fg~~R~~d~pi--~E~~~~G~a~G~A~~G-~~Piv~~~~-~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G 256 (467) +.-..|.|++..+- +=..-++.|+|++++. -||++.+.- ..|.|...+ +..++ +.++|+++..-+- T Consensus 38 ~~~~~p~~~~~~~~~g~mG~glpaAiGAk~A~Pdr~Vv~i~GDGsf~m~~~E--L~Ta~--------r~~lpv~~vV~NN 107 (196) T cd02013 38 LRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMSMME--IMTAV--------RHKLPVTAVVFRN 107 (196) T ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHH--HHHHH--------HHCCCEEEEEEEC T ss_conf 6758999598069866476799999999972789749999579734214489--99999--------9788906999978 Q ss_pred CCCCCCHH---------------HHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH---CCCCEE Q ss_conf 45764444---------------33216887632203138665221000105556541---378347 Q gi|254780673|r 257 AAARVAAQ---------------HSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR---DPNPVI 305 (467) Q Consensus 257 ~~~~~g~~---------------Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~---~~~Pvi 305 (467) .+++.--+ +.-+|..+-... |..-..-.++.|+...|+.|+. +..|++ T Consensus 108 ~~~g~i~~~q~~~~~~~~~~~~~~~~df~~~A~a~-G~~g~~V~~~~el~~al~~Ala~~~~~~P~l 173 (196) T cd02013 108 RQWGAEKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTV 173 (196) T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHHCCCCCEEE T ss_conf 05789999999870897424536999868999975-9878997899999999999998567998699 No 173 >pfam07831 PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain. This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as E. coli thymidine phosphorylase (TP). The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer. Probab=85.10 E-value=0.81 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=21.7 Q ss_pred CCEEEEEEEECCCCCEECCCCEEEEEECCC Q ss_conf 115789877417897625898599995375 Q gi|254780673|r 14 MTEGNIAKWKKNEGDLIKQGDIIYEVETDK 43 (467) Q Consensus 14 m~eG~i~~W~vk~GD~V~~gd~l~eiETDK 43 (467) +.-+.=..+++|.||.|++||+|++|=++. T Consensus 28 iD~~vGi~l~~k~Gd~V~~g~pl~~i~~~~ 57 (75) T pfam07831 28 IDPGAGIYLHKKVGDKVKKGDPLATIYAND 57 (75) T ss_pred CCHHHHHHEECCCCCEECCCCEEEEEECCC T ss_conf 471122540246899966999399997799 No 174 >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism. Probab=85.02 E-value=3 Score=21.32 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=25.6 Q ss_pred HHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE Q ss_conf 168876322031386652210001055565413783476 Q gi|254780673|r 268 CYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF 306 (467) Q Consensus 268 ~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~ 306 (467) +|..+-... |.+-.--.++.|+...|+.|+..++|++. T Consensus 142 Df~~~A~a~-G~~g~~V~~~~eL~~Al~~Al~~~gP~vI 179 (205) T cd02003 142 DFAANARSL-GARVEKVKTIEELKAALAKAKASDRTTVI 179 (205) T ss_pred CHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHCCCCEEE T ss_conf 899999874-97089938889999999999968996999 No 175 >TIGR01730 RND_mfp efflux transporter, RND family, MFP subunit; InterPro: IPR006143 Gram-negative bacteria produce a number of proteins which are secreted into the growth medium by a mechanism that does not require a cleaved N-terminal signal sequence. These proteins, while having different functions, require the help of two or more proteins for their secretion across the cell envelope. These secretion proteins include members belonging to the ABC transporter family (see the relevant entry IPR003439 from INTERPRO) and a protein belonging to a family which includes the following members , , , , : Hemolysin secretion protein D from Escherichia coli. Lactococcin A secretion protein lcnD from Lactococcus lactis. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) cyaD from Bordetella pertussis. Colicin Vsecretion protein cvaA from Escherichia coli. Proteases secretion protein prtE from Erwinia chrysanthemi. Alkaline protease secretion protein aprE from Pseudomonas aeruginosa. Multidrug resistance protein A from Escherichia coli. The secretion proteins are evolutionary related and consist of from 390 to 480 amino acid residues. They seem to be anchored in the inner membrane by a N-terminal transmembrane region. Their exact role in the secretion process is not yet known.; GO: 0008565 protein transporter activity, 0009306 protein secretion, 0016020 membrane. Probab=84.99 E-value=2.4 Score=22.03 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=29.7 Q ss_pred EEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCC Q ss_conf 3343177786898998237885132697589994377 Q gi|254780673|r 45 VMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEG 81 (467) Q Consensus 45 t~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~eg 81 (467) ..++.....|.+..+.+.+| +.|.-|+.++.++... T Consensus 26 ~~~~~~~~~g~~~~~~~~~g-~~~~~g~~~~~~~~~~ 61 (333) T TIGR01730 26 EAELAPEVAGKLTKLLVREG-QKVKKGQLLARLDDDD 61 (333) T ss_pred HHHHHHHCCCEEEEEECCCC-CCCCCCCEEEEECCHH T ss_conf 01001110440022110036-4201362457655457 No 176 >PRK09016 quinolinate phosphoribosyltransferase; Validated Probab=84.64 E-value=0.95 Score=24.79 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=27.9 Q ss_pred CCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 685799999999987198999957887676789999999996776 Q gi|254780673|r 375 IRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD 419 (467) Q Consensus 375 l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~ 419 (467) |--|+.+.+.+.++..+.-+.+|= +||+.-+=+..+.+-+-+ T Consensus 234 LDN~s~~~~k~av~~~~~~~~lEa---SGgI~l~ni~~yA~tGVD 275 (296) T PRK09016 234 LDNFTTEQMREAVKRTNGKAALEV---SGNVTLETLREFAETGVD 275 (296) T ss_pred ECCCCHHHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHCCCC T ss_conf 889899999999997479679998---789989999999972999 No 177 >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process. Probab=84.51 E-value=1.3 Score=23.93 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=28.7 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCE---EEEECCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 279733006857999999999871989---999578876767899999999967764 Q gi|254780673|r 367 AELIDLRTIRPMDWQTIFESVKKTGRL---VTVEEGYPQSSVGSTIANQVQRKVFDY 420 (467) Q Consensus 367 ~~vid~r~l~Pld~~~i~~sv~kt~~~---i~vee~~~~gg~g~~i~~~i~e~~f~~ 420 (467) ++||=|=..+| +.|.+.|++.+.- +.+|= +||+.-+=++...+.+-|| T Consensus 207 ADiImLDNm~p---~~~~~av~~~~~~~p~~~~Ea---SGGitl~n~~~ya~~gVD~ 257 (276) T TIGR00078 207 ADIIMLDNMKP---EEIKEAVELLKGRNPNVLVEA---SGGITLDNIEEYAETGVDV 257 (276) T ss_pred CCEEECCCCCH---HHHHHHHHHHHHCCCEEEEEE---ECCCCHHHHHHHHHCCCCE T ss_conf 95998069894---799999999970299089998---3699878999984089758 No 178 >TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family; InterPro: IPR014315 Members of this protein are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. (strain PCC 7120) is partially characterised as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. which has seven members.. Probab=84.41 E-value=0.6 Score=26.22 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=28.9 Q ss_pred CCCCCC--C-EEEEEEEE-CCCCCEECCCCEEEEEEC-CCCEEEE Q ss_conf 888881--1-57898774-178976258985999953-7533343 Q gi|254780673|r 9 SLSPTM--T-EGNIAKWK-KNEGDLIKQGDIIYEVET-DKAVMEV 48 (467) Q Consensus 9 ~lgesm--~-eG~i~~W~-vk~GD~V~~gd~l~eiET-DKat~EV 48 (467) -.++++ . .-.|.+.| |++||.|+.|++|+++++ ++...|+ T Consensus 16 v~aP~~Gf~g~~Ri~~LlPV~eGD~V~~Gq~lA~Ld~~~~r~a~l 60 (363) T TIGR02971 16 VAAPSSGFAGTDRIKKLLPVAEGDRVKAGQVLAELDSRPERRAEL 60 (363) T ss_pred EECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHH T ss_conf 414788887753155506778887011575367645705799999 No 179 >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional Probab=84.30 E-value=1.3 Score=23.84 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=25.1 Q ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 85799999999987198999957887676789999999996776 Q gi|254780673|r 376 RPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD 419 (467) Q Consensus 376 ~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~ 419 (467) --|..+.+.+.++..+.=+.+|- .||+.-+=+..+.+-+-| T Consensus 226 DNms~~~~~~av~~~~~~~~lEa---SGgI~~~ni~~yA~tGVD 266 (288) T PRK06978 226 DNFTLDMMREAVRVTAGRAVLEV---SGGVNFDTVRAFAETGVD 266 (288) T ss_pred CCCCHHHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHCCCC T ss_conf 79999999999996479679999---899999999999966999 No 180 >PRK09824 beta-glucoside-specific PTS system components IIABC; Provisional Probab=83.14 E-value=1.9 Score=22.64 Aligned_cols=17 Identities=35% Similarity=0.304 Sum_probs=9.5 Q ss_pred CCCCEEEEECCCCCEEE Q ss_conf 37533343177786898 Q gi|254780673|r 41 TDKAVMEVESIDEGILG 57 (467) Q Consensus 41 TDKat~EV~A~~~G~i~ 57 (467) .+|+..|---.-+|++. T Consensus 35 ~skvd~~~lk~i~gV~g 51 (625) T PRK09824 35 ESKAQAEVLKKTPGIIM 51 (625) T ss_pred CCCCCHHHHHCCCCCEE T ss_conf 45118998957998128 No 181 >TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase; InterPro: IPR000053 Two highly similar activities are represented in this group: thymidine phosphorylase (TP, gene deoA, 2.4.2.4 from EC) and pyrimidine-nucleoside phosphorylase (PyNP, gene pdp, 2.4.2.2 from EC). Both are dimeric enzymes that function in the salvage pathway to catalyse the reversible phosphorolysis of pyrimidine nucleosides to the free base and sugar moieties. In the case of thymidine phosphorylase, thymidine (and to a lesser extent, 2'-deoxyuridine) is lysed to produce thymine (or uracil) and 2'-deoxyribose-1-phosphate. Pyrimidine-nucleoside phosphorylase performs the analogous reaction on thymidine (to produce the same products) and uridine (to produce uracil and ribose-1-phosphate). PyNP is typically the only pyrimidine nucleoside phosphorylase encoded by Gram positive bacteria, while eukaryotes and proteobacteria encode two: TP, and the unrelated uridine phosphorylase. In humans, TP was originally characterised as platelet-derived endothelial cell growth factor and gliostatin . Structurally, the enzymes are homodimers, each composed of a rigid all alpha-helix lobe and a mixed alpha-helix/beta-sheet lobe, which are connected by a flexible hinge , . Prior to substrate binding, the lobes are separated by a large cleft. A functional active site and subsequent catalysis occurs upon closing of the cleft. The active site, composed of a phosphate binding site and a (deoxy)ribonucleotide binding site within the cleft region, is highly conserved between the two enzymes of this group. Active site residues (Escherichia coli DeoA numbering) include the phosphate binding Lys84 and Ser86 (close to a glycine-rich loop), Ser113, and Thr123, and the pyrimidine nucleoside-binding Arg171, Ser186, and Lys190. Sequence comparison between the active site residues for both enzymes reveals only one difference , which has been proposed to partially mediate substrate specificity. In TP, position 111 is a methionine, while the analogous position in PyNP is lysine. It should be noted that the uncharacterised archaeal members of this family differ in a number of respects from either of the characterised activities. The residue at position 108 is lysine, indicating the activity might be PyNP-like (though the determinants of substrate specificity have not been fully elucidated). Position 171 is glutamate (negative charge side chain) rather than arginine (positive charge side chain). In addition, a large loop that may "lock in" the substrates within the active site is much smaller than in the characterised members. It is not clear what effect these and other differences have on activity and specificity.; GO: 0006206 pyrimidine base metabolic process. Probab=83.03 E-value=1.3 Score=23.80 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=27.6 Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCCC Q ss_conf 999999987198999957887676789999999-996776428982 Q gi|254780673|r 381 QTIFESVKKTGRLVTVEEGYPQSSVGSTIANQV-QRKVFDYLDAPI 425 (467) Q Consensus 381 ~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i-~e~~f~~L~~p~ 425 (467) ..+.+.-++.||=+++.=..-..=+|..|-..| .+++.+.|+..- T Consensus 218 ~~mv~~G~~~Grkv~a~lTdMn~PLG~a~GNa~EV~EA~~~L~G~~ 263 (425) T TIGR02644 218 KLMVEIGKGAGRKVVALLTDMNQPLGRAIGNALEVKEAVDFLKGEK 263 (425) T ss_pred HHHHHHHHHCCCEEEEEEECCCHHHHHHCCHHHHHHHHHHHHCCCC T ss_conf 9999999726987999972586068861011899999999865884 No 182 >PRK07092 benzoylformate decarboxylase; Reviewed Probab=82.85 E-value=3.6 Score=20.71 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC Q ss_conf 012235544311365-06999324344588665323647540811101166 Q gi|254780673|r 144 EALRDAIAEEMRRDK-DVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP 193 (467) Q Consensus 144 ea~~~a~~e~m~~d~-~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p 193 (467) +++.++.. .+.+-+ -+++.|..+.. -|+...-+.|.++.|- .|+-++ T Consensus 185 ~~l~~~~~-~L~~AkrPvii~G~g~~~-~~a~~~l~~lae~l~~-PV~~t~ 232 (521) T PRK07092 185 AALAALGD-ALDAARNPALVVGPAVDR-AGAWDDAVRLAERHRA-PVWVAP 232 (521) T ss_pred HHHHHHHH-HHHCCCCCEEEECCCCCC-CCHHHHHHHHHHHHCC-CEEEEC T ss_conf 99999999-997289978998767040-3549999999998699-778732 No 183 >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] Probab=82.73 E-value=1.5 Score=23.38 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=31.1 Q ss_pred EEEEECCCCCCCCHHHHHHHHHH--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC Q ss_conf 27973300685799999999987--19899995788767678999999999677642898299717778888 Q gi|254780673|r 367 AELIDLRTIRPMDWQTIFESVKK--TGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMP 436 (467) Q Consensus 367 ~~vid~r~l~Pld~~~i~~sv~k--t~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P 436 (467) +++|=|-. |..+.+.+.++. .+.-+.+|- +||+.-+=+....+-+-+ ..-++.+-+..| T Consensus 209 aDiImLDN---m~~e~~~~av~~l~~~~~~~lEa---SGgIt~~ni~~yA~tGVD-----~IS~galths~~ 269 (280) T COG0157 209 ADIIMLDN---MSPEELKEAVKLLGLAGRALLEA---SGGITLENIREYAETGVD-----VISVGALTHSAP 269 (280) T ss_pred CCEEEECC---CCHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHCCCC-----EEEECCCCCCCC T ss_conf 99999769---99999999999744477669997---589787789998626997-----998073304775 No 184 >cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. Probab=82.36 E-value=0.91 Score=24.95 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=7.3 Q ss_pred EECCCCCCCCCCCEEEEE Q ss_conf 823788513269758999 Q gi|254780673|r 60 LCPNGTKNVKVNTPIAAI 77 (467) Q Consensus 60 lv~eG~e~V~VG~~ia~i 77 (467) ++++| |.|..|++|..+ T Consensus 85 ~v~~G-d~V~~G~~L~~~ 101 (124) T cd00210 85 HVEEG-QRVKQGDKLLEF 101 (124) T ss_pred EECCC-CEECCCCEEEEE T ss_conf 97488-999899999998 No 185 >COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Probab=82.34 E-value=3.4 Score=20.87 Aligned_cols=53 Identities=32% Similarity=0.416 Sum_probs=44.1 Q ss_pred CCEEE---EHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEE Q ss_conf 74586---025788888888753100467527973300685799999999987198999 Q gi|254780673|r 340 DVTII---SFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVT 395 (467) Q Consensus 340 ditii---~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~ 395 (467) .+.|+ .||++-..|...|+-|.+.|+.++++++.+- |.+-|.+-+.+...+++ T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv 303 (388) T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV 303 (388) T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC---CHHHHHHHHHHCCEEEE T ss_conf 179998422378799999998776115996299991558---89999999875377999 No 186 >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. Probab=82.25 E-value=3.8 Score=20.56 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=59.3 Q ss_pred CEE-CCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC--- Q ss_conf 101-166662-7899899998871886445666667--899999999987886742117767888799830244576--- Q gi|254780673|r 188 RVI-DTPITE-HGFAGIGIGASFAGLKPIVEFMTFN--FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR--- 260 (467) Q Consensus 188 R~~-d~pi~E-~~~~G~a~G~A~~G~~Piv~~~~~~--f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~--- 260 (467) |+| |-|.+= ...+..|+|+|++--||++. ...| |.+ - +|..+.. .+.++|+++..-.-.+++ T Consensus 43 ~~~~NRG~sGIdg~lstAiGaa~a~~~pvv~-i~GDgsf~~-d----~~eL~t~-----~~~~~pv~ivV~NN~GggIf~ 111 (175) T cd02009 43 RVFANRGASGIDGTLSTALGIALATDKPTVL-LTGDLSFLH-D----LNGLLLG-----KQEPLNLTIVVINNNGGGIFS 111 (175) T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCCEEE-EEECHHHHC-C----HHHHHHH-----HHCCCCEEEEEEECCCCHHHH T ss_conf 7994688535220899999999658998899-970268661-6----7899999-----866998299999489833999 Q ss_pred --------------CCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE Q ss_conf --------------4444332168876322031386652210001055565413783476 Q gi|254780673|r 261 --------------VAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF 306 (467) Q Consensus 261 --------------~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~ 306 (467) .+..|.-++..+ +.-=|+.-..+.+..|++..|..++..++|++. T Consensus 112 ~l~~~~~~~~~~~~~~tp~~~df~~l-A~a~G~~~~~v~~~~el~~al~~~~~~~gp~lI 170 (175) T cd02009 112 LLPQASFEDEFERLFGTPQGLDFEHL-AKAYGLEYRRVSSLDELEQALESALAQDGPHVI 170 (175) T ss_pred HHHHHHCCCCCCEEECCCCCCCHHHH-HHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEE T ss_conf 98775036864312157776689999-998699779849999999999999838998999 No 187 >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional Probab=82.08 E-value=1.6 Score=23.14 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=18.8 Q ss_pred CCCHHHHHHHHHHC---CCEEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 57999999999871---9899995788767678999999999677 Q gi|254780673|r 377 PMDWQTIFESVKKT---GRLVTVEEGYPQSSVGSTIANQVQRKVF 418 (467) Q Consensus 377 Pld~~~i~~sv~kt---~~~i~vee~~~~gg~g~~i~~~i~e~~f 418 (467) -|..+.+.+.++.- ..-+.+|= .||+.-+=+....+-+- T Consensus 226 Nms~e~~~~av~~~~~~~~~v~lEa---SGgI~~~ni~~yA~tGV 267 (288) T PRK07896 226 NFPVWQTQEAVQRRDARAPTVLLES---SGGLTLDTAAAYAATGV 267 (288) T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHCCC T ss_conf 9999999999999837698748999---88999999999996599 No 188 >COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane] Probab=81.78 E-value=4 Score=20.45 Aligned_cols=46 Identities=26% Similarity=0.243 Sum_probs=35.0 Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 985999953753334317778689899823788513269758999437 Q gi|254780673|r 33 GDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 33 gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) -...-.++. .-..++.+...|.+.+|++++| +.|..|++++.+++. T Consensus 55 ~~~~G~v~~-~~~~~v~~~~~G~v~~i~v~~G-~~Vk~Gq~L~~ld~~ 100 (372) T COG0845 55 VRAPGRVEA-TRSVEVLARVAGIVAEILVKEG-DRVKKGQLLARLDPS 100 (372) T ss_pred EEEEEEEEE-EEEEEEECCCCCEEEEEEECCC-CEEECCCEEEEECCH T ss_conf 787569986-1347874036747989983689-888359748995532 No 189 >PRK00149 dnaA chromosomal replication initiation protein; Reviewed Probab=81.75 E-value=2.5 Score=21.84 Aligned_cols=172 Identities=18% Similarity=0.258 Sum_probs=71.9 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH-HHHH-HHHHHHCCCEEEEEECCHHCCCHHHHHHH Q ss_conf 899999999987886742117767888799830244576444433-2168-87632203138665221000105556541 Q gi|254780673|r 222 FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHS-QCYA-AWYSHVPGLKVVIPYTASDAKGLLKAAIR 299 (467) Q Consensus 222 f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~~-~~~~~iPgl~V~~P~~~~d~~~ll~~ai~ 299 (467) |.-=-.+++-..||+...-..|....|+.+-| +.|.|-||- |.+. .+..+-|+.+|++-+.. +.-.-+..+++ T Consensus 121 FVvG~sN~lA~aAA~~Va~~pg~~yNPLfIyG----~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae-~F~~~~v~al~ 195 (447) T PRK00149 121 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYG----GVGLGKTHLLHAIGNYILEKNPNAKVVYVSSE-KFTNDFVKALR 195 (447) T ss_pred CEECCCCHHHHHHHHHHHHCCCCCCCCEEEEC----CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHH-HHHHHHHHHHH T ss_conf 22269859999999999837676778558977----99887889999999999985899728995499-99999999985 Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEE-----------EEECCCCCEEEEHHHHHHHHHHHHHHHHC---CCC Q ss_conf 3783476402123333345334663121443114-----------44316874586025788888888753100---467 Q gi|254780673|r 300 DPNPVIFLENEILYGSSFEVPMVDDLVIPIGRAR-----------IHRQGSDVTIISFGIGMTYATKAAIELEK---NGI 365 (467) Q Consensus 300 ~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~-----------i~~~G~ditii~~G~~~~~a~~aa~~L~~---~gi 365 (467) .++.--| |-.| ++.++--.||.-+=-||.. ....|+.+-+-+-. .-.+.-..-+.|.. -|+ T Consensus 196 ~~~~~~F---r~~y-r~~DvLliDDiqfl~gk~~tqeeff~~fn~l~~~~kqiv~tsd~-~P~~l~~l~~rL~SRf~~Gl 270 (447) T PRK00149 196 NNAMEEF---KEKY-RSVDVLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVITSDR-PPKELEGLEDRLRSRFEWGL 270 (447) T ss_pred CCCHHHH---HHHH-HCCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCC-CHHHCCCCCHHHHHHHHCCE T ss_conf 1869999---9999-72885432148886055779999999999999849968995788-96765651177886763762 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 527973300685799999999987198999957887676789999999996 Q gi|254780673|r 366 DAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRK 416 (467) Q Consensus 366 ~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~ 416 (467) .++ |.|.|.++-++.+++--. +. .-.+..++...|.++ T Consensus 271 ~~~------i~~Pd~e~r~~Il~~k~~----~~---~~~l~~~v~~~iA~~ 308 (447) T PRK00149 271 TVD------IEPPDLETRVAILQKKAE----EE---GINLPNEVLEFIAKR 308 (447) T ss_pred EEE------CCCCCHHHHHHHHHHHHH----HC---CCCCCHHHHHHHHHH T ss_conf 651------059999999999999999----72---899998999999971 No 190 >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. Probab=81.67 E-value=4 Score=20.42 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=57.2 Q ss_pred HHHHCCCCCEECCCCCHHHHHH----HHHHHHHCC-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 4754081110116666278998----999988718-864456666-6789999999998788674211776788879983 Q gi|254780673|r 180 LLQEFGCERVIDTPITEHGFAG----IGIGASFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG 253 (467) Q Consensus 180 l~~~fg~~R~~d~pi~E~~~~G----~a~G~A~~G-~~Piv~~~~-~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~ 253 (467) +.+-+.|.|++..+= .+.+| .|+|++++- -||++.+.- ..|.|...+ +..+. +.++|+++.. T Consensus 32 ~~~~~~p~~~~~s~~--~g~mG~glpaAiGa~lA~p~~~Vv~i~GDG~f~m~~~E--L~Ta~--------~~~lpi~iiV 99 (177) T cd02010 32 YYRTYAPNTCLISNG--LATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNSQE--LETAV--------RLKIPLVVLI 99 (177) T ss_pred HCCCCCCCEEECCCC--CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCHH--HHHHH--------HHCCCEEEEE T ss_conf 677589990874898--63688899999999987899859999289861106668--88999--------7288403999 Q ss_pred ECCCCCC-------------CCHHH-HHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE Q ss_conf 0244576-------------44443-32168876322031386652210001055565413783476 Q gi|254780673|r 254 PNGAAAR-------------VAAQH-SQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF 306 (467) Q Consensus 254 p~G~~~~-------------~g~~H-s~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~ 306 (467) -.-.+++ .|... .-++..+-... |.+-..-.++.|+...|+.++..++|+++ T Consensus 100 ~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~el~~al~~a~~~~gp~li 165 (177) T cd02010 100 WNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVI 165 (177) T ss_pred EECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHCCCCEEE T ss_conf 9898048999999986397534618999989999987-98799989999999999999848995999 No 191 >pfam00358 PTS_EIIA_1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1. Probab=80.23 E-value=1.2 Score=24.08 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=6.3 Q ss_pred EECCCCCCCCCCCEEEEE Q ss_conf 823788513269758999 Q gi|254780673|r 60 LCPNGTKNVKVNTPIAAI 77 (467) Q Consensus 60 lv~eG~e~V~VG~~ia~i 77 (467) ++++|+ .|..|++|+.+ T Consensus 90 ~v~~Gd-~V~~G~~L~~~ 106 (133) T pfam00358 90 HVEEGD-RVKQGDKLLEF 106 (133) T ss_pred EECCCC-EECCCCEEEEE T ss_conf 975899-99899999998 No 192 >PRK04350 thymidine phosphorylase; Provisional Probab=80.00 E-value=2.6 Score=21.71 Aligned_cols=18 Identities=11% Similarity=0.285 Sum_probs=6.5 Q ss_pred CHHHHHHHHHHHHHCCCC Q ss_conf 627899899998871886 Q gi|254780673|r 195 TEHGFAGIGIGASFAGLK 212 (467) Q Consensus 195 ~E~~~~G~a~G~A~~G~~ 212 (467) ++-.+..+-...+.+||- T Consensus 124 sd~e~aaFl~A~~~~gm~ 141 (502) T PRK04350 124 SDIELSAFLTASAINGLD 141 (502) T ss_pred CHHHHHHHHHHHHHCCCC T ss_conf 899999999999734999 No 193 >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional Probab=79.97 E-value=2.4 Score=21.93 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=30.6 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCC Q ss_conf 279733006857999999999871989999578876767899999999967764289829971777 Q gi|254780673|r 367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRD 432 (467) Q Consensus 367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d 432 (467) +++|=|- -|+.+.+.+.++.-+.-+.+| ..||+.-+=+....+-+-+ ..-+++.- T Consensus 213 ~d~ImLD---Nmsp~~~~~av~~~~~~~~~E---aSGgI~~~ni~~yA~tGvD-----~IS~g~lt 267 (281) T PRK06106 213 VDAVLLD---NMSPDTLREAVAIVAGRAITE---ASGRITPETAPAIAASGVD-----LISVGWLT 267 (281) T ss_pred CCEEEEC---CCCHHHHHHHHHHHCCCEEEE---EECCCCHHHHHHHHHCCCC-----EEECCHHH T ss_conf 9899987---999999999999856846899---9789999999999973999-----99838432 No 194 >TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit; InterPro: IPR005726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents the alpha subunit from the A1 complex of A-ATPases. The A1 complex contains three copies each of subunits alpha (or A) and beta (or B) (IPR005724 from INTERPRO), both of which form the headpiece that participates in nucleotide binding. However, only the alpha subunit is catalytic, the beta subunit being regulatory in function . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane, 0016469 proton-transporting two-sector ATPase complex. Probab=78.88 E-value=4.9 Score=19.81 Aligned_cols=56 Identities=36% Similarity=0.464 Sum_probs=44.5 Q ss_pred ECCCCCEECCCCEEEEE-ECCCCEEE--EECCCCC-EEEEEEECCCCCCCCCCCEEEEEECCCC Q ss_conf 41789762589859999-53753334--3177786-8989982378851326975899943777 Q gi|254780673|r 23 KKNEGDLIKQGDIIYEV-ETDKAVME--VESIDEG-ILGKILCPNGTKNVKVNTPIAAILQEGE 82 (467) Q Consensus 23 ~vk~GD~V~~gd~l~ei-ETDKat~E--V~A~~~G-~i~~ilv~eG~e~V~VG~~ia~i~~ege 82 (467) .++.||.|+.||+|-.| ||..+..- ||-...| .|.+| .+| + ..|-+.|+.+..+|. T Consensus 122 ~v~~Gd~V~~Gd~~G~V~ET~~i~h~ilvPp~~~gg~~~~~--~~G-~-ftV~d~i~~~~~~G~ 181 (584) T TIGR01043 122 TVKEGDKVEGGDIIGVVQETSLIEHKILVPPNVEGGEIVEI--AEG-D-FTVEDTIAVVEKDGE 181 (584) T ss_pred EECCCCEECCCCEEEEECCCCCEEEEEEECCCCCCCEEEEE--ECC-C-EEEEEEEEEEECCCC T ss_conf 12268643476158776376503347773574578757787--267-3-146556899822788 No 195 >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Probab=78.86 E-value=4 Score=20.41 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=22.1 Q ss_pred HHHHHHHHHHH-H------HHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 89999999996-7------7642898299717778888896676560899899999999985 Q gi|254780673|r 406 GSTIANQVQRK-V------FDYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVESIC 460 (467) Q Consensus 406 g~~i~~~i~e~-~------f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~av~~v~ 460 (467) ..++...+.++ + +..|+..+.||+... +.. .+ +.+..+++++.++ T Consensus 304 ~~~~~~~l~~~~~i~i~~g~g~~~~~~fRIg~mG----~~~-~~-----di~~~l~al~~~L 355 (356) T cd06451 304 GDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMG----EAT-RE-----DVLGVLSALEEAL 355 (356) T ss_pred HHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCC----CCC-HH-----HHHHHHHHHHHHH T ss_conf 9999999999789999788665689589861898----999-99-----9999999999985 No 196 >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. Probab=78.65 E-value=2.5 Score=21.86 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=23.8 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 27973300685799999999987198999957887676789999999996776 Q gi|254780673|r 367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD 419 (467) Q Consensus 367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~ 419 (467) +++|=|-...|=+.....+.+++...-+.+|- .||+.-+=+....+-+-+ T Consensus 204 ~d~I~LDn~s~~~ik~~v~~~~~~~~~v~iea---SGgI~~~ni~~yA~tGvD 253 (272) T cd01573 204 ADILQLDKFSPEELAELVPKLRSLAPPVLLAA---AGGINIENAAAYAAAGAD 253 (272) T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHCCCC T ss_conf 99999779999999999999744488769999---899999999999973999 No 197 >COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion] Probab=77.97 E-value=5.2 Score=19.63 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=41.3 Q ss_pred EEEE----CCCCCEECCCCEEEEEE-CC---CCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC Q ss_conf 8774----17897625898599995-37---5333431777868989982378851326975899943777 Q gi|254780673|r 20 AKWK----KNEGDLIKQGDIIYEVE-TD---KAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE 82 (467) Q Consensus 20 ~~W~----vk~GD~V~~gd~l~eiE-TD---Kat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege 82 (467) .+|. +|+||.|..||+|-.|. |- |.. ||-+.+|.+..+.+.+| + ..|.++||.+.+++. T Consensus 114 ~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~im--vpp~~~~~~v~~i~~~G-~-ytv~d~ia~v~~~~g 180 (588) T COG1155 114 KKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRI--MVPPGVSGKVTWIAEEG-E-YTVEDVIATVSTEGG 180 (588) T ss_pred CCCCCCCCCCCCCEECCCCEEEEECCCCCEEEEE--ECCCCCCEEEEEEECCC-C-CEEEEEEEEEECCCC T ss_conf 5200034666698752685489860677357998--37887762899995588-7-156679999952797 No 198 >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional Probab=77.79 E-value=2.7 Score=21.58 Aligned_cols=50 Identities=20% Similarity=0.366 Sum_probs=24.9 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHCC--CEEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 2797330068579999999998719--8999957887676789999999996776 Q gi|254780673|r 367 AELIDLRTIRPMDWQTIFESVKKTG--RLVTVEEGYPQSSVGSTIANQVQRKVFD 419 (467) Q Consensus 367 ~~vid~r~l~Pld~~~i~~sv~kt~--~~i~vee~~~~gg~g~~i~~~i~e~~f~ 419 (467) +++|=|-...|=+...+.+.+++.+ .=+.+|= .||+--+=++.+.+-+-| T Consensus 204 ~d~I~LDn~s~e~~~~~v~~l~~~~~~~~v~iea---SGGI~~~ni~~ya~tGVD 255 (279) T PRK08385 204 ADIIMLDNMTPEEIREVIEALKELGLREKVKIEV---SGGITPETIAEYAKLDVD 255 (279) T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHCCCC T ss_conf 9999984999999999999987507689789999---789989999999855989 No 199 >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional Probab=77.17 E-value=2.9 Score=21.38 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=18.5 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH Q ss_conf 279733006857999999999871989999578876767899999999967 Q gi|254780673|r 367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKV 417 (467) Q Consensus 367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~ 417 (467) +++|=|-...|=+.....+..++...=+.+|= .||+.-+=+....+-+ T Consensus 202 aDiI~LDn~~~e~~k~~v~~~~~~~~~v~iea---SGGI~~~ni~~yA~~G 249 (272) T PRK05848 202 ADIVMCDNMSVEETKEIVAYRNANYPHVLLEA---SGNISLETINAYAKSG 249 (272) T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHCC T ss_conf 99899589999999999998746488779999---7999899999999659 No 200 >TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases. Probab=76.75 E-value=3.2 Score=21.08 Aligned_cols=11 Identities=18% Similarity=0.015 Sum_probs=4.0 Q ss_pred HHHHHHHHHHH Q ss_conf 88888888753 Q gi|254780673|r 349 GMTYATKAAIE 359 (467) Q Consensus 349 ~~~~a~~aa~~ 359 (467) .+..++|+.+- T Consensus 327 ~iGnaLEv~Ea 337 (500) T TIGR03327 327 AIGPALEAKEA 337 (500) T ss_pred CCCCHHHHHHH T ss_conf 24318999999 No 201 >TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport. Probab=76.63 E-value=1.6 Score=23.12 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=36.5 Q ss_pred EECCCCCEEEEH---HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC-CCEEEE----ECCCCCCCHH Q ss_conf 431687458602---57888888887531004675279733006857999999999871-989999----5788767678 Q gi|254780673|r 335 HRQGSDVTIISF---GIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKT-GRLVTV----EEGYPQSSVG 406 (467) Q Consensus 335 ~~~G~ditii~~---G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt-~~~i~v----ee~~~~gg~g 406 (467) +||-=||=+|+= --++..||.||+. .+.-|-||= -+|.-+| +|+|-+ |-....-.++ T Consensus 197 LReDPDvILiGE~RD~ET~~~AL~AAET--------GHLV~gTLH-------TnsA~~ti~RIid~FP~~~~~qiR~~La 261 (350) T TIGR01420 197 LREDPDVILIGEMRDLETVELALTAAET--------GHLVFGTLH-------TNSAAKTIERIIDVFPAEEQEQIRTQLA 261 (350) T ss_pred HCCCCCEEEEECCCCHHHHHHHHHHHHH--------CCHHHHHHH-------HHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 1028988998255627899999987421--------315676666-------4238887677742597756689999998 Q ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCC Q ss_conf 99999999967764289829971777888 Q gi|254780673|r 407 STIANQVQRKVFDYLDAPILTITGRDVPM 435 (467) Q Consensus 407 ~~i~~~i~e~~f~~L~~p~~ri~~~d~p~ 435 (467) ..+.+.++++.... +.-.-|+...++=+ T Consensus 262 ~~L~Av~sQrL~p~-~~G~GRv~~~Eil~ 289 (350) T TIGR01420 262 ESLVAVISQRLLPK-KNGGGRVLAVEILI 289 (350) T ss_pred HHHHHHHCCCCEEE-CCCCCEEEEEEEEC T ss_conf 76787700054223-38962588887521 No 202 >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional Probab=76.57 E-value=3 Score=21.27 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=24.5 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 27973300685799999999987198999957887676789999999996776 Q gi|254780673|r 367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD 419 (467) Q Consensus 367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~ 419 (467) +++|=|-... .+.+.+.++.-+.-+.+| ..||+.-+=+....+-+-| T Consensus 214 ~D~ImLDnms---~~~i~~av~~i~~~~~lE---aSGgI~~~ni~~yA~tGVD 260 (281) T PRK06543 214 VDTIMLDNFT---LDQLREGVELIDGRAIVE---ASGNVSLNTVPAIASTGVD 260 (281) T ss_pred CCEEEECCCC---HHHHHHHHHHHCCCEEEE---EECCCCHHHHHHHHHCCCC T ss_conf 9999977989---999999999757937999---9889999999999973999 No 203 >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional Probab=76.41 E-value=3.1 Score=21.21 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=23.4 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 27973300685799999999987198999957887676789999999996776 Q gi|254780673|r 367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD 419 (467) Q Consensus 367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~ 419 (467) +++|=|-...| +.+.+.++....-+.+|= .||+.-+=+....+-+-| T Consensus 209 ~diImLDNm~p---~~ik~~v~~~~~~~~~Ea---SGgI~~~ni~~yA~tGVD 255 (277) T PRK08072 209 ADIIMFDNRTP---DEIREFVKLVPSAIVTEA---SGGITLENLPKYGGTGVD 255 (277) T ss_pred CCEEEECCCCH---HHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHCCCC T ss_conf 98999879899---999999996169649999---889989999999964999 No 204 >PRK06096 molybdenum transport protein ModD; Provisional Probab=76.26 E-value=2.7 Score=21.60 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=30.6 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 527973300685799999999987198999957887676789999999996776 Q gi|254780673|r 366 DAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD 419 (467) Q Consensus 366 ~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~ 419 (467) .+++|-|-...|=+.....+.+++.+.=+++|- .||+--+=+....+-+-| T Consensus 209 gaD~IlLDnmsp~~l~~av~~~~~~~~~~~lEa---SGGI~~~ni~~yA~tGVD 259 (284) T PRK06096 209 QPDVLQLDKFSPQQATEIAQIAPSLAPHCTLAL---TGGINLTTLKNYLDCGIR 259 (284) T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHCCCC T ss_conf 999999689899999999999872179779999---899999999999980999 No 205 >TIGR00830 PTBA PTS system, glucose subfamily, IIA component; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . ; GO: 0005351 sugar:hydrogen ion symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane. Probab=75.71 E-value=1.4 Score=23.70 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=20.1 Q ss_pred EEEEECCCCCEECCCCEEEEEECCCCEE Q ss_conf 9877417897625898599995375333 Q gi|254780673|r 19 IAKWKKNEGDLIKQGDIIYEVETDKAVM 46 (467) Q Consensus 19 i~~W~vk~GD~V~~gd~l~eiETDKat~ 46 (467) +=+-++++||.|++||.|.|+.-|+..- T Consensus 89 vF~~~v~~G~~V~~Gd~l~efD~~~i~~ 116 (129) T TIGR00830 89 VFTSHVEEGDKVKKGDPLLEFDLPAIKK 116 (129) T ss_pred EEEEEEEECCEECCCCEEEEECHHHHHH T ss_conf 2478764387871797799956699963 No 206 >TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component; InterPro: IPR011297 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . This entry represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (hydroquinone-O-beta-D-glucopyranoside) . These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system. Probab=75.48 E-value=1 Score=24.64 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=3.9 Q ss_pred HHHHHHHHHHCC Q ss_conf 998999988718 Q gi|254780673|r 199 FAGIGIGASFAG 210 (467) Q Consensus 199 ~~G~a~G~A~~G 210 (467) |+|-|+|=+..| T Consensus 410 ~igGa~GG~i~G 421 (660) T TIGR01995 410 MIGGAVGGAIIG 421 (660) T ss_pred EHHHHHHHHHHH T ss_conf 057889999999 No 207 >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. Probab=75.21 E-value=3 Score=21.30 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=27.7 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCC Q ss_conf 27973300685799999999987198999957887676789999999996776428982997177 Q gi|254780673|r 367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGR 431 (467) Q Consensus 367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~ 431 (467) +++|-|-...| +.+.+.++.-+.=+.+| ..||+--+=+....+-+-+ ..-++++ T Consensus 203 adiI~LDn~sp---e~~~~~v~~~~~~v~ie---aSGgIn~~ni~~ya~~GvD-----~Is~g~l 256 (268) T cd01572 203 ADIIMLDNMSP---EELREAVALLKGRVLLE---ASGGITLENIRAYAETGVD-----YISVGAL 256 (268) T ss_pred CCEEEECCCCH---HHHHHHHHHHCCCEEEE---EECCCCHHHHHHHHHCCCC-----EEECCHH T ss_conf 99999779999---99999999866956999---9899989999999975999-----9983854 No 208 >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional Probab=75.18 E-value=2.9 Score=21.35 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=24.5 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 27973300685799999999987198999957887676789999999996776 Q gi|254780673|r 367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD 419 (467) Q Consensus 367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~ 419 (467) +++|-|-... .+.+.+.++..+.=+.+| -.||+--+=+....+-+-| T Consensus 210 aDiI~LDnms---~~~lk~av~~~~~~~~iE---aSGGI~~~ni~~yA~tGvD 256 (277) T PRK05742 210 ADIVMLDELS---LDDMREAVRLTAGRAKLE---ASGGINETTLRVIAETGVD 256 (277) T ss_pred CCEEEECCCC---HHHHHHHHHHHCCCEEEE---EECCCCHHHHHHHHHCCCC T ss_conf 9899986999---999999999747974899---9889999999999974999 No 209 >pfam06898 YqfD Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown. Probab=74.65 E-value=5.1 Score=19.69 Aligned_cols=18 Identities=17% Similarity=0.543 Sum_probs=8.2 Q ss_pred EEECCCCCEEEEEEECCC Q ss_conf 431777868989982378 Q gi|254780673|r 47 EVESIDEGILGKILCPNG 64 (467) Q Consensus 47 EV~A~~~G~i~~ilv~eG 64 (467) .+-|-.+|+|.++.+..| T Consensus 191 ~iVA~k~GvI~~i~v~~G 208 (383) T pfam06898 191 NIVAKKDGIITRMYVTKG 208 (383) T ss_pred CEEECCCCEEEEEEECCC T ss_conf 658999979999996477 No 210 >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. Probab=74.51 E-value=6.4 Score=19.01 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=55.4 Q ss_pred CCCCCEECCCC-CH-HHHHHHHHHHHHCC-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC Q ss_conf 08111011666-62-78998999988718-864456666-6789999999998788674211776788879983024457 Q gi|254780673|r 184 FGCERVIDTPI-TE-HGFAGIGIGASFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAA 259 (467) Q Consensus 184 fg~~R~~d~pi-~E-~~~~G~a~G~A~~G-~~Piv~~~~-~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~ 259 (467) ..|.|++-.+- .- ..-++.|+|++++- -||++.+.- ..|.|...+ +..++ +.++|+++..-.-.++ T Consensus 39 ~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~Vv~i~GDG~f~m~~~E--l~Ta~--------~~~lpi~~vV~nN~~~ 108 (178) T cd02014 39 NGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD--LITAV--------KYNLPVIVVVFNNSDL 108 (178) T ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHH--HHHHH--------HHCCCCEEEEEECCHH T ss_conf 8998487378865377899999999984899808999777067406189--99899--------8589813999989615 Q ss_pred C-------------CC-HHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE Q ss_conf 6-------------44-44332168876322031386652210001055565413783476 Q gi|254780673|r 260 R-------------VA-AQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF 306 (467) Q Consensus 260 ~-------------~g-~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~ 306 (467) + .| ..+.-++..+-... |+.-..-.++.|+...|+.+++.++|+++ T Consensus 109 g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gP~li 168 (178) T cd02014 109 GFIKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVI 168 (178) T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHCCCCEEE T ss_conf 8999999985799752537999889999976-97079978999999999999968997999 No 211 >pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Probab=73.58 E-value=6.7 Score=18.85 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=17.3 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 999578876767899999999967764289829 Q gi|254780673|r 394 VTVEEGYPQSSVGSTIANQVQRKVFDYLDAPIL 426 (467) Q Consensus 394 i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ 426 (467) ++||-+...-....++..++.+++..|||+|+- T Consensus 90 iiid~sT~~p~~~~~~~~~~~~~g~~~lDaPVs 122 (163) T pfam03446 90 IIIDGSTISPDDTRRLAKELKEKGIRFLDAPVS 122 (163) T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 898679899999999999875303443478776 No 212 >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional Probab=73.30 E-value=4.1 Score=20.34 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=28.9 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCC Q ss_conf 5279733006857999999999871989999578876767899999999967764289829971777 Q gi|254780673|r 366 DAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRD 432 (467) Q Consensus 366 ~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d 432 (467) .+++|-|-...|=+.....+.+++.+.=+.+|= .||+.-+=+....+-+-+ ..-++++- T Consensus 213 g~DiI~LDnm~~~~~~~~v~~l~~~~~~v~iEa---SGgIn~~ni~~yA~tGVD-----~Is~galt 271 (285) T PRK07428 213 GADIIMLDNMPVDQMQQAVQLIRQQNPRVKIEA---SGNITLETIRAVAETGVD-----YISTSAPI 271 (285) T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHCCCC-----EEECCHHH T ss_conf 999999879999999999999873089889999---899999999999974999-----99838310 No 213 >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. Probab=73.04 E-value=6.9 Score=18.77 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=29.8 Q ss_pred HHHHCCCCCEECCCCCHHHHHHHH----HHHHHCC-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 475408111011666627899899----9988718-864456666-6789999999998788674211776788879983 Q gi|254780673|r 180 LLQEFGCERVIDTPITEHGFAGIG----IGASFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG 253 (467) Q Consensus 180 l~~~fg~~R~~d~pi~E~~~~G~a----~G~A~~G-~~Piv~~~~-~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~ 253 (467) ++.-+.|.++++.+-. +-+|.+ +|++++. -|||+.+.- ..|.|...+ +-.++ +.++|+++.. T Consensus 41 ~~~~~~p~~~~~s~~~--g~mG~glPaAiGaklA~Pdr~Vv~i~GDGsf~m~~~E--L~Ta~--------r~~lpii~vV 108 (202) T cd02006 41 MLHVYKPRHWINCGQA--GPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEE--LAVGA--------QHRIPYIHVL 108 (202) T ss_pred HCCCCCCCEEECCCCC--CHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH--HHHHH--------HHCCCEEEEE T ss_conf 5686899918658998--7033189999999987699859999768405512999--99999--------9699839999 No 214 >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. Probab=72.99 E-value=6.9 Score=18.76 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=55.9 Q ss_pred HHHCCCCCEECCCCCHHHHHH----HHHHHHHCC-CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE Q ss_conf 754081110116666278998----999988718-86445666-667899999999987886742117767888799830 Q gi|254780673|r 181 LQEFGCERVIDTPITEHGFAG----IGIGASFAG-LKPIVEFM-TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP 254 (467) Q Consensus 181 ~~~fg~~R~~d~pi~E~~~~G----~a~G~A~~G-~~Piv~~~-~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p 254 (467) ..-.+|.|++..+- .+.+| .|+|++++- -||++.+. ...|.|...+ +..+++ .++|+++..- T Consensus 35 ~~~~~p~~~~~s~~--~g~mG~~lpaAIGa~la~p~r~vv~i~GDG~f~m~~~E--L~Ta~~--------~~lpi~~iV~ 102 (186) T cd02015 35 YRFKKPRSWLTSGG--LGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNIQE--LATAAQ--------YNLPVKIVIL 102 (186) T ss_pred CCCCCCCEEECCCC--CCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHH--HHHHHH--------HCCCCEEEEE T ss_conf 36189993984798--73566599999999986899818999767077503599--999998--------6699479999 Q ss_pred CCCCCC-------------CCHHH-H--HHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE Q ss_conf 244576-------------44443-3--2168876322031386652210001055565413783476 Q gi|254780673|r 255 NGAAAR-------------VAAQH-S--QCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF 306 (467) Q Consensus 255 ~G~~~~-------------~g~~H-s--~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~ 306 (467) .-.+++ ...+. . -++..+-. -=|..-..-.++.|++..|+.+++.++|++. T Consensus 103 NN~~~g~i~~~q~~~~~~~~~~~~~~~~pd~~~iA~-a~G~~~~~v~~~~el~~al~~a~~~~gP~li 169 (186) T cd02015 103 NNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAE-AYGIKGLRVEKPEELEAALKEALASDGPVLL 169 (186) T ss_pred ECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH-HCCCEEEEECCHHHHHHHHHHHHHCCCCEEE T ss_conf 897068899999997289766656788877689999-7597699978999999999999848997999 No 215 >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. Probab=72.84 E-value=4.1 Score=20.33 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=22.3 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 2797330068579999999998719899995788767678999999999677 Q gi|254780673|r 367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVF 418 (467) Q Consensus 367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f 418 (467) +++|=|-...|=+.....+.++...++. +| ..||+.-+=+....+-+- T Consensus 202 ~D~I~LDn~~~~~~~~~v~~~~~~~~v~-ie---aSGgI~~~ni~~ya~~Gv 249 (269) T cd01568 202 ADIIMLDNMSPEELKEAVKLLKGLPRVL-LE---ASGGITLENIRAYAETGV 249 (269) T ss_pred CCEEEECCCCHHHHHHHHHHHCCCCCEE-EE---EECCCCHHHHHHHHHCCC T ss_conf 9999987989999999999847799859-99---989999999999997599 No 216 >pfam02666 PS_Dcarbxylase Phosphatidylserine decarboxylase. This is a family of phosphatidylserine decarboxylases, EC:4.1.1.65. These enzymes catalyse the reaction: Phosphatidyl-L-serine <= phosphatidylethanolamine + CO2. Phosphatidylserine decarboxylase plays a central role in the biosynthesis of aminophospholipids by converting phosphatidylserine to phosphatidylethanolamine. Probab=72.58 E-value=7.1 Score=18.70 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=14.8 Q ss_pred EEEEECCCCCEEEEHHHHHHHHHH Q ss_conf 144431687458602578888888 Q gi|254780673|r 332 ARIHRQGSDVTIISFGIGMTYATK 355 (467) Q Consensus 332 ~~i~~~G~ditii~~G~~~~~a~~ 355 (467) ...+++|+.+-.+.+|+++-..++ T Consensus 155 g~~v~kG~e~G~f~fGStV~l~f~ 178 (201) T pfam02666 155 GDEVKKGDELGYFKFGSTVVLLFP 178 (201) T ss_pred CCEEECCCEEEEEECCCEEEEEEE T ss_conf 979845748807962880999995 No 217 >COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms] Probab=72.50 E-value=6.7 Score=18.83 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=31.6 Q ss_pred ECCCCE-----EEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 537533-----34317778689899823788513269758999437 Q gi|254780673|r 40 ETDKAV-----MEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 40 ETDKat-----~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) .||.|- +-|-+..+|.|.++.+.+. +.|.-|++|..|+.. T Consensus 43 ~TddAyv~~~vv~Iap~VsG~V~eV~V~dn-q~Vk~Gd~L~~iD~~ 87 (352) T COG1566 43 STDDAYVRADVVPIAPQVSGRVTEVNVKDN-QLVKKGDVLFRIDPR 87 (352) T ss_pred CCCCEEEEEEEEEECCCCCEEEEEEEECCC-CEECCCCEEEEECCH T ss_conf 457669997799983767358999991689-885189768998957 No 218 >COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism] Probab=72.41 E-value=2.3 Score=22.11 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=15.0 Q ss_pred EEEEEECCCCCEECCCCEEEEEECCCC Q ss_conf 898774178976258985999953753 Q gi|254780673|r 18 NIAKWKKNEGDLIKQGDIIYEVETDKA 44 (467) Q Consensus 18 ~i~~W~vk~GD~V~~gd~l~eiETDKa 44 (467) +-=+-++++||.|+.||.|++..-|+. T Consensus 87 egF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156) T COG2190 87 EGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156) T ss_pred CCEEEEEECCCEECCCCEEEEECHHHH T ss_conf 324787507998815989899979999 No 219 >PRK10255 N-acetyl glucosamine specific PTS system components IIABC; Provisional Probab=70.66 E-value=2.4 Score=21.95 Aligned_cols=10 Identities=30% Similarity=0.288 Sum_probs=4.9 Q ss_pred HHHCCCEEEE Q ss_conf 9871989999 Q gi|254780673|r 387 VKKTGRLVTV 396 (467) Q Consensus 387 v~kt~~~i~v 396 (467) +|++|..=++ T Consensus 431 lK~~GA~Gvv 440 (648) T PRK10255 431 CKRLGASGVV 440 (648) T ss_pred HHHCCCCEEE T ss_conf 9866998599 No 220 >PRK08266 hypothetical protein; Provisional Probab=70.39 E-value=7.9 Score=18.37 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=10.2 Q ss_pred CHHHHHHHHHHHHCCC Q ss_conf 9899999999985020 Q gi|254780673|r 448 NVDEIIESVESICYKR 463 (467) Q Consensus 448 ~~~~I~~av~~v~~~~ 463 (467) +.+++-+++++....+ T Consensus 497 ~~~el~~al~~a~~~~ 512 (531) T PRK08266 497 SPEELRAALEAALALG 512 (531) T ss_pred CHHHHHHHHHHHHHCC T ss_conf 9999999999998289 No 221 >TIGR00999 8a0102 Membrane Fusion Protein cluster 2 protein; InterPro: IPR005695 Gram-negative bacteria have evolved transport complexes that export macromolecules and toxic substances such as heavy metals across the two membranes of the cell envelope in a single energy coupled step. The process requires (1) a cytoplasmic membrane export system, (2) a membrane fusion protein (MFP), and (3) an outer membrane factor. Phylogenetic analyses reveal that the MFPs cluster in accordance with the type of cytoplasmic membrane transport systems with which they function - proteins in this family are associated with reisistance to heavy metal poisoning. ; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport. Probab=70.37 E-value=5.7 Score=19.32 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=27.9 Q ss_pred EEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC Q ss_conf 3431777868989982378851326975899943777 Q gi|254780673|r 46 MEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE 82 (467) Q Consensus 46 ~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege 82 (467) .||-||.+|.|.+-.+..| +-|.-++.+..|.+.+. T Consensus 105 ~evrsP~~G~i~~k~v~~G-~~v~~~~~~f~~~~~~~ 140 (284) T TIGR00999 105 AEVRSPFDGYIVEKSVTLG-DYVAPQAELFRVADLGA 140 (284) T ss_pred HHHCCCCCCEEEEEEEECC-CCCCCCCCEEEEECCCE T ss_conf 2211886878999974117-20068973377764716 No 222 >PRK06457 pyruvate dehydrogenase; Provisional Probab=70.33 E-value=7.9 Score=18.36 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=7.1 Q ss_pred CHHHHHHHHHHHHC Q ss_conf 98999999999850 Q gi|254780673|r 448 NVDEIIESVESICY 461 (467) Q Consensus 448 ~~~~I~~av~~v~~ 461 (467) +.+++-.++++.+. T Consensus 494 ~~~el~~al~~A~~ 507 (549) T PRK06457 494 DPNELEEAIEEFLN 507 (549) T ss_pred CHHHHHHHHHHHHC T ss_conf 99999999999981 No 223 >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] Probab=70.04 E-value=8 Score=18.32 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=10.6 Q ss_pred HHHHHCCCEEEEEEC Q ss_conf 763220313866522 Q gi|254780673|r 272 WYSHVPGLKVVIPYT 286 (467) Q Consensus 272 ~~~~iPgl~V~~P~~ 286 (467) -++.-|||..++-|. T Consensus 194 ~l~~PPGla~v~~S~ 208 (383) T COG0075 194 ALGAPPGLAFVAVSE 208 (383) T ss_pred HCCCCCCCCEEEECH T ss_conf 115898614367779 No 224 >COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] Probab=69.96 E-value=2.3 Score=22.09 Aligned_cols=122 Identities=23% Similarity=0.249 Sum_probs=61.6 Q ss_pred CCHHHHCCC-CCEECCCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE--EE Q ss_conf 364754081-110116666-27899899998871886445666667899999999987886742117767888799--83 Q gi|254780673|r 178 QGLLQEFGC-ERVIDTPIT-EHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF--RG 253 (467) Q Consensus 178 ~gl~~~fg~-~R~~d~pi~-E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~--r~ 253 (467) ++|+...-. .-+.+.|.+ |..-+|.++|+.++|.||-.-.|.. .+-.-+|-.+.+. .+ -+++++|++ || T Consensus 31 k~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQns-----GlGNsiNal~SL~-~t-y~iPl~ml~ShRG 103 (172) T COG4032 31 KNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNS-----GLGNSINALASLY-VT-YKIPLLMLASHRG 103 (172) T ss_pred HHHHHHHHCCCCCCCCCCCCHHCCEEEEHHHHHCCCCCEEEEECC-----CCCHHHHHHHHHH-HH-HCCCHHHHHHCCC T ss_conf 758988754877564554201025021024554289967988436-----7316899999999-87-4223555201134 Q ss_pred ECCCCCCCCHHHH--HHHHHHHHHHCCCEEEEEECCHHCCCHHHH----HHHCCCCEEEECC Q ss_conf 0244576444433--216887632203138665221000105556----5413783476402 Q gi|254780673|r 254 PNGAAARVAAQHS--QCYAAWYSHVPGLKVVIPYTASDAKGLLKA----AIRDPNPVIFLEN 309 (467) Q Consensus 254 p~G~~~~~g~~Hs--~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~----ai~~~~Pvi~le~ 309 (467) -.+-+. -+|-- --...++. +=++--..|..|.+++.++.. +.+.-.||..|=+ T Consensus 104 ~~~E~i--~AQVpmGr~~~kiLe-~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls 162 (172) T COG4032 104 VLKEGI--EAQVPMGRALPKILE-GLELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLS 162 (172) T ss_pred HHHCCC--CCCCCCCHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 130377--313642121589996-56886314578888887787899999871786599945 No 225 >PRK07789 acetolactate synthase 1 catalytic subunit; Validated Probab=68.45 E-value=8.6 Score=18.09 Aligned_cols=156 Identities=17% Similarity=0.104 Sum_probs=77.4 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC---CCEECCCCCHHHHHHHHHH Q ss_conf 3100000000000000122355443113650699932434458866532364754081---1101166662789989999 Q gi|254780673|r 129 DSSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGC---ERVIDTPITEHGFAGIGIG 205 (467) Q Consensus 129 ~~~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~---~R~~d~pi~E~~~~G~a~G 205 (467) ..++.-....++|-.|++-++|.++.-+ .+|| | +|+. ...|.+..-. =|++.+ --|++...+|-| T Consensus 20 ~~~~~~~~~~~mtgae~lv~~L~~~GV~----~vFG--v--PG~~---~l~l~dal~~~~~i~~V~~-rhE~~A~~mAdg 87 (612) T PRK07789 20 AGRPRHVAPEQMTGAQAVVRSLEELGVD----VVFG--I--PGGA---ILPVYDPLFDSTKLRHVLV-RHEQGAGHAAEG 87 (612) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCC----EEEE--C--CCCC---HHHHHHHHHCCCCCEEECC-CCHHHHHHHHHH T ss_conf 7899888998524999999999987999----9997--9--8845---5999999753699649831-968999999999 Q ss_pred HHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-CCC-CCCCCHHHHHHHHHHHHHHCCCEEE Q ss_conf 8871886445666667-899999999987886742117767888799830-244-5764444332168876322031386 Q gi|254780673|r 206 ASFAGLKPIVEFMTFN-FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP-NGA-AARVAAQHSQCYAAWYSHVPGLKVV 282 (467) Q Consensus 206 ~A~~G~~Piv~~~~~~-f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p-~G~-~~~~g~~Hs~~~~~~~~~iPgl~V~ 282 (467) +|..--||=|.+-++. =.+.++.-|.+- |. -++||++-.. ... ..+.+.++..+...++..+--. .. T Consensus 88 YAR~tG~~gv~~~t~GPG~~Na~~gla~A-----~~----d~~Pvl~I~G~~~~~~~g~~~~qe~d~~~~~~~vtk~-~~ 157 (612) T PRK07789 88 YAQATGRVGVCMATSGPGATNLVTPIADA-----NM----DSVPVVAITGQVGSGLIGTDAFQEADIVGITMPITKH-NF 157 (612) T ss_pred HHHHHCCCEEEEEECCCHHHHHHHHHHHH-----HH----HCCCEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHE-EE T ss_conf 99997899899980681799999999999-----96----0998899968787543789987522488764334401-23 Q ss_pred EEECCHHCCCHHHHHHH-----CCCCEEE Q ss_conf 65221000105556541-----3783476 Q gi|254780673|r 283 IPYTASDAKGLLKAAIR-----DPNPVIF 306 (467) Q Consensus 283 ~P~~~~d~~~ll~~ai~-----~~~Pvi~ 306 (467) ...++.++...+..|++ -++||.. T Consensus 158 ~v~~~~~i~~~l~~A~~~A~~grpGPV~i 186 (612) T PRK07789 158 LVTRAEDIPRVIAEAFHIASTGRPGPVLV 186 (612) T ss_pred EECCHHHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 21899999999999999996189963899 No 226 >KOG1668 consensus Probab=67.92 E-value=2.9 Score=21.42 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=5.9 Q ss_pred HHHCCCEEEEECCC Q ss_conf 98719899995788 Q gi|254780673|r 387 VKKTGRLVTVEEGY 400 (467) Q Consensus 387 v~kt~~~i~vee~~ 400 (467) ++|+.-.++|+++- T Consensus 190 ikKlqi~~vveddk 203 (231) T KOG1668 190 IKKLQIQCVVEDDK 203 (231) T ss_pred EEEEEEEEEEECCC T ss_conf 03688999998375 No 227 >PRK12474 hypothetical protein; Provisional Probab=67.85 E-value=8.8 Score=18.01 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=10.2 Q ss_pred CHHHHHHHHHHHHCCC Q ss_conf 9899999999985020 Q gi|254780673|r 448 NVDEIIESVESICYKR 463 (467) Q Consensus 448 ~~~~I~~av~~v~~~~ 463 (467) +.+++-.++++.+..+ T Consensus 494 ~~~el~~al~~Al~~~ 509 (518) T PRK12474 494 TAEEFSAQYAAAMAQR 509 (518) T ss_pred CHHHHHHHHHHHHCCC T ss_conf 9999999999997399 No 228 >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio Probab=67.71 E-value=8.9 Score=17.99 Aligned_cols=118 Identities=21% Similarity=0.199 Sum_probs=60.1 Q ss_pred CCHHHHCC--CCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE Q ss_conf 36475408--11101166662789989999887188644566666-7899999999987886742117767888799830 Q gi|254780673|r 178 QGLLQEFG--CERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTF-NFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP 254 (467) Q Consensus 178 ~gl~~~fg--~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~-~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p 254 (467) ..|.+.+. .-|++.+- .|+..+++|.|++..+.||=+.+++. -=+..+++.|.|- |+ -+.||++-.. T Consensus 24 ~~l~~~~~~~~i~~i~~~-~E~~A~~~A~g~~~~tg~~~v~~~~~gpG~~n~~~~l~~A-----~~----~~~Pvl~i~g 93 (155) T cd07035 24 LPLLDALARSGIRYILVR-HEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANA-----YL----DSIPLLVITG 93 (155) T ss_pred HHHHHHHHHCCCEEEEEC-CHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-----HH----CCCCEEEEEC T ss_conf 999998650798799878-7799999999999865997599982776888788999999-----98----3898089946 Q ss_pred CCCCCC--CCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH----C-CCCEEE Q ss_conf 244576--444433216887632203138665221000105556541----3-783476 Q gi|254780673|r 255 NGAAAR--VAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR----D-PNPVIF 306 (467) Q Consensus 255 ~G~~~~--~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~-~~Pvi~ 306 (467) .-.... .+.+...+...+|..+- ....-..++.++...+..|++ . ++||.+ T Consensus 94 ~~~~~~~~~~~~q~~d~~~~~~~~~-k~~~~i~~~~~~~~~i~~A~~~a~s~~~gPv~l 151 (155) T cd07035 94 QRPTAGEGRGAFQEIDQVALFRPIT-KWAYRVTSPEEIPEALRRAFRIALSGRPGPVAL 151 (155) T ss_pred CCCHHHHCCCCCCCCCHHHHCCCCC-CEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 8886772755654536476527766-325788999999999999999974598945899 No 229 >pfam07462 MSP1_C Merozoite surface protein 1 (MSP1) C-terminus. This family represents the C-terminal region of merozoite surface protein 1 (MSP1) which are found in a number of Plasmodium species. MSP-1 is a 200-kDa protein expressed on the surface of the P. vivax merozoite. MSP-1 of Plasmodium species is synthesized as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19-kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate. Probab=67.52 E-value=4.9 Score=19.82 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=25.1 Q ss_pred EECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHH Q ss_conf 93243445886653236475408111011666627899 Q gi|254780673|r 163 MGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFA 200 (467) Q Consensus 163 ~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~ 200 (467) ||.|..+..-...|+.|=.+.=.|+-+..-+|+|-..+ T Consensus 339 f~~~ddd~ed~dQV~tGeae~~~~e~il~~~~neyevv 376 (574) T pfam07462 339 FGNDDDDDEDLDQVATGEAESEEMKNILSAFKNEYDVI 376 (574) T ss_pred CCCCCCCCHHHHHHHCCCCCCCCHHHHHCCCCCCCEEE T ss_conf 77886641033120016645655344202577733168 No 230 >TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity. Probab=67.37 E-value=9 Score=17.95 Aligned_cols=150 Identities=19% Similarity=0.146 Sum_probs=77.9 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHH Q ss_conf 223332223322100000011233331000000000000-0012235544311365069993243445886653236475 Q gi|254780673|r 104 KNTTLVFSNEDNDKVDHQKSKNDIQDSSFAHAPTSSITV-REALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQ 182 (467) Q Consensus 104 ~~~s~~~~~a~~~a~~~~~a~~~~~~~~~~~~~~~~~Tv-Rea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~ 182 (467) .......+.+.-+...--.+..+++..-.-.+....+.. .|-|-.++-|+ +||++..+ T Consensus 54 ~~~~e~~~~~~l~~V~IlsTGGTIASrVDYeTGAV~P~ftAeel~~~~PEL-----------~~iAni~a---------- 112 (413) T TIGR02153 54 PPEEEIEKKPELPKVSILSTGGTIASRVDYETGAVKPAFTAEELARAVPEL-----------LEIANIKA---------- 112 (413) T ss_pred CCHHHHCCCCCCCEEEEEECCCEEEEEEEEEECCCCCCCCHHHHHHHCCCH-----------HEECCCCE---------- T ss_conf 672430557788727999828878999730305600453989998617400-----------20124310---------- Q ss_pred HCCCCCEECCCCCHH-------HHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE Q ss_conf 408111011666627-------899899998871886445-666667899999999987886742117767888799830 Q gi|254780673|r 183 EFGCERVIDTPITEH-------GFAGIGIGASFAGLKPIV-EFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP 254 (467) Q Consensus 183 ~fg~~R~~d~pi~E~-------~~~G~a~G~A~~G~~Piv-~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p 254 (467) |.+=.=+||+ .|.--.+..--.|-.=|| .|=| |-.-..||=+.||.-..++.||||. T Consensus 113 -----~~~~niLSENMkP~~W~~IA~~V~~al~~G~~GVVvaHGT--------DTM~YTAaALSFm~~~Gl~~PvVlV-- 177 (413) T TIGR02153 113 -----RAVFNILSENMKPEYWIKIAEAVAKALEEGADGVVVAHGT--------DTMAYTAAALSFMFKTGLPVPVVLV-- 177 (413) T ss_pred -----EEEEHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC--------CHHHHHHHHHHHHHHCCCCCCEEEE-- T ss_conf -----5600010778885899999999999840899538994158--------7468999999999971699988998-- Q ss_pred CCCCCCCCHHHH---------HHHH--HHHH---HHCCCEEEEEECCHHCCCHHHH Q ss_conf 244576444433---------2168--8763---2203138665221000105556 Q gi|254780673|r 255 NGAAARVAAQHS---------QCYA--AWYS---HVPGLKVVIPYTASDAKGLLKA 296 (467) Q Consensus 255 ~G~~~~~g~~Hs---------~~~~--~~~~---~iPgl~V~~P~~~~d~~~ll~~ 296 (467) |+|=| .++. ..++ -|=...|+|=.+.-|.+.++.. T Consensus 178 -------GAQRSSDRPSSDAa~NL~~A~~~A~~a~~aEV~VvMHG~tsD~yc~~HR 226 (413) T TIGR02153 178 -------GAQRSSDRPSSDAALNLIAAVRAATSAPIAEVVVVMHGETSDTYCLVHR 226 (413) T ss_pred -------CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEC T ss_conf -------5743588873137999999999833697100388840124886799965 No 231 >TIGR02876 spore_yqfD sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown .. Probab=66.88 E-value=3.8 Score=20.57 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=18.7 Q ss_pred EEEEECCCCCEEEEEEECCCCCCCCCCCE Q ss_conf 33431777868989982378851326975 Q gi|254780673|r 45 VMEVESIDEGILGKILCPNGTKNVKVNTP 73 (467) Q Consensus 45 t~EV~A~~~G~i~~ilv~eG~e~V~VG~~ 73 (467) -..+-|--||+|.++++..|+-.|..|+. T Consensus 191 p~niVAkk~G~i~~~~v~~G~~~Vk~GD~ 219 (406) T TIGR02876 191 PRNIVAKKDGVIKRVYVTSGEAVVKKGDV 219 (406) T ss_pred CCCEEEECCEEEEEEEEECCEEEECCCCE T ss_conf 72326633408888655111648548887 No 232 >COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism] Probab=66.14 E-value=7 Score=18.73 Aligned_cols=12 Identities=42% Similarity=0.415 Sum_probs=5.1 Q ss_pred HHHCCCEEEEEC Q ss_conf 987198999957 Q gi|254780673|r 387 VKKTGRLVTVEE 398 (467) Q Consensus 387 v~kt~~~i~vee 398 (467) |++-.-+.+++- T Consensus 389 Vk~Gd~l~tiya 400 (435) T COG0213 389 VKKGDPLATIYA 400 (435) T ss_pred ECCCCEEEEEEC T ss_conf 026974799862 No 233 >pfam03358 FMN_red NADPH-dependent FMN reductase. Probab=66.08 E-value=9.5 Score=17.78 Aligned_cols=27 Identities=41% Similarity=0.433 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCC Q ss_conf 888888887531004675279733006 Q gi|254780673|r 349 GMTYATKAAIELEKNGIDAELIDLRTI 375 (467) Q Consensus 349 ~~~~a~~aa~~L~~~gi~~~vid~r~l 375 (467) ....+....+.|.+.|+++++||++.+ T Consensus 16 t~~l~~~~~~~l~~~g~e~~~idl~~~ 42 (147) T pfam03358 16 TRKLAEWAAELLEEAGAEVELIDLADL 42 (147) T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 999999999998776992599632334 No 234 >PRK02458 ribose-phosphate pyrophosphokinase; Provisional Probab=65.94 E-value=9.6 Score=17.76 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=17.7 Q ss_pred CCCCEEECCCCCCCCCCHHH-HHHCCCCHHHH-HHHHHHHHCCC Q ss_conf 89829971777888889667-65608998999-99999985020 Q gi|254780673|r 422 DAPILTITGRDVPMPYAANL-EKLALPNVDEI-IESVESICYKR 463 (467) Q Consensus 422 ~~p~~ri~~~d~p~P~~~~l-e~~~~p~~~~I-~~av~~v~~~~ 463 (467) ++++.+|-.-|+- |....+ .|..+.+...+ -++++++.+.. T Consensus 268 ~s~i~~ivvTnTi-~~~~~~~~ki~vlsva~llAeaI~rih~~~ 310 (323) T PRK02458 268 TAPIKEILVTDSV-KTKERVPKNVTYLSASELIAEAIIRIHERK 310 (323) T ss_pred CCCCCEEEECCCC-CCHHHCCCCCEEEEHHHHHHHHHHHHHCCC T ss_conf 4998689985897-872244898889877999999999986799 No 235 >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional Probab=64.93 E-value=5.7 Score=19.34 Aligned_cols=48 Identities=10% Similarity=0.119 Sum_probs=26.0 Q ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCC Q ss_conf 85799999999987198999957887676789999999996776428982997177 Q gi|254780673|r 376 RPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGR 431 (467) Q Consensus 376 ~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~ 431 (467) --|+.+.+.+.++.-+.=+.+|= .||+.-+=+....+-+-| ..-+++. T Consensus 224 DNms~~~i~~av~~i~~~~~lEa---SGgI~~~ni~~yA~tGVD-----~IS~g~L 271 (290) T PRK06559 224 DNMSLEQIEQAITLIAGRSRIEC---SGNIDMTTISRFRGLAID-----YVSSGSL 271 (290) T ss_pred CCCCHHHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHCCCC-----EEECCHH T ss_conf 79899999999998579679999---789989999999973999-----9988822 No 236 >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim Probab=64.58 E-value=10 Score=17.59 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=57.1 Q ss_pred CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC--CCCCCCHH Q ss_conf 1011666627899899998871886445666667-89999999998788674211776788879983024--45764444 Q gi|254780673|r 188 RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFN-FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNG--AAARVAAQ 264 (467) Q Consensus 188 R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~-f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G--~~~~~g~~ 264 (467) |++.+. .||+..-+|.|+|..--||.+.+.+.. =+..++.-+.|- |. -+.||++-+..- ...+.|.. T Consensus 37 ~~i~~~-hE~~A~~mA~gyar~tgkp~v~~~t~GPG~~N~~~gl~~A-----~~----d~~Pvl~itg~~~~~~~g~g~~ 106 (162) T cd07037 37 RLHVRV-DERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEA-----YY----SGVPLLVLTADRPPELRGTGAN 106 (162) T ss_pred EEEEEC-CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH-----HH----CCCCEEEEECCCCHHHCCCCCC T ss_conf 699536-6778999999999987998799947883588888999987-----53----2998899968997886178988 Q ss_pred HHHHHHHHHHHHCCCE--EEEEECCHH---CCCHHHHHHH-----CCCCEE Q ss_conf 3321688763220313--866522100---0105556541-----378347 Q gi|254780673|r 265 HSQCYAAWYSHVPGLK--VVIPYTASD---AKGLLKAAIR-----DPNPVI 305 (467) Q Consensus 265 Hs~~~~~~~~~iPgl~--V~~P~~~~d---~~~ll~~ai~-----~~~Pvi 305 (467) +..+...+|+.+--.. |-.|.+..| ...+++.|++ -++||. T Consensus 107 Q~~dq~~l~~~itK~s~~v~~~~~~~~~~~i~~~l~~A~~~A~tg~pGPV~ 157 (162) T cd07037 107 QTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVH 157 (162) T ss_pred CCCCHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 643787773655207877688323655789999999999997189999689 No 237 >PTZ00142 6-phosphogluconate dehydrogenase; Provisional Probab=62.12 E-value=11 Score=17.28 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=43.4 Q ss_pred HHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCHHHHCCC--CCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 5544311365069993243445886-6532364754081--110116666278998999988718864456666678999 Q gi|254780673|r 149 AIAEEMRRDKDVFIMGEEVAEYQGA-YKVTQGLLQEFGC--ERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQ 225 (467) Q Consensus 149 a~~e~m~~d~~~~~~gedv~~~~g~-f~~t~gl~~~fg~--~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~ 225 (467) .+...|+. -++++ |-|-. |+-|....++... -+|+|+|+|=. -.| |..| | .+|... --. T Consensus 90 ~L~~~L~~-GDIII------D~GNs~~~dt~rr~~~l~~kgI~fld~GVSGG-----e~G-Ar~G--p--siMvGG-~~~ 151 (474) T PTZ00142 90 NILPHLEK-GDIII------DGGNEWYNNSERRIKLCKEKGILYIGMGVSGG-----EEG-ARYG--P--SLMPGG-NPY 151 (474) T ss_pred HHHHCCCC-CCEEE------ECCCCCHHHHHHHHHHHHHCCCCEECCCCCCC-----HHH-HHCC--C--EECCCC-CHH T ss_conf 99850889-99898------79988865799999999857991864788843-----577-7339--8--213588-688 Q ss_pred HHH---HHHHHH-HHHHHHCCCCCCCCE-EEEEECCCCCCCCHHHHH Q ss_conf 999---999878-867421177678887-998302445764444332 Q gi|254780673|r 226 AID---QIINSA-AKTRYMSGGQITTSI-VFRGPNGAAARVAAQHSQ 267 (467) Q Consensus 226 a~d---qi~n~~-ak~~~~~gg~~~~p~-v~r~p~G~~~~~g~~Hs~ 267 (467) +|+ +|+... || .++ -|. .+-||.|+++..=.-|.. T Consensus 152 a~~~v~Pileaiaak----~~~---~~c~~~~G~~GaGH~vKMVHNG 191 (474) T PTZ00142 152 AYDHVKDIFQACSAK----VGD---SPCCDYVGPGSSGHYVKMVHNG 191 (474) T ss_pred HHHHHHHHHHHHHCC----CCC---CCCEEEECCCCCCHHHHHHCCC T ss_conf 999876899997161----699---9871036898710310010354 No 238 >TIGR02013 rpoB DNA-directed RNA polymerase, beta subunit; InterPro: IPR010243 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry describes orthologues of the beta subunit of bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription. Probab=61.28 E-value=4.4 Score=20.14 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=18.0 Q ss_pred CCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 1110116666278998999988718864456666 Q gi|254780673|r 186 CERVIDTPITEHGFAGIGIGASFAGLKPIVEFMT 219 (467) Q Consensus 186 ~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~ 219 (467) +++|==|=+|=.-+|++|++| .||.|+=. T Consensus 724 ~~~VdyMDVSP~Q~VSVaAaL-----IPFLEHDD 752 (1449) T TIGR02013 724 PDEVDYMDVSPKQIVSVAAAL-----IPFLEHDD 752 (1449) T ss_pred CCCEEEEEECCHHHHHHHHHC-----CCCCCCCH T ss_conf 760247651832355665542-----63323541 No 239 >PRK02597 DNA-directed RNA polymerase subunit beta'; Provisional Probab=61.03 E-value=12 Score=17.16 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=29.0 Q ss_pred EECCCCCEECCCCEEEEEE-------CCCCEEEEECCCCCEE Q ss_conf 7417897625898599995-------3753334317778689 Q gi|254780673|r 22 WKKNEGDLIKQGDIIYEVE-------TDKAVMEVESIDEGIL 56 (467) Q Consensus 22 W~vk~GD~V~~gd~l~eiE-------TDKat~EV~A~~~G~i 56 (467) .+|+.|+.|+.+|+|+||- |+|+.-+|-|..+|-+ T Consensus 410 L~V~n~q~V~~~qvIAEi~a~~~~~~~Ek~~K~I~sd~~GEv 451 (1295) T PRK02597 410 LFVDDGQTVEADQTLAEIAAGAVKKSTEKATKDVICDLAGEV 451 (1295) T ss_pred EEEECCCEEECCCEEEEEECCCCCCCEEEEEEEEEECCCCEE T ss_conf 999899698427389999537631112666322672577559 No 240 >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Probab=60.54 E-value=12 Score=17.10 Aligned_cols=105 Identities=22% Similarity=0.274 Sum_probs=50.3 Q ss_pred CCCCCHH--HHHHHHHHHHHCCCCCHHHHHHH-HH-HHH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC-HH Q ss_conf 1666627--89989999887188644566666-78-999-9999998788674211776788879983024457644-44 Q gi|254780673|r 191 DTPITEH--GFAGIGIGASFAGLKPIVEFMTF-NF-AMQ-AIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVA-AQ 264 (467) Q Consensus 191 d~pi~E~--~~~G~a~G~A~~G~~Piv~~~~~-~f-~~~-a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g-~~ 264 (467) +.+|.-| ..+|.|-.+-+.|.+.-|.+-+| |= ..+ .|-.-+|-|+- +++|+||..-+-. |..+ +. T Consensus 135 ~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v--------~klPvvf~ieNN~-yAiSvp~ 205 (358) T COG1071 135 SGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAV--------WKLPVVFVIENNQ-YAISVPR 205 (358) T ss_pred CCEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHH--------HCCCEEEEEECCC-CEEECCH T ss_conf 840466534799999999974899818999945786553339999899998--------5698799996687-1670456 Q ss_pred HHHHHHHHHH------HHCCCEEEEEECCHHCCCHH---HHH----HHCCCCEEEECC Q ss_conf 3321688763------22031386652210001055---565----413783476402 Q gi|254780673|r 265 HSQCYAAWYS------HVPGLKVVIPYTASDAKGLL---KAA----IRDPNPVIFLEN 309 (467) Q Consensus 265 Hs~~~~~~~~------~iPgl~V~~P~~~~d~~~ll---~~a----i~~~~Pvi~le~ 309 (467) ..|+-...++ .|||++| |..|.-.++ +.| .+-.+|+++ |. T Consensus 206 ~~q~~~~~~~~ra~aygipgv~V----DG~D~~avy~~~~~A~e~AR~g~GPtLI-E~ 258 (358) T COG1071 206 SRQTAAEIIAARAAAYGIPGVRV----DGNDVLAVYEAAKEAVERARAGEGPTLI-EA 258 (358) T ss_pred HHCCCCHHHHHHHHCCCCCEEEE----CCCCHHHHHHHHHHHHHHHHCCCCCEEE-EE T ss_conf 64033246775501058872787----7977999999999999999748998899-99 No 241 >COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion] Probab=60.45 E-value=12 Score=17.09 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=14.1 Q ss_pred CEEEEHHHHHHHHHHHHHHHHCCCC Q ss_conf 4586025788888888753100467 Q gi|254780673|r 341 VTIISFGIGMTYATKAAIELEKNGI 365 (467) Q Consensus 341 itii~~G~~~~~a~~aa~~L~~~gi 365 (467) .+-++||.+.+.|.-++.-...-|| T Consensus 611 AcgvAWGaySqkaasiatG~nr~GI 635 (772) T COG1152 611 ACGVAWGAYSQKAASIATGCNRWGI 635 (772) T ss_pred EEEEEEHHHHHHHHHHHCCCCCCCC T ss_conf 0478400344788988628631177 No 242 >PRK08617 acetolactate synthase; Reviewed Probab=60.38 E-value=12 Score=17.08 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=10.1 Q ss_pred CCHHHHHHHHHHHHCCC Q ss_conf 99899999999985020 Q gi|254780673|r 447 PNVDEIIESVESICYKR 463 (467) Q Consensus 447 p~~~~I~~av~~v~~~~ 463 (467) -+.+++-+++++....+ T Consensus 510 ~~~~eL~~al~~A~~~~ 526 (552) T PRK08617 510 TSPDELEPVLKEALATD 526 (552) T ss_pred CCHHHHHHHHHHHHHCC T ss_conf 99999999999998189 No 243 >TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component; InterPro: IPR010199 This entry describes an NADPH-dependent sulphite reductase flavoprotein subunit. Most members of the proteins of this entry are found in Cys biosynthesis gene clusters. The closest homologues are designated as subunits nitrate reductase.; GO: 0004783 sulfite reductase (NADPH) activity, 0000103 sulfate assimilation, 0019344 cysteine biosynthetic process. Probab=60.31 E-value=12 Score=17.07 Aligned_cols=93 Identities=20% Similarity=0.248 Sum_probs=53.3 Q ss_pred CCCCCEEEEHHHHHHHHHHHH-----HHHH--------CCCCCEEEEECCC--CCC--CCH--HHHHHHHHH-CCCE--- Q ss_conf 168745860257888888887-----5310--------0467527973300--685--799--999999987-1989--- Q gi|254780673|r 337 QGSDVTIISFGIGMTYATKAA-----IELE--------KNGIDAELIDLRT--IRP--MDW--QTIFESVKK-TGRL--- 393 (467) Q Consensus 337 ~G~ditii~~G~~~~~a~~aa-----~~L~--------~~gi~~~vid~r~--l~P--ld~--~~i~~sv~k-t~~~--- 393 (467) .-..+|-++=.-.-..|.-+. +++. .-=.+..||||-. =.| .++ +.++..+++ |=|| T Consensus 340 ~~fELT~~t~~~~~~yA~~~~~~~L~~l~~P~~~~~L~~y~~~~~~~D~~~ny~~Pap~~l~a~~li~lLRPL~PRLYSI 419 (628) T TIGR01931 340 SHFELTQLTKPLVKAYAELTGNEELKALIAPEDKEKLKAYIANTPLVDLVRNYDYPAPADLDAEQLISLLRPLTPRLYSI 419 (628) T ss_pred HCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH T ss_conf 05760104878999999876563107560787558999997359878997224789986359799999747788511218 Q ss_pred ------------EEEEC-------CCCCCCHHHHHHHHHHHHH-----------HH---HCCCCCEEEC Q ss_conf ------------99957-------8876767899999999967-----------76---4289829971 Q gi|254780673|r 394 ------------VTVEE-------GYPQSSVGSTIANQVQRKV-----------FD---YLDAPILTIT 429 (467) Q Consensus 394 ------------i~vee-------~~~~gg~g~~i~~~i~e~~-----------f~---~L~~p~~ri~ 429 (467) |||.. ..+.||-++-+++++.+.. |. .-|.||+-|| T Consensus 420 aSSq~ev~dEVHlTVg~V~y~~~G~~r~GgaS~fLA~rl~~gd~v~vyve~N~nFRLP~d~dtPiIMIG 488 (628) T TIGR01931 420 ASSQAEVDDEVHLTVGVVRYEAEGRARLGGASGFLAERLEEGDTVKVYVERNDNFRLPEDPDTPIIMIG 488 (628) T ss_pred HHHHHHCCCEEEEEEEEEEEEECCEEEECCCHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEC T ss_conf 889865688068876688982056477441057788650889767788751778888888897878736 No 244 >CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed Probab=60.22 E-value=12 Score=17.06 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=30.1 Q ss_pred EEECCCCCEECCCCEEEEEE--------CCCCEEEEECCCCCEE Q ss_conf 77417897625898599995--------3753334317778689 Q gi|254780673|r 21 KWKKNEGDLIKQGDIIYEVE--------TDKAVMEVESIDEGIL 56 (467) Q Consensus 21 ~W~vk~GD~V~~gd~l~eiE--------TDKat~EV~A~~~G~i 56 (467) =.+|+.|+.|+.+|+|+|+- ++|+.-+|-|..+|-+ T Consensus 408 lL~V~n~q~V~s~QvIAEi~~~~~~~~~~Ek~~K~i~S~~~GEv 451 (1350) T CHL00117 408 LLLVQNDQYVESEQVIAEIRAGTSTLKFKEKVRKHIYSDSEGEM 451 (1350) T ss_pred EEEEECCCEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCCCE T ss_conf 89998995875161899970577755453058877754886426 No 245 >PRK08155 acetolactate synthase catalytic subunit; Validated Probab=59.78 E-value=12 Score=17.01 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=10.7 Q ss_pred CHHHHHHHHHHHHCCC Q ss_conf 9899999999985020 Q gi|254780673|r 448 NVDEIIESVESICYKR 463 (467) Q Consensus 448 ~~~~I~~av~~v~~~~ 463 (467) +.+++-.++++.+..+ T Consensus 518 ~~~el~~al~~al~~~ 533 (564) T PRK08155 518 NEADPQAALQEAINRP 533 (564) T ss_pred CHHHHHHHHHHHHCCC T ss_conf 9999999999997589 No 246 >COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion] Probab=58.32 E-value=13 Score=16.84 Aligned_cols=14 Identities=36% Similarity=0.313 Sum_probs=7.8 Q ss_pred CEEEEECCCCCCCC Q ss_conf 52797330068579 Q gi|254780673|r 366 DAELIDLRTIRPMD 379 (467) Q Consensus 366 ~~~vid~r~l~Pld 379 (467) +++|||..+.-|.- T Consensus 36 ~v~vid~Gt~~~~l 49 (160) T COG0680 36 NVEVIDGGTAGPNL 49 (160) T ss_pred CEEEEECCCCCHHH T ss_conf 73899768770889 No 247 >cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine. Probab=57.93 E-value=13 Score=16.80 Aligned_cols=40 Identities=28% Similarity=0.253 Sum_probs=34.1 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCC Q ss_conf 88888875310046752797330068579999999998719 Q gi|254780673|r 351 TYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTG 391 (467) Q Consensus 351 ~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~ 391 (467) ..|.+|.+-|.++||+.+.+|++ -.|++.+.|.+.+++.| T Consensus 10 stcrkA~k~L~~~~i~~~~~d~~-~~p~~~~el~~~~~~~G 49 (105) T cd03035 10 DTVKKARKWLEARGVAYTFHDYR-KDGLDAATLERWLAKVG 49 (105) T ss_pred HHHHHHHHHHHHCCCCCEEEEEE-CCCCCHHHHHHHHHHCC T ss_conf 78999999999879980899756-78989999999998679 No 248 >TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport. Probab=57.33 E-value=13 Score=16.73 Aligned_cols=111 Identities=21% Similarity=0.322 Sum_probs=68.6 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH Q ss_conf 00000000122355443113650699932434458866532364754081110116666278998999988718864456 Q gi|254780673|r 137 TSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE 216 (467) Q Consensus 137 ~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~ 216 (467) .+..+=-|.-|-|++.++.+||.+.++.|= |-|| |-|-. +..|-+==+||..|..-|+. T Consensus 173 ~KGlSGGErKRLafA~E~ltdP~~LFcDEP----------TSGL-DSfmA----------~~Vv~~L~~LA~~G~tiI~t 231 (671) T TIGR00955 173 VKGLSGGERKRLAFASELLTDPIILFCDEP----------TSGL-DSFMA----------YSVVQVLKGLAQKGKTIICT 231 (671) T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEECCC----------CCHH-HHHHH----------HHHHHHHHHHHCCCCEEEEE T ss_conf 455201136789988788718942650388----------9534-59999----------99999999985089799998 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCHHC Q ss_conf -666678999999999878867421177678887998302445764444332168876322-03138665221000 Q gi|254780673|r 217 -FMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHV-PGLKVVIPYTASDA 290 (467) Q Consensus 217 -~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~i-Pgl~V~~P~~~~d~ 290 (467) ||--.=++.-|||| ..|+.|+ ++++| -|+|+ -.+|+.+ |...+=.-.||+|. T Consensus 232 IHQPSs~lF~lFd~i-------~lla~Gr----vvy~G--------~p~~a---~~FF~~~Gpd~~cP~~yNPADF 285 (671) T TIGR00955 232 IHQPSSELFELFDKI-------ILLAEGR----VVYLG--------SPDQA---VPFFSELGPDFPCPENYNPADF 285 (671) T ss_pred EECCCHHHHHHHCCE-------EEEECCE----EEEEC--------CCHHH---HHHHHHCCCCCCCCCCCCCHHH T ss_conf 305618898511716-------7752772----79827--------81036---8989844888789788888889 No 249 >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Probab=55.65 E-value=14 Score=16.55 Aligned_cols=26 Identities=35% Similarity=0.077 Sum_probs=14.9 Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 66278998999988718864456666 Q gi|254780673|r 194 ITEHGFAGIGIGASFAGLKPIVEFMT 219 (467) Q Consensus 194 i~E~~~~G~a~G~A~~G~~Piv~~~~ 219 (467) -.||+...+|-|+|..--||=|.+-+ T Consensus 67 rhE~~A~~aAdGYAR~tGk~gv~~~T 92 (615) T PRK07418 67 RHEQGAAHAADGYARATGKVGVCFGT 92 (615) T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 97899999999999997999899964 No 250 >TIGR00072 hydrog_prot hydrogenase maturation protease; InterPro: IPR000671 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised . More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin and archaean preflagellin have been described , . Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. Metalloproteases are the most diverse of the four main types of protease, with more than 30 families identified to date . In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as abXHEbbHbc, where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesized as a precursor devoid of the metalloenzyme active site. This precursor undergoes a complex post-translational maturation process that requires a number of accessory proteins , , . At one step of this process, after nickel incorporation, each hydrogenase isoenzyme is processed by proteolytic cleavage at the C-terminal end by the corresponding hydrogenase maturation endopeptidase . For example, Escherichia coli HycI is involved in processing of pre-HycE (the large subunit of hydrogenase 3) , ; HybD is involved in processing of pre-HybC (the large subunit of hydrogenase 2) ; and HyaD is assumed to be involved in processing of the large subunit of hydrogenase 1. This group represents metallopeptidases of the MEROPS peptidase family A31 (HybD endopeptidase family, clan AE). The cleavage site is after a His or an Arg, liberating a short peptide , . This cleavage occurs only in the presence of nickel, and the endopeptidase probably uses the metal in the large subunit of [NiFe]-hydrogenases as a recognition motif . There is no direct evidence for the active site or substrate-binding site, but there are predictions based on an available structure . Nomenclature note: the following names are used in different organisms for members of this group: HycI, HybD, HyaD, HoxM, HoxW, HupD, HynC, HupM, VhoD, VhtD . Gene/protein names are sometimes used interchangeably to designate various "hydrogenase cluster" proteins unrelated to each other in various organisms. For example, the following names are used for members of this group, but also for unrelated proteins: HupD is used in Azotobacter chroococcum and Anabaena sp. to designate an unrelated hydrogenase maturation factor; HydD is used to designate hydrogenase structural genes in Thermococcus litoralis, Pyrococcus abyssi, and other species.; GO: 0008047 enzyme activator activity, 0008233 peptidase activity. Probab=54.86 E-value=15 Score=16.46 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=13.8 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE Q ss_conf 52797330068579999999998719899995 Q gi|254780673|r 366 DAELIDLRTIRPMDWQTIFESVKKTGRLVTVE 397 (467) Q Consensus 366 ~~~vid~r~l~Pld~~~i~~sv~kt~~~i~ve 397 (467) +++|||.-|.-+-....|. +. +++|+|+|| T Consensus 39 nv~~iDgGt~g~~l~~~l~-~~-~~~~~iivD 68 (170) T TIGR00072 39 NVEVIDGGTGGLDLLGLLE-EA-DPKKVIIVD 68 (170) T ss_pred EEEEEECCCCCHHHHHHHH-HC-CCCEEEEEE T ss_conf 2899806657866788774-15-885789997 No 251 >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level HMM (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Probab=54.71 E-value=15 Score=16.44 Aligned_cols=15 Identities=33% Similarity=0.487 Sum_probs=10.3 Q ss_pred HHHHHHCCCEEEEEE Q ss_conf 876322031386652 Q gi|254780673|r 271 AWYSHVPGLKVVIPY 285 (467) Q Consensus 271 ~~~~~iPgl~V~~P~ 285 (467) ..++..|||.++.-+ T Consensus 187 K~l~~ppGl~~v~~~ 201 (355) T TIGR03301 187 KCLEGVPGFGFVIAR 201 (355) T ss_pred CCCCCCCCEEEEEEC T ss_conf 556788875788866 No 252 >COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Probab=54.44 E-value=15 Score=16.42 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=59.5 Q ss_pred CCEEEEHHHHHHHHHHHHHHHH---CCC-CCEEEEECCCCCCCCHHH---------HHHHHHHCCCEEEEECCCCCCCHH Q ss_conf 7458602578888888875310---046-752797330068579999---------999998719899995788767678 Q gi|254780673|r 340 DVTIISFGIGMTYATKAAIELE---KNG-IDAELIDLRTIRPMDWQT---------IFESVKKTGRLVTVEEGYPQSSVG 406 (467) Q Consensus 340 ditii~~G~~~~~a~~aa~~L~---~~g-i~~~vid~r~l~Pld~~~---------i~~sv~kt~~~i~vee~~~~gg~g 406 (467) |+-|=---+.+..|+..|+.+- .+| |.-.-+-=.+|-|-...- -.+++-+-+|+|+||++...|--. T Consensus 285 DvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDDSIVRGTTs 364 (470) T COG0034 285 DVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDDSIVRGTTS 364 (470) T ss_pred CEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCH T ss_conf 57983498876899999998399655552102324346668867887750303037017885897699972651457669 Q ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCCH Q ss_conf 999999999677642898299717778--888896 Q gi|254780673|r 407 STIANQVQRKVFDYLDAPILTITGRDV--PMPYAA 439 (467) Q Consensus 407 ~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~~ 439 (467) ..|...+-+-+-. ---.|+++|.+ |++|+- T Consensus 365 r~IV~mlReAGAk---EVHvriasP~i~~Pc~YGI 396 (470) T COG0034 365 RRIVQMLREAGAK---EVHVRIASPPIRYPCFYGI 396 (470) T ss_pred HHHHHHHHHHCCC---EEEEEECCCCCCCCCCCCC T ss_conf 9999999971887---8899842897567786645 No 253 >pfam02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain. Probab=53.64 E-value=15 Score=16.33 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=50.4 Q ss_pred CCCCEECCCCCH--HHHHHHHHHHHHCC-CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC Q ss_conf 811101166662--78998999988718-86445666-667899999999987886742117767888799830244576 Q gi|254780673|r 185 GCERVIDTPITE--HGFAGIGIGASFAG-LKPIVEFM-TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR 260 (467) Q Consensus 185 g~~R~~d~pi~E--~~~~G~a~G~A~~G-~~Piv~~~-~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~ 260 (467) .|.|++..+-.- -.-++.|+|++++- -|+++.+. ...|.+.. |=+..+++ .++|+++..-.-..++ T Consensus 17 ~p~~~~~~~~~g~mG~~~p~AiGa~~a~p~~~vi~i~GDG~f~~~~--~el~Ta~~--------~~~~i~~iv~nN~~yg 86 (150) T pfam02775 17 PPRRYLTSGGLGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQMNG--QELATAVR--------YNLPITVVVLNNGGYG 86 (150) T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHCCC--CHHHHHHH--------HCCCCCEEEEECCHHH T ss_conf 9990884898732322899999999978998499998897211134--37999998--------4888568999764258 Q ss_pred C-----------------CHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE Q ss_conf 4-----------------444332168876322031386652210001055565413783476 Q gi|254780673|r 261 V-----------------AAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF 306 (467) Q Consensus 261 ~-----------------g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~ 306 (467) . ...+.-++..+-... |.....-.+..|.+..++.+++.++|+++ T Consensus 87 ~~~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gP~~i 148 (150) T pfam02775 87 MTRGQQTPFGGKRYSGPDGDLPPVDFAKLAEAY-GAKGARVESPEELEEALKEALAHDGPALI 148 (150) T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHCCCCEEE T ss_conf 889998874299745656788887899999985-98699978999999999999828999899 No 254 >PRK08327 acetolactate synthase catalytic subunit; Validated Probab=53.34 E-value=15 Score=16.30 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=8.3 Q ss_pred CHHHHHHHHHHHHHCCCCC Q ss_conf 6278998999988718864 Q gi|254780673|r 195 TEHGFAGIGIGASFAGLKP 213 (467) Q Consensus 195 ~E~~~~G~a~G~A~~G~~P 213 (467) -|++...+|-|+|...-|| T Consensus 58 hE~~A~~mAdgyar~tg~~ 76 (568) T PRK08327 58 HEIVAIAMAIGYALGTGKP 76 (568) T ss_pred CHHHHHHHHHHHHHHHCCC T ss_conf 6899999999999985998 No 255 >TIGR00354 polC DNA polymerase II, large subunit DP2; InterPro: IPR004475 This family represents the large subunit, DP2, of a two subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0006308 DNA catabolic process. Probab=53.18 E-value=9 Score=17.95 Aligned_cols=109 Identities=23% Similarity=0.263 Sum_probs=65.8 Q ss_pred CEEEEECCCCCCC-CCCCCCCCHHHHC-CCCCEECCCCCHHHHHHHHHHHHH------CC----CCCHH---HHHHH--- Q ss_conf 0699932434458-8665323647540-811101166662789989999887------18----86445---66666--- Q gi|254780673|r 159 DVFIMGEEVAEYQ-GAYKVTQGLLQEF-GCERVIDTPITEHGFAGIGIGASF------AG----LKPIV---EFMTF--- 220 (467) Q Consensus 159 ~~~~~gedv~~~~-g~f~~t~gl~~~f-g~~R~~d~pi~E~~~~G~a~G~A~------~G----~~Piv---~~~~~--- 220 (467) +|+ +-||.|+|- -|=+.-..|++|| .=+||+|+=--|.-+=.+-+|||= -| |--+. .|-+| T Consensus 842 DVi-ipescAeYlvrVANFiDDLLekFYk~ErFYNvK~~EDLiGHLviGlAPHTSAgvlGRIIGft~a~agYAHPYFHaA 920 (1173) T TIGR00354 842 DVI-IPESCAEYLVRVANFIDDLLEKFYKLERFYNVKKKEDLIGHLVIGLAPHTSAGVLGRIIGFTDASAGYAHPYFHAA 920 (1173) T ss_pred CEE-ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHCCEEEECCCCEECCCCCHHHC T ss_conf 167-4671201265454356577787632576436664324100121015730001232000211462100247650201 Q ss_pred ---------HHHHHHHHHHHHHHHHHH-HHCCCCCCCCEEEEEECCCCCCCCHHHHHH Q ss_conf ---------789999999998788674-211776788879983024457644443321 Q gi|254780673|r 221 ---------NFAMQAIDQIINSAAKTR-YMSGGQITTSIVFRGPNGAAARVAAQHSQC 268 (467) Q Consensus 221 ---------~f~~~a~dqi~n~~ak~~-~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~ 268 (467) |-.|+=+|-+.|---|+. ---|||+++|+|+-+..-.-==++-.|..+ T Consensus 921 KRRNCDgDEDsfmLLLDalLNFSkkfLPdkRGGqMDAPLVLtti~DP~EvD~EvHN~D 978 (1173) T TIGR00354 921 KRRNCDGDEDSFMLLLDALLNFSKKFLPDKRGGQMDAPLVLTTIVDPKEVDDEVHNMD 978 (1173) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHCCCCCCCCH T ss_conf 3568896056899999888732365477878797563245301247033087636602 No 256 >PRK07064 hypothetical protein; Provisional Probab=53.13 E-value=16 Score=16.28 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=6.5 Q ss_pred CHHHHHHHHHHHHC Q ss_conf 98999999999850 Q gi|254780673|r 448 NVDEIIESVESICY 461 (467) Q Consensus 448 ~~~~I~~av~~v~~ 461 (467) +.+++-+++++-+. T Consensus 503 ~~~eL~~al~~A~~ 516 (544) T PRK07064 503 SADDFEAVLREALA 516 (544) T ss_pred CHHHHHHHHHHHHH T ss_conf 99999999999982 No 257 >TIGR03257 met_CoM_red_bet methyl-coenzyme M reductase, beta subunit. Members of this protein family are the beta subunit of methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). This enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Probab=52.94 E-value=13 Score=16.77 Aligned_cols=12 Identities=25% Similarity=-0.233 Sum_probs=4.7 Q ss_pred HHHHHHHHHHHH Q ss_conf 888888887531 Q gi|254780673|r 349 GMTYATKAAIEL 360 (467) Q Consensus 349 ~~~~a~~aa~~L 360 (467) +.+.|..||-.| T Consensus 297 ~lWNAYaaAG~~ 308 (433) T TIGR03257 297 PKWNAYAAAGLV 308 (433) T ss_pred HHHHHHHHHHHH T ss_conf 999999987778 No 258 >pfam01551 Peptidase_M23 Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins, for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown. Probab=52.42 E-value=11 Score=17.37 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=38.5 Q ss_pred EEEECCCCCC---CCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC Q ss_conf 3566788888---8115789877417897625898599995375333431777868989982378851326975899943 Q gi|254780673|r 3 ILVTMPSLSP---TMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ 79 (467) Q Consensus 3 ~ei~mP~lge---sm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ 79 (467) ++|..|. |. ++..|+|..+--..+ .--.+.|+.+.-..-+- +-|.++.++.|+ .|..|++|+.+.. T Consensus 6 iDi~~~~-G~~V~A~~~G~V~~~~~~~~-----~G~~v~i~h~~g~~~~Y----~hl~~~~V~~G~-~V~~G~~IG~~G~ 74 (96) T pfam01551 6 IDIAAPT-GTPVYAAADGVVVFAGYLGG-----YGNLVIIDHGNGYETLY----AHLSKILVKVGQ-RVKAGQVIGTVGS 74 (96) T ss_pred EEECCCC-CCEEEEEECEEEEEEEECCC-----CCEEEEEEECCCCEEEE----CCCEEEEECCCC-CHHHCCEEEEECC T ss_conf 9846589-99899623679999898399-----88599999389876998----364467795898-9013999998678 Q ss_pred CC Q ss_conf 77 Q gi|254780673|r 80 EG 81 (467) Q Consensus 80 eg 81 (467) .+ T Consensus 75 sg 76 (96) T pfam01551 75 TG 76 (96) T ss_pred CC T ss_conf 99 No 259 >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ Probab=51.62 E-value=16 Score=16.12 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=61.2 Q ss_pred CCHHHHC---CCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE Q ss_conf 3647540---8111011666627899899998871886445666667899999999987886742117767888799830 Q gi|254780673|r 178 QGLLQEF---GCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP 254 (467) Q Consensus 178 ~gl~~~f---g~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p 254 (467) ..|.+.+ +.-|++.+- .|++...+|-|+|...-||-+.+-+. ..+.-..++.++.- |+ -+.||++-.. T Consensus 27 ~~l~~al~~~~~i~~i~~r-hE~~A~~mA~gyar~tg~~gv~~~t~---GpG~tN~~~gl~~A-~~----~~~Pll~i~g 97 (164) T cd07039 27 NGLMDALRREGKIEFIQVR-HEEAAAFAASAEAKLTGKLGVCLGSS---GPGAIHLLNGLYDA-KR----DRAPVLAIAG 97 (164) T ss_pred HHHHHHHHHCCCCEEEEEC-CHHHHHHHHHHHHHHHCCCEEEEEEC---CCHHHHHHHHHHHH-HH----CCCCEEEEEC T ss_conf 9999999865997399548-78999999999999979987999842---82388899999999-98----5897799966 Q ss_pred CCC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEE Q ss_conf 244--576444433216887632203138665221000105556541----378347 Q gi|254780673|r 255 NGA--AARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVI 305 (467) Q Consensus 255 ~G~--~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi 305 (467) .-. ..+.+.++.-+...+|..+--.. ....++.++...++.|++ ..+||. T Consensus 98 ~~~~~~~~~~~~Q~~d~~~~~~~~tK~~-~~v~~~~~~~~~~~~A~~~A~~~~GPV~ 153 (164) T cd07039 98 QVPTDELGTDYFQEVDLLALFKDVAVYN-ETVTSPEQLPELLDRAIRTAIAKRGVAV 153 (164) T ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHCEE-EECCCHHHHHHHHHHHHHHHCCCCCCEE T ss_conf 7755434899874274999989974578-8859999999999999998540899999 No 260 >pfam11160 DUF2945 Protein of unknown function (DUF2945). This family of proteins has no known function. Probab=51.61 E-value=16 Score=16.11 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=27.0 Q ss_pred CCCCCEEEEEEEECCCCCE------ECCCCEEEEEECCCC Q ss_conf 8881157898774178976------258985999953753 Q gi|254780673|r 11 SPTMTEGNIAKWKKNEGDL------IKQGDIIYEVETDKA 44 (467) Q Consensus 11 gesm~eG~i~~W~vk~GD~------V~~gd~l~eiETDKa 44 (467) ..+.+.|+|.+-+-++.+. -+.||+=+|||+||. T Consensus 9 ~~g~~~G~V~~~~T~~~~~~G~~v~AS~ddPqYeV~SdkT 48 (62) T pfam11160 9 EAGEVSGKIVKVHTEDTEYKGRTVRASEDDPQYEVESDKT 48 (62) T ss_pred CCCEEEEEEEEEECCCCEECCEEEECCCCCCEEEEEECCC T ss_conf 9966868999998377288885876797898489885687 No 261 >PRK09107 acetolactate synthase 3 catalytic subunit; Validated Probab=51.54 E-value=16 Score=16.11 Aligned_cols=14 Identities=21% Similarity=0.562 Sum_probs=9.7 Q ss_pred CCCCHHHHHHCCCC Q ss_conf 88896676560899 Q gi|254780673|r 435 MPYAANLEKLALPN 448 (467) Q Consensus 435 ~P~~~~le~~~~p~ 448 (467) +|.+..+++-.+|+ T Consensus 562 ~~~g~~~~~~~~~~ 575 (594) T PRK09107 562 IPSGKAHNEMLLPD 575 (594) T ss_pred CCCCCCHHHHCCCC T ss_conf 99889898824882 No 262 >PRK07308 flavodoxin; Validated Probab=51.45 E-value=17 Score=16.10 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=32.3 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH Q ss_conf 57888888887531004675279733006857999999999871989999578876767899999 Q gi|254780673|r 347 GIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIAN 411 (467) Q Consensus 347 G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~ 411 (467) |+.-..|...++.|...|+.++|.++..+.+.|. .+...+|++--.|-.|-+-..... T Consensus 13 Gnae~~A~~i~~~l~~~G~~v~v~~~~~~~~~~l-------~~~~~~ii~tsT~G~Ge~Pd~~~~ 70 (147) T PRK07308 13 GNTEEIADIVADKLQELGHDVDVDECTTVDASDF-------EDADIAIVATYTYGDGDLPDEIVD 70 (147) T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH-------CCCCEEEEEECCCCCCCCCHHHHH T ss_conf 2799999999999997599407611364997686-------118879999557899978734999 No 263 >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Probab=51.45 E-value=17 Score=16.10 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=21.7 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC Q ss_conf 1223554431136506999324344588665323647540811101166 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP 193 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p 193 (467) .++++.........-+++.|..+. ..+++..-..|.+++| -.|+.|+ T Consensus 196 ~i~~a~~~L~~A~rPvIl~G~g~~-~~~a~~~l~~lae~l~-~Pv~tt~ 242 (562) T PRK06048 196 QIKRAAEEIANACRPVIYAGGGVI-SSNASAELVELAETLN-APVTTTL 242 (562) T ss_pred HHHHHHHHHHHCCCCEEEECCCCC-CCHHHHHHHHHHHHHC-CCEEECC T ss_conf 999999999827997899577645-1228999999999859-8878633 No 264 >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. Probab=50.76 E-value=17 Score=16.02 Aligned_cols=14 Identities=7% Similarity=0.444 Sum_probs=7.1 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 99899999999985 Q gi|254780673|r 447 PNVDEIIESVESIC 460 (467) Q Consensus 447 p~~~~I~~av~~v~ 460 (467) -+.+++-.++++.. T Consensus 501 ~~~~eL~~al~~a~ 514 (539) T TIGR03393 501 SEAEQLADVLEKVA 514 (539) T ss_pred CCHHHHHHHHHHHH T ss_conf 89999999999998 No 265 >TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing; InterPro: IPR005855 Glucosamine:fructose-6-phosphate aminotransferase (2.6.1.16 from EC) catalyses the formation of glucosamine 6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. The final product of the hexosamine pathway, UDP-N-acetyl glucosamine, is an active precursor of numerous macromolecules containing amino sugars. This family of sequences belong to the MEROPS peptidase family C44 (clan PB(C)), and are classified as non-peptidase homologs.; GO: 0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity, 0016051 carbohydrate biosynthetic process, 0005737 cytoplasm. Probab=50.68 E-value=17 Score=16.08 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=22.0 Q ss_pred CEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEE Q ss_conf 114443168745860257888888887531004-67527973 Q gi|254780673|r 331 RARIHRQGSDVTIISFGIGMTYATKAAIELEKN-GIDAELID 371 (467) Q Consensus 331 k~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid 371 (467) ....+++=+.|+||+||+..+-.|-+...++.- +|-|+|.= T Consensus 298 ~~~~l~~~~~I~IvACGTSYHAGLv~kY~iE~lA~iPv~Ve~ 339 (628) T TIGR01135 298 AEELLKNIDRIQIVACGTSYHAGLVAKYLIERLAGIPVEVEV 339 (628) T ss_pred CHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 123431555689995401688999999999986189728998 No 266 >PRK07524 hypothetical protein; Provisional Probab=50.41 E-value=17 Score=15.99 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=10.1 Q ss_pred CHHHHHHHHHHHHCCC Q ss_conf 9899999999985020 Q gi|254780673|r 448 NVDEIIESVESICYKR 463 (467) Q Consensus 448 ~~~~I~~av~~v~~~~ 463 (467) +.+++-+++++.+..+ T Consensus 504 ~~~el~~al~~al~~~ 519 (534) T PRK07524 504 DLDQLQAALRAAFARP 519 (534) T ss_pred CHHHHHHHHHHHHCCC T ss_conf 9999999999998089 No 267 >TIGR00874 talAB transaldolase; InterPro: IPR004730 Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate. Transaldolase is evolutionary related to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0004801 transaldolase activity, 0006098 pentose-phosphate shunt, 0005737 cytoplasm. Probab=50.29 E-value=6.9 Score=18.77 Aligned_cols=58 Identities=34% Similarity=0.364 Sum_probs=38.5 Q ss_pred HHHHHHHHHHHHHH-CCCCCEEEEEC--------------CCCCCCCHHHHHHHHH-HCC-CEEEEECCCCCCCHH Q ss_conf 78888888875310-04675279733--------------0068579999999998-719-899995788767678 Q gi|254780673|r 348 IGMTYATKAAIELE-KNGIDAELIDL--------------RTIRPMDWQTIFESVK-KTG-RLVTVEEGYPQSSVG 406 (467) Q Consensus 348 ~~~~~a~~aa~~L~-~~gi~~~vid~--------------r~l~Pld~~~i~~sv~-kt~-~~i~vee~~~~gg~g 406 (467) ..+++-.+||+.|+ ++||+|.+==| .-|+|| .--|++=-+ .++ +==.+|++.-.-|+. T Consensus 136 ASTWeGI~AAe~LE~~~GI~CNlTLLFs~~QA~AcAeA~VtLISPF-VGRIlDWYka~~g~k~Y~~~~DPGV~SV~ 210 (324) T TIGR00874 136 ASTWEGIRAAEELEVKEGIHCNLTLLFSFVQAIACAEAKVTLISPF-VGRILDWYKASTGKKEYSIEEDPGVASVK 210 (324) T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEECCC-HHHHHHHHHHCCCCCCCCCCCCCCCCCHH T ss_conf 8761478999998874796402288877999999865686676683-44466688643788898644577522257 No 268 >PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated Probab=50.05 E-value=17 Score=15.95 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=9.3 Q ss_pred EEEEHHHHHHHHHHHHHHHHCCCC Q ss_conf 586025788888888753100467 Q gi|254780673|r 342 TIISFGIGMTYATKAAIELEKNGI 365 (467) Q Consensus 342 tii~~G~~~~~a~~aa~~L~~~gi 365 (467) +-|+||.|.+.|...|.=+..-|| T Consensus 614 cgvaWGa~SQKAaaIatG~nR~GI 637 (779) T PRK00941 614 CGVAWGAYSQKAAAIATGFNRWGI 637 (779) T ss_pred EEEEECHHHHHHHHHHCCCCEECC T ss_conf 788641330778998708651078 No 269 >PRK11637 hypothetical protein; Provisional Probab=49.60 E-value=10 Score=17.53 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=6.5 Q ss_pred EEEEECCCCCEEEE Q ss_conf 14443168745860 Q gi|254780673|r 332 ARIHRQGSDVTIIS 345 (467) Q Consensus 332 ~~i~~~G~ditii~ 345 (467) +..+..|.-|..++ T Consensus 362 Gq~V~~Gq~Ig~vG 375 (404) T PRK11637 362 GAQVRAGQPIALVG 375 (404) T ss_pred CCEECCCCEEEEEE T ss_conf 79989999698732 No 270 >smart00226 LMWPc Low molecular weight phosphatase family. Probab=48.92 E-value=18 Score=15.83 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=51.6 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC---- Q ss_conf 8887531004675279733006857999999999871989999578876767899999999967764289829971---- Q gi|254780673|r 354 TKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTIT---- 429 (467) Q Consensus 354 ~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~---- 429 (467) -+|.+.|++.||+... + -+++..+. +.....++++++... ..+....-......+.+++ T Consensus 44 ~~a~~~l~~~Gid~s~---~-sr~i~~~~----~~~~DlIl~Md~~~~---------~~l~~~~p~~~~~kv~~l~~~~~ 106 (140) T smart00226 44 PRAVEVLKEHGIALSH---H-ASQLTSSD----FKNADLVLAMDHSHL---------RNICRLKPRVSRAKVELFGEYVT 106 (140) T ss_pred HHHHHHHHHHCCCCCC---C-CCCCCHHH----HHHCCEEEEECHHHH---------HHHHHHCCCCCCHHEEEHHHHCC T ss_conf 8999999995988221---4-35487878----716999999092789---------99876568644102464745366 Q ss_pred --CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCC Q ss_conf --777888889667656089989999999998502 Q gi|254780673|r 430 --GRDVPMPYAANLEKLALPNVDEIIESVESICYK 462 (467) Q Consensus 430 --~~d~p~P~~~~le~~~~p~~~~I~~av~~v~~~ 462 (467) ..|+|-||...++. |--..+.|-++++..+.| T Consensus 107 ~~~~dI~DPyg~~~~~-F~~~~~~I~~~~~~ll~k 140 (140) T smart00226 107 GSHGDVDDPYYGGIDG-FEQVYDELENALQEFLKQ 140 (140) T ss_pred CCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHC T ss_conf 6687378999997799-999999999999999819 No 271 >PRK07050 cystathionine beta-lyase; Provisional Probab=48.71 E-value=18 Score=15.81 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=26.6 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC-CCEECCCC Q ss_conf 122355443113650699932434458866532364754081-11011666 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGC-ERVIDTPI 194 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~-~R~~d~pi 194 (467) |+..++...++....++ ...++ |||.+..-+.+..+||= -+++|.-- T Consensus 92 Ai~~~ll~ll~~Gd~vv-~~~~~--Yg~T~~~~~~~l~~~Gi~v~f~d~~d 139 (394) T PRK07050 92 AISNVYFGLVKAGDDVL-IPDNV--YGPNRDFGEWLAKDFGITVRFYDPMI 139 (394) T ss_pred HHHHHHHHHCCCCCEEE-ECCCC--CHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 99999999607998578-35666--33389999987531887999979999 No 272 >cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Probab=48.05 E-value=19 Score=15.74 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=50.1 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EE-EEECCCCCCCHH------HHHHHHHHHHHHHH Q ss_conf 88888753100467527973300685799999999987198----99-995788767678------99999999967764 Q gi|254780673|r 352 YATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LV-TVEEGYPQSSVG------STIANQVQRKVFDY 420 (467) Q Consensus 352 ~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i-~vee~~~~gg~g------~~i~~~i~e~~f~~ 420 (467) .+-+|-+.|.+.|++.+++|.+ -.|++.+.+...+++.+. ++ +=+..|+.-++. +++...+.++. .. T Consensus 11 t~rka~~~L~~~~i~~~~idy~-~~p~~~~eL~~~~~~~~~~~~~lir~~~~~~k~l~l~~~~~s~~e~i~ll~~~P-~L 88 (112) T cd03034 11 KSRNALALLEEAGIEPEIVEYL-KTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLADPELSDEELIDAMAAHP-IL 88 (112) T ss_pred HHHHHHHHHHHCCCCCEEEECC-CCCCCHHHHHHHHHHCCCCHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHCH-HH T ss_conf 8999999999879984898501-467999999999988299999998636854555488742126899999999786-87 Q ss_pred CCCCCEEEC Q ss_conf 289829971 Q gi|254780673|r 421 LDAPILTIT 429 (467) Q Consensus 421 L~~p~~ri~ 429 (467) ++.|+..-+ T Consensus 89 ikRPIl~~~ 97 (112) T cd03034 89 IERPIVVTG 97 (112) T ss_pred HHCCEEEEC T ss_conf 608779869 No 273 >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase; InterPro: IPR006003 The enzymes for catabolism of the pentitols D-arabinitol and ribitol include NAD-dependent pentose dehydrogenase (dalD and rbtD), ATP-dependent pentulose kinases (dalK and rbtK) and a pentose-specific ion symporter (dalT and rbtT). Of the two kinases (19.3 0dentity), DalK (487 aa) belongs to the family of short D-xylulokinases and RbtK (D-ribulokinase; 535 aa) to the family of long kinases . . Probab=48.04 E-value=7 Score=18.72 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=39.2 Q ss_pred CEEEEHHHHHHHHHHHHHHHHC---CC-CCEEEEEC---CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH Q ss_conf 4586025788888888753100---46-75279733---00685799999999987198999957887676789999999 Q gi|254780673|r 341 VTIISFGIGMTYATKAAIELEK---NG-IDAELIDL---RTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQV 413 (467) Q Consensus 341 itii~~G~~~~~a~~aa~~L~~---~g-i~~~vid~---r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i 413 (467) +.+.=+..|-..|+....+++. .| .-..-|=+ .+=.||=.+ |+.-+-.-=-|++ -+....-=+|+++.--. T Consensus 439 la~lY~a~~~~iaygtRqI~ea~~~~Gr~~~k~i~~sGg~~qnpl~~q-~~Ad~C~~Pvlip-r~~~e~Vl~GaA~LGA~ 516 (574) T TIGR01315 439 LALLYLATLEAIAYGTRQIVEALTAAGRAVIKSILISGGLAQNPLLVQ-LLADICDLPVLIP-RDVQEAVLLGAAILGAA 516 (574) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHH-HHHHHCCCCEECC-HHHCHHHHHHHHHHHHH T ss_conf 999999999998643889999986268602201134176445257888-8963417873244-11020577768888876 Q ss_pred HH------HHHHHCCCCCEEECCCCCC-CCCCHHHHHHCC Q ss_conf 99------6776428982997177788-888966765608 Q gi|254780673|r 414 QR------KVFDYLDAPILTITGRDVP-MPYAANLEKLAL 446 (467) Q Consensus 414 ~e------~~f~~L~~p~~ri~~~d~p-~P~~~~le~~~~ 446 (467) .. +.|+-|..-..|++..+-- -|....-|+..+ T Consensus 517 A~asakPdg~~~sl~~am~~m~~~gk~v~p~~~~~e~~lh 556 (574) T TIGR01315 517 ASASAKPDGIAESLEEAMKRMSKVGKLVYPREETAEKKLH 556 (574) T ss_pred HCCCCCCCCCCCCHHHHHHHCCCCCCEECCCCCHHHHHHH T ss_conf 3135688888876799998528998533267654678877 No 274 >CHL00006 consensus Probab=48.03 E-value=19 Score=15.74 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=31.3 Q ss_pred EEECCCCCEECCCCEEEEEE--------CCCCEEEEECCCCCEE Q ss_conf 77417897625898599995--------3753334317778689 Q gi|254780673|r 21 KWKKNEGDLIKQGDIIYEVE--------TDKAVMEVESIDEGIL 56 (467) Q Consensus 21 ~W~vk~GD~V~~gd~l~eiE--------TDKat~EV~A~~~G~i 56 (467) =++|+.|+.|+.+|+|+||- ++|+.=+|-|..+|-+ T Consensus 405 lL~V~n~q~V~s~QvIAEi~a~~~~~~~kEk~~K~i~s~~~GE~ 448 (1372) T CHL00006 405 FLLVQNDQYVESEQVIAEIRAGTSTFNFKERVRKHIYSDSEGEM 448 (1372) T ss_pred EEEEECCCEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCCCC T ss_conf 89998995885052899982577666630258767752776412 No 275 >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. Probab=47.95 E-value=19 Score=15.73 Aligned_cols=38 Identities=32% Similarity=0.399 Sum_probs=17.7 Q ss_pred HCCCCC-EEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC Q ss_conf 113650-6999324344588665323647540811101166 Q gi|254780673|r 154 MRRDKD-VFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP 193 (467) Q Consensus 154 m~~d~~-~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p 193 (467) +.+-++ +++.|..+... ++...-..|.+++| --|+.|+ T Consensus 198 l~~A~rPvi~~G~Gv~~~-~a~~~l~~lae~l~-~PV~tt~ 236 (535) T TIGR03394 198 MRSATSPVMMVCVEVRRY-GLEAKVAELAQRLG-VPVVTTF 236 (535) T ss_pred HHHCCCCEEEEECCCCCC-CHHHHHHHHHHHHC-CCCCCCC T ss_conf 985568829983140024-57999999999728-8844264 No 276 >PRK06276 acetolactate synthase catalytic subunit; Reviewed Probab=47.62 E-value=19 Score=15.70 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=17.2 Q ss_pred CC-CCCCHHHHHHCCCCH------HHHHHHHHHHHCCC Q ss_conf 88-888966765608998------99999999985020 Q gi|254780673|r 433 VP-MPYAANLEKLALPNV------DEIIESVESICYKR 463 (467) Q Consensus 433 ~p-~P~~~~le~~~~p~~------~~I~~av~~v~~~~ 463 (467) .| +|-+..|++-..|.. ..-+...|++++-| T Consensus 548 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (586) T PRK06276 548 LPMVPPGGNLTNILGPERQEPTPKAQCFSEMKKILNPK 585 (586) T ss_pred CCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 89999899988836886446651778888787531789 No 277 >PRK05569 flavodoxin; Provisional Probab=47.55 E-value=17 Score=16.04 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=21.9 Q ss_pred EHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC Q ss_conf 02578888888875310046752797330068 Q gi|254780673|r 345 SFGIGMTYATKAAIELEKNGIDAELIDLRTIR 376 (467) Q Consensus 345 ~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~ 376 (467) .||++-..|...++-+.+.|+++++.++.... T Consensus 11 ~~GnTe~mA~~IaeG~~~~G~ev~v~~~~~~~ 42 (141) T PRK05569 11 CGGNVEVLANTIADGAKEAGAEVTIKHVADAK 42 (141) T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 96089999999999999769819999842399 No 278 >PRK08236 hypothetical protein; Provisional Probab=47.45 E-value=8 Score=18.31 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=32.8 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCH Q ss_conf 23554431136506999324344588665323647540811101166662 Q gi|254780673|r 147 RDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITE 196 (467) Q Consensus 147 ~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E 196 (467) ..++.+.+..+..++++=-.||.---++ .|.-|.++|+|+.++|+||+= T Consensus 14 ~~~~~~g~~~~~~v~ll~sGIGkVnAA~-~t~~li~~~~pd~VIntGiAG 62 (207) T PRK08236 14 KEAVLRGLGGDGAVDVLAAGVGPAAAAA-STARALAAAPYDLVVSAGIAG 62 (207) T ss_pred HHHHHHHCCCCCCEEEEECCCCHHHHHH-HHHHHHHHCCCCEEEEECCCC T ss_conf 9999986089977899947825999999-999999867999999934345 No 279 >PRK06456 acetolactate synthase catalytic subunit; Reviewed Probab=47.16 E-value=19 Score=15.65 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=17.8 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECC Q ss_conf 122355443113650699932434458866532364754081110116 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDT 192 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~ 192 (467) ++.++..-......-+++.|..+.. .|++..-..|.+++| -.|+.| T Consensus 196 ~i~~a~~lL~~AkrPvIl~G~G~~~-~~a~~~l~~lae~l~-~Pv~tT 241 (572) T PRK06456 196 KIKKAAEILINAERPIILVGTGVVW-SNATPEVLELAELLH-IPIVST 241 (572) T ss_pred HHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHHHHC-CCCEEC T ss_conf 9999999998189988999558241-436499999999839-981220 No 280 >PRK08322 acetolactate synthase; Reviewed Probab=46.96 E-value=19 Score=15.63 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=18.6 Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCC Q ss_conf 069993243445886653236475408111011666 Q gi|254780673|r 159 DVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPI 194 (467) Q Consensus 159 ~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi 194 (467) -+++.|..+... ++...-+.|.+++|- .|+.|+- T Consensus 199 PvIi~G~g~~~~-~a~~~l~~lae~l~~-PV~tt~~ 232 (547) T PRK08322 199 PLILIGAGANRK-TASKALTEFVDKTGI-PFFTTQM 232 (547) T ss_pred CEEECCCCCCCH-HHHHHHHHHHHHHCC-CEEEECC T ss_conf 789868885734-099999999998299-7896046 No 281 >COG1069 AraB Ribulose kinase [Energy production and conversion] Probab=46.60 E-value=15 Score=16.50 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=48.5 Q ss_pred CEEEEHHHHHHHHHHHHHH---HHCCCCCEEEEEC-CCC--CCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH Q ss_conf 4586025788888888753---1004675279733-006--857999999999871989999578876767899999999 Q gi|254780673|r 341 VTIISFGIGMTYATKAAIE---LEKNGIDAELIDL-RTI--RPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQ 414 (467) Q Consensus 341 itii~~G~~~~~a~~aa~~---L~~~gi~~~vid~-r~l--~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~ 414 (467) ++.+-++.....|+.+..+ +++.||.++=|-+ --+ +|+=.+. -..-||+-|++-.+-...=+|+.+..-+. T Consensus 403 l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql---~aDvtg~~v~i~~s~~a~llGsAm~~avA 479 (544) T COG1069 403 LALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQL---YADVTGRPVVIPASDQAVLLGAAMFAAVA 479 (544) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHH---HHHHCCCEEEEECCCCHHHHHHHHHHHHH T ss_conf 899999999999866999999999769701478871773238999999---87740975785266420256789999987 Q ss_pred HHHHHHCCCCC Q ss_conf 96776428982 Q gi|254780673|r 415 RKVFDYLDAPI 425 (467) Q Consensus 415 e~~f~~L~~p~ 425 (467) -..|..|...- T Consensus 480 ag~~~dl~~A~ 490 (544) T COG1069 480 AGVHPDLPAAA 490 (544) T ss_pred CCCCCCHHHHH T ss_conf 05574469999 No 282 >PRK06242 flavodoxin; Provisional Probab=46.52 E-value=20 Score=15.58 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=31.5 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHH-HHHHCCCCHHHHHHHHH Q ss_conf 99957887676789999999996776428982997177788888966-76560899899999999 Q gi|254780673|r 394 VTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAAN-LEKLALPNVDEIIESVE 457 (467) Q Consensus 394 i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~-le~~~~p~~~~I~~av~ 457 (467) ++..-|.....+...+...+.++++..+.. --+-+-|+.-|+... .-....|+.+|+-+|.+ T Consensus 79 ~F~T~G~~~~~~~~~l~~~L~~kg~~v~G~--F~CkG~dt~gp~k~~ggi~kghPn~~Dl~~A~~ 141 (150) T PRK06242 79 IFSTSGLGKSKYHKALRKKLEEKGFIIIGE--FTCKGFDTFGPFKLIGGINKGHPNEKDLENAKE 141 (150) T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCEEEEE--EEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHH T ss_conf 998889897336899999999689979788--984150255744321665489949899999999 No 283 >PRK05939 hypothetical protein; Provisional Probab=46.48 E-value=20 Score=15.58 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=24.2 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCC-CCCEECCCC Q ss_conf 12235544311365069993243445886653236475408-111011666 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFG-CERVIDTPI 194 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg-~~R~~d~pi 194 (467) |+.-++...++....++ ...++ |||.+....- +.+|| .-+++|.-- T Consensus 73 Ai~~~l~~ll~~Gd~il-~~~~~--YG~t~~l~~~-l~~~GI~v~~vd~~d 119 (396) T PRK05939 73 AIAAVFLTLLRAGDHLV-SSQYL--FGNTNSLLGT-LQGLGVEVTMVDATD 119 (396) T ss_pred HHHHHHHHHCCCCCEEE-ECCCC--CCHHHHHHHH-HHHCCEEEEEECCCC T ss_conf 99999998358898899-53886--9229999998-653186999988979 No 284 >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Probab=46.34 E-value=14 Score=16.67 Aligned_cols=29 Identities=0% Similarity=0.110 Sum_probs=10.8 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCEEECCCCC Q ss_conf 678999999999677642898299717778 Q gi|254780673|r 404 SVGSTIANQVQRKVFDYLDAPILTITGRDV 433 (467) Q Consensus 404 g~g~~i~~~i~e~~f~~L~~p~~ri~~~d~ 433 (467) .+++.+.+.++++.... +.+--|+...+. T Consensus 257 ~La~sL~aVisQ~L~~~-~~g~GRv~~~EI 285 (353) T COG2805 257 QLAESLRAVISQRLLPK-KDGGGRVAAFEI 285 (353) T ss_pred HHHHHHHHHHHHHCEEC-CCCCCEEEEEHH T ss_conf 99999999976331003-689961464157 No 285 >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. Probab=45.41 E-value=20 Score=15.47 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=51.1 Q ss_pred CCCCEECCCCC--HHHHHHHHHHHHHCC-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC Q ss_conf 81110116666--278998999988718-864456666-67899999999987886742117767888799830244576 Q gi|254780673|r 185 GCERVIDTPIT--EHGFAGIGIGASFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR 260 (467) Q Consensus 185 g~~R~~d~pi~--E~~~~G~a~G~A~~G-~~Piv~~~~-~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~ 260 (467) .+.|++..+-. =..-+..|+|++++- -||++.+.- ..|.|...+ +..+. +.++|+++-.-+-.+++ T Consensus 39 ~~~~~~~~~~~g~mG~~lpaAiGa~lA~p~~~Vv~i~GDG~f~m~~~E--l~Ta~--------r~~l~vi~vV~NN~~~~ 108 (183) T cd02005 39 KGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQE--LSTMI--------RYGLNPIIFLINNDGYT 108 (183) T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH--HHHHH--------HHCCCEEEEEEECCCCC T ss_conf 999898377750377899999999997899847999567367620889--99999--------82998199999899432 Q ss_pred -----CCHHHH------HHHHHHHHH------HCCCEEEEEECCHHCCCHHHHHHH-CCCCEE Q ss_conf -----444433------216887632------203138665221000105556541-378347 Q gi|254780673|r 261 -----VAAQHS------QCYAAWYSH------VPGLKVVIPYTASDAKGLLKAAIR-DPNPVI 305 (467) Q Consensus 261 -----~g~~Hs------~~~~~~~~~------iPgl~V~~P~~~~d~~~ll~~ai~-~~~Pvi 305 (467) ++..++ -+|..+... ++|++| .++.|++..|+.|+. .+.|++ T Consensus 109 ~~r~~~~~~~~~~~~~~~df~~~A~a~G~~~g~~g~rV---~~~~el~~al~~Al~~~~~P~l 168 (183) T cd02005 109 IERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRV---KTEGELDEALKDALFNRDKLSL 168 (183) T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEE---CCHHHHHHHHHHHHHCCCCEEE T ss_conf 55751268656576999999999999478668428997---8999999999999972898299 No 286 >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Probab=45.33 E-value=20 Score=15.46 Aligned_cols=19 Identities=37% Similarity=0.211 Sum_probs=8.3 Q ss_pred CHHHHHHHHHHHHHCCCCC Q ss_conf 6278998999988718864 Q gi|254780673|r 195 TEHGFAGIGIGASFAGLKP 213 (467) Q Consensus 195 ~E~~~~G~a~G~A~~G~~P 213 (467) -||+...+|.|+|..--|| T Consensus 47 HEq~Aa~mAdgyar~TGkp 65 (550) T COG0028 47 HEQGAAFAADGYARATGKP 65 (550) T ss_pred CHHHHHHHHHHHHHHHCCC T ss_conf 5899999999999982998 No 287 >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. Probab=45.06 E-value=21 Score=15.43 Aligned_cols=115 Identities=19% Similarity=0.150 Sum_probs=54.9 Q ss_pred HHHHCCCCCEECCCCCH--HHHHHHHHHHHHCC-CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC Q ss_conf 47540811101166662--78998999988718-86445666-6678999999999878867421177678887998302 Q gi|254780673|r 180 LLQEFGCERVIDTPITE--HGFAGIGIGASFAG-LKPIVEFM-TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPN 255 (467) Q Consensus 180 l~~~fg~~R~~d~pi~E--~~~~G~a~G~A~~G-~~Piv~~~-~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~ 255 (467) +..-+.|.|++..+--- ..-++.|+|++++- -||++.+. ...|.|...+ +..+. +.++|+++..-. T Consensus 32 ~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~E--L~Ta~--------~~~lpi~~iV~n 101 (172) T cd02004 32 ILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFSGME--LETAV--------RYNLPIVVVVGN 101 (172) T ss_pred HCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHCCCHH--HHHHH--------HHCCCEEEEEEE T ss_conf 74737999498079876477799999999997899849999779734024078--88999--------849885999982 Q ss_pred CCCCCCCHHHH-----------------HHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE Q ss_conf 44576444433-----------------2168876322031386652210001055565413783476 Q gi|254780673|r 256 GAAARVAAQHS-----------------QCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF 306 (467) Q Consensus 256 G~~~~~g~~Hs-----------------~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~ 306 (467) -.+++. ..+. -++..+ +.-=|.+-....++.|++..|+.+++.++|+++ T Consensus 102 N~~~~~-i~~~q~~~~~~~~~~~~~~~~~df~~i-A~a~G~~~~~v~~~~el~~al~~a~~~~~p~li 167 (172) T cd02004 102 NGGWYQ-GLDGQQLSYGLGLPVTTLLPDTRYDLV-AEAFGGKGELVTTPEELKPALKRALASGKPALI 167 (172) T ss_pred CCCHHH-HHHHHHHHHCCCCCCEECCCCCCHHHH-HHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEE T ss_conf 883289-999989872689874321899877899-997598289978999999999999958996999 No 288 >pfam09363 XFP_C XFP C-terminal domain. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. Probab=44.95 E-value=20 Score=15.54 Aligned_cols=133 Identities=17% Similarity=0.319 Sum_probs=63.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCCCCCCCHHH-HHHHHHH-HHHHCCCEEEEEECCHH----------CCC Q ss_conf 99999987886742117767888-79983024457644443-3216887-63220313866522100----------010 Q gi|254780673|r 226 AIDQIINSAAKTRYMSGGQITTS-IVFRGPNGAAARVAAQH-SQCYAAW-YSHVPGLKVVIPYTASD----------AKG 292 (467) Q Consensus 226 a~dqi~n~~ak~~~~~gg~~~~p-~v~r~p~G~~~~~g~~H-s~~~~~~-~~~iPgl~V~~P~~~~d----------~~~ 292 (467) |-.++..-++.|.|.|..+-.-| ||+- ..|.-|+. +..=..+ -.++|.|+|=. -|..| ..+ T Consensus 13 A~~hc~~G~~iW~wAS~d~g~ePDVVlA-----~aGd~pT~E~LAA~~lLr~~~P~lkiR~-VNVvDLm~L~~~~~hphg 86 (203) T pfam09363 13 AIAHCTKGLGIWDWASNDDGEEPDVVMA-----CAGDVPTLETLAAVDLLREHFPDLKIRV-VNVVDLMKLQPPSEHPHG 86 (203) T ss_pred HHHHHHCCCEEEEECCCCCCCCCCEEEE-----CCCCCCCHHHHHHHHHHHHHCCCCEEEE-EEEEEHHHHCCCCCCCCC T ss_conf 9999975870897434799999999998-----1787211999999999998698756999-997671321788889988 Q ss_pred H----HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECC-CCCEEEEHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 5----556541378347640212333334533466312144311444316-87458602578888888875310046752 Q gi|254780673|r 293 L----LKAAIRDPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQG-SDVTIISFGIGMTYATKAAIELEKNGIDA 367 (467) Q Consensus 293 l----l~~ai~~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G-~ditii~~G~~~~~a~~aa~~L~~~gi~~ 367 (467) | +.+.+-.+.||||==|. |..- ... +-++ |.+ ..+.+-+| .++|--. T Consensus 87 Lsd~~Fd~lFT~DkPViF~fHG--Yp~l-----I~~--L~~~-----R~n~~n~hV~GY--------------~EeGttT 138 (203) T pfam09363 87 LSDREFDSLFTTDKPVIFAFHG--YPWL-----IHR--LTYR-----RTNHHNLHVRGY--------------KEEGTTT 138 (203) T ss_pred CCHHHHHHHCCCCCCEEEECCC--CHHH-----HHH--HHCC-----CCCCCCEEEEEE--------------CCCCCCC T ss_conf 9978999756799977998179--8889-----999--8557-----899884578710--------------0178878 Q ss_pred EEEECCCCCCCCH-HHHHHHHHHCCC Q ss_conf 7973300685799-999999987198 Q gi|254780673|r 368 ELIDLRTIRPMDW-QTIFESVKKTGR 392 (467) Q Consensus 368 ~vid~r~l~Pld~-~~i~~sv~kt~~ 392 (467) +=+||+-++-+|. ....+.+.+..+ T Consensus 139 TPFDM~v~N~~dRfhLa~dai~~~~~ 164 (203) T pfam09363 139 TPFDMRVLNELDRFHLAIDAIDRVPR 164 (203) T ss_pred CCHHHHHHCCCCHHHHHHHHHHHCHH T ss_conf 71678877076689999999996520 No 289 >pfam00308 Bac_DnaA Bacterial dnaA protein. Probab=44.91 E-value=21 Score=15.42 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=36.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH-HHH-HHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCC Q ss_conf 9999987886742117767888799830244576444433-216-887632203138665221000105556541378 Q gi|254780673|r 227 IDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHS-QCY-AAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPN 302 (467) Q Consensus 227 ~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~-~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~ 302 (467) .++....+++......|....|+.+-||.| .|-+|- |.. ..+...-||.+|++-+ +.+...-+..++++.. T Consensus 15 ~N~~a~~~~~~i~~~~~~~~npl~i~G~~G----~GKTHLLqA~~~~~~~~~~~~~v~yl~-~~~~~~~~~~~l~~~~ 87 (219) T pfam00308 15 SNRFAHAAALAVAEAPGKAYNPLFIYGGVG----LGKTHLLHAIGNYALRNFPNLRVVYLT-SEEFLNDFVDALRDNK 87 (219) T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEECCCC----CCHHHHHHHHHHHHHHHCCCCEEEEEE-HHHHHHHHHHHHHCCC T ss_conf 389999999999967587678269988999----988899999999999849998288843-9999998899998188 No 290 >PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed Probab=44.91 E-value=21 Score=15.42 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=10.1 Q ss_pred EEEEHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 586025788888888753100467527 Q gi|254780673|r 342 TIISFGIGMTYATKAAIELEKNGIDAE 368 (467) Q Consensus 342 tii~~G~~~~~a~~aa~~L~~~gi~~~ 368 (467) .|+++|+..-.- .+++.+.+.|+.+. T Consensus 183 ~v~~CGP~~Mmk-~v~~~~~~~~v~~~ 208 (281) T PRK06222 183 RVFAIGPVIMMK-AVAELTKPYGIKTI 208 (281) T ss_pred EEEEECCHHHHH-HHHHHHHHCCCCEE T ss_conf 899989999999-99999987699799 No 291 >PRK04192 V-type ATP synthase subunit A; Provisional Probab=44.82 E-value=21 Score=15.41 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=31.8 Q ss_pred CCCCCEECCCCEEEEEE-CCCCEEE--EECCCCCEEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 17897625898599995-3753334--317778689899823788513269758999437 Q gi|254780673|r 24 KNEGDLIKQGDIIYEVE-TDKAVME--VESIDEGILGKILCPNGTKNVKVNTPIAAILQE 80 (467) Q Consensus 24 vk~GD~V~~gd~l~eiE-TDKat~E--V~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e 80 (467) +|+||.|..||+|-+|. |.=..-. ||--..|.|..| +.+| + ..|.++||.+.+. T Consensus 124 ~~~Gd~v~~Gdilg~V~Et~~i~H~imvPp~~~g~v~~i-~~~G-~-ytv~d~ia~v~~~ 180 (585) T PRK04192 124 VKVGDKVVAGDVLGTVQETGSIEHKIMVPPGVSGTIKEI-ASEG-D-YTVDDTIAVVEDE 180 (585) T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCEEEEE-ECCC-C-EEEEEEEEEEECC T ss_conf 355874157865788504665334110698887338997-0588-5-0430169998626 No 292 >PRK08045 cystathionine gamma-synthase; Provisional Probab=44.78 E-value=21 Score=15.40 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=23.0 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCC-CCCEECCCCCHHHH Q ss_conf 12235544311365069993243445886653236475408-11101166662789 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFG-CERVIDTPITEHGF 199 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg-~~R~~d~pi~E~~~ 199 (467) |+.-++.-.++....++ ...++ |||.+..-+.+..+|| .-+++|. ..++++ T Consensus 79 Ais~~l~~~l~~Gd~vv-~~~~~--Yg~T~~l~~~~~~~~gi~v~~~d~-~d~~~~ 130 (386) T PRK08045 79 AIHLVTTVFLKPGDLLV-APHDC--YGGSYRLFDSLAKRGCYRVLFVDQ-GDEQAL 130 (386) T ss_pred HHHHHHHHHCCCCCEEE-ECCCC--CHHHHHHHHHHHCCCCEEEEEECC-CCHHHH T ss_conf 99999997079999899-83786--348999999872079579999699-998999 No 293 >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed Probab=43.99 E-value=21 Score=15.32 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=15.0 Q ss_pred CCCCCCCHHHHCCC--CCEECCCCCH Q ss_conf 66532364754081--1101166662 Q gi|254780673|r 173 AYKVTQGLLQEFGC--ERVIDTPITE 196 (467) Q Consensus 173 ~f~~t~gl~~~fg~--~R~~d~pi~E 196 (467) -|..|+.+.++... -+++|.|+|= T Consensus 97 ~~~~t~~~~~~l~~~gi~flDapVSG 122 (298) T PRK12490 97 RYKDDLRRAEELAERGIHYVDCGTSG 122 (298) T ss_pred CHHHHHHHHHHHHHCCCCEECCCCCC T ss_conf 99999999999997599030553578 No 294 >COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism] Probab=43.76 E-value=21 Score=15.30 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=46.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 57888888887531004675279733006857999999999871989999578876767899999999967764289829 Q gi|254780673|r 347 GIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPIL 426 (467) Q Consensus 347 G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ 426 (467) |.+-..|...|..|.+.|+.|++.|++-+.-++++. .. -|++--+...|-|-+++-+.|..+.-..-..|.. T Consensus 12 GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~-------yd-avVIgAsI~~~h~~~~~~~Fv~k~~e~L~~kP~A 83 (175) T COG4635 12 GQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALED-------YD-AVVIGASIRYGHFHEAVQSFVKKHAEALSTKPSA 83 (175) T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCHHH-------CC-EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 758999999999755417705653656540268411-------75-6998241136666899999999999998159866 No 295 >PRK07979 acetolactate synthase 3 catalytic subunit; Validated Probab=43.09 E-value=22 Score=15.23 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=8.3 Q ss_pred CHHHHHHHHHHHHC Q ss_conf 98999999999850 Q gi|254780673|r 448 NVDEIIESVESICY 461 (467) Q Consensus 448 ~~~~I~~av~~v~~ 461 (467) +.+++-.++++.+. T Consensus 520 ~~~el~~al~~Al~ 533 (574) T PRK07979 520 HPDELESKLSEALE 533 (574) T ss_pred CHHHHHHHHHHHHH T ss_conf 99999999999984 No 296 >PRK07710 acetolactate synthase catalytic subunit; Reviewed Probab=41.66 E-value=23 Score=15.08 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=5.5 Q ss_pred CHHHHHHHHHHHH Q ss_conf 9899999999985 Q gi|254780673|r 448 NVDEIIESVESIC 460 (467) Q Consensus 448 ~~~~I~~av~~v~ 460 (467) +.+++-.++++.+ T Consensus 523 ~~~el~~Al~~Al 535 (571) T PRK07710 523 DPLEAKEQLQHAI 535 (571) T ss_pred CHHHHHHHHHHHH T ss_conf 9999999999998 No 297 >cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. Probab=41.49 E-value=14 Score=16.64 Aligned_cols=19 Identities=37% Similarity=0.775 Sum_probs=9.8 Q ss_pred HHHHHHHHCCCCCEEEEEC Q ss_conf 2355443113650699932 Q gi|254780673|r 147 RDAIAEEMRRDKDVFIMGE 165 (467) Q Consensus 147 ~~a~~e~m~~d~~~~~~ge 165 (467) .+++...|+.||+++++|| T Consensus 64 ~~~lr~aLR~~PDvI~vGE 82 (198) T cd01131 64 ENALKAALRQDPDVILVGE 82 (198) T ss_pred HHHHHHHHHHCCCEEECCC T ss_conf 9999999854888575277 No 298 >pfam02776 TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain. Probab=41.36 E-value=23 Score=15.05 Aligned_cols=118 Identities=20% Similarity=0.145 Sum_probs=59.1 Q ss_pred CCCHHHHCCCC---CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE Q ss_conf 23647540811---1011666627899899998871886445666667-8999999999878867421177678887998 Q gi|254780673|r 177 TQGLLQEFGCE---RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFN-FAMQAIDQIINSAAKTRYMSGGQITTSIVFR 252 (467) Q Consensus 177 t~gl~~~fg~~---R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~-f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r 252 (467) ...|.+.+... |+ =....|++.+.+|.|+|...-||-+.+.+.. =+..++..|.|- |. -+.||++- T Consensus 27 ~~~l~~al~~~~~i~~-i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~gl~~A-----~~----~~~Pvl~i 96 (172) T pfam02776 27 ILPLLDALAKSPGIRY-VLVRHEQGAGFAADGYARATGKPGVVLVTSGPGATNALTGLANA-----YV----DSIPVLVI 96 (172) T ss_pred HHHHHHHHHHCCCCEE-EEECCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH-----HH----CCCCEEEE T ss_conf 7999999986799769-98687799999999999986998799983580688799999999-----87----59984999 Q ss_pred EECCCCCCC--CHHH-HHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH-----CCCCEE Q ss_conf 302445764--4443-3216887632203138665221000105556541-----378347 Q gi|254780673|r 253 GPNGAAARV--AAQH-SQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR-----DPNPVI 305 (467) Q Consensus 253 ~p~G~~~~~--g~~H-s~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~-----~~~Pvi 305 (467) ...-..... +..| .-+...+|+.+-- ......++.++...+..|++ -++||. T Consensus 97 ~g~~~~~~~~~~~~q~~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~ 156 (172) T pfam02776 97 SGQVPTSDLGQGAFQEELDQLALFRPVTK-WAERVTSPDEIPEALDRAFRTALSGRPGPVY 156 (172) T ss_pred ECCCCHHHCCCCCCHHHHHHHCCCCCEEE-EEEECCCHHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 36887776078952000455414566066-8888899999999999999998329997799 No 299 >PRK05858 hypothetical protein; Provisional Probab=41.30 E-value=23 Score=15.04 Aligned_cols=47 Identities=21% Similarity=0.147 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC Q ss_conf 012235544311365-06999324344588665323647540811101166 Q gi|254780673|r 144 EALRDAIAEEMRRDK-DVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP 193 (467) Q Consensus 144 ea~~~a~~e~m~~d~-~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p 193 (467) ++++++. +.+.+-+ -+++.|.++.. .++...-+.|.+++|- .|+.|+ T Consensus 193 ~~i~~a~-~~L~~AkrPvii~G~gv~~-~~a~~~l~~lae~lg~-Pv~tt~ 240 (543) T PRK05858 193 DALDRAA-GLLSTAQRPVIMAGTNVWW-GHAEAALLRLAEELHI-PVLMNG 240 (543) T ss_pred HHHHHHH-HHHHHCCCCEEEECCCCCC-CCHHHHHHHHHHHHCC-CEEECC T ss_conf 9999999-9998279978996864223-3339999999998699-778755 No 300 >PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Probab=41.14 E-value=23 Score=15.03 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=25.7 Q ss_pred EHHHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCHHHHHHHHHHCCCEE Q ss_conf 025788888888753100--46752797330068579999999998719899 Q gi|254780673|r 345 SFGIGMTYATKAAIELEK--NGIDAELIDLRTIRPMDWQTIFESVKKTGRLV 394 (467) Q Consensus 345 ~~G~~~~~a~~aa~~L~~--~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i 394 (467) .||++-..|...|+-|.+ .|+.++++|++.- |...|+..+.+.+.++ T Consensus 261 myGnT~~MA~aIA~Gl~~~~~gv~V~~~n~~~~---~~seI~~~i~~s~gvl 309 (479) T PRK05452 261 MSNNTRMMADAIAQGIAEVDPRVAVKIFNVARS---DKNEILTNVFRSKGVL 309 (479) T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC---CHHHHHHHHHHCCEEE T ss_conf 503099999999999985179944999974679---9899999998689899 No 301 >TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit; InterPro: IPR006443 This family of sequences describe a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex aeolicus. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilised mainly in the nitrate respiration by nitrate reductase . In Escherichia coli and Salmonella typhi, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in Escherichia coli which contain selenocysteine .; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0005737 cytoplasm. Probab=41.00 E-value=19 Score=15.61 Aligned_cols=68 Identities=22% Similarity=0.368 Sum_probs=45.9 Q ss_pred CCEEEEEECCHHCCCH-HHHHHHCC---CC-EEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHH Q ss_conf 3138665221000105-55654137---83-4764021233333453346631214431144431687458602578888 Q gi|254780673|r 278 GLKVVIPYTASDAKGL-LKAAIRDP---NP-VIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTY 352 (467) Q Consensus 278 gl~V~~P~~~~d~~~l-l~~ai~~~---~P-vi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~ 352 (467) +|.+|+=+||+|..=+ ++.+|+.. +- +|.+.+ +|+|...+ -|...| +|.|+|||.+. .|+.. T Consensus 233 dli~v~GgNPAEnHP~gFkWai~Akek~GAkiI~iDP--RfnRTa~v---aDl~ap------iRsGsDIaFL~--G~i~Y 299 (1043) T TIGR01553 233 DLILVMGGNPAENHPVGFKWAIKAKEKKGAKIIVIDP--RFNRTAAV---ADLYAP------IRSGSDIAFLN--GLIKY 299 (1043) T ss_pred CEEEECCCCCCCCCCCCCEEHHHHHCCCCCEEEEECC--CCCCCHHH---CEEEEE------CCCCCHHHHHH--HHHHH T ss_conf 6889717787202676510022111137877999788--98710100---113321------68983388876--79999 Q ss_pred HHHHHH Q ss_conf 888875 Q gi|254780673|r 353 ATKAAI 358 (467) Q Consensus 353 a~~aa~ 358 (467) .|+--. T Consensus 300 ~Le~e~ 305 (1043) T TIGR01553 300 VLEKEK 305 (1043) T ss_pred HHHHCC T ss_conf 874033 No 302 >PRK02269 ribose-phosphate pyrophosphokinase; Provisional Probab=40.64 E-value=24 Score=14.98 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=23.0 Q ss_pred CCCCEEECCCCC-CCCCCHHHHHHCCCCHHHHH-HHHHHHHCCC Q ss_conf 898299717778-88889667656089989999-9999985020 Q gi|254780673|r 422 DAPILTITGRDV-PMPYAANLEKLALPNVDEII-ESVESICYKR 463 (467) Q Consensus 422 ~~p~~ri~~~d~-p~P~~~~le~~~~p~~~~I~-~av~~v~~~~ 463 (467) ++++.+|-.-|+ |.|.....+|....|...++ ++++++.+.. T Consensus 267 ~s~i~~ivvTdTi~~p~~~~~~ki~~lsva~llAeaI~ri~~~~ 310 (321) T PRK02269 267 KSAIEKLIVLDTIYLPEERLIDKIEQISIADLVAEAIIRIHEKR 310 (321) T ss_pred CCCCCEEEEECCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHCCC T ss_conf 08998899808977864455898289876899999999986799 No 303 >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. Probab=40.48 E-value=24 Score=14.96 Aligned_cols=148 Identities=15% Similarity=0.114 Sum_probs=68.2 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCC-CCHHHHHH-HH Q ss_conf 01223554431136506999324344588665323647540811101166662789989999887188-64456666-67 Q gi|254780673|r 144 EALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGL-KPIVEFMT-FN 221 (467) Q Consensus 144 ea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~-~Piv~~~~-~~ 221 (467) .++.+++.|.....+++++ -.|++=++ +..-| -++-..--.-....++|.|+.++.- +.|+.++- .+ T Consensus 12 ~~~~~a~~~l~i~~~~~v~-vs~iGC~~--------~~~~~--~~~~~~~~~hG~a~~~A~G~k~a~p~~~Vva~~GDG~ 80 (193) T cd03375 12 KALAKALAELGIDPEKVVV-VSGIGCSS--------RLPYY--FNTYGFHTLHGRALAVATGVKLANPDLTVIVVSGDGD 80 (193) T ss_pred HHHHHHHHHHCCCCCCEEE-EECCCCCC--------CCCCH--HHCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEEECCH T ss_conf 9999999981899667899-95877467--------66461--1158652021160888867987599973999970655 Q ss_pred HHHHHHHHHHHHHHH-----------HHH-HCCCCCCCCEEEEEECCCCCC---CCH-HHHHHHHHHHH--HHCCCEEEE Q ss_conf 899999999987886-----------742-117767888799830244576---444-43321688763--220313866 Q gi|254780673|r 222 FAMQAIDQIINSAAK-----------TRY-MSGGQITTSIVFRGPNGAAAR---VAA-QHSQCYAAWYS--HVPGLKVVI 283 (467) Q Consensus 222 f~~~a~dqi~n~~ak-----------~~~-~~gg~~~~p~v~r~p~G~~~~---~g~-~Hs~~~~~~~~--~iPgl~V~~ 283 (467) |..-.+.+++|-+-+ ..| |+|||.+ |-+ |.|.... .|. ...-++..+.. +++-...+. T Consensus 81 ~~~iG~~~l~~A~~rn~~i~~iv~DN~~ygmTGgQ~s-ptT---~~g~~t~ttp~G~~~~~~d~~~ia~a~G~~yVa~~~ 156 (193) T cd03375 81 LAAIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQAS-PTT---PEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGF 156 (193) T ss_pred HHHCCHHHHHHHHHHCCCEEEEEECCCCEECCCCCCC-CCC---CCCCEECCCCCCCCCCCCCHHHHHHHCCCCEEEEEC T ss_conf 7645618899999809974999985840442368348-898---898554136778765788999999875998799965 Q ss_pred EECCHHCCCHHHHHHHCCCCEEE Q ss_conf 52210001055565413783476 Q gi|254780673|r 284 PYTASDAKGLLKAAIRDPNPVIF 306 (467) Q Consensus 284 P~~~~d~~~ll~~ai~~~~Pvi~ 306 (467) |.++.+++..++.|++.++|.++ T Consensus 157 ~~~~~~l~~~ik~Al~~~G~s~I 179 (193) T cd03375 157 SGDIKQLKEIIKKAIQHKGFSFV 179 (193) T ss_pred CCCHHHHHHHHHHHHHCCCCEEE T ss_conf 79999999999999808998899 No 304 >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Probab=40.11 E-value=24 Score=14.92 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=26.1 Q ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC Q ss_conf 79999999998719899995788767678999999999677642898299717778888 Q gi|254780673|r 378 MDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMP 436 (467) Q Consensus 378 ld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P 436 (467) +|.+.|....+.+..+..+.-.....-+.+-+...+.++. ++-|+.+.+|+. T Consensus 359 i~~~~i~~f~~~~~~~~~~~~~~~~~P~aA~iGGiaAQEv-------iK~iT~kf~Pi~ 410 (425) T cd01493 359 ISDKEIKLFCKNAAFLRVIRGRSLEHNISAFMGGIAAQEV-------IKLITKQYVPID 410 (425) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-------HHHHCCCCCCCC T ss_conf 8999999999865456543057784669999879999999-------998558850767 No 305 >PRK11798 ClpXP protease specificity-enhancing factor; Provisional Probab=40.03 E-value=24 Score=14.91 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=31.7 Q ss_pred CCCEECCCCEEEEEE--------CCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCC Q ss_conf 897625898599995--------37533343177786898998237885132697589994377772112 Q gi|254780673|r 26 EGDLIKQGDIIYEVE--------TDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGETALDI 87 (467) Q Consensus 26 ~GD~V~~gd~l~eiE--------TDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege~a~~~ 87 (467) +-+.|+.|+++.-|- -|.-.+...|-++|+-.+|. |++++++++..-|...+-.. T Consensus 40 P~~~v~dg~IvLNIsp~Av~~L~i~nd~isF~ARF~G~~~~i~-------vP~~aV~aIyArEnG~Gm~F 102 (140) T PRK11798 40 PMEYVKDGQIVLNISPRAVGNLQLDNDAISFNARFGGVPRQIY-------VPIAAVLAIYARENGQGMMF 102 (140) T ss_pred CHHHCCCCEEEEECCHHHHHCEEECCCEEEEEEEECCEEEEEE-------EEHHHHHHHHHHCCCCCCCC T ss_conf 9888019989997798886030775878999879799158999-------77899642530103787544 No 306 >cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins. Probab=39.50 E-value=22 Score=15.20 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=24.0 Q ss_pred EECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 431687458602578888888875310046752797330 Q gi|254780673|r 335 HRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLR 373 (467) Q Consensus 335 ~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r 373 (467) +.+.+.+-+.|.|..-..+.+||..|.+.|.. |.+|+ T Consensus 61 l~~d~~iVvyC~~~~~~~s~~aA~~L~~~Gf~--V~~l~ 97 (110) T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAELGFP--VKEMI 97 (110) T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCC--EEECC T ss_conf 79997189997899864179999999977997--48815 No 307 >pfam01451 LMWPc Low molecular weight phosphotyrosine protein phosphatase. Probab=39.16 E-value=25 Score=14.82 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=50.3 Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC--- Q ss_conf 88887531004675279733006857999999999871989999578876767899999999967764289829971--- Q gi|254780673|r 353 ATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTIT--- 429 (467) Q Consensus 353 a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~--- 429 (467) ..++.+.|++.||+..- +.-++|+.+. +.....+|+++++.. ..+.+. |......+..++ T Consensus 45 ~~~a~~vl~~~Gi~~~~---h~sr~l~~~~----~~~~DlIl~M~~~~~---------~~l~~~-~p~~~~k~~~l~~~~ 107 (140) T pfam01451 45 DPRAVEVLKEHGIDISG---HRARQITEEL----FNSFDLILTMDGEHA---------RQILPQ-APMVRGKVKLLGDPA 107 (140) T ss_pred CHHHHHHHHHHCCCCCC---CCCCCCCHHH----CCCCCEEEEECHHHH---------HHHHHH-CCCCCCEEEECCCCC T ss_conf 98899999983975578---7445475444----787999999681688---------988611-876544687634414 Q ss_pred -CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHC Q ss_conf -77788888966765608998999999999850 Q gi|254780673|r 430 -GRDVPMPYAANLEKLALPNVDEIIESVESICY 461 (467) Q Consensus 430 -~~d~p~P~~~~le~~~~p~~~~I~~av~~v~~ 461 (467) ..|+|-||...++.+ --..+.|-++++.... T Consensus 108 ~~~~I~DP~~~~~~~f-~~~~~~I~~~v~~ll~ 139 (140) T pfam01451 108 EQLDIDDPYYGDEDGF-EEVRDEIEERSKKLLK 139 (140) T ss_pred CCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHC T ss_conf 5999989999998999-9999999999999975 No 308 >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. Probab=39.12 E-value=25 Score=14.82 Aligned_cols=99 Identities=19% Similarity=0.231 Sum_probs=45.2 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH-HH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHH-HHHH- Q ss_conf 89989999887188644566666789-99-99999987886742117767888799830244576444433216-8876- Q gi|254780673|r 198 GFAGIGIGASFAGLKPIVEFMTFNFA-MQ-AIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCY-AAWY- 273 (467) Q Consensus 198 ~~~G~a~G~A~~G~~Piv~~~~~~f~-~~-a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~-~~~~- 273 (467) ..+|.|.++-+.|..-|+-..+.|=. .+ .|-.-+|.|+. +++||+|..-+-...-.-+.+.|+. ..+. T Consensus 130 ~A~G~A~a~k~~~~~~V~v~ffGDGA~~eG~fhEalN~Aa~--------~~LPviFv~eNN~yaist~~~~~~~~~~i~~ 201 (341) T TIGR03181 130 HAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGV--------FKAPVVFFVQNNQWAISVPRSKQTAAPTLAQ 201 (341) T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHH--------HCCCEEEEEEECCCCCCCCHHHHCCCCHHHH T ss_conf 14778889987299988999946886432469999999998--------3899899996177357776334237736987 Q ss_pred ----HHHCCCEEEEEECCHHCCCH---HHHHH---H-CCCCEEEECC Q ss_conf ----32203138665221000105---55654---1-3783476402 Q gi|254780673|r 274 ----SHVPGLKVVIPYTASDAKGL---LKAAI---R-DPNPVIFLEN 309 (467) Q Consensus 274 ----~~iPgl~V~~P~~~~d~~~l---l~~ai---~-~~~Pvi~le~ 309 (467) -.||+++| |.+|...+ .+.|+ | -.+|++ +|. T Consensus 202 ra~~yGi~~~~v----DG~D~~av~~a~~~Av~~~R~g~gP~l-iE~ 243 (341) T TIGR03181 202 KAIAYGIPGVQV----DGNDVLAVYAVTKEAVERARSGGGPTL-IEA 243 (341) T ss_pred HHHHCCCCEEEC----CCCCHHHHHHHHHHHHHHHHCCCCCEE-EEE T ss_conf 514249886744----885679999999999999855899889-999 No 309 >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Probab=38.99 E-value=25 Score=14.80 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=13.1 Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHCC Q ss_conf 069993243445886653236475408 Q gi|254780673|r 159 DVFIMGEEVAEYQGAYKVTQGLLQEFG 185 (467) Q Consensus 159 ~~~~~gedv~~~~g~f~~t~gl~~~fg 185 (467) -+++.|..+... ++...-+.|.+++| T Consensus 199 Pvil~G~gv~~~-~a~~~l~~lae~l~ 224 (548) T PRK08978 199 PVLYVGGGVGMA-QAVPALREFLAATG 224 (548) T ss_pred EEEEECCCCCCC-CHHHHHHHHHHHHC T ss_conf 299999670401-58999999999859 No 310 >cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Probab=38.81 E-value=25 Score=14.79 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=12.7 Q ss_pred HHHHHHHHHHHCCCCCEEEEEC Q ss_conf 8888887531004675279733 Q gi|254780673|r 351 TYATKAAIELEKNGIDAELIDL 372 (467) Q Consensus 351 ~~a~~aa~~L~~~gi~~~vid~ 372 (467) ..+..|++.|.+.|.. .|+|+ T Consensus 75 ~RS~~Aa~~L~~~Gf~-nV~ni 95 (117) T cd01522 75 NRSIAAAEAAAQAGFT-NVYNV 95 (117) T ss_pred CHHHHHHHHHHHCCCC-CEEEE T ss_conf 1599999999985987-77981 No 311 >PRK08341 amidophosphoribosyltransferase; Provisional Probab=38.36 E-value=26 Score=14.74 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=45.6 Q ss_pred EEEEECCCCCCCCHHHH-------HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCC Q ss_conf 27973300685799999-------99998719899995788767678999999999677642898299717778--8888 Q gi|254780673|r 367 AELIDLRTIRPMDWQTI-------FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPY 437 (467) Q Consensus 367 ~~vid~r~l~Pld~~~i-------~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~ 437 (467) -.-+.=.+|.|=+.+.- ++++-|-+++|+|||+...|--...|...|-+-+- +.--.|+++|.+ |+.| T Consensus 304 n~y~gRtFI~P~qR~~~v~~Kl~~~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGA---keVh~ri~sPpi~~pC~y 380 (442) T PRK08341 304 NRYIGRTFIMPSGRELKVKLKLSPVREVINGKRVVLVDDSIVRGTTMKRIVKMLRDAGA---REVHVRIASPPIRYPCYM 380 (442) T ss_pred CCCCCCCCCCCCCHHHCEEEEEEEEEEEECCCCEEEEECCEEECCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCC T ss_conf 01215544388730021044650100012798149961434105429999999997699---889999689985777767 Q ss_pred C Q ss_conf 9 Q gi|254780673|r 438 A 438 (467) Q Consensus 438 ~ 438 (467) + T Consensus 381 G 381 (442) T PRK08341 381 G 381 (442) T ss_pred C T ss_conf 6 No 312 >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated Probab=37.90 E-value=26 Score=14.69 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=28.3 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCC-CCCEECCC Q ss_conf 12235544311365069993243445886653236475408-11101166 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFG-CERVIDTP 193 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg-~~R~~d~p 193 (467) |+..++...++....++ ...++ |||.+..-...+.+|| .-+++|.- T Consensus 91 Ais~~l~~ll~~Gd~iv-~~~~~--YggT~~l~~~~l~~~Gi~~~~vd~~ 137 (433) T PRK08134 91 ALHLAIATLMGAGSHIV-ASSAL--YGGSHNLLHYTLPRFGIETTFVKPR 137 (433) T ss_pred HHHHHHHHHCCCCCEEE-ECCCE--ECCHHHHHHHHHHHCCEEEEEECCC T ss_conf 99999997489999899-71880--7737999998776348379998897 No 313 >KOG3424 consensus Probab=37.89 E-value=26 Score=14.69 Aligned_cols=56 Identities=18% Similarity=0.394 Sum_probs=35.4 Q ss_pred HHHHHHHHHHHHCCCCC-EEEEECCCCCCCCC----CC---CCCCHHHHCCCC-CEECCCCCHHHH Q ss_conf 00122355443113650-69993243445886----65---323647540811-101166662789 Q gi|254780673|r 143 REALRDAIAEEMRRDKD-VFIMGEEVAEYQGA----YK---VTQGLLQEFGCE-RVIDTPITEHGF 199 (467) Q Consensus 143 Rea~~~a~~e~m~~d~~-~~~~gedv~~~~g~----f~---~t~gl~~~fg~~-R~~d~pi~E~~~ 199 (467) .+-||+-|++....+|+ ||+||--- .|||- |+ -|.....+|-|. |+.-.+++|..- T Consensus 37 K~EIrEKlA~mYkt~~d~V~vfgfrt-~fGggkstgfalIYdsie~akkfEpkyrl~r~gl~e~~k 101 (132) T KOG3424 37 KTEIREKLAKMYKTTPDAVFVFGFRT-HFGGGKSTGFALIYDSVEYAKKFEPKYRLVRLGLAEKIK 101 (132) T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEE-CCCCCCCCEEEEEEEHHHHHHHCCCCEEEECCCCCHHCC T ss_conf 89999999999647877089988641-147865440456430589987248522300104411201 No 314 >PRK12309 transaldolase/EF-hand domain-containing protein; Provisional Probab=37.88 E-value=17 Score=15.98 Aligned_cols=22 Identities=41% Similarity=0.371 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHCCCCCEEEE Q ss_conf 8888888875310046752797 Q gi|254780673|r 349 GMTYATKAAIELEKNGIDAELI 370 (467) Q Consensus 349 ~~~~a~~aa~~L~~~gi~~~vi 370 (467) .+.+.++||+.|+++||.|.+- T Consensus 139 sTWEGI~Aa~~Le~eGI~cNlT 160 (391) T PRK12309 139 STWEGIKAAEVLEKEGIHCNLT 160 (391) T ss_pred CCHHHHHHHHHHHHCCCEEEEE T ss_conf 8789999999998659604366 No 315 >PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional Probab=37.85 E-value=26 Score=14.68 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=86.5 Q ss_pred CCCCCCEECCCCCEEEEE-CCCCCEEEEHH-HHHHHHHHHHHHHHCCCC---CEEEEECCCCCCCCHHH--HHHHHHHCC Q ss_conf 334663121443114443-16874586025-788888888753100467---52797330068579999--999998719 Q gi|254780673|r 319 VPMVDDLVIPIGRARIHR-QGSDVTIISFG-IGMTYATKAAIELEKNGI---DAELIDLRTIRPMDWQT--IFESVKKTG 391 (467) Q Consensus 319 ~p~~~~~~~p~Gk~~i~~-~G~ditii~~G-~~~~~a~~aa~~L~~~gi---~~~vid~r~l~Pld~~~--i~~sv~kt~ 391 (467) +|.+.-+..|+.-..+.+ .-++.+||+-- ..+..|...|+.|...++ ..-+++-|-.+|=..+. +.-.|+ -+ T Consensus 262 IPVDnL~a~pll~~y~~~~~l~n~VVVSPD~GgvkRAr~~A~~L~~~~i~d~~lAii~KrR~~~neve~m~iIGDVk-GK 340 (443) T PTZ00145 262 VPVDNLEAQLIGLDYFTKKDLYKPVIVSPDAGGVYRARKFQDGLNHRGIGDCGIAMLIKQRTKPNEIEKMDLVGNVY-DS 340 (443) T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCC-CC T ss_conf 86213652476799998459988889838997499999999985545567886599996559999366535575027-98 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH-----------------HHC-CCCCEEECCCCCCCCCCHH---HHHHCCCCHH Q ss_conf 899995788767678999999999677-----------------642-8982997177788888966---7656089989 Q gi|254780673|r 392 RLVTVEEGYPQSSVGSTIANQVQRKVF-----------------DYL-DAPILTITGRDVPMPYAAN---LEKLALPNVD 450 (467) Q Consensus 392 ~~i~vee~~~~gg~g~~i~~~i~e~~f-----------------~~L-~~p~~ri~~~d~p~P~~~~---le~~~~p~~~ 450 (467) .+|+||+=.-+||-=..-+..+.+++- ..| ++++..|-.-|+ +|.... .+|-...|.. T Consensus 341 ~~IIVDDmIDTgGTL~~AA~~Lke~GAk~VyA~aTHGVfSg~AierI~~S~I~evVVTDT-Ip~~~~~~~~~KI~vLSVA 419 (443) T PTZ00145 341 DVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIDRIEKSPLEEVVVTDT-VKSNKNIDSCKKITKLSVS 419 (443) T ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEECCC-CCCCCCCCCCCCCEEEEHH T ss_conf 789967743455679999999996799879999977307854898975489978998788-5783100238995798768 Q ss_pred HHH-HHHHHHHCCCCCC Q ss_conf 999-9999985020026 Q gi|254780673|r 451 EII-ESVESICYKRKAK 466 (467) Q Consensus 451 ~I~-~av~~v~~~~~~~ 466 (467) .++ ++++++.+..-++ T Consensus 420 ~LlAEAIrRIh~~eSVS 436 (443) T PTZ00145 420 VLVADAIRRIHQKESLN 436 (443) T ss_pred HHHHHHHHHHHCCCCHH T ss_conf 99999999861899789 No 316 >PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Probab=37.81 E-value=26 Score=14.68 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=26.5 Q ss_pred EHHHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCHHHHHHHHHHCCCEE Q ss_conf 025788888888753100--46752797330068579999999998719899 Q gi|254780673|r 345 SFGIGMTYATKAAIELEK--NGIDAELIDLRTIRPMDWQTIFESVKKTGRLV 394 (467) Q Consensus 345 ~~G~~~~~a~~aa~~L~~--~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i 394 (467) .||++-..|...++-|.+ +|+.++++|+..-. ...|+..+.+.+.++ T Consensus 257 myG~T~~mA~aia~gl~~~~~gv~V~~~d~~~~~---~s~i~~~i~~a~~~i 305 (395) T PRK11921 257 MWNSTRRMAEAIAEGIKKANPDVTVKLFNSAKSD---KNDIITEVFKSKAIL 305 (395) T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC---HHHHHHHHHHCCCEE T ss_conf 6067999999999999840899669999898899---999999998669589 No 317 >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional Probab=37.75 E-value=26 Score=14.67 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=7.5 Q ss_pred CCEEEEHHHHHHH Q ss_conf 7458602578888 Q gi|254780673|r 340 DVTIISFGIGMTY 352 (467) Q Consensus 340 ditii~~G~~~~~ 352 (467) |+.|++.|..-+. T Consensus 231 D~VivaiGv~Pnt 243 (400) T PRK09754 231 DVVIYGIGISAND 243 (400) T ss_pred CEEEECCCCCCCH T ss_conf 8999897675375 No 318 >cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. Probab=37.70 E-value=26 Score=14.67 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHHCCCEEEEEECCH Q ss_conf 899999999987886742117767888799830244576444-4332168876322031386652210 Q gi|254780673|r 222 FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAA-QHSQCYAAWYSHVPGLKVVIPYTAS 288 (467) Q Consensus 222 f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~-~Hs~~~~~~~~~iPgl~V~~P~~~~ 288 (467) +..++..|+-+.+-. ..+++-.-.++. +- +....++.++..-|=+-|+.=+|.. T Consensus 5 hm~k~~~~~~~~l~~----------sDlIl~V~DaR~---pl~~~~~~l~~~~~~K~~ilV~NK~DL~ 59 (171) T cd01856 5 HMAKALRQIKEKLKL----------VDLVIEVRDARI---PLSSRNPLLEKILGNKPRIIVLNKADLA 59 (171) T ss_pred HHHHHHHHHHHHHHH----------CCEEEEEEECCC---CCCCCCHHHHHHHCCCCEEEEEECCCCC T ss_conf 899999999999986----------999999998988---8876528999997689889998555558 No 319 >TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854 This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes.. Probab=37.49 E-value=17 Score=15.99 Aligned_cols=44 Identities=20% Similarity=0.479 Sum_probs=30.7 Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHH------HHHHHHHHHHHHHHHHHHH Q ss_conf 662789989999887188644566666------7899999999987886742 Q gi|254780673|r 194 ITEHGFAGIGIGASFAGLKPIVEFMTF------NFAMQAIDQIINSAAKTRY 239 (467) Q Consensus 194 i~E~~~~G~a~G~A~~G~~Piv~~~~~------~f~~~a~dqi~n~~ak~~~ 239 (467) |=.=++-|+.-=+||.|-||. |++. .|.+--+++|+..+++.-. T Consensus 72 IGkLAVcGTvNDvav~GA~P~--YLs~gfIlEEGfp~e~L~~iv~Sm~~~A~ 121 (345) T TIGR02124 72 IGKLAVCGTVNDVAVSGAKPL--YLSCGFILEEGFPIEDLERIVKSMAEAAR 121 (345) T ss_pred CCCEEEECCHHHHHHCCCHHH--HHCCCEEEEECCCHHHHHHHHHHHHHHHH T ss_conf 111777333246753384457--85072013407876789999999999999 No 320 >TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process. Probab=37.47 E-value=26 Score=14.67 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=20.1 Q ss_pred HHHHCCCEEEEEECCHHCCCHHHHHHHCC Q ss_conf 63220313866522100010555654137 Q gi|254780673|r 273 YSHVPGLKVVIPYTASDAKGLLKAAIRDP 301 (467) Q Consensus 273 ~~~iPgl~V~~P~~~~d~~~ll~~ai~~~ 301 (467) |.++-|.+||+-.=.--+=..+++|||.. T Consensus 287 ~~~~~Gk~VVVLGGGDTaMDCvRTaiR~G 315 (480) T TIGR01318 287 LIDVEGKRVVVLGGGDTAMDCVRTAIRLG 315 (480) T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHC T ss_conf 42347766898588875257889999817 No 321 >PRK09246 amidophosphoribosyltransferase; Provisional Probab=37.11 E-value=27 Score=14.61 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=50.0 Q ss_pred HHHHHHHHHHHHHHC---CCC-CEEEEECCCCCCCCHH---HH------HHHHHHCCCEEEEECCCCCCCHHHHHHHHHH Q ss_conf 788888888753100---467-5279733006857999---99------9999871989999578876767899999999 Q gi|254780673|r 348 IGMTYATKAAIELEK---NGI-DAELIDLRTIRPMDWQ---TI------FESVKKTGRLVTVEEGYPQSSVGSTIANQVQ 414 (467) Q Consensus 348 ~~~~~a~~aa~~L~~---~gi-~~~vid~r~l~Pld~~---~i------~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~ 414 (467) +....|+.-|+.+.- +|+ .-.-+.=.||.|=+.. .+ ++++-|-+|+|+|||+...|--...|...+- T Consensus 303 Sg~~aA~gya~~sgipy~~gliKNrYvgRTFI~P~q~~R~~~vr~Kln~i~~~i~gK~vvlVDDSIVRGtT~k~Iv~~Lr 382 (503) T PRK09246 303 TSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTTSEQIVQMAR 382 (503) T ss_pred CCHHHHHHHHHHCCCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHCEECCHHHCCCCEEEEEECCEECCCCHHHHHHHHH T ss_conf 71889999999719961201210365576776986889998676520036431569769998455311641999999999 Q ss_pred HHHHHHCCCCCEEECCCCC--CCCCC Q ss_conf 9677642898299717778--88889 Q gi|254780673|r 415 RKVFDYLDAPILTITGRDV--PMPYA 438 (467) Q Consensus 415 e~~f~~L~~p~~ri~~~d~--p~P~~ 438 (467) +.+- +.--.|+++|.+ |+.|+ T Consensus 383 ~aGA---keVh~riasPpi~~Pc~yG 405 (503) T PRK09246 383 DAGA---KKVYFASAAPPVRYPNVYG 405 (503) T ss_pred HCCC---CEEEEEECCCCCCCCCCCC T ss_conf 7599---8899996799857877673 No 322 >TIGR02104 pulA_typeI pullulanase, type I; InterPro: IPR011840 Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the entries in IPR011838 from INTERPRO and IPR011839 from INTERPRO but having a different domain architecture with shorter sequences. Members are called type I pullulanases .. Probab=37.01 E-value=21 Score=15.30 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=24.5 Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEEEECCCCC Q ss_conf 859999537533343177786898998237885 Q gi|254780673|r 34 DIIYEVETDKAVMEVESIDEGILGKILCPNGTK 66 (467) Q Consensus 34 d~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e 66 (467) +.=++-.-+|.++-|=||.+=.|.=+|.+.+++ T Consensus 12 ~LG~~Y~~~~T~F~~WaPtA~~V~l~lY~~~~~ 44 (655) T TIGR02104 12 ELGAVYTPEKTTFRVWAPTATEVKLLLYKSGED 44 (655) T ss_pred EEEEEECCCCCEEEEECCCCCEEEEEEEECCCC T ss_conf 140288677468998668555689999713688 No 323 >TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit; InterPro: IPR012754 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the beta-prime subunit, RpoC, found in most bacteria. It excludes some, mainly cyanobacterial, species where RpoC is replaced by two homologous proteins that include an additional domain. One arm of the "claw" is predominantly formed by this subunit, the other being predominantly formed by the beta subunit. The active site of the enzyme is defined by three invariant aspartate residues within the beta-prime subunit .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription. Probab=37.00 E-value=26 Score=14.73 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=13.2 Q ss_pred CCCEEEEEEECCCCCCCCCCCEEEEEE Q ss_conf 786898998237885132697589994 Q gi|254780673|r 52 DEGILGKILCPNGTKNVKVNTPIAAIL 78 (467) Q Consensus 52 ~~G~i~~ilv~eG~e~V~VG~~ia~i~ 78 (467) ..|++ |+|.+| +.|.-|++||.++ T Consensus 1186 ~~G~~--i~V~~g-~~V~~G~~~aefD 1209 (1552) T TIGR02386 1186 KLGTK--ILVEDG-DAVKEGQRIAEFD 1209 (1552) T ss_pred CCCCE--EEEECC-CCCCCCCEEEEEC T ss_conf 65668--886158-6205887578844 No 324 >PRK07178 acetyl-CoA carboxylase; Validated Probab=36.93 E-value=27 Score=14.59 Aligned_cols=11 Identities=9% Similarity=0.452 Sum_probs=4.7 Q ss_pred CCCEEEEEECC Q ss_conf 88879983024 Q gi|254780673|r 246 TTSIVFRGPNG 256 (467) Q Consensus 246 ~~p~v~r~p~G 256 (467) .-|++++...| T Consensus 151 GyPV~lKAa~G 161 (471) T PRK07178 151 GYPVMLKATSG 161 (471) T ss_pred CCCEEEEECCC T ss_conf 98158632026 No 325 >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Probab=36.89 E-value=27 Score=14.58 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=9.8 Q ss_pred CCCEEEEEC----CCCCCCHHH Q ss_conf 198999957----887676789 Q gi|254780673|r 390 TGRLVTVEE----GYPQSSVGS 407 (467) Q Consensus 390 t~~~i~vee----~~~~gg~g~ 407 (467) .+|++.+=| ..+.+|-|- T Consensus 278 ~~rv~LiGDAAH~~~P~aGQG~ 299 (384) T PRK08849 278 KNNCVLLGDAAHTINPLAGQGV 299 (384) T ss_pred CCCEEEECCHHHCCCCCCCCCH T ss_conf 6888997252334697212524 No 326 >PRK07282 acetolactate synthase catalytic subunit; Reviewed Probab=36.56 E-value=27 Score=14.55 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=12.6 Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHCCCCCEECC Q ss_conf 699932434458866532364754081110116 Q gi|254780673|r 160 VFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDT 192 (467) Q Consensus 160 ~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~ 192 (467) +++.|..+. ..++.+.-..|.+++| --|+.| T Consensus 214 vii~G~g~~-~~~a~~~l~~lae~l~-iPv~tt 244 (566) T PRK07282 214 VILAGGGIN-YAEAAKELVEFAERYQ-IPVVTS 244 (566) T ss_pred EEEECCCCC-HHHHHHHHHHHHHHHC-CCEEEE T ss_conf 899888837-2459999999999869-989950 No 327 >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase; InterPro: IPR011282 This entry represents a narrowly defined clade of animal and bacterial (almost exclusively proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homologue from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.; GO: 0008890 glycine C-acetyltransferase activity. Probab=36.48 E-value=28 Score=14.54 Aligned_cols=122 Identities=19% Similarity=0.238 Sum_probs=61.9 Q ss_pred HHHHHHHHHHC--CCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCC--CCCEECCCCCEEEEEC-CCCC Q ss_conf 21688763220--31386652210001055565413783476402123333345334--6631214431144431-6874 Q gi|254780673|r 267 QCYAAWYSHVP--GLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFEVPM--VDDLVIPIGRARIHRQ-GSDV 341 (467) Q Consensus 267 ~~~~~~~~~iP--gl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~~p~--~~~~~~p~Gk~~i~~~-G~di 341 (467) ..+|.-++..= -=+|++||+.----||+++.+-..+-||- -..+. .-|- +.+=||+.+|- -.|. T Consensus 88 K~LE~~iA~F~~~EDtILY~scFDANgGlFE~LLg~eDAiiS----------DaLNHASIIDG-vRLCKAkrYRY~~~dm 156 (395) T TIGR01822 88 KELEAKIAAFLGTEDTILYASCFDANGGLFETLLGEEDAIIS----------DALNHASIIDG-VRLCKAKRYRYANNDM 156 (395) T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHCCCCCCCHH----------HHHCCCHHHHH-HHHHHHHHHHHHCCCH T ss_conf 899999999716530445456663055422010475442210----------22243102300-3542233432305888 Q ss_pred EEEEHHHHHHHHHHH--HHHHHCCCCCEE-EEEC-CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH Q ss_conf 586025788888888--753100467527-9733-00685799999999987198999957887676789 Q gi|254780673|r 342 TIISFGIGMTYATKA--AIELEKNGIDAE-LIDL-RTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGS 407 (467) Q Consensus 342 tii~~G~~~~~a~~a--a~~L~~~gi~~~-vid~-r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~ 407 (467) .=+- ..+++|.+. ...| |..+ |+.| =.|.||| .|.....|++.||.|||++-+|=+|. T Consensus 157 ~dLe--~~L~~A~~~Gar~~L----i~tDGvFSMDG~iA~L~--~i~~LA~~Y~ALv~~DecHA~GflG~ 218 (395) T TIGR01822 157 ADLE--AQLKEAQAAGARHRL----IATDGVFSMDGTIAPLD--EICDLADKYDALVMVDECHATGFLGA 218 (395) T ss_pred HHHH--HHHHHHHHCCCCEEE----EEECCEEECCCCEECHH--HHHHHHHHCCCEEEEECCCCCCCCCC T ss_conf 8999--999999973895899----86466020687310767--89999985598788744334233278 No 328 >PRK06460 hypothetical protein; Provisional Probab=36.48 E-value=28 Score=14.54 Aligned_cols=46 Identities=13% Similarity=0.396 Sum_probs=27.8 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCC Q ss_conf 1223554431136506999324344588665323647540811-101166 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTP 193 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~p 193 (467) |+.-++...++....++ ...++ |||.+..-++++.+||=+ +++|.- T Consensus 72 Ai~~~l~~~l~~Gdhiv-~~~~~--Yg~t~~l~~~~l~~~Gv~v~~~d~~ 118 (375) T PRK06460 72 AISTTLLTLLKPGSSVL-IHRDM--FGRSYRFFTDFLRNWGVKVEVARPG 118 (375) T ss_pred HHHHHHHHHHCCCCEEE-ECCCC--CCCHHHHHHHHHHHCCEEEEEECCC T ss_conf 99999999728999899-71787--5867999999987378677973899 No 329 >cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD, Probab=36.39 E-value=28 Score=14.53 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=12.6 Q ss_pred CCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCC Q ss_conf 4431144431687458602578888888875310046 Q gi|254780673|r 328 PIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNG 364 (467) Q Consensus 328 p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~g 364 (467) |+|+.--..+.+++.+|+=|..+---+..++.|.+.| T Consensus 87 PlG~~f~~~~~~~~llVaGGiG~APl~~la~~l~~~g 123 (248) T cd06219 87 PLGKPSEIENYGTVVFVGGGVGIAPIYPIAKALKEAG 123 (248) T ss_pred CCCCCCCCCCCCEEEEECCCEECCCHHHHHHHHHHCC T ss_conf 6888745078961999847352253599999999879 No 330 >TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein; InterPro: IPR013459 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of the gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.. Probab=36.32 E-value=22 Score=15.25 Aligned_cols=120 Identities=20% Similarity=0.125 Sum_probs=54.8 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHH-HHHHHHCCCCCHHHHHHHHH Q ss_conf 01223554431136506999324344588665323647540811101166662789989-99988718864456666678 Q gi|254780673|r 144 EALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGI-GIGASFAGLKPIVEFMTFNF 222 (467) Q Consensus 144 ea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~-a~G~A~~G~~Piv~~~~~~f 222 (467) +||--|+...|+|+=.|+-|.=||.+ .-|-+-.-=|....+|- .+=++..-+. .-..+| T Consensus 68 dAlvpalkkA~~rgI~Vv~~DS~v~p----------------egR~l~~n~a~~~~IG~~~vql~A~~~~----~~kG~~ 127 (307) T TIGR02637 68 DALVPALKKAMKRGIKVVTWDSGVAP----------------EGRKLFLNQADAELIGRTQVQLAAEQLE----EGKGEI 127 (307) T ss_pred CHHHHHHHHHHHCCCEEEEECCCCCC----------------CCCEEEECCCCHHHHHHHHHHHHHHHHC----CCCCCE T ss_conf 22789999998569829985278881----------------3454422646831288999999999717----898858 Q ss_pred HHH-HHHHHHHHHHHHHHHC----CC-CCCCCEEEEEECCCCCCCCHHHHH-HHHHHHHHHCCCEE-EEEECC Q ss_conf 999-9999998788674211----77-678887998302445764444332-16887632203138-665221 Q gi|254780673|r 223 AMQ-AIDQIINSAAKTRYMS----GG-QITTSIVFRGPNGAAARVAAQHSQ-CYAAWYSHVPGLKV-VIPYTA 287 (467) Q Consensus 223 ~~~-a~dqi~n~~ak~~~~~----gg-~~~~p~v~r~p~G~~~~~g~~Hs~-~~~~~~~~iPgl~V-~~P~~~ 287 (467) +.+ |-.---|+-+=..+|- .- .-.+.+|-. .++.+-.+-|- .=..+|.+-|||+. ++|.|. T Consensus 128 AILSAa~T~tNQN~WI~~mK~~Lk~p~y~~~kLV~~----vYGDD~~~KS~~ea~GLl~s~PNlK~IiaPTTV 196 (307) T TIGR02637 128 AILSAASTATNQNAWIEIMKKELKDPKYPKVKLVAV----VYGDDDAEKSYQEAQGLLKSYPNLKGIIAPTTV 196 (307) T ss_pred EEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE----EECCCCHHHHHHHHHHHHHCCCCCEEEECCCHH T ss_conf 885033100146799999997547877888307999----846780341188861365428971278787638 No 331 >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Probab=36.21 E-value=28 Score=14.51 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=42.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH-HHHH-HHHHHHCCCEEEEEECCHHCCCHHHHHH Q ss_conf 7899999999987886742117767888799830244576444433-2168-8763220313866522100010555654 Q gi|254780673|r 221 NFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHS-QCYA-AWYSHVPGLKVVIPYTASDAKGLLKAAI 298 (467) Q Consensus 221 ~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~~-~~~~~iPgl~V~~P~~~~d~~~ll~~ai 298 (467) +|.-=..++....+++...-+.|....|+.+-|+ .|.|-+|- |... ..+.+-|+.+|++-+... ...-+-.++ T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~----~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~-f~~~~v~a~ 162 (408) T COG0593 88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGG----VGLGKTHLLQAIGNEALANGPNARVVYLTSED-FTNDFVKAL 162 (408) T ss_pred HEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECC----CCCCHHHHHHHHHHHHHHHCCCCEEEECCHHH-HHHHHHHHH T ss_conf 2204774499999999987566886895799879----99978999999999998629986488504899-899999998 Q ss_pred HC Q ss_conf 13 Q gi|254780673|r 299 RD 300 (467) Q Consensus 299 ~~ 300 (467) ++ T Consensus 163 ~~ 164 (408) T COG0593 163 RD 164 (408) T ss_pred HH T ss_conf 85 No 332 >cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus. Probab=36.18 E-value=28 Score=14.51 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=13.2 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE Q ss_conf 52797330068579999999998719899995 Q gi|254780673|r 366 DAELIDLRTIRPMDWQTIFESVKKTGRLVTVE 397 (467) Q Consensus 366 ~~~vid~r~l~Pld~~~i~~sv~kt~~~i~ve 397 (467) +++++|.-+.- -.++.......++|+|| T Consensus 32 ~v~~id~gt~g----~~ll~~~~~~~~vIiVD 59 (146) T cd06063 32 HVRLVDCGTAG----MEVMFRARGAKQLIIID 59 (146) T ss_pred CEEEEECCCCH----HHHHHHHCCCCEEEEEE T ss_conf 85999888836----88886433788379999 No 333 >PRK13984 putative oxidoreductase; Provisional Probab=35.78 E-value=28 Score=14.47 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=38.0 Q ss_pred EEEECCCCCEEEEHHHHHHHHHHHHHHHHCC---CCCEEEEECC-C--CCCCCHHHHHHHHHH Q ss_conf 4443168745860257888888887531004---6752797330-0--685799999999987 Q gi|254780673|r 333 RIHRQGSDVTIISFGIGMTYATKAAIELEKN---GIDAELIDLR-T--IRPMDWQTIFESVKK 389 (467) Q Consensus 333 ~i~~~G~ditii~~G~~~~~a~~aa~~L~~~---gi~~~vid~r-~--l~Pld~~~i~~sv~k 389 (467) ....-|+.+.+|+=|++-..|...|..|... ..++.++..| + -.|-+.+.+..+.+. T Consensus 413 ~~~~~gK~VVVIGGGnTAmDcaRTA~Rl~a~~~Ga~~V~vv~yrR~~~eMPA~~~Ev~~A~EE 475 (604) T PRK13984 413 PKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGKVNVTVTSLERTFEEMPADMEEIEEGLEE 475 (604) T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHCCCCHHHHHHHHHC T ss_conf 766669758998981889999999987301324774305517878734289988988999868 No 334 >PRK06965 acetolactate synthase 3 catalytic subunit; Validated Probab=35.63 E-value=28 Score=14.45 Aligned_cols=14 Identities=0% Similarity=0.100 Sum_probs=6.4 Q ss_pred CHHHHHHHHHHHHC Q ss_conf 98999999999850 Q gi|254780673|r 448 NVDEIIESVESICY 461 (467) Q Consensus 448 ~~~~I~~av~~v~~ 461 (467) +.+++-.++++.+. T Consensus 536 ~~~eL~~al~~Al~ 549 (587) T PRK06965 536 KTSDVEPALKEALR 549 (587) T ss_pred CHHHHHHHHHHHHH T ss_conf 99999999999986 No 335 >TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein; InterPro: IPR005696 Bacteriocins are antibacterial proteinaceous compounds produced by bacteria. In Gram-positive bacteria, they are divided into four classes. Within the class II, constituted by non-modified peptides produced mainly by lactic acid bacteria, bacteriocins of the subclass IIa, such as mesentericin Y105, are of particular interest. They are active against the foodborne pathogen Listeria monocytogenes and share a similar primary structure, with a conserved N-terminal motif (YGNGV). Subclass IIa bacteriocins induce membrane permeabilization of sensitive strains, but their target specificity and their molecular mode of action remain elusive. This family of proteins is involved in the secretion of such bacteriocins although the mechanism of this process is not well understood. ; GO: 0005215 transporter activity, 0006810 transport. Probab=35.49 E-value=13 Score=16.95 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=31.5 Q ss_pred EEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCC Q ss_conf 999537533343177786898998237885132697589994377 Q gi|254780673|r 37 YEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEG 81 (467) Q Consensus 37 ~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~eg 81 (467) ++|++-|..-.+=|+..-.|.+-.-.|| ..|+-|+.|....... T Consensus 52 g~~~p~~~~~~iQst~n~~I~~N~L~En-k~VKKG~~Lv~y~~~~ 95 (476) T TIGR01000 52 GSIEPAKVIAKIQSTSNNAIKENYLKEN-KFVKKGDLLVVYTNTN 95 (476) T ss_pred EEECCCCCCHHHCCCCCCHHHHHHHHHC-CEEECCCEEEEEECCH T ss_conf 2661432012122884214565133209-7883387899971743 No 336 >TIGR00107 deoD purine nucleoside phosphorylase; InterPro: IPR004402 Purine nucleoside phosphorylase 2.4.2.1 from EC also called inosine phosphorylase (pnp) cleave guanosine or inosine to respective bases and sugar-1-phosphate molecules. These enzymes are involved in the salvage of nucleotides and nucleosides.; GO: 0004731 purine-nucleoside phosphorylase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process. Probab=35.17 E-value=29 Score=14.40 Aligned_cols=57 Identities=25% Similarity=0.207 Sum_probs=40.7 Q ss_pred CCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCC---CCCCHHHHHHHHHHCCCEEEEECC Q ss_conf 8745860257888888887531004675279733006---857999999999871989999578 Q gi|254780673|r 339 SDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTI---RPMDWQTIFESVKKTGRLVTVEEG 399 (467) Q Consensus 339 ~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l---~Pld~~~i~~sv~kt~~~i~vee~ 399 (467) .|...++--.++..|.++|+.+ |++..|=++-|- .-.|.+ .++..+|.+.|=|==|. T Consensus 122 ~D~~~~Adf~L~~~A~~tAk~~---g~~~~vG~vF~~D~FY~~~~~-~~~~~~ky~~LaVEMEA 181 (234) T TIGR00107 122 EDFAAIADFELVELAYDTAKAL---GIDVRVGNVFSADAFYSPDKD-VFDLMAKYGILAVEMEA 181 (234) T ss_pred CCCCCCCCHHHHHHHHHHHHHC---CCCEEECCEECCCCCCCCCHH-HHHHHHHCCCCEEHHHH T ss_conf 4433478989999999999867---972776523311113074488-99999875987223768 No 337 >PRK08199 acetolactate synthase 2 catalytic subunit; Validated Probab=35.16 E-value=29 Score=14.40 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=17.3 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC Q ss_conf 6506999324344588665323647540811101166 Q gi|254780673|r 157 DKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP 193 (467) Q Consensus 157 d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p 193 (467) ..-+++.|..+... ++...-..|.+++|- .|+.|+ T Consensus 199 krPvii~G~g~~~~-~a~~~l~~lae~lg~-Pv~tt~ 233 (553) T PRK08199 199 ERPLVILGGSGWTP-AAVADLRAFAERWGL-PVATAF 233 (553) T ss_pred CCCEEEECCCCCCH-HHHHHHHHHHHHHCC-CEEECC T ss_conf 89889937873554-799999999998598-889514 No 338 >PRK10310 galactitol-specific PTS system component IIB; Provisional Probab=34.96 E-value=29 Score=14.38 Aligned_cols=32 Identities=34% Similarity=0.403 Sum_probs=21.7 Q ss_pred EEEEHHHHHHHHHHHHHH----HHCCCCCEEEEECC Q ss_conf 586025788888888753----10046752797330 Q gi|254780673|r 342 TIISFGIGMTYATKAAIE----LEKNGIDAELIDLR 373 (467) Q Consensus 342 tii~~G~~~~~a~~aa~~----L~~~gi~~~vid~r 373 (467) -||++|+.+-.+.-++++ |+++||++++...+ T Consensus 5 IlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~ 40 (94) T PRK10310 5 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR 40 (94) T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE T ss_conf 999858837599999999999999859806899974 No 339 >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed Probab=34.94 E-value=29 Score=14.38 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=28.0 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCCCCH Q ss_conf 1223554431136506999324344588665323647540811-101166662 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTPITE 196 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~pi~E 196 (467) |+.-++...++....++ ...++ |||.+..-+.++.+||=+ +++|..--| T Consensus 92 Ai~~~lla~l~~Gdhiv-~~~~~--Yg~t~~l~~~~l~~~Gi~~~~vd~~d~~ 141 (397) T PRK07504 92 AVTAAILCQLKAGDHVV-AARAL--FGSCRYVVETLLPRYGIESTLVDGLDLD 141 (397) T ss_pred HHHHHHHHHCCCCCEEE-ECCCC--CHHHHHHHHHHHHCCCEEEEEECCCCHH T ss_conf 99999998558999898-55887--5569999999986078589987898858 No 340 >PRK07847 amidophosphoribosyltransferase; Provisional Probab=34.88 E-value=29 Score=14.37 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=37.7 Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC Q ss_conf 99998719899995788767678999999999677642898299717778--88889 Q gi|254780673|r 384 FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA 438 (467) Q Consensus 384 ~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~ 438 (467) ++++-|-+++|+|||+...|--...|...+-+.+- +.--.|+++|.+ |+.|+ T Consensus 336 i~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGA---keVh~riasPpi~~PC~YG 389 (489) T PRK07847 336 LREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGA---AEVHVRIASPPVKWPCFYG 389 (489) T ss_pred CHHEECCCEEEEECCCCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC T ss_conf 26417798799984783566779999999997699---8899996899857887674 No 341 >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. Probab=34.86 E-value=24 Score=14.91 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=15.7 Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCHHC Q ss_conf 7998302445764444332168876322--03138665221000 Q gi|254780673|r 249 IVFRGPNGAAARVAAQHSQCYAAWYSHV--PGLKVVIPYTASDA 290 (467) Q Consensus 249 ~v~r~p~G~~~~~g~~Hs~~~~~~~~~i--Pgl~V~~P~~~~d~ 290 (467) +++-||.|.+ -+ -.+.+++.++ ++.+|+.--||.+. T Consensus 83 ilitGptGSG----Kt--Ttl~a~l~~~~~~~~~i~tiEdPvE~ 120 (264) T cd01129 83 ILVTGPTGSG----KT--TTLYSALSELNTPEKNIITVEDPVEY 120 (264) T ss_pred EEEECCCCCC----HH--HHHHHHHHHHCCCCCEEEEEECCCCC T ss_conf 9997899997----79--99999998643688508998676314 No 342 >COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism] Probab=34.70 E-value=29 Score=14.35 Aligned_cols=96 Identities=18% Similarity=0.256 Sum_probs=54.4 Q ss_pred CEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCE----E-EEECCCCCC------CHHHHH Q ss_conf 45860257888888887531004675279733006857999999999871989----9-995788767------678999 Q gi|254780673|r 341 VTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRL----V-TVEEGYPQS------SVGSTI 409 (467) Q Consensus 341 itii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~----i-~vee~~~~g------g~g~~i 409 (467) +||..+-+.- .|.+|-.-|++.||..+++|... .|++.+.+.+-+++++-- + +-..-++.- ---.++ T Consensus 3 itiy~~p~C~-t~rka~~~L~~~gi~~~~~~~~~-~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~~~~~~~~~~ 80 (117) T COG1393 3 ITIYGNPNCS-TCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKLGDGVEELINTRGTTYRELNLDKEDLSDEEL 80 (117) T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCCCEEEEEEC-CCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCCCCCCCHHHH T ss_conf 8997279875-89999999998699967988206-999999999999984846999987145058775875323586999 Q ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCCCHH Q ss_conf 9999996776428982997177788888966 Q gi|254780673|r 410 ANQVQRKVFDYLDAPILTITGRDVPMPYAAN 440 (467) Q Consensus 410 ~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~ 440 (467) +..+.++- ..++.|+. +....+-+-|... T Consensus 81 ~~~i~~~~-~LikRPiv-v~~~~~~iG~~~e 109 (117) T COG1393 81 IEALLENP-SLIKRPIV-VDNKKLRVGFNEE 109 (117) T ss_pred HHHHHHCH-HHHCCCEE-EECCCEEECCCHH T ss_conf 99998583-44048769-8599468548999 No 343 >PRK12902 secA preprotein translocase subunit SecA; Reviewed Probab=34.11 E-value=30 Score=14.29 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=47.7 Q ss_pred EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEC Q ss_conf 44316874586025788888888753100467527973300685799999999987198999957 Q gi|254780673|r 334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEE 398 (467) Q Consensus 334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee 398 (467) ++..|.-|.|-+ ..+..+...+..|.+.||...|.|.+.=..-.+..|+.-..+-|.+-+... T Consensus 440 ~~~~gqPVLVGT--~SVe~SE~ls~lL~~~gi~h~VLNAk~~n~~~EAeIIA~AG~~gaVTIATN 502 (946) T PRK12902 440 MHKQGRPVLVGT--TSVEKSELLSALLAEQGIPHNLLNAKPENVEREAEIVAQAGRKGAVTIATN 502 (946) T ss_pred HHHCCCCEEEEE--CCHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEECC T ss_conf 975899889972--757989999999985588620325786442789999994699996897454 No 344 >KOG2891 consensus Probab=33.93 E-value=12 Score=17.16 Aligned_cols=55 Identities=29% Similarity=0.457 Sum_probs=32.7 Q ss_pred CHHHHCCCCCEECCCCCHH---HHHHHHHHHHHCCCC--------CHHHHHHHHHHHHHHHHHHHH Q ss_conf 6475408111011666627---899899998871886--------445666667899999999987 Q gi|254780673|r 179 GLLQEFGCERVIDTPITEH---GFAGIGIGASFAGLK--------PIVEFMTFNFAMQAIDQIINS 233 (467) Q Consensus 179 gl~~~fg~~R~~d~pi~E~---~~~G~a~G~A~~G~~--------Piv~~~~~~f~~~a~dqi~n~ 233 (467) .-.++||.-|+.|.||+.. -|.|--.|.-.-||- ..|.||-+--..+|||.++|. T Consensus 180 ~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~ 245 (445) T KOG2891 180 KAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGM 245 (445) T ss_pred HHHHHHCCCEECCCCCCCHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999973650213775565668884376445032034557511389999999987599999987232 No 345 >cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. Probab=33.80 E-value=30 Score=14.25 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=20.6 Q ss_pred CCEEEEHH-HHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 74586025-788888888753100467527973 Q gi|254780673|r 340 DVTIISFG-IGMTYATKAAIELEKNGIDAELID 371 (467) Q Consensus 340 ditii~~G-~~~~~a~~aa~~L~~~gi~~~vid 371 (467) |+-|+..| .....|++.+..|.+.||.+++-. T Consensus 3 dv~ii~~~~~~~~~a~~i~~~LR~~gi~v~~~~ 35 (91) T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDY 35 (91) T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 899998186999999999999998899399973 No 346 >COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion] Probab=33.79 E-value=30 Score=14.25 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=8.9 Q ss_pred CCCCEECCCCEEEEEECCC Q ss_conf 7897625898599995375 Q gi|254780673|r 25 NEGDLIKQGDIIYEVETDK 43 (467) Q Consensus 25 k~GD~V~~gd~l~eiETDK 43 (467) .+|-.++.+|-|+.|.-.. T Consensus 27 ~~g~V~sv~DgIa~v~Gl~ 45 (504) T COG0056 27 EVGTVISVGDGIARVSGLE 45 (504) T ss_pred CCCEEEEEECCEEEEECCC T ss_conf 1644999725469994474 No 347 >PRK08979 acetolactate synthase 3 catalytic subunit; Validated Probab=33.76 E-value=30 Score=14.25 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=7.5 Q ss_pred CHHHHHHHHHHHHC Q ss_conf 98999999999850 Q gi|254780673|r 448 NVDEIIESVESICY 461 (467) Q Consensus 448 ~~~~I~~av~~v~~ 461 (467) +.+++-+|+++.+. T Consensus 520 ~~~el~~Al~~Al~ 533 (572) T PRK08979 520 DPAELESGLAKALA 533 (572) T ss_pred CHHHHHHHHHHHHH T ss_conf 99999999999985 No 348 >COG0094 RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Probab=33.68 E-value=5.8 Score=19.29 Aligned_cols=135 Identities=22% Similarity=0.322 Sum_probs=61.5 Q ss_pred CCEECCCCCHH-----HHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC Q ss_conf 11011666627-----89989999-8871886445666667899999999987886742117767888799830244576 Q gi|254780673|r 187 ERVIDTPITEH-----GFAGIGIG-ASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR 260 (467) Q Consensus 187 ~R~~d~pi~E~-----~~~G~a~G-~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~ 260 (467) +=++|+++-|+ .+...+.= ..+.|-||++... .++.+.|..+.|-.+.+-|++|+ T Consensus 33 KvvvNmGvGea~~d~k~l~~A~~~L~~ItGQKPv~tkA------------kksia~FkiR~g~pIG~KVTLRg------- 93 (180) T COG0094 33 KVVVNMGVGEAAADGKRLEKAAKDLELITGQKPVITKA------------KKSIAGFKIREGMPIGVKVTLRG------- 93 (180) T ss_pred EEEEECCCHHHHHCHHHHHHHHHHHHHHHCCCCEEEEH------------HCCCCCCCCCCCCEEEEEEEECH------- T ss_conf 99997553232214489999999999986898656201------------13554566227973268999764------- Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCC--CCCCCCCCEECCCCCEEEEECC Q ss_conf 44443321688763220313866522100010555654137834764021233333--4533466312144311444316 Q gi|254780673|r 261 VAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSS--FEVPMVDDLVIPIGRARIHRQG 338 (467) Q Consensus 261 ~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~--~~~p~~~~~~~p~Gk~~i~~~G 338 (467) +...-++-. -+.|+.|. -.|.+|+-..++...+-+-| |-. ...|+.+ | .+. +--.| T Consensus 94 ------~rm~eFL~r--l~~i~lPr-vrdfrGls~~sFDg~GN~sf-------GI~E~i~FPei~-y----D~~-~~i~G 151 (180) T COG0094 94 ------ERMYEFLDR--LLNIALPR-VRDFRGLSPKSFDGRGNYSF-------GIKEQIIFPEID-Y----DPI-IGIRG 151 (180) T ss_pred ------HHHHHHHHH--HHHHHCCC-CCCCCCCCCCCCCCCCCEEE-------CCCCEEECCCCC-C----CCC-CCCCC T ss_conf ------889999999--99763544-22346778566379785576-------650124067645-6----766-77267 Q ss_pred CCCEEEEHHHHHHHHHHHHHHHHCCCC Q ss_conf 874586025788888888753100467 Q gi|254780673|r 339 SDVTIISFGIGMTYATKAAIELEKNGI 365 (467) Q Consensus 339 ~ditii~~G~~~~~a~~aa~~L~~~gi 365 (467) =|+||++.-..-. ++...|...++ T Consensus 152 Mdi~ivtta~~d~---e~R~ll~~~~~ 175 (180) T COG0094 152 MDITIVTTAKGDV---EARALLSAFGI 175 (180) T ss_pred CEEEEEECCCCHH---HHHHHHHHCCC T ss_conf 4289995279719---99999985599 No 349 >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=33.65 E-value=30 Score=14.24 Aligned_cols=16 Identities=13% Similarity=-0.099 Sum_probs=8.5 Q ss_pred EEEEECCCCCEECCCC Q ss_conf 9877417897625898 Q gi|254780673|r 19 IAKWKKNEGDLIKQGD 34 (467) Q Consensus 19 i~~W~vk~GD~V~~gd 34 (467) +++++++-|-.|..-| T Consensus 27 ~a~~L~~~G~~v~~~D 42 (487) T PRK03369 27 VLAALTRFGARPTVCD 42 (487) T ss_pred HHHHHHHCCCEEEEEE T ss_conf 9999997869799998 No 350 >cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase. Probab=33.61 E-value=31 Score=14.23 Aligned_cols=77 Identities=23% Similarity=0.287 Sum_probs=47.7 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EE-EEECCCCCCC------H-HHHHHHHHHHHHH Q ss_conf 888888753100467527973300685799999999987198----99-9957887676------7-8999999999677 Q gi|254780673|r 351 TYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LV-TVEEGYPQSS------V-GSTIANQVQRKVF 418 (467) Q Consensus 351 ~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i-~vee~~~~gg------~-g~~i~~~i~e~~f 418 (467) ..|.+|-+.|.+.||+.+++|.+. .|++.+.|.+.+++++. ++ +=+..|+.-| + -.++...+.++- T Consensus 10 s~~rka~~~L~~~~i~~~~~d~~k-~~~s~~eL~~~l~~~~~~~~~li~~~~~~~k~l~~~~~~~ls~~e~~~ll~~~P- 87 (105) T cd02977 10 STSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHP- 87 (105) T ss_pred HHHHHHHHHHHHCCCCCEEEHHHH-CCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHCH- T ss_conf 789999999985799738860432-269999999999975998999986332459884983401399999999999696- Q ss_pred HHCCCCCEEEC Q ss_conf 64289829971 Q gi|254780673|r 419 DYLDAPILTIT 429 (467) Q Consensus 419 ~~L~~p~~ri~ 429 (467) ..|..|+...+ T Consensus 88 ~LlkRPIi~~~ 98 (105) T cd02977 88 KLIKRPIVVDG 98 (105) T ss_pred HHHCCCEEEEC T ss_conf 78339769869 No 351 >PRK06234 methionine gamma-lyase; Provisional Probab=33.46 E-value=31 Score=14.21 Aligned_cols=46 Identities=17% Similarity=0.424 Sum_probs=26.3 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCC Q ss_conf 1223554431136506999324344588665323647540811-101166 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTP 193 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~p 193 (467) |+..++...++....+ +...++ |||.+..-..++.+||-+ +++|.- T Consensus 91 Ai~~~l~~~l~~Gdhi-v~~~~~--YGgT~~l~~~~l~~~Gi~~~~vd~~ 137 (399) T PRK06234 91 AISSSLWSALKAGDHV-VASDTL--YGCTFALLNHGLTRYGVEVTFVDTS 137 (399) T ss_pred HHHHHHHHHCCCCCEE-EECCCC--CHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9999999971899989-975887--2048999998865168578862688 No 352 >TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117 The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases.. Probab=33.02 E-value=12 Score=17.03 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=30.1 Q ss_pred HHHHHH-HHHCCCEEEEECCCCCCC-HHHHHHHHHHHHHHHH Q ss_conf 999999-987198999957887676-7899999999967764 Q gi|254780673|r 381 QTIFES-VKKTGRLVTVEEGYPQSS-VGSTIANQVQRKVFDY 420 (467) Q Consensus 381 ~~i~~s-v~kt~~~i~vee~~~~gg-~g~~i~~~i~e~~f~~ 420 (467) .-+..+ -+|+.|+++|||+|.... .|..+++...|.+|.. T Consensus 724 ~~my~~g~R~~rK~~~iDEAW~Ll~~g~~~~~~~FIE~gyRr 765 (900) T TIGR02746 724 GEMYLTGDRKRRKILIIDEAWSLLDDGANPQAANFIETGYRR 765 (900) T ss_pred HHHHHCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHC T ss_conf 776305889755167644248987427851358988876320 No 353 >PRK05793 amidophosphoribosyltransferase; Provisional Probab=32.71 E-value=32 Score=14.13 Aligned_cols=52 Identities=10% Similarity=0.234 Sum_probs=37.7 Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC Q ss_conf 99998719899995788767678999999999677642898299717778--88889 Q gi|254780673|r 384 FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA 438 (467) Q Consensus 384 ~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~ 438 (467) ++++-+-+|+|+||++...|--...|...+-+-+- +.-..|+++|.+ |+.|+ T Consensus 350 ~~~~v~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGa---keVh~ri~sPpi~~pc~yG 403 (472) T PRK05793 350 LKVNVEGKRVVLIDDSIVRGTTSKRLVESLRRAGA---KEVHFRVSSPPVKYPCYFG 403 (472) T ss_pred EEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC T ss_conf 02100698699980770557679999999997799---9899996899968876665 No 354 >PRK10126 tyrosine phosphatase; Provisional Probab=32.25 E-value=19 Score=15.68 Aligned_cols=92 Identities=11% Similarity=0.096 Sum_probs=50.9 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC---- Q ss_conf 8887531004675279733006857999999999871989999578876767899999999967764289829971---- Q gi|254780673|r 354 TKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTIT---- 429 (467) Q Consensus 354 ~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~---- 429 (467) -.|...|.+.||+.+-- .-.+++.+. +...-.+++.++.. ...|.+. +......+..++ T Consensus 47 ~~a~~~~~~~gid~~~h---~arqi~~~~----~~~~DlIl~Md~~~---------~~~l~~~-~P~~~~kv~ll~~~~~ 109 (147) T PRK10126 47 PTAISVAAEHQLSLEGH---CARQISRRL----CRNYDLILTMEKRH---------IERLCEM-APEMRGKVMLFGHWDN 109 (147) T ss_pred HHHHHHHHHCCCCCCCC---EEEECCHHH----HHHCCEEEECCHHH---------HHHHHHH-CCCHHHEEEEHHHCCC T ss_conf 99999999829996678---441088878----63689999889899---------9999986-8312411764421078 Q ss_pred CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf 7778888896676560899899999999985020 Q gi|254780673|r 430 GRDVPMPYAANLEKLALPNVDEIIESVESICYKR 463 (467) Q Consensus 430 ~~d~p~P~~~~le~~~~p~~~~I~~av~~v~~~~ 463 (467) ..|+|-||....+. |--..+.|-.+++....|= T Consensus 110 ~~dVpDPy~~~~~~-Fe~~~~~Ie~~~~~~~~~L 142 (147) T PRK10126 110 ECEIPDPYRKSRET-FAAVYTLLERSARQWAQAL 142 (147) T ss_pred CCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHH T ss_conf 98599999899899-9999999999999999999 No 355 >PRK06388 amidophosphoribosyltransferase; Provisional Probab=32.17 E-value=32 Score=14.07 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=36.6 Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC Q ss_conf 998719899995788767678999999999677642898299717778--88889 Q gi|254780673|r 386 SVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA 438 (467) Q Consensus 386 sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~ 438 (467) ++-+-+++|+|||+...|--...|...+-+.+- +.--.|+++|.+ |+.|+ T Consensus 352 ~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGA---keVh~ri~sPpi~~pC~yG 403 (474) T PRK06388 352 EVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGA---KEVHVRIGSPHIIAPCYFG 403 (474) T ss_pred EEECCCEEEEECCCCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC T ss_conf 441798899981661656679999999997799---8899997899967886662 No 356 >CHL00037 petA cytochrome f Probab=31.92 E-value=26 Score=14.76 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=9.9 Q ss_pred CCCCCCHHHHHHHHHHHH Q ss_conf 887676789999999996 Q gi|254780673|r 399 GYPQSSVGSTIANQVQRK 416 (467) Q Consensus 399 ~~~~gg~g~~i~~~i~e~ 416 (467) +.-.||||-.=.+.+-++ T Consensus 265 nPNVGGFGQ~e~EIVLQ~ 282 (320) T CHL00037 265 NPNVGGFGQGDAEIVLQD 282 (320) T ss_pred CCCCCCCCCCCEEEEECC T ss_conf 998676676614899418 No 357 >PRK08114 cystathionine beta-lyase; Provisional Probab=31.91 E-value=32 Score=14.04 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=28.2 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCC Q ss_conf 1223554431136506999324344588665323647540811-101166 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTP 193 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~p 193 (467) |+.-++...++....++ ...++ |||.+..-+.++.+||=+ +++|.- T Consensus 89 Ais~~ll~ll~~Gd~il-~~~~~--YggT~~l~~~~l~~~Gi~v~~~d~~ 135 (395) T PRK08114 89 AVANSILAFVEQGDHVL-MTGTA--YEPSQDFCSKILSKLGVTTTWFDPL 135 (395) T ss_pred HHHHHHHHHHCCCCEEE-ECCCC--CHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 99999999708999899-76888--5689999999998759569985799 No 358 >PRK12326 preprotein translocase subunit SecA; Reviewed Probab=31.47 E-value=33 Score=14.00 Aligned_cols=61 Identities=15% Similarity=0.274 Sum_probs=45.8 Q ss_pred EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEC Q ss_conf 44316874586025788888888753100467527973300685799999999987198999957 Q gi|254780673|r 334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEE 398 (467) Q Consensus 334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee 398 (467) +...|.-|.|-+ ..+..+...++.|.++||.+.|.|.+. .-.+..|+.-..+-|++-+... T Consensus 434 ~h~~GqPVLVGT--~SVe~SE~ls~~L~~~gi~h~VLNAk~--~~~EA~IIA~AG~~GaVTIATN 494 (775) T PRK12326 434 VHETGQPVLVGT--RDVAESEELAERLVRRGVPAVVLNAKN--DAEEAAVIAEAGKYGAVTVSTQ 494 (775) T ss_pred HHHCCCCEEEEE--CCHHHHHHHHHHHHHCCCCCEECCCCC--HHHHHHHHHHCCCCCCEEEECC T ss_conf 997599889970--718989999999987699830236897--2769999994599998798233 No 359 >PRK09124 pyruvate dehydrogenase; Provisional Probab=31.33 E-value=33 Score=13.98 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=11.1 Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC Q ss_conf 6999324344588665323647540811101166 Q gi|254780673|r 160 VFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP 193 (467) Q Consensus 160 ~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p 193 (467) +++.|..+. ++..--..|.+++|- .|+.|+ T Consensus 205 vi~~G~G~~---~a~~~l~~lAe~lg~-PV~tt~ 234 (574) T PRK09124 205 TLLCGSGCA---GAHDELVALADTLKA-PIVHAL 234 (574) T ss_pred EEEECCCHH---HHHHHHHHHHHHHCC-CEEEEC T ss_conf 899791032---379999999998599-889605 No 360 >CHL00122 secA preprotein translocase subunit SecA; Validated Probab=31.08 E-value=33 Score=13.95 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=46.1 Q ss_pred EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEC Q ss_conf 44316874586025788888888753100467527973300685799999999987198999957 Q gi|254780673|r 334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEE 398 (467) Q Consensus 334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee 398 (467) ++..|.-|.|-+ ..+..+...+..|.+.||.++|.|.+.=..-.+..|+.-..+.|.+-+... T Consensus 420 ~h~~GqPVLvGT--~SVe~SE~ls~~L~~~gi~h~vLNAk~~n~~~EA~IiA~AG~~gaVTIATN 482 (891) T CHL00122 420 MHKIGRPILVGT--TSVEKSELLSQLLEEYQLPHNLLNAKPENVKRESEIIAQAGRKGAITIATN 482 (891) T ss_pred HHHCCCCEEEEC--CCHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCEEEECC T ss_conf 996799989834--655889999999997478622023884307899999995699993897155 No 361 >PRK13344 spxA transcriptional regulator Spx; Reviewed Probab=31.02 E-value=34 Score=13.94 Aligned_cols=101 Identities=22% Similarity=0.286 Sum_probs=65.7 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCC----CEEEE-EC-------CCCCCCHHHHHHHHHHHHHH Q ss_conf 88888875310046752797330068579999999998719----89999-57-------88767678999999999677 Q gi|254780673|r 351 TYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTG----RLVTV-EE-------GYPQSSVGSTIANQVQRKVF 418 (467) Q Consensus 351 ~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~----~~i~v-ee-------~~~~gg~g~~i~~~i~e~~f 418 (467) ..|.+|..-|.++||+.+.+|++ -.|+..+.|...++++. .++.- .. ....-+. ++..+.+.++. T Consensus 11 ~TcrKA~kWL~~~~I~y~~~di~-k~p~s~~el~~~L~~~~~g~~~lintrs~~~r~L~~~~~~ls~-~E~i~ll~~~p- 87 (132) T PRK13344 11 TSCKKAKTWLNAHQLAYKEQNLG-KEPLTKEEILAILSKTENGVESIVSSKNRYAKALDCDIEELSV-SEVIDLIQENP- 87 (132) T ss_pred HHHHHHHHHHHHCCCCEEEEEEE-CCCCCHHHHHHHHHHCCCCHHHHEECCCCHHHHCCCCHHHCCH-HHHHHHHHHCC- T ss_conf 67899999999879963885412-2796999999999981558999137888216642756443999-99999999590- Q ss_pred HHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHH Q ss_conf 6428982997177788888966765608998999999 Q gi|254780673|r 419 DYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIES 455 (467) Q Consensus 419 ~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~a 455 (467) ..|+.|+.. ...-.-+.|...--+.++|...+-.+- T Consensus 88 ~LiKRPil~-~~~~~~vGF~ede~r~Flpr~~r~~e~ 123 (132) T PRK13344 88 RILKSPILI-DDKRLQVGYKEDDIRAFLPRSIRNVEN 123 (132) T ss_pred CCEECCEEE-ECCEEEECCCHHHHHHHCCHHHHHHHH T ss_conf 103274795-199889625999999876988899999 No 362 >PRK08525 amidophosphoribosyltransferase; Provisional Probab=30.93 E-value=34 Score=13.94 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=38.2 Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC Q ss_conf 99998719899995788767678999999999677642898299717778--88889 Q gi|254780673|r 384 FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA 438 (467) Q Consensus 384 ~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~ 438 (467) ++++-+-+++|+|||+...|--...|...|-+-+- +.--.|+++|.+ |+.|+ T Consensus 334 ~~~~i~gK~vvlvDDSIVRGtT~k~ii~~Lr~aGa---keVh~~i~sPpi~~pC~yG 387 (445) T PRK08525 334 MRKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGA---SEIHMAIACPEIKFPCTYG 387 (445) T ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC T ss_conf 34521798699981761557789999999997799---8899996899968886676 No 363 >PRK05968 hypothetical protein; Provisional Probab=30.84 E-value=34 Score=13.93 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=28.8 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC-CCEECCC Q ss_conf 122355443113650699932434458866532364754081-1101166 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGC-ERVIDTP 193 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~-~R~~d~p 193 (467) |+..++...++....++ ...++ |||.+..-+.++.+||= -+++|.- T Consensus 90 Ais~~l~~ll~~Gd~iv-~~~~~--YggT~~l~~~~l~~~GI~v~~vd~~ 136 (389) T PRK05968 90 AISSTVLSFVEPGDRIV-AVRHV--YPDAYRLFGTLLKRMGVEVDYVDGR 136 (389) T ss_pred HHHHHHHHHHCCCCEEE-ECCCC--CCCHHHHHHHHHHCCCCEEEEECCC T ss_conf 99999999608999898-58876--6758999998886078469996899 No 364 >pfam03960 ArsC ArsC family. This family is related to glutaredoxins pfam00462. Probab=30.52 E-value=34 Score=13.89 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=53.7 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EE-EEECCCC-------CCCHHHHHHHHHHHHHHH Q ss_conf 88888753100467527973300685799999999987198----99-9957887-------676789999999996776 Q gi|254780673|r 352 YATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LV-TVEEGYP-------QSSVGSTIANQVQRKVFD 419 (467) Q Consensus 352 ~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i-~vee~~~-------~gg~g~~i~~~i~e~~f~ 419 (467) .|.+|.+.|.+.||..+++|.+. .|++.+.|...+++++. ++ +=+..|+ .-+ -+++.+.+.++- . T Consensus 8 t~rka~~~L~~~~i~~~~~d~~~-~p~s~~el~~~l~~~~~~~~~li~~~~~~~k~l~~~~~~ls-~~e~~~ll~~~P-~ 84 (111) T pfam03960 8 TCRKALAWLEEHGIEYQEIDYLE-TPPSKEELKDILSKTGDGWEELLNTRGTTYRELNLDVEELS-EDELIELMLENP-S 84 (111) T ss_pred HHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCCCCCCCC-HHHHHHHHHHCC-H T ss_conf 99999999998799808973246-79999999999998399899998852777888399733279-999999998483-1 Q ss_pred HCCCCCEEECCCCCCCCCCHHHHHHCC Q ss_conf 428982997177788888966765608 Q gi|254780673|r 420 YLDAPILTITGRDVPMPYAANLEKLAL 446 (467) Q Consensus 420 ~L~~p~~ri~~~d~p~P~~~~le~~~~ 446 (467) .|+.|+...+ ...-+-+.+.--+.++ T Consensus 85 LikRPIi~~~-~~~~iG~~~e~i~~~l 110 (111) T pfam03960 85 LIRRPIVVDG-KRLLVGFNEEEIRAFL 110 (111) T ss_pred HEECCEEEEC-CEEEECCCHHHHHHHC T ss_conf 3222579739-9889769999999758 No 365 >PRK06781 amidophosphoribosyltransferase; Provisional Probab=30.51 E-value=34 Score=13.89 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=36.4 Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC Q ss_conf 99998719899995788767678999999999677642898299717778--88889 Q gi|254780673|r 384 FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA 438 (467) Q Consensus 384 ~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~ 438 (467) ++++-|-+++|+|||+...|--...|...+-+-+- +.--.|+++|.+ |+.|+ T Consensus 342 ~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGA---keVh~ri~sPpi~~Pc~yG 395 (471) T PRK06781 342 VRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGA---TEVHVRIASPPLKYPCFYG 395 (471) T ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC T ss_conf 10004898899981660557569999999997799---8899996899857876665 No 366 >TIGR02870 spore_II_D stage II sporulation protein D; InterPro: IPR014225 This entry contains the stage II sporulation protein D (SpoIID), which is a protein involved in the endospore formation program. SpoIID is one of the three genes (spoIID, spoIIM and spoIIP, , , ), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan - mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the engulfment stage. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers . Probab=30.46 E-value=31 Score=14.14 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=28.3 Q ss_pred EEECCCCCE--EEEHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 443168745--86025788888888753100467527 Q gi|254780673|r 334 IHRQGSDVT--IISFGIGMTYATKAAIELEKNGIDAE 368 (467) Q Consensus 334 i~~~G~dit--ii~~G~~~~~a~~aa~~L~~~gi~~~ 368 (467) +.+.+++|. -++|||.|..+.-=|.-|+++|=..+ T Consensus 307 ~~~~~d~I~i~t~GyGHGVGMSQYGAn~MA~~Gk~Y~ 343 (358) T TIGR02870 307 WKVQGDKIVITTIGYGHGVGMSQYGANAMAKEGKTYD 343 (358) T ss_pred EEEECCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEE T ss_conf 9986787999987154555523788999986179742 No 367 >COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] Probab=30.29 E-value=34 Score=13.86 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=17.5 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC Q ss_conf 01223554431136506999324344588665 Q gi|254780673|r 144 EALRDAIAEEMRRDKDVFIMGEEVAEYQGAYK 175 (467) Q Consensus 144 ea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~ 175 (467) +-++++-.-.-.--..+++.||||+.||+.++ T Consensus 177 ~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~ 208 (437) T COG0621 177 DILKEVKRLVAQGVKEIVLTGQDVNAYGKDLG 208 (437) T ss_pred HHHHHHHHHHHCCCEEEEEEEEEHHHCCCCCC T ss_conf 99999999998897499999881101044677 No 368 >cd00115 LMWPc Substituted updates: Aug 22, 2001 Probab=30.14 E-value=35 Score=13.85 Aligned_cols=102 Identities=22% Similarity=0.234 Sum_probs=52.7 Q ss_pred CCEEEEHHHHHH-----HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH Q ss_conf 745860257888-----888887531004675279733006857999999999871989999578876767899999999 Q gi|254780673|r 340 DVTIISFGIGMT-----YATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQ 414 (467) Q Consensus 340 ditii~~G~~~~-----~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~ 414 (467) ++.+-|.|.... .--.+.+.|++.||+.+= +.-++|+.+. +...-.++++++.. ...|. T Consensus 29 ~i~v~SAG~~~~~~G~~~~~~a~~~l~~~Gid~~~---h~sr~i~~~~----~~~~DlIl~M~~~~---------~~~l~ 92 (141) T cd00115 29 DIEVDSAGTSGWHVGGRPDPRAIAVLAEHGIDISG---HRARQLTEDD----FDEFDLIITMDESN---------LAELL 92 (141) T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC---CCEEECCCCC----CCCCCEEEECCHHH---------HHHHH T ss_conf 86999610256677999898899999994998434---5101243025----66589999898689---------99998 Q ss_pred HHHHHHCCCCCEEEC----CCCCCCCCCHHHHHHCCCCHHHHHHHHHHH Q ss_conf 967764289829971----777888889667656089989999999998 Q gi|254780673|r 415 RKVFDYLDAPILTIT----GRDVPMPYAANLEKLALPNVDEIIESVESI 459 (467) Q Consensus 415 e~~f~~L~~p~~ri~----~~d~p~P~~~~le~~~~p~~~~I~~av~~v 459 (467) ..|......+..++ ..|+|-||...++. |--..+.|-++++.+ T Consensus 93 -~~~p~~~~kv~~l~~~~~~~~I~DPy~~~~~~-f~~~~~~I~~~v~~l 139 (141) T cd00115 93 -EPPPGGRAKVELLGEYAGDREVPDPYYGSLEA-FEEVYDLIEEAIKAL 139 (141) T ss_pred -HCCCCCCCEEEECHHHCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHH T ss_conf -60877533598613335787278988998799-999999999999997 No 369 >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i Probab=30.06 E-value=35 Score=13.84 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=39.2 Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCE-----EEEECCCCCCCHHHHHHH Q ss_conf 88888887531004675279733006857999999999871989-----999578876767899999 Q gi|254780673|r 350 MTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRL-----VTVEEGYPQSSVGSTIAN 411 (467) Q Consensus 350 ~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~-----i~vee~~~~gg~g~~i~~ 411 (467) =..|.+|.+.|.+.||..+.+|+.. |.+...+..++++.. |+++ +...||+-. +.+ T Consensus 10 C~~C~~aK~lL~~~~i~y~ei~v~~----~~~~~~~~~~~~~~~~TvPqIfi~-g~~IGG~~~-l~~ 70 (75) T cd03418 10 CPYCVRAKALLDKKGVDYEEIDVDG----DPALREEMINRSGGRRTVPQIFIG-DVHIGGCDD-LYA 70 (75) T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC----CHHHHHHHHHHCCCCCEECEEEEC-CEEEECHHH-HHH T ss_conf 9779999999998199868986279----999999999980899353979999-979837899-999 No 370 >TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase; InterPro: IPR011812 This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain, which describes transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are proteobacteria that produce murein (peptidoglycan).; GO: 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=30.01 E-value=35 Score=13.83 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=6.4 Q ss_pred HCCCEEEEEEC Q ss_conf 20313866522 Q gi|254780673|r 276 VPGLKVVIPYT 286 (467) Q Consensus 276 iPgl~V~~P~~ 286 (467) -|||+...=+. T Consensus 64 S~nlk~AvIAs 74 (228) T TIGR02070 64 SPNLKRAVIAS 74 (228) T ss_pred CHHHCEEEEEC T ss_conf 81120104111 No 371 >PRK09123 amidophosphoribosyltransferase; Provisional Probab=29.90 E-value=35 Score=13.82 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=37.2 Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC Q ss_conf 99998719899995788767678999999999677642898299717778--88889 Q gi|254780673|r 384 FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA 438 (467) Q Consensus 384 ~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~ 438 (467) ++++-|-+++|+||++...|--...|...+-+.+- +.-..|+++|.+ |+.|+ T Consensus 345 ~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGA---keVh~ri~sPpi~~pc~yG 398 (480) T PRK09123 345 NRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGA---KEVHLRIASPPTTHPCFYG 398 (480) T ss_pred CCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC T ss_conf 33345898299980661536769999999997799---8899996899857876674 No 372 >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed Probab=29.74 E-value=35 Score=13.80 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=33.8 Q ss_pred CCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHHH Q ss_conf 168745860257888888887531004675279733006857--999999999 Q gi|254780673|r 337 QGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPM--DWQTIFESV 387 (467) Q Consensus 337 ~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pl--d~~~i~~sv 387 (467) .|+.+.+|+=|+.-..|...|..|-. -++.++..|+...+ ..+.+..+. T Consensus 450 ~GK~VVVIGGGntAmDcaRTA~RlGA--~~VtivYRR~~~eMPA~~~Ev~~A~ 500 (639) T PRK12809 450 EGKRVVVLGGGDTTMDCLRTSIRLNA--ASVTCAYRRDEVSMPGSRKEVVNAR 500 (639) T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC--CEEEECCCCCCCCCCCCCEECCCHH T ss_conf 67779998998218999999998399--8775215477457999700301012 No 373 >PRK02812 ribose-phosphate pyrophosphokinase; Provisional Probab=29.58 E-value=35 Score=13.78 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=19.3 Q ss_pred EEECCCC-CCCCCCHHHHHHCCCCHHHHH-HHHHHHHCCCCC Q ss_conf 9971777-888889667656089989999-999998502002 Q gi|254780673|r 426 LTITGRD-VPMPYAANLEKLALPNVDEII-ESVESICYKRKA 465 (467) Q Consensus 426 ~ri~~~d-~p~P~~~~le~~~~p~~~~I~-~av~~v~~~~~~ 465 (467) .++-.-| +|.|.....+|....+...++ ++++++.+..-. T Consensus 285 ~~vvvTdTip~~~~~~~~ki~vlsvA~llAeaI~ri~~~~Sv 326 (331) T PRK02812 285 EEVIVTNTIPVPEERRFPQLKVLSVANMLGEAIWRIHEESSV 326 (331) T ss_pred CEEEEECCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHCCCCH T ss_conf 779980894485000699819987389999999998779976 No 374 >PRK12422 chromosomal replication initiation protein; Provisional Probab=29.55 E-value=35 Score=13.78 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=57.5 Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCC Q ss_conf 7767888799830244576444433-216887632203138665221000105556541378347640212333334533 Q gi|254780673|r 242 GGQITTSIVFRGPNGAAARVAAQHS-QCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFEVP 320 (467) Q Consensus 242 gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~~p 320 (467) +|....|+.+-| +.|.|-||- |.+. ....-|+++|++-+. .+.-.=+..+++.++.--| |-.|. +.++- T Consensus 137 ~g~~yNPLfIyG----~~GlGKTHLL~AIg-n~i~~~~~kV~Yvta-e~F~~~~v~ai~~~~~~~F---r~~yr-~~DvL 206 (455) T PRK12422 137 KGFPFNPIYLFG----PEGSGKTHLMQAAV-SALRESGGKILYVSS-ELFTEHLVSAIRSGEMQRF---RSFYR-NVDAL 206 (455) T ss_pred CCCCCCCEEEEC----CCCCCHHHHHHHHH-HHHHCCCCEEEEECH-HHHHHHHHHHHHCCCHHHH---HHHHH-CCCEE T ss_conf 887678758878----99997899999999-985379986999749-9999999999975889999---99996-38877 Q ss_pred CCCCEECCCCCEE-----------EEECCCCCEEEEHHHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHH Q ss_conf 4663121443114-----------44316874586025788888888753100---467527973300685799999999 Q gi|254780673|r 321 MVDDLVIPIGRAR-----------IHRQGSDVTIISFGIGMTYATKAAIELEK---NGIDAELIDLRTIRPMDWQTIFES 386 (467) Q Consensus 321 ~~~~~~~p~Gk~~-----------i~~~G~ditii~~G~~~~~a~~aa~~L~~---~gi~~~vid~r~l~Pld~~~i~~s 386 (467) -.||.-+=-||.. ....|+.|-|-+-- .-.+....-+.|.. -|+.++ |.|-|.++..+. T Consensus 207 LIDDIQfl~gK~~tqeEff~tfN~L~~~~KQIVitsDr-~P~el~~l~~RL~SRf~~GL~v~------I~~Pd~etr~~I 279 (455) T PRK12422 207 FIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSSY-APGDLKAMEERLISRFEWGIAIP------IHPLTREGLRSF 279 (455) T ss_pred EEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCC-CHHHHHHHHHHHHHHHHCCEEEC------CCCCCHHHHHHH T ss_conf 63147887284889999999999999859969996898-95765126899998863761321------689998999999 Q ss_pred HH Q ss_conf 98 Q gi|254780673|r 387 VK 388 (467) Q Consensus 387 v~ 388 (467) ++ T Consensus 280 l~ 281 (455) T PRK12422 280 LM 281 (455) T ss_pred HH T ss_conf 99 No 375 >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Probab=29.46 E-value=36 Score=13.77 Aligned_cols=57 Identities=21% Similarity=0.378 Sum_probs=29.7 Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH-----CCCCEEEECCCCCCCCCCCC Q ss_conf 7888799830244576444433216887632203138665221000105556541-----37834764021233333453 Q gi|254780673|r 245 ITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR-----DPNPVIFLENEILYGSSFEV 319 (467) Q Consensus 245 ~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~-----~~~Pvi~le~~~ly~~~~~~ 319 (467) +.-||+++...|++++ ||+++. ++.|++..+..+-+ ..++-+|+|.-+.-.+..++ T Consensus 151 iGyPv~iKA~~GGGGr-----------------Gmrvv~--~~~el~~~~~~~~~Ea~~aFg~~~v~iEk~i~~~RHIEV 211 (449) T PRK08591 151 IGYPVIIKATAGGGGR-----------------GMRVVR--TEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEI 211 (449) T ss_pred CCCCEEEEECCCCCCC-----------------EEEEEC--CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEE T ss_conf 4996698852689877-----------------699985--678999999999999997379985678771256536789 Q ss_pred C Q ss_conf 3 Q gi|254780673|r 320 P 320 (467) Q Consensus 320 p 320 (467) . T Consensus 212 Q 212 (449) T PRK08591 212 Q 212 (449) T ss_pred E T ss_conf 9 No 376 >PRK12346 transaldolase A; Provisional Probab=29.44 E-value=31 Score=14.23 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHCCCCCEEEE Q ss_conf 8888888875310046752797 Q gi|254780673|r 349 GMTYATKAAIELEKNGIDAELI 370 (467) Q Consensus 349 ~~~~a~~aa~~L~~~gi~~~vi 370 (467) .+.+.++|++.|+++||.|.+- T Consensus 134 ~TweGi~Aa~~Le~eGI~cnlT 155 (316) T PRK12346 134 STWEGIRAAEELEKEGINCNLT 155 (316) T ss_pred CCHHHHHHHHHHHHCCCCEEEE T ss_conf 8678999999999759714356 No 377 >pfam00354 Pentaxin Pentaxin family. Pentaxins are also known as pentraxins. Probab=29.28 E-value=36 Score=13.75 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=37.1 Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHH Q ss_conf 50699932434458866532364754081110116666278998999 Q gi|254780673|r 158 KDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGI 204 (467) Q Consensus 158 ~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~ 204 (467) ...+++|||=..+||.|..++.|.-+.-.-++.|--++..-|-.++. T Consensus 121 ~G~liLGQeQd~~gG~Fd~~qsf~G~is~v~~Wd~vL~~~eI~~~~~ 167 (193) T pfam00354 121 PPSIILGQEQDSYGGGFDASQSFVGEIGDLNMWDYVLTPEQIKTVYK 167 (193) T ss_pred CCEEEEEECCCCCCCCCCCCCCEEEEECCEEEECCCCCHHHHHHHHC T ss_conf 98899977124567875756744598434478854599999999982 No 378 >pfam04430 DUF498 Protein of unknown function (DUF498/DUF598). This is a large family of uncharacterized proteins found in all domains of life. The structure shows a novel fold with three beta sheets. A dimeric form is found in the crystal structure. It was suggested that the cleft in between the two monomers might bing nucleic acid. Probab=29.13 E-value=28 Score=14.54 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=26.2 Q ss_pred CCCCCEEEEHHH-HHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 168745860257-8888888875310046752797330 Q gi|254780673|r 337 QGSDVTIISFGI-GMTYATKAAIELEKNGIDAELIDLR 373 (467) Q Consensus 337 ~G~ditii~~G~-~~~~a~~aa~~L~~~gi~~~vid~r 373 (467) ..-|+.|+++|. ......+..+.|.+.||.+|+-|-+ T Consensus 52 ~~peiliiGtG~~~~~l~~~~~~~l~~~gI~vE~m~T~ 89 (110) T pfam04430 52 PKPEVLIIGTGARLRFLPPELREALRKLGIGVEVMDTG 89 (110) T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECHH T ss_conf 99878999559866789999999999759907997759 No 379 >PRK05269 transaldolase B; Provisional Probab=28.95 E-value=32 Score=14.11 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHCCCCCEEEE Q ss_conf 8888888875310046752797 Q gi|254780673|r 349 GMTYATKAAIELEKNGIDAELI 370 (467) Q Consensus 349 ~~~~a~~aa~~L~~~gi~~~vi 370 (467) ++.+.++|++.|+++||.|-+- T Consensus 135 ~TweGi~Aa~~Le~~gI~~nlT 156 (320) T PRK05269 135 STWEGIRAAEQLEKEGINCNLT 156 (320) T ss_pred CCHHHHHHHHHHHHCCCCEEEE T ss_conf 8788999999999759624577 No 380 >PRK08527 acetolactate synthase 3 catalytic subunit; Validated Probab=28.94 E-value=36 Score=13.71 Aligned_cols=15 Identities=7% Similarity=0.080 Sum_probs=8.6 Q ss_pred CHHHHHHHHHHHHCC Q ss_conf 989999999998502 Q gi|254780673|r 448 NVDEIIESVESICYK 462 (467) Q Consensus 448 ~~~~I~~av~~v~~~ 462 (467) +.+++-+++++.+.. T Consensus 514 ~~~el~~Al~~a~~~ 528 (560) T PRK08527 514 TKEEFDKALKQALKS 528 (560) T ss_pred CHHHHHHHHHHHHHC T ss_conf 999999999999818 No 381 >COG2258 Uncharacterized protein conserved in bacteria [Function unknown] Probab=28.87 E-value=34 Score=13.87 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=3.9 Q ss_pred ECCCCCEEEE Q ss_conf 3168745860 Q gi|254780673|r 336 RQGSDVTIIS 345 (467) Q Consensus 336 ~~G~ditii~ 345 (467) +.|+.+.++. T Consensus 152 ~~gD~l~l~~ 161 (210) T COG2258 152 RAGDPLKLIP 161 (210) T ss_pred CCCCCEEEEC T ss_conf 5999558715 No 382 >PRK10046 dpiA two-component response regulator DpiA; Provisional Probab=28.81 E-value=36 Score=13.69 Aligned_cols=103 Identities=17% Similarity=0.360 Sum_probs=54.2 Q ss_pred HHHHHHHHHHHCCCEEE-EEECCHHCCCHHHHHHHCCCC-EEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECC--CCC Q ss_conf 32168876322031386-652210001055565413783-47640212333334533466312144311444316--874 Q gi|254780673|r 266 SQCYAAWYSHVPGLKVV-IPYTASDAKGLLKAAIRDPNP-VIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQG--SDV 341 (467) Q Consensus 266 s~~~~~~~~~iPgl~V~-~P~~~~d~~~ll~~ai~~~~P-vi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G--~di 341 (467) .+.+..++.++||..++ ..+|..++..++. ...| ++++. ...|+.+-..+ + .++.+.+ .++ T Consensus 17 ~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~----~~~pDLvLLD--------i~LPd~~Glel-l--~~lr~~~~~~~V 81 (225) T PRK10046 17 AEMHAEYIRHIPGFSQILLAGNLAQARMMIE----RFKPGLILLD--------NYLPDGRGINL-L--HELVQAHYPGDV 81 (225) T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHH----HCCCCEEEEE--------CCCCCCCHHHH-H--HHHHHHCCCCCE T ss_conf 9999999972899549999899999999997----3599999982--------89899979999-9--999964879988 Q ss_pred EEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC Q ss_conf 586025788888888753100467527973300685799999999987198 Q gi|254780673|r 342 TIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR 392 (467) Q Consensus 342 tii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~ 392 (467) -+|+--.-+..+.+|-+. |. +| .-+|||+.+-+.+++.+..+ T Consensus 82 I~iTA~~d~~~~~~Al~~----Ga----~D-YLvKPf~~erl~~~L~~y~~ 123 (225) T PRK10046 82 VFTTAASDMETVSEAVRC----GV----FD-YLIKPIAYERLGQTLTRFRQ 123 (225) T ss_pred EEEECCCCHHHHHHHHHC----CC----CC-CEECCCCHHHHHHHHHHHHH T ss_conf 999689999999999974----99----83-10289999999999999999 No 383 >cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers. Probab=28.68 E-value=37 Score=13.68 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=37.9 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHH Q ss_conf 650699932434458866532364754081110116666278998999 Q gi|254780673|r 157 DKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGI 204 (467) Q Consensus 157 d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~ 204 (467) ....+++|||=..+||.|..++.|.-+.-.-++.|--++...|-.++. T Consensus 128 ~~G~~vLGQ~Qd~~gG~Fd~~~sF~G~is~~n~W~~vLs~~eI~~~~~ 175 (201) T cd00152 128 PGGSIILGQEQDSYGGGFDATQSFVGEISDVNMWDSVLSPEEIKNVYS 175 (201) T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHH T ss_conf 997699974456777763765431128732899931499999999985 No 384 >cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and Probab=28.67 E-value=37 Score=13.68 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=17.9 Q ss_pred HHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 888888875310046752797330 Q gi|254780673|r 350 MTYATKAAIELEKNGIDAELIDLR 373 (467) Q Consensus 350 ~~~a~~aa~~L~~~gi~~~vid~r 373 (467) .....+.-+.|++.|||++.||.. T Consensus 13 ~~lq~~vF~~lA~~~ISvDfINI~ 36 (67) T cd04914 13 NDLQQRVFKALANAGISVDLINVS 36 (67) T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 359999999999759857899866 No 385 >PRK10638 glutaredoxin 3; Provisional Probab=28.48 E-value=37 Score=13.65 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=43.8 Q ss_pred CCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EEEEECCCCCCCHHHHHHHHH Q ss_conf 874586025788888888753100467527973300685799999999987198----999957887676789999999 Q gi|254780673|r 339 SDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LVTVEEGYPQSSVGSTIANQV 413 (467) Q Consensus 339 ~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i~vee~~~~gg~g~~i~~~i 413 (467) ++|+|.+..+- ..|.+|...|...||..+.||+.. |.+......++||+ -|.++..+ .||+-. +.+.- T Consensus 2 ~~V~Iysk~~C-pyC~~Ak~lL~~~gi~y~ei~v~~----~~~~~~~l~~~tg~~TVPqIfI~g~~-IGG~~d-l~~L~ 73 (83) T PRK10638 2 ANIEIYTKATC-PFCHRAKALLNSKGVSFQEIPIDG----DAAKREEMIKRSGRTTVPQIFIDAQH-IGGCDD-LYALD 73 (83) T ss_pred CCEEEEECCCC-HHHHHHHHHHHHCCCCCEEEECCC----CHHHHHHHHHHCCCCCCCEEEECCEE-EECHHH-HHHHH T ss_conf 98899989999-679999999997599876998679----99999999973699961969999999-957899-99999 No 386 >COG2521 Predicted archaeal methyltransferase [General function prediction only] Probab=28.33 E-value=37 Score=13.64 Aligned_cols=116 Identities=18% Similarity=0.279 Sum_probs=61.9 Q ss_pred CCEEEE--ECCCCCEEEEHHHHHHHHHHHHHHHHC----CCCCEEEEECCCCCCCCHHHH-----------HHHHHHCC- Q ss_conf 311444--316874586025788888888753100----467527973300685799999-----------99998719- Q gi|254780673|r 330 GRARIH--RQGSDVTIISFGIGMTYATKAAIELEK----NGIDAELIDLRTIRPMDWQTI-----------FESVKKTG- 391 (467) Q Consensus 330 Gk~~i~--~~G~ditii~~G~~~~~a~~aa~~L~~----~gi~~~vid~r~l~Pld~~~i-----------~~sv~kt~- 391 (467) -|...+ ++|.-+.=.|.|-. +.|++|.+.=+. -..+..|+-|..|+|+-.+.. .+.|++.. T Consensus 125 ~Kv~~V~~~~G~rVLDtC~GLG-YtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D 203 (287) T COG2521 125 AKVELVKVKRGERVLDTCTGLG-YTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDD 203 (287) T ss_pred HHHHEECCCCCCEEEEECCCCC-HHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHCCCC T ss_conf 5662444366878443246713-899999875874899996087727741358898420200317861659999741886 Q ss_pred --CEEEEECCCCCCCHHHHH-HHHHHHHHHHHCC----------CCCEEECCCCCCCCCCHHHHHHCCC Q ss_conf --899995788767678999-9999996776428----------9829971777888889667656089 Q gi|254780673|r 392 --RLVTVEEGYPQSSVGSTI-ANQVQRKVFDYLD----------APILTITGRDVPMPYAANLEKLALP 447 (467) Q Consensus 392 --~~i~vee~~~~gg~g~~i-~~~i~e~~f~~L~----------~p~~ri~~~d~p~P~~~~le~~~~p 447 (467) -=.++|+-.+. +.+.++ +.....+.|..|+ .|=+|.-++|.|---+..|++...- T Consensus 204 ~sfDaIiHDPPRf-S~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~ 271 (287) T COG2521 204 ESFDAIIHDPPRF-SLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFE 271 (287) T ss_pred CCCCEEEECCCCC-CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCE T ss_conf 5301686079733-1023576899999999970769807997279874024677147899999861734 No 387 >PRK08654 pyruvate carboxylase subunit A; Validated Probab=28.25 E-value=37 Score=13.63 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=10.2 Q ss_pred EEEEHHHHHHHHHHHHHH Q ss_conf 586025788888888753 Q gi|254780673|r 342 TIISFGIGMTYATKAAIE 359 (467) Q Consensus 342 tii~~G~~~~~a~~aa~~ 359 (467) -+|+||....+|++-... T Consensus 387 Kli~~g~~R~~Ai~r~~r 404 (497) T PRK08654 387 KLIVWGRTREEAIARMKR 404 (497) T ss_pred EEEEECCCHHHHHHHHHH T ss_conf 367988999999999999 No 388 >pfam06508 ExsB ExsB. This family includes putative transcriptional regulators from Bacteria and Archaea. Probab=28.17 E-value=25 Score=14.85 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=6.7 Q ss_pred CCCEEEEECCCCCC Q ss_conf 67527973300685 Q gi|254780673|r 364 GIDAELIDLRTIRP 377 (467) Q Consensus 364 gi~~~vid~r~l~P 377 (467) |+.-.+||+.+++- T Consensus 52 ~i~h~vidl~~l~~ 65 (137) T pfam06508 52 GVEHKIVDLDFLKQ 65 (137) T ss_pred CCCCEEECCCHHHH T ss_conf 99750303302444 No 389 >PRK01655 spxA transcriptional regulator Spx; Reviewed Probab=28.16 E-value=37 Score=13.62 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=65.5 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EE-EEECCCCCCC------HHHHHHHHHHHHHHHH Q ss_conf 88888753100467527973300685799999999987198----99-9957887676------7899999999967764 Q gi|254780673|r 352 YATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LV-TVEEGYPQSS------VGSTIANQVQRKVFDY 420 (467) Q Consensus 352 ~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i-~vee~~~~gg------~g~~i~~~i~e~~f~~ 420 (467) .|.+|.+-|.+.||+.+++|... .|+..+.|..-+++++. ++ +=+..|+.-+ --.++.+.+.++. .. T Consensus 12 t~rkA~~wL~~~~i~~~~~d~~~-~plt~~el~~~l~~~~~g~~~Lintr~~~yk~L~~~~~~ls~~e~i~ll~~~P-~L 89 (131) T PRK01655 12 SCRKAKAWLEEHEIPFTERNIFS-SPLTIDEIKQILSMTEDGTDEIISTRSKVFQKLNVDVESLPLQDLIKLISDNP-GL 89 (131) T ss_pred HHHHHHHHHHHCCCCCHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHCC-CC T ss_conf 89999999997699811567876-38999999999998189999987325204555389812199999999999591-21 Q ss_pred CCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHH Q ss_conf 2898299717778888896676560899899999 Q gi|254780673|r 421 LDAPILTITGRDVPMPYAANLEKLALPNVDEIIE 454 (467) Q Consensus 421 L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~ 454 (467) |+.|+. +.....-+.|...--+.++|..-+..+ T Consensus 90 iKRPIl-~~~~~~~VGf~~e~i~~fLPr~~r~~~ 122 (131) T PRK01655 90 LRRPII-MDEKRLQVGYNEDEIRAFLPRKVRTFE 122 (131) T ss_pred EECCEE-EECCEEEECCCHHHHHHHCCHHHHHHH T ss_conf 637579-759988963899999987798999999 No 390 >PRK11391 etp phosphotyrosine-protein phosphatase; Provisional Probab=28.03 E-value=38 Score=13.60 Aligned_cols=91 Identities=12% Similarity=0.137 Sum_probs=47.9 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC---- Q ss_conf 8887531004675279733006857999999999871989999578876767899999999967764289829971---- Q gi|254780673|r 354 TKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTIT---- 429 (467) Q Consensus 354 ~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~---- 429 (467) -.+...|++.||+.+- +.-++++.+. +...-.+++.|+... ..|.+. |......+..++ T Consensus 47 ~~a~~~l~~~gid~~~---h~ar~i~~~~----~~~~DlIl~Md~~~~---------~~l~~~-~P~~~~kv~l~~~~~~ 109 (144) T PRK11391 47 ATAADVAANHGVSLEG---HAGRKLTAEM----ARNYDLILAMESEHI---------AQVTAI-APEVRGKTMLFGQWLE 109 (144) T ss_pred HHHHHHHHHCCCCCCC---CCCCCCCHHH----HHHCCEEEECCHHHH---------HHHHHH-CHHHHHHHHHHHHHCC T ss_conf 9999999981999300---0022478879----866899998899999---------999975-9144315101633368 Q ss_pred CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCC Q ss_conf 777888889667656089989999999998502 Q gi|254780673|r 430 GRDVPMPYAANLEKLALPNVDEIIESVESICYK 462 (467) Q Consensus 430 ~~d~p~P~~~~le~~~~p~~~~I~~av~~v~~~ 462 (467) ..|+|-||....+.+ --..+.|..+++..+.| T Consensus 110 ~~~VpDPy~~~~~~f-e~~~~~I~~~~~~~~~~ 141 (144) T PRK11391 110 QKEIPDPYRKSQDAF-EHVYGMLERASQEWAKR 141 (144) T ss_pred CCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHH T ss_conf 998989999898999-99999999999999998 No 391 >PRK01999 consensus Probab=27.80 E-value=38 Score=13.57 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=14.2 Q ss_pred CCCCCEE----EEHHHHHHHHHHHHHHHHCCC Q ss_conf 1687458----602578888888875310046 Q gi|254780673|r 337 QGSDVTI----ISFGIGMTYATKAAIELEKNG 364 (467) Q Consensus 337 ~G~diti----i~~G~~~~~a~~aa~~L~~~g 364 (467) +|+++-| |..|.++. +|++.|.+.| T Consensus 211 ~Gk~~IIVDDiIdTGgTl~---~aa~~L~~~G 239 (311) T PRK01999 211 KGKNVILVDDMVDTAGTIT---KAADLMMEKG 239 (311) T ss_pred CCCEEEEECCHHHHHHHHH---HHHHHHHHCC T ss_conf 7966999754444347899---9999998559 No 392 >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional Probab=27.79 E-value=38 Score=13.57 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=36.4 Q ss_pred ECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEC--------CCCCC---CCHHHHHHHHHHCCCE-EEEECCCC Q ss_conf 3168745860257888888887531004675279733--------00685---7999999999871989-99957887 Q gi|254780673|r 336 RQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDL--------RTIRP---MDWQTIFESVKKTGRL-VTVEEGYP 401 (467) Q Consensus 336 ~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~--------r~l~P---ld~~~i~~sv~kt~~~-i~vee~~~ 401 (467) +.|+.++||+-|. --|-||..|.+.|.+++|++- +.--| |+.+.|..-++.-..+ |.++-+.. T Consensus 437 ~~GkKVAVIGsGP---AGLsaA~~La~~G~~VtVFE~~~~~GG~L~yGIP~fRLPk~iv~~eI~~l~~lGV~~~~n~~ 511 (760) T PRK12778 437 KNGIKVAVIGSGP---AGLSFAGDMAKYGYDVTVFEALHEIGGVLKYGIPEFRLPNKIVDVEIENLVKMGVTFEKDCI 511 (760) T ss_pred CCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCE T ss_conf 6899899989778---99999999997799069980588889757654861108789999999999864979989957 No 393 >PRK07811 cystathionine gamma-synthase; Provisional Probab=27.76 E-value=38 Score=13.57 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=28.4 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCCCC Q ss_conf 1223554431136506999324344588665323647540811-10116666 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTPIT 195 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~pi~ 195 (467) |+..++.-.++....++ ...++ |||.+..-..++.+||=+ +++|..-- T Consensus 85 Ai~~~l~~ll~~Gd~iv-~~~~~--YggT~~l~~~~l~~~Gi~~~~vd~~d~ 133 (386) T PRK07811 85 ATDCLLRAVLRPGDHIV-IPNDA--YGGTFRLIDKVFTRWGVEYTPVDLSDL 133 (386) T ss_pred HHHHHHHHHHCCCCEEE-ECCCC--CHHHHHHHHHHHHHCCEEEEEECCCCH T ss_conf 99999999838999899-37876--521999999998735804997788787 No 394 >COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism] Probab=27.74 E-value=29 Score=14.34 Aligned_cols=63 Identities=24% Similarity=0.130 Sum_probs=42.8 Q ss_pred EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCC--CCCCHHHHHHHHHHCCCEEEEECC Q ss_conf 443168745860257888888887531004675279733006--857999999999871989999578 Q gi|254780673|r 334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTI--RPMDWQTIFESVKKTGRLVTVEEG 399 (467) Q Consensus 334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l--~Pld~~~i~~sv~kt~~~i~vee~ 399 (467) ....+.|..-++-=.++..|.+.|+.+ |+...+-++.+- .+-+.....+..+|+|-+-|==|. T Consensus 119 ~~f~~~df~~~ad~~Ll~~a~~~A~e~---gi~~hvgnv~ssD~FY~~~~~~~~~~~~~gvlaVeMEa 183 (236) T COG0813 119 IRFKPHDFAPIADFELLEKAYETAKEL---GIDTHVGNVFSSDLFYNPDTEMFDLMAKYGVLAVEMEA 183 (236) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEH T ss_conf 015765544559999999999999983---98715521664301357877799999983973787568 No 395 >PRK08249 cystathionine gamma-synthase; Provisional Probab=27.59 E-value=38 Score=13.55 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=27.4 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCCC Q ss_conf 1223554431136506999324344588665323647540811-1011666 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTPI 194 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~pi 194 (467) |+..++...++....++ ...++ |||.+..-..++.+||=+ +++|..- T Consensus 91 Ais~~l~~ll~~Gd~vv-~~~~~--YggT~~l~~~~l~~~Gi~v~fvd~~d 138 (398) T PRK08249 91 AISNTLYTFLSPGDRVV-SIKDT--YGGTNKIFEEFLPRMGVDVTLCETGD 138 (398) T ss_pred HHHHHHHHHHCCCCEEE-ECCCC--CHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 99999999718999899-81898--43799999976015986999879998 No 396 >cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine. Probab=26.88 E-value=39 Score=13.46 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=57.3 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EE-EEECCCCCCCHH--------HHHHHHHHHHH Q ss_conf 888888753100467527973300685799999999987198----99-995788767678--------99999999967 Q gi|254780673|r 351 TYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LV-TVEEGYPQSSVG--------STIANQVQRKV 417 (467) Q Consensus 351 ~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i-~vee~~~~gg~g--------~~i~~~i~e~~ 417 (467) ..|.+|-+-|.+.||+.+++|++. .|++.+.|.+-+++++. ++ +=...|+.-|+. .++.+.+.++- T Consensus 10 ~t~rka~~~L~~~~i~~~~id~~k-~plt~~eL~~~l~~~g~~~~~lin~r~~~~k~l~l~~~~~~ls~~e~~~ll~~~P 88 (111) T cd03036 10 STCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLPSLSEEEALELLSSDG 88 (111) T ss_pred HHHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCC T ss_conf 889999999998599839996147-7959999999999949899998605761545559300131389999999998594 Q ss_pred HHHCCCCCEEECCCCCCCCCCH Q ss_conf 7642898299717778888896 Q gi|254780673|r 418 FDYLDAPILTITGRDVPMPYAA 439 (467) Q Consensus 418 f~~L~~p~~ri~~~d~p~P~~~ 439 (467) ..|+.|+..-+ ..+-+.|.+ T Consensus 89 -~LikRPIi~~~-~~~~vGf~~ 108 (111) T cd03036 89 -MLIKRPFVVDD-DKVLVGFKE 108 (111) T ss_pred -CEEECCEEEEC-CEEEECCCH T ss_conf -44755789889-999977874 No 397 >cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine. Probab=26.88 E-value=39 Score=13.46 Aligned_cols=47 Identities=21% Similarity=0.145 Sum_probs=28.6 Q ss_pred CCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH Q ss_conf 7458602578888888875310046752797330068579999999998 Q gi|254780673|r 340 DVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVK 388 (467) Q Consensus 340 ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~ 388 (467) |+||..+-.- ..+.+|..-|++.||+.+++|.+.- |++.+.+..-++ T Consensus 1 ~it~Y~~P~C-~t~rka~~~Le~~gi~~~~~d~~~~-p~t~eeL~~~l~ 47 (113) T cd03033 1 DIIFYEKPGC-ANNARQKALLEAAGHEVEVRDLLTE-PWTAETLRPFFG 47 (113) T ss_pred CEEEEECCCC-HHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHHHHHHH T ss_conf 9799978998-7579999999987999479861068-969999999998 No 398 >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process. Probab=26.81 E-value=39 Score=13.46 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=19.4 Q ss_pred EECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 4316874586025788888888753100467527973 Q gi|254780673|r 335 HRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELID 371 (467) Q Consensus 335 ~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid 371 (467) .|.|+.|.||+.|. -=|.||++|.+-|=+++|+- T Consensus 148 krTGkkVAVVGSGP---AGLAaA~qLnrAGH~VTVfE 181 (517) T TIGR01317 148 KRTGKKVAVVGSGP---AGLAAADQLNRAGHTVTVFE 181 (517) T ss_pred CCCCCEEEEECCCH---HHHHHHHHHHHCCCCEEEEE T ss_conf 44786689975675---79999999853588389974 No 399 >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Probab=26.76 E-value=39 Score=13.45 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=14.7 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC Q ss_conf 67678999999999677642898299717778888 Q gi|254780673|r 402 QSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMP 436 (467) Q Consensus 402 ~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P 436 (467) ..-+.+-+...+.++.. +-++.++.|+. T Consensus 244 ~~Pv~AivGGi~aQEVI-------K~is~k~~Pi~ 271 (286) T cd01491 244 LSPMAAFFGGLAAQEVL-------KACSGKFTPLK 271 (286) T ss_pred ECHHHHHHHHHHHHHHH-------HHHHCCCCCCC T ss_conf 88999999899999999-------98408998466 No 400 >PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated Probab=26.76 E-value=22 Score=15.17 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=31.3 Q ss_pred ECCCCCEEEEHHHHHHHH-HHHHHHHHCCCCCEEEEECCCCCCCCHH-HHHHHHHHCCCEEEEECCCCCCCHHHHHH Q ss_conf 316874586025788888-8887531004675279733006857999-99999987198999957887676789999 Q gi|254780673|r 336 RQGSDVTIISFGIGMTYA-TKAAIELEKNGIDAELIDLRTIRPMDWQ-TIFESVKKTGRLVTVEEGYPQSSVGSTIA 410 (467) Q Consensus 336 ~~G~ditii~~G~~~~~a-~~aa~~L~~~gi~~~vid~r~l~Pld~~-~i~~sv~kt~~~i~vee~~~~gg~g~~i~ 410 (467) ..|-++-|-+.|.+.+.. .--...|.+ .-.+...+..+.-++.. .+.+.++|++ ++++...|-=.|.|. T Consensus 344 ~~~~~~~iasng~~~yl~aiv~~y~l~~--~~~~~~si~~~~~~~ksdlv~~i~~~~~----i~~~~~vgdr~sdi~ 414 (459) T PRK06698 344 ENNCSIYIASNGLTEYLRAIVSYYDLDQ--WVTETFSIEQINSLNKSDLVKSILNKYD----IKEAAVVGDRLSDIN 414 (459) T ss_pred HCCCCEEEECCCHHHHHHHHHHHHHHHH--HHHHHCCHHHHHCCCHHHHHHHHHHHCC----CCCCEEECCCHHHHH T ss_conf 7499679964856999999999970678--8873135988713457689999998739----751158515155555 No 401 >TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways. Probab=26.73 E-value=39 Score=13.45 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=11.9 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHH Q ss_conf 6752797330068579999999998 Q gi|254780673|r 364 GIDAELIDLRTIRPMDWQTIFESVK 388 (467) Q Consensus 364 gi~~~vid~r~l~Pld~~~i~~sv~ 388 (467) |++---+++-|=-|++.+.+-+..+ T Consensus 145 ~v~~v~VelV~dPpW~~dmmSeeak 169 (174) T TIGR03406 145 NVDEVEVELVFDPPWSREMMSEAAK 169 (174) T ss_pred CCCEEEEEEEECCCCCHHHCCHHHH T ss_conf 9664999999889989334779999 No 402 >PRK06725 acetolactate synthase 3 catalytic subunit; Validated Probab=26.67 E-value=40 Score=13.44 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=8.5 Q ss_pred CHHHHHHHHHHHHCCC Q ss_conf 9899999999985020 Q gi|254780673|r 448 NVDEIIESVESICYKR 463 (467) Q Consensus 448 ~~~~I~~av~~v~~~~ 463 (467) +.+++-.++++.+..+ T Consensus 520 ~~~eL~~Al~~Al~~~ 535 (570) T PRK06725 520 NSTEAKQVMLEAFAHE 535 (570) T ss_pred CHHHHHHHHHHHHCCC T ss_conf 9999999999998199 No 403 >KOG2772 consensus Probab=26.64 E-value=30 Score=14.30 Aligned_cols=51 Identities=27% Similarity=0.292 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECC--------------CCCCCCHHHHHHH-HHHCC-CEEEEECCC Q ss_conf 8888888875310046752797330--------------0685799999999-98719-899995788 Q gi|254780673|r 349 GMTYATKAAIELEKNGIDAELIDLR--------------TIRPMDWQTIFES-VKKTG-RLVTVEEGY 400 (467) Q Consensus 349 ~~~~a~~aa~~L~~~gi~~~vid~r--------------~l~Pld~~~i~~s-v~kt~-~~i~vee~~ 400 (467) .+.++++|++.|+.+||+|.+-=+. -|.||= .-|+.- .+.|+ +-+...++. T Consensus 147 sTwegI~Aar~le~~GIhcnmTllFSfaQAVacAea~vtliSpFV-gRi~dw~~~~t~~ka~~~~~dp 213 (337) T KOG2772 147 STWEGIQAARELEEEGIHCNMTLLFSFAQAVACAEAGVTLISPFV-GRILDWYKANTGQKAYKAREDP 213 (337) T ss_pred CCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCEEEHHHH-HHHHHHHHHCCCCHHCCCCCCC T ss_conf 532001789999964852426425779999999862986644678-7899999964672101346894 No 404 >KOG0398 consensus Probab=26.61 E-value=40 Score=13.43 Aligned_cols=88 Identities=23% Similarity=0.285 Sum_probs=47.8 Q ss_pred CCEECCCCCHHHH--HH----HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC Q ss_conf 1101166662789--98----99998871886445666667899999999987886742117767888799830244576 Q gi|254780673|r 187 ERVIDTPITEHGF--AG----IGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR 260 (467) Q Consensus 187 ~R~~d~pi~E~~~--~G----~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~ 260 (467) +-|+|++|-|+.- .| +-.=..+.|.+|+..|. .++.+.|..+.|-++.+-|.+|| T Consensus 125 kVVvnc~~~eA~~n~~~l~~am~~~~~ITG~kP~~~~a------------r~dV~twKlR~g~p~G~kVtL~G------- 185 (278) T KOG0398 125 KVVVNCGIGEAAQNDKGLEAAMKDIALITGQKPIKTRA------------RADVATWKLREGQPLGIKVTLRG------- 185 (278) T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE------------CCCCCCEEECCCCCCEEEEEEEC------- T ss_conf 35432120776642777999999999874899620000------------15677412016972305899811------- Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCC Q ss_conf 444433216887632203138665221000105556541378 Q gi|254780673|r 261 VAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPN 302 (467) Q Consensus 261 ~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~ 302 (467) .+..+++..+-+| +.|. -.|++|+-.++-.-.+ T Consensus 186 ------~~My~FLs~L~el--vLPr-~rdfkGvSp~Sgd~~G 218 (278) T KOG0398 186 ------DVMYSFLSRLIEL--VLPR-TRDFKGVSPSSGDGNG 218 (278) T ss_pred ------HHHHHHHHHHHHH--HCCC-CCCCCCCCCCCCCCCC T ss_conf ------6799999999997--5421-0003676887768878 No 405 >pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis. Probab=26.60 E-value=40 Score=13.43 Aligned_cols=33 Identities=12% Similarity=0.291 Sum_probs=13.5 Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCC--------CEEEEECC Q ss_conf 0000000000012235544311365--------06999324 Q gi|254780673|r 134 HAPTSSITVREALRDAIAEEMRRDK--------DVFIMGEE 166 (467) Q Consensus 134 ~~~~~~~TvRea~~~a~~e~m~~d~--------~~~~~ged 166 (467) +.+...+.+.+-+.--..+.|+.|| +-|++... T Consensus 23 GHpG~~ls~adi~~~L~~~~l~~~p~~p~w~~RDRfvLS~G 63 (333) T pfam00456 23 GHPGAPMGMAPIAEVLFKRTLRHNPNDPKWPNRDRFVLSNG 63 (333) T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC T ss_conf 98206889999999999998277977989989874999674 No 406 >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. Probab=26.52 E-value=40 Score=13.42 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=35.5 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EEEEECCCCCCCHHH Q ss_conf 88888888753100467527973300685799999999987198----999957887676789 Q gi|254780673|r 349 GMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LVTVEEGYPQSSVGS 407 (467) Q Consensus 349 ~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i~vee~~~~gg~g~ 407 (467) .=..|.+|...|.+.||..+-||+-.- .+.-.+..++||+ -|.+.+-+ .||+-. T Consensus 10 ~CpyC~~AK~lL~~kgi~y~ei~l~~~----~~~~~~l~~~tg~~TVPQIFi~~~~-IGG~~d 67 (73) T cd03027 10 GCEDCTAVRLFLREKGLPYVEINIDIF----PERKAELEERTGSSVVPQIFFNEKL-VGGLTD 67 (73) T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHCCCCCCEEEECCEE-EECHHH T ss_conf 996799999999987996499988899----8999999997199975979999999-828999 No 407 >PTZ00071 40S ribosomal protein S24; Provisional Probab=26.48 E-value=40 Score=13.42 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=27.6 Q ss_pred HHHHHHHHHHHHC-CCCC-EEEEECCCCCCCCCCCCCCCH---------HHHCCCC-CEECCCCCH Q ss_conf 0012235544311-3650-699932434458866532364---------7540811-101166662 Q gi|254780673|r 143 REALRDAIAEEMR-RDKD-VFIMGEEVAEYQGAYKVTQGL---------LQEFGCE-RVIDTPITE 196 (467) Q Consensus 143 Rea~~~a~~e~m~-~d~~-~~~~gedv~~~~g~f~~t~gl---------~~~fg~~-R~~d~pi~E 196 (467) ++.|++-|++... .|++ ||+||--- .|||- -|.|+ ..+|-|. |.+-.++.| T Consensus 39 K~eirekLAkmyK~~d~d~V~vfGfrT-~FGGG--kStGFalIYDsld~~KKfEPkyRL~R~Gl~e 101 (133) T PTZ00071 39 KEDIKKRLAKLYKVADENTIVLFGFKT-KFGGG--RTTGFGLIYDNLAALKKFEPKYRLVRMGIIE 101 (133) T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCEE-CCCCC--CEEEEEEEECCHHHHHHCCCCCEEEECCCCC T ss_conf 999999999982889998799950272-47896--3102588854899997328611143236233 No 408 >KOG1549 consensus Probab=26.20 E-value=40 Score=13.38 Aligned_cols=22 Identities=14% Similarity=-0.016 Sum_probs=8.8 Q ss_pred CHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 00000012235544311365069 Q gi|254780673|r 139 SITVREALRDAIAEEMRRDKDVF 161 (467) Q Consensus 139 ~~TvRea~~~a~~e~m~~d~~~~ 161 (467) ...+-+|++..+.+. ..||+-+ T Consensus 56 ~~~Vldam~~~~~~~-~~nPh~~ 77 (428) T KOG1549 56 DPRVLDAMLPYLLEY-LGNPHSR 77 (428) T ss_pred CHHHHHHHHHHHHHH-HCCCCCC T ss_conf 989999999999985-2599855 No 409 >PRK05819 deoD purine nucleoside phosphorylase; Reviewed Probab=26.13 E-value=40 Score=13.37 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=8.5 Q ss_pred HCCCEEEEECCCCCCCH Q ss_conf 71989999578876767 Q gi|254780673|r 389 KTGRLVTVEEGYPQSSV 405 (467) Q Consensus 389 kt~~~i~vee~~~~gg~ 405 (467) |+.-+++|-++..++-+ T Consensus 195 ka~sv~~V~dnl~t~e~ 211 (235) T PRK05819 195 KALTILTVSDHIRTGEA 211 (235) T ss_pred CEEEEEEEEEEECCCCC T ss_conf 67999999633056886 No 410 >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein; InterPro: IPR010969 This entry describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulphurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N terminus. The function of members of this family are unknown.. Probab=26.10 E-value=40 Score=13.37 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=8.8 Q ss_pred CCCCHHHHHHHHHHH Q ss_conf 089989999999998 Q gi|254780673|r 445 ALPNVDEIIESVESI 459 (467) Q Consensus 445 ~~p~~~~I~~av~~v 459 (467) |+-+.+||.+.++.| T Consensus 367 yFnt~ee~~~l~~al 381 (384) T TIGR01977 367 YFNTEEEIEKLVEAL 381 (384) T ss_pred CCCCHHHHHHHHHHH T ss_conf 778889999999998 No 411 >PRK12831 putative oxidoreductase; Provisional Probab=26.05 E-value=41 Score=13.36 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=12.5 Q ss_pred CCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 6874586025788888888753100467527973300 Q gi|254780673|r 338 GSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRT 374 (467) Q Consensus 338 G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~ 374 (467) |+.+.||+=|++-..+...+..| |-++.++..|+ T Consensus 281 Gk~VvVIGGGntA~D~arta~R~---GaeV~ivyrr~ 314 (464) T PRK12831 281 GKKVAVVGGGNVAMDAARTALRL---GAEVHIVYRRS 314 (464) T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEECCCC T ss_conf 87789988855689999988742---97799970457 No 412 >TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. . Probab=25.94 E-value=41 Score=13.35 Aligned_cols=35 Identities=11% Similarity=0.196 Sum_probs=16.5 Q ss_pred HHHHHCCCEE-EEEECCHHCCCHHHHHHHC--CCCEEE Q ss_conf 7632203138-6652210001055565413--783476 Q gi|254780673|r 272 WYSHVPGLKV-VIPYTASDAKGLLKAAIRD--PNPVIF 306 (467) Q Consensus 272 ~~~~iPgl~V-~~P~~~~d~~~ll~~ai~~--~~Pvi~ 306 (467) ++..+|...+ +-|.+...+-.++..+... ..++++ T Consensus 90 l~~~~p~~d~~~G~~~~~~~~~~i~~~~~g~~~~~~~~ 127 (455) T TIGR00089 90 LLKRIPEVDIVLGTQDVERIPELINSAEEGLREKQVVE 127 (455) T ss_pred HHHHCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 99645856999843137889999999863853335562 No 413 >PRK06703 flavodoxin; Provisional Probab=25.83 E-value=41 Score=13.34 Aligned_cols=52 Identities=6% Similarity=0.040 Sum_probs=23.3 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH Q ss_conf 78888888875310046752797330068579999999998719899995788767678 Q gi|254780673|r 348 IGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVG 406 (467) Q Consensus 348 ~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g 406 (467) +.-..|...++.|...|+.++++++....+-+ +.+...++++--.|-.|-+- T Consensus 14 nte~~A~~i~~~l~~~g~~v~~~~~~~~~~~~-------l~~~d~li~gtsT~G~Ge~P 65 (151) T PRK06703 14 NTEDIADLIKVSLDAFDHEVVLQEMDGMDAEE-------LLAYDGIILGSYTWGDGDLP 65 (151) T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-------HHCCCCEEEEEECCCCCCCC T ss_conf 78999999999998579963897603199889-------84288459997337998684 No 414 >TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190 This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised .. Probab=25.81 E-value=41 Score=13.33 Aligned_cols=112 Identities=16% Similarity=0.191 Sum_probs=64.2 Q ss_pred HHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHH Q ss_conf 68876322031386652210001055565413783476402123333345334663121443114443168745860257 Q gi|254780673|r 269 YAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGI 348 (467) Q Consensus 269 ~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~ 348 (467) .+..+..-|-|.++.=-+-.|+..+= +..+-|+ | . .-+.+...++=|+.|+|.|+ T Consensus 18 V~~ai~~~PDmElvgv~~Rrd~~t~~---va~~~~v--------y------------~--V~~~~K~~~dvdv~iLC~gs 72 (326) T TIGR01921 18 VEEAIQQAPDMELVGVFRRRDAETLD---VAEELAV--------Y------------A--VVEDEKELEDVDVLILCTGS 72 (326) T ss_pred HHHHHHCCCCCEEEEEEEECCCCCCC---HHHCCCH--------H------------H--HHHHHHCCCCEEEEEECCCC T ss_conf 99998408980489988707887576---1122520--------2------------2--22223202882599973886 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH Q ss_conf 8888888875310046752797330068579999999998719899995788767678 Q gi|254780673|r 349 GMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVG 406 (467) Q Consensus 349 ~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g 406 (467) ..-+ -++++.|+.-=--++=+|.|+=-|=-.+++-+..++.|++=||--||-=|.|+ T Consensus 73 atd~-pe~~p~fA~~~nTvDsfD~H~~Ip~~r~~~DaaA~~~g~VSvis~GWDPG~fS 129 (326) T TIGR01921 73 ATDL-PEQKPYFAAFINTVDSFDIHTDIPDLRRTLDAAAKEAGAVSVISAGWDPGLFS 129 (326) T ss_pred CCCC-CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH T ss_conf 4555-43451001221012365022420789999999998619878998347887267 No 415 >PRK05321 nicotinate phosphoribosyltransferase; Provisional Probab=25.78 E-value=41 Score=13.33 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=62.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH-CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 5788888888753100467527973300685799999999987-198999957887676789999999996776428982 Q gi|254780673|r 347 GIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKK-TGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPI 425 (467) Q Consensus 347 G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~k-t~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~ 425 (467) |-....+.++.+.+.+.|++...--+-+=.-||++.|.+..+. .+++.+ ..|+|..+..-. .+..-|+.-. T Consensus 284 GD~~~~~~k~~~~~~~~g~dp~~k~iv~Sd~Lde~~i~~L~~~~~~~i~~------sfGIGT~Lt~D~--~~~~~L~~Vy 355 (400) T PRK05321 284 GDPFEWGEKAIAHYEKLGIDPRTKTLVFSDGLDLDKALELYRHFRGRIRL------SFGIGTNLTNDL--PGVKPLNIVI 355 (400) T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCC------EEECCCCCCCCC--CCCCCCCEEE T ss_conf 78789999999999976999666479986999999999999986278764------575475510589--9998665788 Q ss_pred EEECCCCCC-CCCCHHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf 997177788-88896676560899899999999985020 Q gi|254780673|r 426 LTITGRDVP-MPYAANLEKLALPNVDEIIESVESICYKR 463 (467) Q Consensus 426 ~ri~~~d~p-~P~~~~le~~~~p~~~~I~~av~~v~~~~ 463 (467) +.+-....| +-.|.+.+|...++ .++....|+|+.-. T Consensus 356 KLve~~G~P~~KlSd~~~K~t~~~-~~~~~~~~~~f~~~ 393 (400) T PRK05321 356 KLVECNGQPVAKLSDSPGKTMCDD-PEFLRYLRQVFGVP 393 (400) T ss_pred EEEEECCEEEEEECCCCCCCCCCC-HHHHHHHHHHCCCC T ss_conf 877668842345048977656997-89999999980999 No 416 >PRK05320 rhodanese superfamily protein; Provisional Probab=25.76 E-value=41 Score=13.33 Aligned_cols=95 Identities=24% Similarity=0.385 Sum_probs=52.1 Q ss_pred CHHCCCHHHHHHHCC-CCEEEECCCCCCCCC---C---CCCCCCCEE-CC--CCCEEEEECCCCCEEEEHHHHHHHHHHH Q ss_conf 100010555654137-834764021233333---4---533466312-14--4311444316874586025788888888 Q gi|254780673|r 287 ASDAKGLLKAAIRDP-NPVIFLENEILYGSS---F---EVPMVDDLV-IP--IGRARIHRQGSDVTIISFGIGMTYATKA 356 (467) Q Consensus 287 ~~d~~~ll~~ai~~~-~Pvi~le~~~ly~~~---~---~~p~~~~~~-~p--~Gk~~i~~~G~ditii~~G~~~~~a~~a 356 (467) |.+...++.....+. .+|++|.-|.-|... | --|....|. +| +.+-.-..+++.|.+.++|.- .|.+| T Consensus 114 p~~~~~~~~~~~d~~~~~vvvID~RN~YE~~IG~Fk~Ai~P~~~~Frefp~~v~~~~~~~k~K~I~myCTGGI--RCEKa 191 (257) T PRK05320 114 AATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRADLEGKTVVSFCTGGI--RCEKA 191 (257) T ss_pred CCCHHHHHHHCCCCCCCCEEEEECCCHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC--CHHHH T ss_conf 0379999864235567846999554333320416678528897467777999997354225982999858980--28999 Q ss_pred HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCC Q ss_conf 75310046752797330068579999999998719 Q gi|254780673|r 357 AIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTG 391 (467) Q Consensus 357 a~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~ 391 (467) +..|.++|++ + +.-|+ -.|++-.++++ T Consensus 192 s~yl~~~Gf~-~------VyqL~-GGIl~Y~~~~~ 218 (257) T PRK05320 192 AIHMKEVGID-N------VYQLE-GGILKYFEEVG 218 (257) T ss_pred HHHHHHCCCC-E------EEEEC-CHHHHHHHHCC T ss_conf 9999875998-4------36746-11999998769 No 417 >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated Probab=25.65 E-value=41 Score=13.31 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=28.5 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCCCCHH Q ss_conf 1223554431136506999324344588665323647540811-1011666627 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTPITEH 197 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~pi~E~ 197 (467) |+.-++...++....+ +...++ |||.+..-+.++.+||=+ +++|-+-... T Consensus 96 Ai~~~ll~ll~~Gdhi-v~~~~~--YggT~~l~~~~l~~~Gi~v~fv~d~~d~~ 146 (436) T PRK07812 96 AETFAILNLAGAGDHI-VSSPRL--YGGTYNLFHYTLPKLGIEVSFVEDPDDLD 146 (436) T ss_pred HHHHHHHHHHCCCCEE-EEECCC--CCCHHHHHHHHHHHCCCCEEEECCCCCHH T ss_conf 9999999961889889-994886--68789999999765287416967998899 No 418 >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. Probab=25.61 E-value=41 Score=13.31 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=15.4 Q ss_pred CCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 7458602578888888875310046752797330 Q gi|254780673|r 340 DVTIISFGIGMTYATKAAIELEKNGIDAELIDLR 373 (467) Q Consensus 340 ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r 373 (467) |..|-+.|.+-.+| .+.|+++..+..+ T Consensus 321 ~~~iA~vGlTE~eA-------~~~g~~~~~~~~~ 347 (427) T TIGR03385 321 DLTIASTGVTENEA-------KRLNIDYKTVFVK 347 (427) T ss_pred CCCEEEECCCHHHH-------HHCCCCEEEEEEC T ss_conf 92559973849999-------8779987999986 No 419 >TIGR00511 aIF-2BII_fam translation initiation factor, putative, aIF-2BII family; InterPro: IPR005250 The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. So far, members of this family are found only in the euryarchaeota.. Probab=25.60 E-value=37 Score=13.62 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=10.9 Q ss_pred CCCEEEEEECCHHCCCHHHHHHHC Q ss_conf 031386652210001055565413 Q gi|254780673|r 277 PGLKVVIPYTASDAKGLLKAAIRD 300 (467) Q Consensus 277 Pgl~V~~P~~~~d~~~ll~~ai~~ 300 (467) .|-+|+.-+|..-+-...+.|... T Consensus 116 DG~T~lTHCNS~AA~SVIK~A~~~ 139 (303) T TIGR00511 116 DGDTVLTHCNSEAALSVIKKAYDE 139 (303) T ss_pred CCCEEEEECCHHHHHHHHHHHHHC T ss_conf 787155300506799999877536 No 420 >cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain. Probab=25.59 E-value=41 Score=13.31 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=30.8 Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC Q ss_conf 88888887531004675279733006857999999999871 Q gi|254780673|r 350 MTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKT 390 (467) Q Consensus 350 ~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt 390 (467) +.-+....+.|..-||.+++|-+|+=.|++.+...+...-+ T Consensus 187 TKPTQhSVk~Lr~~GI~PDiivcRse~~l~~~~k~KIa~fc 227 (255) T cd03113 187 TKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFC 227 (255) T ss_pred CCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHC T ss_conf 66428999999975899887998057869978999999854 No 421 >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] Probab=25.49 E-value=41 Score=13.29 Aligned_cols=53 Identities=26% Similarity=0.490 Sum_probs=36.5 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCCCCHHHHH Q ss_conf 1223554431136506999324344588665323647540811-1011666627899 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTPITEHGFA 200 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~pi~E~~~~ 200 (467) ||..++...++....++ +..|+ |||.|.....+.+|||=+ +++|....+.... T Consensus 90 AI~~~~l~ll~~GD~vl-~~~~~--YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~ 143 (396) T COG0626 90 AISTALLALLKAGDHVL-LPDDL--YGGTYRLFEKILQKFGVEVTFVDPGDDEALEA 143 (396) T ss_pred HHHHHHHHHCCCCCEEE-ECCCC--CCHHHHHHHHHHHHCCEEEEEECCCCHHHHHH T ss_conf 99999998357999898-45776--43299999999985685999978997588998 No 422 >cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined. Probab=25.36 E-value=24 Score=14.94 Aligned_cols=39 Identities=21% Similarity=0.448 Sum_probs=25.9 Q ss_pred EEEECCCCCEEEEHHH--HHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 4443168745860257--88888888753100467527973 Q gi|254780673|r 333 RIHRQGSDVTIISFGI--GMTYATKAAIELEKNGIDAELID 371 (467) Q Consensus 333 ~i~~~G~ditii~~G~--~~~~a~~aa~~L~~~gi~~~vid 371 (467) +++.++-++.||+.|. .+...-++.+.|.+.||.+.+-+ T Consensus 53 ~ll~~~~evlviGTG~~g~l~v~p~~~~~l~~~gi~v~~~~ 93 (117) T cd05126 53 ELLEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLP 93 (117) T ss_pred HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEC T ss_conf 99971999999858968656489999999997598189837 No 423 >KOG2012 consensus Probab=25.35 E-value=35 Score=13.85 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=16.7 Q ss_pred CEEEEHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCHH Q ss_conf 45860257888888887531004--675279733006857999 Q gi|254780673|r 341 VTIISFGIGMTYATKAAIELEKN--GIDAELIDLRTIRPMDWQ 381 (467) Q Consensus 341 itii~~G~~~~~a~~aa~~L~~~--gi~~~vid~r~l~Pld~~ 381 (467) +|+=.+=+...++++.|..+.+. .-+++.+|...-.|--.+ T Consensus 594 CTlknFPn~IeHTiqWAR~eFEg~F~~~~e~vN~yls~p~f~e 636 (1013) T KOG2012 594 CTLKSFPNAIEHTIQWARDEFEGLFKQSAENVNKYLSDPVFYE 636 (1013) T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH T ss_conf 4504684577899999999978776178999998865811777 No 424 >cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown. Probab=25.33 E-value=35 Score=13.83 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=25.5 Q ss_pred CCCEEEEHHHH-HHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 87458602578-888888875310046752797330 Q gi|254780673|r 339 SDVTIISFGIG-MTYATKAAIELEKNGIDAELIDLR 373 (467) Q Consensus 339 ~ditii~~G~~-~~~a~~aa~~L~~~gi~~~vid~r 373 (467) -|+.|+++|.. .....+..+.|.++||.+|+-|-. T Consensus 53 peilliGtG~~~~~~~~~~~~~l~~~gI~vE~M~T~ 88 (109) T cd05560 53 PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109) T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCH T ss_conf 968999448865799999999999859905996769 No 425 >PRK10853 hypothetical protein; Provisional Probab=25.19 E-value=42 Score=13.26 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=52.5 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC-EEEEE--CCCCCCC--------HHHHHHHHHHHHHHHH Q ss_conf 88888753100467527973300685799999999987198-99995--7887676--------7899999999967764 Q gi|254780673|r 352 YATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR-LVTVE--EGYPQSS--------VGSTIANQVQRKVFDY 420 (467) Q Consensus 352 ~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~-~i~ve--e~~~~gg--------~g~~i~~~i~e~~f~~ 420 (467) .|.+|.+-|.++||+.+.+|+|- .|++.+.+..-+++.|. -++=- -.|+.-+ -..+..+.+.++. .. T Consensus 12 TckKA~kwL~~~~i~y~f~D~k~-~~~~~~~l~~wl~~~G~~~liN~rgtt~R~L~~~~k~~~~~~~~~~~Ll~~~p-~L 89 (118) T PRK10853 12 TIKKARRWLEENGIDYRFHDYRV-DGLDSELLNGFIAELGWEALLNTRGTTWRKLDETQRNAITDAASAAALMLEQP-AI 89 (118) T ss_pred HHHHHHHHHHHCCCCCEEEECCC-CCCCHHHHHHHHHHCCHHHHHCCCCCHHHHCCHHHHHCCCCHHHHHHHHHHCC-CC T ss_conf 99999999998799818963114-69899999999996298987516663566468745312488899999998686-74 Q ss_pred CCCCCEEECCCCCCCCCCHHHHHH Q ss_conf 289829971777888889667656 Q gi|254780673|r 421 LDAPILTITGRDVPMPYAANLEKL 444 (467) Q Consensus 421 L~~p~~ri~~~d~p~P~~~~le~~ 444 (467) ++.|+.-.....+-+.|.+..-+. T Consensus 90 IKRPvi~~~~~~~~vGF~e~~y~~ 113 (118) T PRK10853 90 IKRPLLCAPGKPMLLGFSESSYQQ 113 (118) T ss_pred CCCCEEEECCCEEEECCCHHHHHH T ss_conf 257769848987996279999999 No 426 >PRK07525 sulfoacetaldehyde acetyltransferase; Validated Probab=25.10 E-value=42 Score=13.25 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=4.7 Q ss_pred HHHHHHHHHHHHH Q ss_conf 2789989999887 Q gi|254780673|r 196 EHGFAGIGIGASF 208 (467) Q Consensus 196 E~~~~G~a~G~A~ 208 (467) |++.+.+|-|+|. T Consensus 52 E~~A~~mAdgyar 64 (589) T PRK07525 52 EQNAGHMADGYTR 64 (589) T ss_pred HHHHHHHHHHHHH T ss_conf 8999999999999 No 427 >TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121 Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres. In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity. Probab=25.00 E-value=42 Score=13.23 Aligned_cols=10 Identities=40% Similarity=0.870 Sum_probs=3.5 Q ss_pred CCEEEEHHHH Q ss_conf 7458602578 Q gi|254780673|r 340 DVTIISFGIG 349 (467) Q Consensus 340 ditii~~G~~ 349 (467) |+|=.|||+. T Consensus 817 DLTQ~TfG~S 826 (920) T TIGR01828 817 DLTQMTFGFS 826 (920) T ss_pred CHHHCCCCCC T ss_conf 2002135511 No 428 >PRK06714 S-adenosylhomocysteine nucleosidase; Validated Probab=24.96 E-value=26 Score=14.72 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=19.2 Q ss_pred CCCCCC-----CCCCHHHHCCCCCEECCCCC Q ss_conf 588665-----32364754081110116666 Q gi|254780673|r 170 YQGAYK-----VTQGLLQEFGCERVIDTPIT 195 (467) Q Consensus 170 ~~g~f~-----~t~gl~~~fg~~R~~d~pi~ 195 (467) ..|+-| +|.-|.++|+|+.++++|++ T Consensus 48 ~sGIGKVnAA~~t~~LI~~F~~d~IIntGvA 78 (236) T PRK06714 48 ITGVGKVSCASCVQLLISEFQPDELFMTGIC 78 (236) T ss_pred ECCCCHHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 6782299999999999984499999987863 No 429 >PRK00045 hemA glutamyl-tRNA reductase; Reviewed Probab=24.91 E-value=43 Score=13.22 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=4.9 Q ss_pred HHHHHHHHHH Q ss_conf 7899899998 Q gi|254780673|r 197 HGFAGIGIGA 206 (467) Q Consensus 197 ~~~~G~a~G~ 206 (467) .|+.-+|+|| T Consensus 98 ~HLfrVasGL 107 (429) T PRK00045 98 RHLFRVASGL 107 (429) T ss_pred HHHHHHHHCC T ss_conf 9999997332 No 430 >PRK05967 cystathionine beta-lyase; Provisional Probab=24.63 E-value=43 Score=13.19 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=29.4 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCCC Q ss_conf 1223554431136506999324344588665323647540811-1011666 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTPI 194 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~pi 194 (467) |+.-++...++....++ ...++ |||.+..-+.++.+||=+ +++|.-. T Consensus 91 Ai~~~ll~~l~~Gdhiv-~~~~~--YggT~~l~~~~l~~~Gi~v~~vd~~~ 138 (392) T PRK05967 91 AVTVPLLGFLSAGDHAL-IVDSV--YYPTRHFADTMLKRLGVEVEYYDPEI 138 (392) T ss_pred HHHHHHHHHHCCCCEEE-ECCCC--CCHHHHHHHHHHHHCCEEEEEECCCC T ss_conf 99999999738998899-44898--44589999998763686999988999 No 431 >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed Probab=24.60 E-value=43 Score=13.18 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=36.4 Q ss_pred EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC--CCCHHHHHHHHH Q ss_conf 4431687458602578888888875310046752797330068--579999999998 Q gi|254780673|r 334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIR--PMDWQTIFESVK 388 (467) Q Consensus 334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~--Pld~~~i~~sv~ 388 (467) +...|+.+.+|+=|++-..+...|..|-. -++.++--|+.. |-..+.+..+.+ T Consensus 464 i~~~GK~VvVIGGGntAmDcaRtA~RlGA--~~Vt~vYRR~~~eMPA~~~Ev~~A~E 518 (654) T PRK12769 464 INTAGLNVVVLGGGDTAMDCVRTALRHGA--SNVTCAYRRDEANMPGSKKEVKNARE 518 (654) T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--CEEEECCCCCCCCCCCCHHHHHHHHH T ss_conf 55557558998887246999999997599--83660454672349987566557885 No 432 >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Probab=24.57 E-value=35 Score=13.79 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=16.3 Q ss_pred HHCCCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCC Q ss_conf 2203138665221000105556541378347640212 Q gi|254780673|r 275 HVPGLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEI 311 (467) Q Consensus 275 ~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ 311 (467) .-||-+|.+|++..= +|-..++.=+-|+++.|.. T Consensus 328 a~~Ga~V~A~AdG~V---vyA~~l~GYG~vvIldhG~ 361 (420) T COG4942 328 ASAGATVKAIADGRV---VYADWLRGYGLVVILDHGG 361 (420) T ss_pred CCCCCEEEECCCCEE---EECHHHCCCCEEEEEECCC T ss_conf 599982562069569---9543325675699997488 No 433 >PRK11536 hypothetical protein; Provisional Probab=24.54 E-value=38 Score=13.56 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=4.0 Q ss_pred ECCCCCEEEE Q ss_conf 3168745860 Q gi|254780673|r 336 RQGSDVTIIS 345 (467) Q Consensus 336 ~~G~ditii~ 345 (467) +.|+.+.++. T Consensus 155 ~agD~i~l~~ 164 (223) T PRK11536 155 SADAPLELVS 164 (223) T ss_pred CCCCEEEEEE T ss_conf 6999789973 No 434 >cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution. Probab=24.50 E-value=43 Score=13.19 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=12.9 Q ss_pred HHHHHHHHHHHHHCCCCCEEEE Q ss_conf 8888888875310046752797 Q gi|254780673|r 349 GMTYATKAAIELEKNGIDAELI 370 (467) Q Consensus 349 ~~~~a~~aa~~L~~~gi~~~vi 370 (467) .+.+.++|++.|+++||.|-+- T Consensus 133 aTweGi~A~~~Le~~GI~~n~T 154 (313) T cd00957 133 ATWEGIQAAKQLEKEGIHCNLT 154 (313) T ss_pred CCHHHHHHHHHHHHCCCCEEEE T ss_conf 8788999999999749854367 No 435 >PRK00037 hisS histidyl-tRNA synthetase; Reviewed Probab=24.49 E-value=43 Score=13.17 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=36.5 Q ss_pred CCCEEEEHH-HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEC Q ss_conf 874586025-788888888753100467527973300685799999999987198999957 Q gi|254780673|r 339 SDVTIISFG-IGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEE 398 (467) Q Consensus 339 ~ditii~~G-~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee 398 (467) .++.|+..+ .....|++.+..|.++||.|+ +|++.- .+....=...-.+...+|+|-+ T Consensus 324 ~~v~v~~~~~~~~~~a~~i~~~Lr~~gi~v~-~~~~~~-~l~k~~~~A~~~~~~~~vivG~ 382 (417) T PRK00037 324 VDVYVVVLGEEAEAAALKLAEKLRAAGIRVE-LDLGGR-KLKKQFKYADKSGARFALILGE 382 (417) T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHCCCEEE-EECCCC-CHHHHHHHHHHCCCCEEEEECC T ss_conf 7679996598999999999999998899699-958998-9999999999879799999874 No 436 >PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed Probab=24.31 E-value=44 Score=13.15 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=8.5 Q ss_pred HHHHHHHHHCCCCCEEEE Q ss_conf 223554431136506999 Q gi|254780673|r 146 LRDAIAEEMRRDKDVFIM 163 (467) Q Consensus 146 ~~~a~~e~m~~d~~~~~~ 163 (467) ..+.+++.+++..+|.++ T Consensus 87 ~a~~i~~~l~~G~~Va~l 104 (241) T PRK05990 87 SAEAVAAHLDAGRDVAVI 104 (241) T ss_pred HHHHHHHHHHCCCEEEEE T ss_conf 999999999769969999 No 437 >PRK07503 methionine gamma-lyase; Provisional Probab=24.23 E-value=44 Score=13.14 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=27.7 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC-CCEECCCC Q ss_conf 122355443113650699932434458866532364754081-11011666 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGC-ERVIDTPI 194 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~-~R~~d~pi 194 (467) |+..++...++....+ +...++ |||.+..-+.++.+||= -+++|.-- T Consensus 92 Ai~~~l~~~l~~Gdhi-v~~~~~--YGgt~~l~~~~l~~~Gi~~~~vd~~d 139 (403) T PRK07503 92 AITATLWTLLRPGDEV-IVGRTL--YGCTFAFLHHGLGEFGVKVRHVDLTD 139 (403) T ss_pred HHHHHHHHHCCCCCEE-EECCCC--CCCHHHHHHHHHHHCCEEEEEECCCC T ss_conf 9999999965999989-976887--53289999844631775999868989 No 438 >PRK07631 amidophosphoribosyltransferase; Provisional Probab=24.14 E-value=44 Score=13.12 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=36.2 Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC Q ss_conf 9998719899995788767678999999999677642898299717778--88889 Q gi|254780673|r 385 ESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA 438 (467) Q Consensus 385 ~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~ 438 (467) +++-|-+++|+|||+...|--...|...+-+-+- +.--.|+++|.+ |+.|+ T Consensus 343 ~~~v~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGA---keVh~ri~sPpi~~pc~yG 395 (475) T PRK07631 343 RGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGA---TEVHVRISSPPIAHPCFYG 395 (475) T ss_pred CCCCCCCEEEEEECCEECCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC T ss_conf 2003897379974435106419999999997699---8899996899857876664 No 439 >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou Probab=24.11 E-value=44 Score=13.12 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=37.8 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EEEEECCCCCCCHHHH Q ss_conf 88888888753100467527973300685799999999987198----9999578876767899 Q gi|254780673|r 349 GMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LVTVEEGYPQSSVGST 408 (467) Q Consensus 349 ~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i~vee~~~~gg~g~~ 408 (467) .=..|.+|.+.|.+.||..+.+|+.. |.+...+..+.+|. .|++.+ ...+||-.+ T Consensus 9 ~C~~C~~ak~~L~~~gi~y~~~di~~----d~~~~~~l~~~~g~~~vP~i~i~~-~~i~Gf~~~ 67 (73) T cd02976 9 DCPYCKATKRFLDERGIPFEEVDVDE----DPEALEELKKLNGYRSVPVVVIGD-EHLSGFRPD 67 (73) T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHCCCCCCCEEEECC-EEEECCCHH T ss_conf 99779999999998399049998799----999999999865999618899999-999387999 No 440 >pfam00274 Glycolytic Fructose-bisphosphate aldolase class-I. Probab=24.10 E-value=44 Score=13.12 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=18.8 Q ss_pred CCCHHHHHHHHHHHHH-------CCCCCHHH---HHHHHH Q ss_conf 6662789989999887-------18864456---666678 Q gi|254780673|r 193 PITEHGFAGIGIGASF-------AGLKPIVE---FMTFNF 222 (467) Q Consensus 193 pi~E~~~~G~a~G~A~-------~G~~Piv~---~~~~~f 222 (467) --|+.++.--|-+||. +|+-|||| .|..+. T Consensus 143 ~PS~~~I~~Na~~LArYA~icQ~~glVPIVEPEVlmdG~H 182 (348) T pfam00274 143 TPSELAIEENANVLARYAAICQQNGLVPIVEPEILLDGDH 182 (348) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCC T ss_conf 9859999999999999999998659622003313104765 No 441 >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Probab=23.99 E-value=44 Score=13.10 Aligned_cols=60 Identities=25% Similarity=0.249 Sum_probs=40.0 Q ss_pred ECCCCCEEEEHHHHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCC--CEEEEECC Q ss_conf 316874586025788-88888875310046752797330068579999999998719--89999578 Q gi|254780673|r 336 RQGSDVTIISFGIGM-TYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTG--RLVTVEEG 399 (467) Q Consensus 336 ~~G~ditii~~G~~~-~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~--~~i~vee~ 399 (467) ....|+.|++.|... ..|++.+..|.+.||++++.-...- ...-++.+.|-+ -+|++-|. T Consensus 333 ~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~----~k~q~k~A~~~g~~~~viiGe~ 395 (429) T COG0124 333 ETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRK----LKKQFKYADKLGARFAVILGED 395 (429) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHCCCCEEEEECCH T ss_conf 77788899984861599999999999975994899855656----8999999987799889998525 No 442 >COG0176 MipB Transaldolase [Carbohydrate transport and metabolism] Probab=23.98 E-value=41 Score=13.33 Aligned_cols=71 Identities=24% Similarity=0.206 Sum_probs=43.6 Q ss_pred HHHHCCC-EEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHH Q ss_conf 6322031-386652210001055565413783476402123333345334663121443114443168745860257888 Q gi|254780673|r 273 YSHVPGL-KVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMT 351 (467) Q Consensus 273 ~~~iPgl-~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~ 351 (467) ...+||- .++.|.-..|+.+|++.|.+.-. +|++. | +.| ==.++. T Consensus 57 ~~~v~G~v~e~~~~ls~d~e~mi~eA~~L~~---------~~~~~-------------~----------i~I--KIP~T~ 102 (239) T COG0176 57 LKIVPGRVTEVDEVLSFDAEAMIEEARRLAK---------LIDNV-------------G----------IVI--KIPATW 102 (239) T ss_pred HHCCCCCCEEEEEEECCCHHHHHHHHHHHHH---------HCCCC-------------C----------EEE--EECCCH T ss_conf 8347998737641002368999999999998---------64877-------------7----------389--948888 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCC Q ss_conf 88888753100467527973300685 Q gi|254780673|r 352 YATKAAIELEKNGIDAELIDLRTIRP 377 (467) Q Consensus 352 ~a~~aa~~L~~~gi~~~vid~r~l~P 377 (467) +-++|++.|.++||+|.+-=+.+..- T Consensus 103 eGl~Ai~~L~~eGI~~NvTLiFS~~Q 128 (239) T COG0176 103 EGLKAIKALEAEGIKTNVTLIFSAAQ 128 (239) T ss_pred HHHHHHHHHHHCCCEEEEEEEECHHH T ss_conf 78999999997897065888846899 No 443 >PRK07272 amidophosphoribosyltransferase; Provisional Probab=23.87 E-value=44 Score=13.09 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=53.1 Q ss_pred CCCEEEEH--HHHHHHHHHHHHHH---HCCCC-CEEEEECCCCCCCCH--HH-------HHHHHHHCCCEEEEECCCCCC Q ss_conf 87458602--57888888887531---00467-527973300685799--99-------999998719899995788767 Q gi|254780673|r 339 SDVTIISF--GIGMTYATKAAIEL---EKNGI-DAELIDLRTIRPMDW--QT-------IFESVKKTGRLVTVEEGYPQS 403 (467) Q Consensus 339 ~ditii~~--G~~~~~a~~aa~~L---~~~gi-~~~vid~r~l~Pld~--~~-------i~~sv~kt~~~i~vee~~~~g 403 (467) -|..+|.. -+....|+--|+.+ .++|+ .-.-+.=.||.|=+. +. -++++-|-+++|+|||+...| T Consensus 284 ~~~DvVi~VPdSg~~aA~Gya~~~gip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~~~~~i~gK~vvlVDDSIVRG 363 (484) T PRK07272 284 VDADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRG 363 (484) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCCCC T ss_conf 77872500788538999999987299511051450311345789967888873634010254553797599982541126 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC Q ss_conf 678999999999677642898299717778--88889 Q gi|254780673|r 404 SVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA 438 (467) Q Consensus 404 g~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~ 438 (467) --...|...+-+-+- +.--.|+++|.+ |+.|+ T Consensus 364 tT~k~iv~~Lr~aGA---keVh~rissPpi~~pc~yG 397 (484) T PRK07272 364 TTSRRIVKLLKEAGA---KEVHVRIASPELKYPCFYG 397 (484) T ss_pred CCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC T ss_conf 759999999997799---8899996899857875565 No 444 >TIGR02408 ectoine_ThpD ectoine hydroxylase; InterPro: IPR012774 Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.; GO: 0016725 oxidoreductase activity acting on CH or CH2 groups. Probab=23.74 E-value=29 Score=14.43 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=35.5 Q ss_pred HHHHHHHHHHHH--HHCCCEEEEEECCHHCCCHHHHHHHCCCCEEEEC--CCCCCCCCCCCCCC Q ss_conf 443321688763--2203138665221000105556541378347640--21233333453346 Q gi|254780673|r 263 AQHSQCYAAWYS--HVPGLKVVIPYTASDAKGLLKAAIRDPNPVIFLE--NEILYGSSFEVPMV 322 (467) Q Consensus 263 ~~Hs~~~~~~~~--~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le--~~~ly~~~~~~p~~ 322 (467) .+|| +||.|.+ ++|+|+-++.|= +|-.=...++|.+++. ||--|+.-+|.|.+ T Consensus 126 YWHS-DFETWHaEDGmP~~RavScSi------aLT~N~~tNG~LM~~PGSH~tF~~CvGETP~D 182 (278) T TIGR02408 126 YWHS-DFETWHAEDGMPAMRAVSCSI------ALTENYETNGSLMVVPGSHKTFLSCVGETPKD 182 (278) T ss_pred EECC-CCCCCCHHCCCCHHHHHHHHH------HHCCCCCCCCCEEEECCCCCCCCCCCCCCCCC T ss_conf 2107-732000322762134654445------41157777886365268630126688889861 No 445 >PRK13374 purine nucleoside phosphorylase; Provisional Probab=23.72 E-value=45 Score=13.07 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=8.9 Q ss_pred HCCCEEEEECCCCCCC Q ss_conf 7198999957887676 Q gi|254780673|r 389 KTGRLVTVEEGYPQSS 404 (467) Q Consensus 389 kt~~~i~vee~~~~gg 404 (467) |+.-+++|-++..++- T Consensus 196 kA~svl~V~dn~~~~e 211 (233) T PRK13374 196 EALAILTVSDHIITGE 211 (233) T ss_pred CEEEEEEEEEECCCCC T ss_conf 5789999960047687 No 446 >cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif. Probab=23.71 E-value=45 Score=13.07 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=55.2 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EE-EEECCCCCCCH------HHHHHHHHHHHHHH Q ss_conf 888888753100467527973300685799999999987198----99-99578876767------89999999996776 Q gi|254780673|r 351 TYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LV-TVEEGYPQSSV------GSTIANQVQRKVFD 419 (467) Q Consensus 351 ~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i-~vee~~~~gg~------g~~i~~~i~e~~f~ 419 (467) ..|.+|.+.|.++||+.+++|.+- .|++.+.+.+-+++++. ++ +=+..|+.-++ -.++...+.++. . T Consensus 11 st~rkA~~~L~~~~i~~~~~d~~k-~~~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~~~~~~ls~~e~~~ll~~~P-~ 88 (115) T cd03032 11 SSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDIDELSLSELIRLISEHP-S 88 (115) T ss_pred HHHHHHHHHHHHCCCCEEEEEEEC-CCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHCC-C T ss_conf 899999999998699718997425-89699999999998379999998632346776177732189999999999584-1 Q ss_pred HCCCCCEEECCCCCCCCCCHHHHHHCCC Q ss_conf 4289829971777888889667656089 Q gi|254780673|r 420 YLDAPILTITGRDVPMPYAANLEKLALP 447 (467) Q Consensus 420 ~L~~p~~ri~~~d~p~P~~~~le~~~~p 447 (467) .++.|+.. ....+-+.|.+.--+.++| T Consensus 89 LikRPIv~-~~~~~~iGf~~e~~~~~lp 115 (115) T cd03032 89 LLRRPIII-DEKRLQIGYNEDEIRQFLP 115 (115) T ss_pred EEEEEEEE-ECCEEEECCCHHHHHHHCC T ss_conf 06401797-3998997379899997584 No 447 >PRK02304 adenine phosphoribosyltransferase; Provisional Probab=23.69 E-value=45 Score=13.07 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=25.4 Q ss_pred EECCCCCEE----EEHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCCC Q ss_conf 431687458----60257888888887531004675-27973300685 Q gi|254780673|r 335 HRQGSDVTI----ISFGIGMTYATKAAIELEKNGID-AELIDLRTIRP 377 (467) Q Consensus 335 ~~~G~diti----i~~G~~~~~a~~aa~~L~~~gi~-~~vid~r~l~P 377 (467) +.+|+.+.| ++.|.++..+.+..++...+=+. +-+||+..++- T Consensus 110 i~~g~~VlivDDvlaTGGT~~a~~~Lv~~~ga~v~~~~~liel~~l~G 157 (174) T PRK02304 110 IKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGG 157 (174) T ss_pred CCCCCEEEEEEEHHHHCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC T ss_conf 589999999971543071799999999987998999999998187884 No 448 >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed Probab=23.64 E-value=45 Score=13.06 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEC Q ss_conf 999999878867421177678887998302 Q gi|254780673|r 226 AIDQIINSAAKTRYMSGGQITTSIVFRGPN 255 (467) Q Consensus 226 a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~ 255 (467) .|-.-+|.|+. +++||+|.+-+ T Consensus 175 ~fhEalN~A~~--------~~LPviFv~eN 196 (343) T CHL00149 175 QFFECLNMAVL--------WKLPIIFVVEN 196 (343) T ss_pred HHHHHHHHHHH--------HCCCEEEEEEE T ss_conf 89999999998--------47976899987 No 449 >COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Probab=23.57 E-value=45 Score=13.05 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=50.0 Q ss_pred CCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHH Q ss_conf 31386652210001055565413783476402123333345334663121443114443168745860257888888887 Q gi|254780673|r 278 GLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAA 357 (467) Q Consensus 278 gl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa 357 (467) .-.++.-||-.|++++=++. +..-|+.+++++- |. .-++|...+-+ .+...+-|+ |+.-|+|--..-+-- T Consensus 28 a~i~~Visd~~~A~~lerA~-~~gIpt~~~~~k~-~~------~r~~~d~~l~~-~l~~~~~dl-vvLAGyMrIL~~~fl 97 (200) T COG0299 28 AEIVAVISDKADAYALERAA-KAGIPTVVLDRKE-FP------SREAFDRALVE-ALDEYGPDL-VVLAGYMRILGPEFL 97 (200) T ss_pred CEEEEEEECCCCCHHHHHHH-HCCCCEEEECCCC-CC------CHHHHHHHHHH-HHHHCCCCE-EEECCHHHHCCHHHH T ss_conf 17999995797778999999-8499889744456-78------77899999999-998529999-998664777599999 Q ss_pred HHHHCCCCCEEEEECC-CCCCCC--HHHHHHHH----HHCCCEE-EEECCCC Q ss_conf 5310046752797330-068579--99999999----8719899-9957887 Q gi|254780673|r 358 IELEKNGIDAELIDLR-TIRPMD--WQTIFESV----KKTGRLV-TVEEGYP 401 (467) Q Consensus 358 ~~L~~~gi~~~vid~r-~l~Pld--~~~i~~sv----~kt~~~i-~vee~~~ 401 (467) +.++. .+||++ +|-|.- ..++.+.. +-||.-| .|+|+.- T Consensus 98 ~~~~g-----rIlNIHPSLLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD 144 (200) T COG0299 98 SRFEG-----RILNIHPSLLPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVD 144 (200) T ss_pred HHHHC-----CEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCC T ss_conf 97326-----517417531358999459999998499734757999756777 No 450 >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283 This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm. Probab=23.50 E-value=44 Score=13.12 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=33.0 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCE-EEEECCCCCCCHHHHHHHHHH Q ss_conf 888888887531004675279733006857999999999871989-999578876767899999999 Q gi|254780673|r 349 GMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRL-VTVEEGYPQSSVGSTIANQVQ 414 (467) Q Consensus 349 ~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~-i~vee~~~~gg~g~~i~~~i~ 414 (467) |..-..-.|.+.++.||-+-+|.+=.+ +.+++..-=++=-.- |+-+=-.++-|-..||+..|+ T Consensus 158 ~iGFTkALA~E~A~kGvTVN~i~PGYi---~T~MV~A~redVl~~rIva~IP~~RLg~PeEIA~aV~ 221 (244) T TIGR01829 158 MIGFTKALAQEGARKGVTVNVIAPGYI---ATDMVMAVREDVLQSRIVAQIPVKRLGRPEEIAAAVA 221 (244) T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCC---CCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 567779999721103856754558898---8667786368887405778898321578157888998 No 451 >COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only] Probab=23.37 E-value=29 Score=14.39 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=16.2 Q ss_pred CCCEEEEEECCHHCCCHHHHHHH-CCCCEEEECCCC Q ss_conf 03138665221000105556541-378347640212 Q gi|254780673|r 277 PGLKVVIPYTASDAKGLLKAAIR-DPNPVIFLENEI 311 (467) Q Consensus 277 Pgl~V~~P~~~~d~~~ll~~ai~-~~~Pvi~le~~~ 311 (467) +-|+-++|+...+...-=..+.+ .-+-|+|+|+.. T Consensus 69 ~~l~~ivp~~~f~~t~~ki~~f~ag~GtVLFfeDq~ 104 (200) T COG3560 69 DELRAIVPAEAFEATERKIDSFKAGYGTVLFFEDQN 104 (200) T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHCCCEEEEEECCH T ss_conf 999974566556631034420331564389971643 No 452 >PRK12906 secA preprotein translocase subunit SecA; Reviewed Probab=23.29 E-value=45 Score=13.01 Aligned_cols=61 Identities=15% Similarity=0.279 Sum_probs=39.3 Q ss_pred EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEC Q ss_conf 44316874586025788888888753100467527973300685799999999987198999957 Q gi|254780673|r 334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEE 398 (467) Q Consensus 334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee 398 (467) ....|.-|.|-+ ..+..+...++.|.+.||...|+|.+ ..-.+..|+.-..+-|.+-+... T Consensus 436 ~~~~gqPvLvGT--~SVe~SE~ls~~L~~~gi~h~vLNAk--~~~~EA~IIa~AG~~GaVTIATN 496 (823) T PRK12906 436 RHAKGQPVLVGT--VSIESSERLSQLLDKAGIPHAVLNAK--NHAKEAEIIAQAGQRGAVTIATN 496 (823) T ss_pred HHHCCCCEEEEE--CCHHHHHHHHHHHHHCCCCHHHHCCC--CHHHHHHHHHHCCCCCEEEEECC T ss_conf 986799889971--75899999999999768703530687--75789999983489993897065 No 453 >pfam10740 DUF2529 Protein of unknown function (DUF2529). This family is conserved in the Bacillales. The function is not known. Several members are annotated as being YWJG, a protein expressed downstream of pyrG, a gene encoding for cytidine triphosphate synthetase. Probab=23.22 E-value=46 Score=13.00 Aligned_cols=83 Identities=16% Similarity=-0.006 Sum_probs=50.7 Q ss_pred EECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH--HHHHHHHCCCEEEEECCCCCCCHHHHHHHH Q ss_conf 431687458602578888888875310046752797330068579999--999998719899995788767678999999 Q gi|254780673|r 335 HRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQT--IFESVKKTGRLVTVEEGYPQSSVGSTIANQ 412 (467) Q Consensus 335 ~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~--i~~sv~kt~~~i~vee~~~~gg~g~~i~~~ 412 (467) +.+-+-+.+++-.+.-.++.+.+++|..+||+.-.|....=+.-++.. ..-.--|+.|=++=.|+...-|+=+-+++. T Consensus 79 ~t~tDRVLlfs~~~~d~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~vhId~~l~~~LvP~EdG~Rig~P~~ma~l 158 (172) T pfam10740 79 ITETDRVLLFSRFSNDEEAVALAKKLYDQGIDVVAVSPNAKEGDSLADHADVHIDLKLKRPLVPDEDGTRIGFPSLMAAL 158 (172) T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCEEECCHHHHHH T ss_conf 77557699976999978999999999986998899816888887614440266764778786618889873071799999 Q ss_pred HHHHH Q ss_conf 99967 Q gi|254780673|r 413 VQRKV 417 (467) Q Consensus 413 i~e~~ 417 (467) -.=++ T Consensus 159 y~Y~~ 163 (172) T pfam10740 159 YVYHA 163 (172) T ss_pred HHHHH T ss_conf 99999 No 454 >PRK10446 ribosomal protein S6 modification protein; Provisional Probab=23.21 E-value=46 Score=13.00 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 578888888875310046752797330 Q gi|254780673|r 347 GIGMTYATKAAIELEKNGIDAELIDLR 373 (467) Q Consensus 347 G~~~~~a~~aa~~L~~~gi~~~vid~r 373 (467) -.....|++|++.| |.+.-=||+- T Consensus 227 ~e~~~la~~a~~~l---gl~~~GVDii 250 (300) T PRK10446 227 PQEREIAIKAARTM---ALDVAGVDIL 250 (300) T ss_pred HHHHHHHHHHHHHH---CCCEEEEEEE T ss_conf 99999999999986---9968999998 No 455 >COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism] Probab=23.20 E-value=46 Score=13.00 Aligned_cols=48 Identities=21% Similarity=0.377 Sum_probs=35.3 Q ss_pred CCEEEEHHHHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHH Q ss_conf 745860257888888-887531004675279733006857999999999 Q gi|254780673|r 340 DVTIISFGIGMTYAT-KAAIELEKNGIDAELIDLRTIRPMDWQTIFESV 387 (467) Q Consensus 340 ditii~~G~~~~~a~-~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv 387 (467) ++-++-.|..+...+ +..+.+...||-++|||+..--.+|-+.+++.. T Consensus 48 ~~DvvLlGPQv~y~~~~~~~~~~~~giPV~vI~~~dYG~mnG~kvL~~a 96 (102) T COG1440 48 NADVVLLGPQVRYMLKQLKEAAEEKGIPVEVIDMLDYGMMNGEKVLEQA 96 (102) T ss_pred CCCEEEECHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCHHHHHHH T ss_conf 0898998728998899999984315997678578991576849999999 No 456 >PRK06940 short chain dehydrogenase; Provisional Probab=23.05 E-value=46 Score=12.98 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=19.4 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCC Q ss_conf 7888888887531004675279733006 Q gi|254780673|r 348 IGMTYATKAAIELEKNGIDAELIDLRTI 375 (467) Q Consensus 348 ~~~~~a~~aa~~L~~~gi~~~vid~r~l 375 (467) .........|..|...||.+--|..-++ T Consensus 178 a~~~ltk~lA~e~a~~gIRVN~V~PG~i 205 (277) T PRK06940 178 ANVLRVRAAAVKWGARGARINSISPGII 205 (277) T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCE T ss_conf 9999999999999864965778755767 No 457 >cd00948 FBP_aldolase_I_a Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). This family includes proteins found in vertebrates, plants, and bacterial plant pathogens. Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates. Probab=22.94 E-value=46 Score=12.97 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=13.8 Q ss_pred CHHHHHHHHHHHH-------HCCCCCHHH---HHHHH Q ss_conf 6278998999988-------718864456---66667 Q gi|254780673|r 195 TEHGFAGIGIGAS-------FAGLKPIVE---FMTFN 221 (467) Q Consensus 195 ~E~~~~G~a~G~A-------~~G~~Piv~---~~~~~ 221 (467) |+.++.--|-+|| -+|+-|||| .|..| T Consensus 147 S~~~I~~Na~~LArYA~icQ~~glVPIVEPEVLmdG~ 183 (330) T cd00948 147 SELAIKENAHGLARYAAICQENGLVPIVEPEVLMDGD 183 (330) T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 6999999899999999999985981321501001676 No 458 >PRK13685 hypothetical protein; Provisional Probab=22.83 E-value=46 Score=12.95 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=29.3 Q ss_pred HHHHHHHHHCCCCCEEEEECC------------CCCCCCHHHHHHHHHHCCCE-EEEEC Q ss_conf 888875310046752797330------------06857999999999871989-99957 Q gi|254780673|r 353 ATKAAIELEKNGIDAELIDLR------------TIRPMDWQTIFESVKKTGRL-VTVEE 398 (467) Q Consensus 353 a~~aa~~L~~~gi~~~vid~r------------~l~Pld~~~i~~sv~kt~~~-i~vee 398 (467) +++||+..+++||.+-.|-+- ...|+|++++.+..+.||-- ....+ T Consensus 217 ~~~AA~~A~~~gi~IyTIgvGt~~g~~~~~g~~~~~~lDe~~L~~IA~~TGG~yfrA~d 275 (326) T PRK13685 217 AYTAARTAKDQGVPISTISFGTPYGFVEINGQRQPVPVDDETLKKIAQLSGGEFYTAAS 275 (326) T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCC T ss_conf 99999999985994899997799884354784034568999999999972987997199 No 459 >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated Probab=22.80 E-value=46 Score=12.95 Aligned_cols=48 Identities=17% Similarity=0.347 Sum_probs=29.0 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC-CCEECCCCC Q ss_conf 122355443113650699932434458866532364754081-110116666 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGC-ERVIDTPIT 195 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~-~R~~d~pi~ 195 (467) |+..++...++....+ +...++ |||.+..-..++.+||= -+++|.--. T Consensus 91 Ais~~ll~ll~~Gdhi-v~~~~~--YggT~~l~~~~l~~~Gi~v~~vD~~d~ 139 (431) T PRK08248 91 AVTYSILNIASAGDEI-VSSSSL--YGGTYNLFAHTLPKLGITVKFVDPSDP 139 (431) T ss_pred HHHHHHHHHHCCCCEE-EECCCC--CCCHHHHHHHHHHCCCEEEEEECCCCH T ss_conf 9999999973779989-972786--488899987423238879999899775 No 460 >pfam11793 FANCL_C FANCL C-terminal domain. This domain is found at the C-terminus of the Fancl protein in humans which is the putative E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nuclear complex which is required for mono-ubiquitination of a downstream FA protein, FANCD2. Probab=22.79 E-value=44 Score=13.15 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=17.8 Q ss_pred CHHHHHHHHHHHHHHCCCEEE Q ss_conf 444332168876322031386 Q gi|254780673|r 262 AAQHSQCYAAWYSHVPGLKVV 282 (467) Q Consensus 262 g~~Hs~~~~~~~~~iPgl~V~ 282 (467) -++|+..+.-||+++|+.+.. T Consensus 30 ~~FH~~CL~eWl~slp~sr~s 50 (70) T pfam11793 30 LPFHIACLYEWLRTLRDSRQS 50 (70) T ss_pred CHHHHHHHHHHHHHCCCCEEE T ss_conf 687999999999848640067 No 461 >PRK07608 hypothetical protein; Provisional Probab=22.79 E-value=46 Score=12.95 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=18.5 Q ss_pred EEEECCCCCCCCHHHHHHHHHHCCCEEEEEC----CCCCCCHHHHHH Q ss_conf 7973300685799999999987198999957----887676789999 Q gi|254780673|r 368 ELIDLRTIRPMDWQTIFESVKKTGRLVTVEE----GYPQSSVGSTIA 410 (467) Q Consensus 368 ~vid~r~l~Pld~~~i~~sv~kt~~~i~vee----~~~~gg~g~~i~ 410 (467) ++++-+...|+........ ..+|++.+=| ..+.+|-|.-.+ T Consensus 260 ~~~~~~~~~~l~~~~a~~~--~~~rv~LiGDAAH~~~P~~GQG~N~g 304 (389) T PRK07608 260 RCVTPAAGFPLALQRVDRL--VAPRVALVGDAAHLIHPLAGQGMNLG 304 (389) T ss_pred EEECCCCCCCHHHHHHHHH--HCCCEEEECCHHCCCCCCCCCCHHHH T ss_conf 5642443440765525664--12652565140205796403338688 No 462 >pfam01333 Apocytochr_F_C Apocytochrome F, C-terminal. This is a sub-family of cytochrome C. See pfam00034. Probab=22.69 E-value=47 Score=12.93 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=10.2 Q ss_pred EECCCCCEEEEEEECC Q ss_conf 3177786898998237 Q gi|254780673|r 48 VESIDEGILGKILCPN 63 (467) Q Consensus 48 V~A~~~G~i~~ilv~e 63 (467) +.|+.+|+|.+|...+ T Consensus 5 ~~as~~G~I~~I~~~e 20 (118) T pfam01333 5 YNASAAGTITKITRNE 20 (118) T ss_pred EECCCCEEEEEEEECC T ss_conf 7166770899977567 No 463 >pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Probab=22.65 E-value=47 Score=12.93 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=22.6 Q ss_pred CEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEC--CCCCCCCHH Q ss_conf 45860257888888887531004675279733--006857999 Q gi|254780673|r 341 VTIISFGIGMTYATKAAIELEKNGIDAELIDL--RTIRPMDWQ 381 (467) Q Consensus 341 itii~~G~~~~~a~~aa~~L~~~gi~~~vid~--r~l~Pld~~ 381 (467) ++||+-|. .++|.|..|.+.|.++++|+. |.+..+|.+ T Consensus 2 v~iiGgG~---ig~E~A~~l~~~G~~Vtiie~~~~~l~~~d~~ 41 (82) T pfam00070 2 VVVVGGGY---IGLEFASALAKLGSKVTVVERRDRLLRGFDEE 41 (82) T ss_pred EEEECCCH---HHHHHHHHHHHCCCEEEEECCCCCCCHHCCHH T ss_conf 99999889---99999999986392789981257330227988 No 464 >cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Probab=22.52 E-value=47 Score=12.91 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=19.1 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 78888888875310046752797330 Q gi|254780673|r 348 IGMTYATKAAIELEKNGIDAELIDLR 373 (467) Q Consensus 348 ~~~~~a~~aa~~L~~~gi~~~vid~r 373 (467) .+-..+..||+.|.+.|+...|.|+. T Consensus 80 ~~G~rS~~Aa~~L~~~G~~~~V~~l~ 105 (122) T cd01526 80 RRGNDSQTAVRKLKELGLERFVRDII 105 (122) T ss_pred CCCCHHHHHHHHHHHCCCCCCEEECC T ss_conf 99965999999999819986478764 No 465 >cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined. Probab=22.51 E-value=37 Score=13.60 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=25.1 Q ss_pred CCEEEEHHH-HHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 745860257-88888888753100467527973300 Q gi|254780673|r 340 DVTIISFGI-GMTYATKAAIELEKNGIDAELIDLRT 374 (467) Q Consensus 340 ditii~~G~-~~~~a~~aa~~L~~~gi~~~vid~r~ 374 (467) |+.||++|. +.....+..+.|.+.||.+|+-|-.. T Consensus 54 eilliGtG~~~~~~~~~~~~~l~~~gI~~E~M~T~a 89 (109) T cd00248 54 DILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGA 89 (109) T ss_pred CEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECHHH T ss_conf 489986589777899999999998799499967099 No 466 >pfam02196 RBD Raf-like Ras-binding domain. Probab=22.46 E-value=30 Score=14.25 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCC---CCCCCHHHHHHHHHHCCCEEEEE Q ss_conf 25788888888753100467527973300---68579999999998719899995 Q gi|254780673|r 346 FGIGMTYATKAAIELEKNGIDAELIDLRT---IRPMDWQTIFESVKKTGRLVTVE 397 (467) Q Consensus 346 ~G~~~~~a~~aa~~L~~~gi~~~vid~r~---l~Pld~~~i~~sv~kt~~~i~ve 397 (467) -|-.+.+++.- .+++.|++.+-.+++. -+|+||++-..++. ++=+.+| T Consensus 19 pG~tird~L~~--~l~~rgL~~~~~~v~~~g~~k~l~~d~d~s~L~--~~El~vE 69 (71) T pfam02196 19 PGMSVRDALSK--ALKRRGLNPSECVVRRSGEKKPLDLDTDISSLP--GEELVVE 69 (71) T ss_pred CCCCHHHHHHH--HHHHCCCCHHHEEEEECCCCCCCCCCCCCCCCC--CCEEEEE T ss_conf 99789999999--999849998998999058984221566224001--8789999 No 467 >PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional Probab=22.33 E-value=47 Score=12.89 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=33.6 Q ss_pred CCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCHHHHHHHHHH--CCCEE--EEECCCCC-CCHHHHHH Q ss_conf 16874586025788888888753100467527973300685-799999999987--19899--99578876-76789999 Q gi|254780673|r 337 QGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRP-MDWQTIFESVKK--TGRLV--TVEEGYPQ-SSVGSTIA 410 (467) Q Consensus 337 ~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~P-ld~~~i~~sv~k--t~~~i--~vee~~~~-gg~g~~i~ 410 (467) ++..|.|++.|.+.+.--- .+.| .|+| ||.. +++.+.. ...|. +.+|-... |.=|.||. T Consensus 169 ~d~RV~vigsGGLSH~~~~-----p~~g---------~in~~~D~~-~ld~l~~gd~~~l~~~~~~e~~~~aG~gg~Ei~ 233 (269) T PRK13358 169 DDERVVVVGTGGLSHWINT-----PRHG---------EVNEAFDHR-VMGALCSGDLAALQAMGDEYILDNGGNGGLEIV 233 (269) T ss_pred CCCCEEEEECCCCCCCCCC-----CCCC---------CCCHHHHHH-HHHHHHHCCHHHHHCCCHHHHHHHCCCCCHHHH T ss_conf 8871899957875568898-----6667---------579999999-999997099999861799999987588409999 Q ss_pred HHHHHHH Q ss_conf 9999967 Q gi|254780673|r 411 NQVQRKV 417 (467) Q Consensus 411 ~~i~e~~ 417 (467) .||.-.+ T Consensus 234 ~Wi~a~g 240 (269) T PRK13358 234 NWIMAAA 240 (269) T ss_pred HHHHHHH T ss_conf 9999998 No 468 >PRK11678 putative chaperone; Provisional Probab=22.30 E-value=47 Score=12.88 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=12.6 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCC Q ss_conf 667656089989999999998502 Q gi|254780673|r 439 ANLEKLALPNVDEIIESVESICYK 462 (467) Q Consensus 439 ~~le~~~~p~~~~I~~av~~v~~~ 462 (467) ..+|...-|..++|.+.+++++.+ T Consensus 372 ~~fe~~i~~~l~r~~~~~~~~L~~ 395 (450) T PRK11678 372 QGLEEAISQPLARILELVQLALDQ 395 (450) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999997 No 469 >PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Probab=22.17 E-value=48 Score=12.87 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=22.9 Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHH-----HCCCCEEEECC Q ss_conf 788879983024457644443321688763220313866522100010555654-----13783476402 Q gi|254780673|r 245 ITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAI-----RDPNPVIFLEN 309 (467) Q Consensus 245 ~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai-----~~~~Pvi~le~ 309 (467) +..|++++...|++++ ||+++. ++.|+...+..+- ...++.+|+|. T Consensus 151 iGyPvliKAa~GGGGr-----------------Gmriv~--~~~el~~~~~~~~~eA~~~Fg~~~v~iEk 201 (449) T PRK06111 151 IGYPVMLKASAGGGGI-----------------GMQLVE--TEQELTKAFESNKKRAANFFGNGEMYLEK 201 (449) T ss_pred CCCCEEEEECCCCCCC-----------------CEEEEC--CHHHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 5980266203589867-----------------208957--99999999999999999863996025544 No 470 >pfam06418 CTP_synth_N CTP synthase N-terminus. This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyses the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position. Probab=22.17 E-value=48 Score=12.87 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=34.6 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC----CCEEEEECC Q ss_conf 888887531004675279733006857999999999871----989999578 Q gi|254780673|r 352 YATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKT----GRLVTVEEG 399 (467) Q Consensus 352 ~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt----~~~i~vee~ 399 (467) -.....+.|..-||.+++|-+|+=+|++.+...+...-| .+++.+.+- T Consensus 189 PTQhSVkeLrs~GIqPDilvcRse~~l~~~~k~KIslfcnV~~~~VI~~~Dv 240 (275) T pfam06418 189 PTQHSVKELRSIGIQPDILVCRSEKPLDEETKEKIALFCNVPKEAVISAPDV 240 (275) T ss_pred CHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEECCC T ss_conf 3288899999648998758870678999999999987639986678984684 No 471 >PRK07671 cystathionine beta-lyase; Provisional Probab=22.14 E-value=48 Score=12.86 Aligned_cols=45 Identities=31% Similarity=0.598 Sum_probs=26.0 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCC Q ss_conf 1223554431136506999324344588665323647540811-101166 Q gi|254780673|r 145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTP 193 (467) Q Consensus 145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~p 193 (467) |+...+ ..++.. +-++...++ |||.+..-..++.+||=+ +++|.. T Consensus 77 Ai~a~l-~~~~~G-d~iv~~~~~--YggT~~l~~~~l~~~Gi~v~fvd~~ 122 (377) T PRK07671 77 AITAVM-MLFSSG-DHVILTDDV--YGGTYRVMTKVLNRFGIEHTFVDTT 122 (377) T ss_pred HHHHHH-HHHCCC-CEEEECCCC--CCCHHHHHHHHHHHCCCEEEEECCC T ss_conf 999999-986899-989982898--2778999998886369769994388 No 472 >TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit; InterPro: IPR012756 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription. Probab=22.12 E-value=28 Score=14.49 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=6.0 Q ss_pred EEEECCCCCEECCCCEE Q ss_conf 87741789762589859 Q gi|254780673|r 20 AKWKKNEGDLIKQGDII 36 (467) Q Consensus 20 ~~W~vk~GD~V~~gd~l 36 (467) ++..++.||.|..|++| T Consensus 860 T~L~v~dgd~i~pG~V~ 876 (1252) T TIGR02388 860 TSLLVKDGDLIKPGAVV 876 (1252) T ss_pred EEEEECCCCEECCCCEE T ss_conf 57884168761677558 No 473 >pfam12588 PSDC Phophatidylserine decarboxylase. This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam02666. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes. Probab=22.10 E-value=48 Score=12.86 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=19.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCE--EEEEECCCCCCC Q ss_conf 78999999999878867421177678887--998302445764 Q gi|254780673|r 221 NFAMQAIDQIINSAAKTRYMSGGQITTSI--VFRGPNGAAARV 261 (467) Q Consensus 221 ~f~~~a~dqi~n~~ak~~~~~gg~~~~p~--v~r~p~G~~~~~ 261 (467) +=+++.+|.|+..|-.+.---.|...+|+ ++--|+|.-.|+ T Consensus 47 ~~mL~~ln~i~t~AP~~~~~~~glVG~P~nalldwpM~T~sG~ 89 (140) T pfam12588 47 DELLQLLNHILTTAPEWNDHPSGLVGFPINALLDWPMGTPSGY 89 (140) T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHH T ss_conf 9999999999731999777888740367176420335776789 No 474 >TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase; InterPro: IPR013447 Proteins in this entry match the enzyme RhaD, rhamnulose-1-phosphate aldolase (4.1.2.19 from EC).; GO: 0008994 rhamnulose-1-phosphate aldolase activity. Probab=22.09 E-value=48 Score=12.85 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=0.0 Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCC Q ss_conf 2235544311365069993243445886653236475408 Q gi|254780673|r 146 LRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFG 185 (467) Q Consensus 146 ~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg 185 (467) |.++-+|.|+.+.=| |.++.|+|+.-.-|-+-|| T Consensus 193 IG~~TAekM~e~rLv------~WP~HGifGaG~~lDe~FG 226 (273) T TIGR02624 193 IGEATAEKMKEYRLV------LWPHHGIFGAGPSLDETFG 226 (273) T ss_pred HHHHHHHHHHHCCEE------EECCCCEECCCCCHHHHCC T ss_conf 678999987318788------8448773037876334406 No 475 >PRK08462 biotin carboxylase; Validated Probab=21.99 E-value=48 Score=12.84 Aligned_cols=76 Identities=24% Similarity=0.397 Sum_probs=0.0 Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH-----CCCCEEEECCCCCCCCCCC Q ss_conf 67888799830244576444433216887632203138665221000105556541-----3783476402123333345 Q gi|254780673|r 244 QITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR-----DPNPVIFLENEILYGSSFE 318 (467) Q Consensus 244 ~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~-----~~~Pvi~le~~~ly~~~~~ 318 (467) .+.-||+++...|+|++ ||+|+. +..|++..+..+-+ ..++-+|+|.-+.-.+..+ T Consensus 152 ~iGyPV~lKas~GGGGr-----------------Gmriv~--~~~el~~~~~~a~~ea~~~fg~~~v~vEk~i~~~rHIE 212 (446) T PRK08462 152 EIGYPVILKAAAGGGGR-----------------GMRVVE--DESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIE 212 (446) T ss_pred HHCCCEEEEECCCCCCC-----------------EEEEEC--CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEE T ss_conf 72995687632789987-----------------428957--67999999999987788605888669998503550789 Q ss_pred CCCCCCEECCCCCEEEEECCC-CCEE Q ss_conf 334663121443114443168-7458 Q gi|254780673|r 319 VPMVDDLVIPIGRARIHRQGS-DVTI 343 (467) Q Consensus 319 ~p~~~~~~~p~Gk~~i~~~G~-diti 343 (467) +.-..| +.++++.-|+ |++| T Consensus 213 vQvl~D-----~~Gn~ihl~eRdCSi 233 (446) T PRK08462 213 VQILGD-----KHGNVIHVGERDCSM 233 (446) T ss_pred EEEEEC-----CCCCEEEEECCCCCC T ss_conf 998852-----899888853212366 No 476 >PRK08776 cystathionine gamma-synthase; Provisional Probab=21.94 E-value=48 Score=12.83 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=0.0 Q ss_pred EEECCCCCEE--EEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE Q ss_conf 4431687458--602578888888875310046752797330068579999999998719899995 Q gi|254780673|r 334 IHRQGSDVTI--ISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVE 397 (467) Q Consensus 334 i~~~G~diti--i~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~ve 397 (467) +++.|+.+-+ -.||.+.... .+.+.+-||.+..+|+. |.+.+.+.+++--|+|.+| T Consensus 95 ll~~GDhiv~~~~~YGgT~~l~---~~~~~~~gi~~~~vd~~-----d~~~~~~~i~~~Tklv~~E 152 (405) T PRK08776 95 LLQPGDTLVVPHDAYGGSWRLF---NALAKKGHFALITADLT-----DPRSLADALAQSPKLVLIE 152 (405) T ss_pred HHCCCCEEEECCCCCHHHHHHH---HHHHHHCCEEEEEECCC-----CHHHHHHHCCCCCEEEEEE T ss_conf 7389998998688611799999---99875488899996899-----9899997437776599998 No 477 >PRK01506 consensus Probab=21.82 E-value=49 Score=12.82 Aligned_cols=148 Identities=19% Similarity=0.238 Sum_probs=0.0 Q ss_pred CCCCCCCCEECCCCCEEEEECC-CCCEEEEHH-HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC-E Q ss_conf 4533466312144311444316-874586025-788888888753100467527973300685799999999987198-9 Q gi|254780673|r 317 FEVPMVDDLVIPIGRARIHRQG-SDVTIISFG-IGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR-L 393 (467) Q Consensus 317 ~~~p~~~~~~~p~Gk~~i~~~G-~ditii~~G-~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~-~ 393 (467) |++|-.+-+..|+-...+..++ ++..|++-- ..+.+|...++.| |....+++-|-.+|=..+.....-.=-|| + T Consensus 144 F~ip~~~l~~~~~l~~~~~~~~~~~~vVVsPD~Ga~kra~~~a~~L---~~~~~~~~K~R~~~~~v~~~~~~gdV~Gr~v 220 (317) T PRK01506 144 FDIPIDHLMGVPILSDYFETKGLKDIVIVSPDHGGVTRARKMADRL---KAPIAIIDKRRPRPNVAEVMNIIGNIEGKTA 220 (317) T ss_pred CCCCCCEEEECHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHC---CCCEEEEEEECCCCCEEEEECCCCCCCCCEE T ss_conf 6998431585088888998548877489904924899999999972---9966889864179980463024565579627 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH------------------HHHCCCCCEEECCCC-CCCCCCHHHHHHCCCCHHHHH- Q ss_conf 999578876767899999999967------------------764289829971777-888889667656089989999- Q gi|254780673|r 394 VTVEEGYPQSSVGSTIANQVQRKV------------------FDYLDAPILTITGRD-VPMPYAANLEKLALPNVDEII- 453 (467) Q Consensus 394 i~vee~~~~gg~g~~i~~~i~e~~------------------f~~L~~p~~ri~~~d-~p~P~~~~le~~~~p~~~~I~- 453 (467) |+||+=..+||-=...+..+.+++ -..-++++.+|-.-| +|.|-....+|....+...++ T Consensus 221 IIVDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~TnTip~p~~~~~~kl~vlsva~llA 300 (317) T PRK01506 221 ILIDDIIDTAGTITLAANALVENGASEVYACCTHPVLSGPAIERIQNSKIKELVVTNSIVLPEEKKIDKVHELSVAPLIA 300 (317) T ss_pred EEECCHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHCCCCCEEEEHHHHHH T ss_conf 87513221350599999999865997589999770068179999861899889993884486123379839988499999 Q ss_pred HHHHHHHCCCCCCC Q ss_conf 99999850200269 Q gi|254780673|r 454 ESVESICYKRKAKS 467 (467) Q Consensus 454 ~av~~v~~~~~~~~ 467 (467) ++++++....-.++ T Consensus 301 eaI~ri~~~~Sis~ 314 (317) T PRK01506 301 EAIIRVYEEESVSV 314 (317) T ss_pred HHHHHHHCCCCHHH T ss_conf 99999867997688 No 478 >TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate. Probab=21.81 E-value=49 Score=12.82 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=0.0 Q ss_pred CCCCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCC Q ss_conf 00000000000122355443-11365069993243 Q gi|254780673|r 134 HAPTSSITVREALRDAIAEE-MRRDKDVFIMGEEV 167 (467) Q Consensus 134 ~~~~~~~TvRea~~~a~~e~-m~~d~~~~~~gedv 167 (467) .+|......||++..+|+-. ...+.++|++|+.| T Consensus 8 ~aP~gs~~~rE~LD~aLa~aaf~q~vsv~F~~dGV 42 (116) T TIGR03010 8 QAPHGTASGREGLDALLAASAFDEDIGVFFIDDGV 42 (116) T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH T ss_conf 79998778999999999998707974799952449 No 479 >PRK08133 O-succinylhomoserine sulfhydrylase; Validated Probab=21.63 E-value=49 Score=12.79 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=0.0 Q ss_pred EEECCCCCEE--EEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE Q ss_conf 4431687458--602578888888875310046752797330068579999999998719899995 Q gi|254780673|r 334 IHRQGSDVTI--ISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVE 397 (467) Q Consensus 334 i~~~G~diti--i~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~ve 397 (467) +++.|+.|-. -.||.+.....+-...+ ||.++.+| |-|.+.+.+.+++.-++|.+| T Consensus 96 ~l~~Gd~iv~~~~~Yggt~~l~~~~l~~~---Gi~~~~vd-----~~d~~~~~~ai~~~T~lv~~E 153 (391) T PRK08133 96 LLQAGDHVVSSRSLFGSTLSLFEKIFARF---GIETTFVD-----LTDLDAWRAAVRPNTKLFFLE 153 (391) T ss_pred HCCCCCEEEECCCCCCCHHHHHHHHHHCC---CEEEEECC-----CCCHHHHHHHCCCCCEEEEEE T ss_conf 45799989967897453899999874107---84444679-----879999997458784599997 No 480 >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Probab=21.61 E-value=49 Score=12.79 Aligned_cols=38 Identities=29% Similarity=0.610 Sum_probs=0.0 Q ss_pred CCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECC--CCCCCC Q ss_conf 87458602578888888875310046752797330--068579 Q gi|254780673|r 339 SDVTIISFGIGMTYATKAAIELEKNGIDAELIDLR--TIRPMD 379 (467) Q Consensus 339 ~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r--~l~Pld 379 (467) .||.||+-|. .-+-+|-.|.+.|+++.|||-+ .++|++ T Consensus 3 ~DV~IvGaGp---vGl~lAl~L~~~G~~v~lie~~~~~~~~~~ 42 (405) T PRK05714 3 ADLLIVGAGM---VGSALALALEGSGLEVLLVDGGPLSVKPFD 42 (405) T ss_pred CCEEEECCCH---HHHHHHHHHHCCCCCEEEEECCCCCCCCCC T ss_conf 8899999059---999999999618997899958997778776 No 481 >PRK10569 NAD(P)H-dependent FMN reductase; Provisional Probab=21.45 E-value=49 Score=12.77 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC----------CHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 57888888887531004675279733006857----------99999999987198999957887676789999999996 Q gi|254780673|r 347 GIGMTYATKAAIELEKNGIDAELIDLRTIRPM----------DWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRK 416 (467) Q Consensus 347 G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pl----------d~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~ 416 (467) +.+...+..+++.|.+.|++++.||++-+-|- +.....+.+...--+|+.---++ +++..-+ ++ T Consensus 14 SrT~~L~~~v~~~L~~~g~ev~~i~l~dl~~~~ll~~~~~~p~v~~~~~~V~~AD~lIVaTPVYk-aSysGlL-----K~ 87 (191) T PRK10569 14 SRSSVLLEYAREWLQGLDVEVYHWNLQDFAAEDLLYARFDSPAVKTFTEQLQQADGLIVATPVYK-ASFSGAL-----KT 87 (191) T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCEEEEECCEEC-CCCCHHH-----HH T ss_conf 74999999999999866985899863316806540167899899999999985897999676013-6452899-----99 Q ss_pred HHHHCC Q ss_conf 776428 Q gi|254780673|r 417 VFDYLD 422 (467) Q Consensus 417 ~f~~L~ 422 (467) .||+|+ T Consensus 88 flDll~ 93 (191) T PRK10569 88 LLDLLP 93 (191) T ss_pred HHHHCC T ss_conf 998569 No 482 >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated Probab=21.36 E-value=50 Score=12.75 Aligned_cols=66 Identities=12% Similarity=0.209 Sum_probs=0.0 Q ss_pred EEECCCCCEEEE--HHHHHHHHHHHHHHHHCCCCCEEEEEC-------------------------CCCCCCCHHHHHHH Q ss_conf 443168745860--257888888887531004675279733-------------------------00685799999999 Q gi|254780673|r 334 IHRQGSDVTIIS--FGIGMTYATKAAIELEKNGIDAELIDL-------------------------RTIRPMDWQTIFES 386 (467) Q Consensus 334 i~~~G~ditii~--~G~~~~~a~~aa~~L~~~gi~~~vid~-------------------------r~l~Pld~~~i~~s 386 (467) +++.|+.+.+.. ||.+.....+....+ ||.++.+|. -++.=.|.+.|.+. T Consensus 104 ll~~Gdhiv~~~~lYggT~~l~~~~l~~~---GI~~~fvd~~~d~~~~~~~i~~~Tklv~~EtpsNP~l~v~Di~~ia~i 180 (437) T PRK05613 104 LAGAGDHIVTSPRLYGGTETLFLVTLNRL---GIETTFVENPDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEV 180 (437) T ss_pred HHCCCCEEEECCCCCCCHHHHHHHHHHHC---CCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHH T ss_conf 72889989978987634789977677516---815899479999999997378785599998799986533579999999 Q ss_pred HHHCCCEEEEECCCCC Q ss_conf 9871989999578876 Q gi|254780673|r 387 VKKTGRLVTVEEGYPQ 402 (467) Q Consensus 387 v~kt~~~i~vee~~~~ 402 (467) +++.+-+++||..|-+ T Consensus 181 A~~~g~~~vVDNTfat 196 (437) T PRK05613 181 AHRNQVPLIIDNTIAT 196 (437) T ss_pred HHHCCCEEEECCCCCC T ss_conf 9876983995166520 No 483 >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Probab=21.28 E-value=50 Score=12.74 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=0.0 Q ss_pred CCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 74586025788888888753100467527973 Q gi|254780673|r 340 DVTIISFGIGMTYATKAAIELEKNGIDAELID 371 (467) Q Consensus 340 ditii~~G~~~~~a~~aa~~L~~~gi~~~vid 371 (467) ||.||+.|. .-+-+|-.|.+.|+++.||| T Consensus 19 DV~IVGaGp---~Gl~lAl~La~~Gi~v~viE 47 (413) T PRK07364 19 DVVIVGGGI---VGLTLAAALKDSGLRIALIE 47 (413) T ss_pred CEEEECCCH---HHHHHHHHHHHCCCCEEEEE T ss_conf 989999279---99999999986899889991 No 484 >pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Probab=21.25 E-value=50 Score=12.74 Aligned_cols=43 Identities=23% Similarity=0.207 Sum_probs=0.0 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHH Q ss_conf 76789999999996776428982997177788888966765608998999 Q gi|254780673|r 403 SSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEI 452 (467) Q Consensus 403 gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I 452 (467) ||+|++++..+..-+ +.++..-|--.=.-.+|-++++.+.++| T Consensus 10 GglG~~~~~~La~~G-------vg~i~lvD~D~ve~sNL~Rq~l~~~~di 52 (134) T pfam00899 10 GGLGSPAAEYLARAG-------VGKLTLVDFDTVELSNLNRQILFTESDI 52 (134) T ss_pred CHHHHHHHHHHHHHC-------CCEEEEEECCCCCCCCCCCEEECCHHHC T ss_conf 889999999999938-------9749999895676322272242336466 No 485 >PRK07349 amidophosphoribosyltransferase; Provisional Probab=21.08 E-value=50 Score=12.72 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=0.0 Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCC--CCCCCCHHHHHHCCCCHHHHHHH Q ss_conf 9999871989999578876767899999999967764289829971777--88888966765608998999999 Q gi|254780673|r 384 FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRD--VPMPYAANLEKLALPNVDEIIES 455 (467) Q Consensus 384 ~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d--~p~P~~~~le~~~~p~~~~I~~a 455 (467) ++++-+-+|+|+||++...|--...|...+-+.+ -+.--.|+++|. .|+.|+-+ .|+.++++.+ T Consensus 366 ~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aG---AkeVh~riasPpi~~pC~yGID-----~pt~~eLIA~ 431 (495) T PRK07349 366 LKDVLAGKRIIIVDDSIVRGTTSRKIVKALRDAG---ATEVHMRISSPPVTHPCFYGID-----TDTQDQLIAA 431 (495) T ss_pred CHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCC---CCEEEEEECCCCCCCCCCCCCC-----CCCHHHHHHC T ss_conf 6788589859998266055746999999999769---9889999689985777757557-----8997999757 No 486 >pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. Probab=21.05 E-value=50 Score=12.71 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=0.0 Q ss_pred HHHHHHHHHCCCCCEEEEEC Q ss_conf 22355443113650699932 Q gi|254780673|r 146 LRDAIAEEMRRDKDVFIMGE 165 (467) Q Consensus 146 ~~~a~~e~m~~d~~~~~~ge 165 (467) +.+++...|+.||+++++|| T Consensus 198 ~~~ll~~~LR~~PD~IivGE 217 (283) T pfam00437 198 FADLLRAALRQRPDRIMVGE 217 (283) T ss_pred HHHHHHHHHCCCCCEEEECC T ss_conf 99999996388999897578 No 487 >TIGR01704 MTA/SAH-Nsdase MTA/SAH nucleosidase; InterPro: IPR010049 This entry represents the enzyme 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase which acts on its two substrates at the same active site. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulphur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria , ,]. This enzyme is widely distributed in bacteria. ; GO: 0008782 adenosylhomocysteine nucleosidase activity, 0008930 methylthioadenosine nucleosidase activity, 0009164 nucleoside catabolic process, 0019509 methionine salvage. Probab=20.91 E-value=42 Score=13.22 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=0.0 Q ss_pred HHHHCCCCCEECCC Q ss_conf 47540811101166 Q gi|254780673|r 180 LLQEFGCERVIDTP 193 (467) Q Consensus 180 l~~~fg~~R~~d~p 193 (467) |+++|.|+-+|||| T Consensus 61 LL~~~KPD~~INTG 74 (229) T TIGR01704 61 LLDRYKPDVVINTG 74 (229) T ss_pred HHHCCCCCEEEECC T ss_conf 87507997698588 No 488 >TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process. Probab=20.84 E-value=51 Score=12.68 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=0.0 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHH Q ss_conf 8887531004675279733006857999999999 Q gi|254780673|r 354 TKAAIELEKNGIDAELIDLRTIRPMDWQTIFESV 387 (467) Q Consensus 354 ~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv 387 (467) ..+-+.|.+-||.+++|=+||=.||+.++..|.+ T Consensus 201 QhSVKeLRs~Gi~PD~i~cRs~~~l~~~~k~KiA 234 (571) T TIGR00337 201 QHSVKELRSLGIQPDIIICRSSEPLDKSLKKKIA 234 (571) T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHH T ss_conf 2789999860988868998188768977764521 No 489 >PRK12438 hypothetical protein; Provisional Probab=20.79 E-value=51 Score=12.68 Aligned_cols=99 Identities=8% Similarity=-0.000 Sum_probs=0.0 Q ss_pred EEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 89899823788513269758999437777211222233212344222332233322233221000000112333310000 Q gi|254780673|r 55 ILGKILCPNGTKNVKVNTPIAAILQEGETALDIDKMLLEKPDVAISPSSKNTTLVFSNEDNDKVDHQKSKNDIQDSSFAH 134 (467) Q Consensus 55 ~i~~ilv~eG~e~V~VG~~ia~i~~ege~a~~~~~~~a~~~~aa~aaa~~~~s~~~~~a~~~a~~~~~a~~~~~~~~~~~ 134 (467) .|++++|.=.++.-.-|.-|+.=.+-.++....=.....+.+.+.........++....+++.....++....++..++. T Consensus 862 ~L~rViVay~~~~~~~Gd~v~~~~TL~eAL~~vFgg~sg~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (979) T PRK12438 862 QLSRVLVSVREPRTEGGVRVGYAPTLAESLDQVFGPGTGRVATAPGGDAASAPPPGAGGPAPPQAVPPPRTTQPPAAPPR 941 (979) T ss_pred EEEEEEEEEECCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 00067888421566778748750119999999748897654578887778899987889998767899998777788988 Q ss_pred CCCCCHHHHHHHHHHHHHH Q ss_conf 0000000000122355443 Q gi|254780673|r 135 APTSSITVREALRDAIAEE 153 (467) Q Consensus 135 ~~~~~~TvRea~~~a~~e~ 153 (467) .+.....--.++++|++.. T Consensus 942 ~~~~~~~~~~~~~~~~~~~ 960 (979) T PRK12438 942 GPDVPPATVAELRETLADL 960 (979) T ss_pred CCCCCCHHHHHHHHHHHHH T ss_conf 8787623389999999999 No 490 >pfam10011 DUF2254 Predicted membrane protein (DUF2254). Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined. Probab=20.78 E-value=51 Score=12.67 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=0.0 Q ss_pred CEEEEEEEECCCCCEECCCCEEEEE Q ss_conf 1578987741789762589859999 Q gi|254780673|r 15 TEGNIAKWKKNEGDLIKQGDIIYEV 39 (467) Q Consensus 15 ~eG~i~~W~vk~GD~V~~gd~l~ei 39 (467) +.+......+.+||.|-+|++|+.+ T Consensus 219 ~~d~~i~l~~~pG~fV~~g~pl~~v 243 (369) T pfam10011 219 EHDGVIYLLVRPGDFVTPGTPLARV 243 (369) T ss_pred HCCCEEEEEECCCCEECCCCEEEEE T ss_conf 8797899982798736899769998 No 491 >PRK08861 cystathionine gamma-synthase; Provisional Probab=20.66 E-value=51 Score=12.66 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=0.0 Q ss_pred EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE Q ss_conf 4431687458602578888888875310046752797330068579999999998719899995 Q gi|254780673|r 334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVE 397 (467) Q Consensus 334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~ve 397 (467) .++.|+.+.+-..-+.-...+- ...|.+.||+++.+| +-|.+.+.+.+.+.-|+|.+| T Consensus 88 ll~~Gd~iv~~~~~Yg~T~~l~-~~~l~~~gi~~~~~d-----~~d~~~~~~~i~~~Tkli~~E 145 (388) T PRK08861 88 LLGPDDLIVAPHDCYGGTYRLF-NTRANKGDFKVLFVD-----QSDAAALDAALAKKPKLILLE 145 (388) T ss_pred HCCCCCEEEECCCCCCCHHHHH-HHHHHHCCEEEEEEC-----CCCCHHHHHHCCCCCEEEEEE T ss_conf 3689998998689855068999-989862886999989-----998278997348785399984 No 492 >cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available. Probab=20.65 E-value=45 Score=13.04 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=0.0 Q ss_pred CCEEEEHHH-HHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 745860257-88888888753100467527973 Q gi|254780673|r 340 DVTIISFGI-GMTYATKAAIELEKNGIDAELID 371 (467) Q Consensus 340 ditii~~G~-~~~~a~~aa~~L~~~gi~~~vid 371 (467) |+.++++|. ......+..+.|.+.||.+|+.| T Consensus 56 eilliGtG~~~~~~~~~~~~~l~~~gI~vE~M~ 88 (114) T cd05125 56 EILVIGTGRKSRPLSPELRKYFKKLGIAVEVVD 88 (114) T ss_pred CEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEC T ss_conf 999986699877899999999997599179958 No 493 >COG3547 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Probab=20.58 E-value=47 Score=12.88 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=0.0 Q ss_pred EEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC Q ss_conf 586025788888888753100467527973300685 Q gi|254780673|r 342 TIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRP 377 (467) Q Consensus 342 tii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~P 377 (467) ++|.+-.+ ......+..|.+.|+.+-+||.+.+++ T Consensus 37 ~~v~~Ea~-~~~~~~~~~l~~~g~~v~~i~p~~v~~ 71 (303) T COG3547 37 CIVGIEAT-GYSENLARYLRAEGYPVRLINPRQVKK 71 (303) T ss_pred CEEEEEEC-CCHHHHHHHHHHCCCEEEEECHHHHHH T ss_conf 46999305-211579999976698279987577666 No 494 >PRK10436 hypothetical protein; Provisional Probab=20.56 E-value=51 Score=12.64 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=0.0 Q ss_pred HHHHHHHHHCCCCCEEEEEC Q ss_conf 22355443113650699932 Q gi|254780673|r 146 LRDAIAEEMRRDKDVFIMGE 165 (467) Q Consensus 146 ~~~a~~e~m~~d~~~~~~ge 165 (467) ...++.-.|+.||+|+++|| T Consensus 273 fa~~lrs~LRqDPDVImvGE 292 (461) T PRK10436 273 FQRVLRALLRQDPDVIMVGE 292 (461) T ss_pred HHHHHHHHHCCCCCEEEECC T ss_conf 99999998746999998657 No 495 >PRK06767 methionine gamma-lyase; Provisional Probab=20.54 E-value=51 Score=12.64 Aligned_cols=66 Identities=20% Similarity=0.347 Sum_probs=0.0 Q ss_pred EEECCCCCEE--EEHHHHHHHHHHHHHHHHCCCCCEEEEECC------------------------CCCCCCHHHHHHHH Q ss_conf 4431687458--602578888888875310046752797330------------------------06857999999999 Q gi|254780673|r 334 IHRQGSDVTI--ISFGIGMTYATKAAIELEKNGIDAELIDLR------------------------TIRPMDWQTIFESV 387 (467) Q Consensus 334 i~~~G~diti--i~~G~~~~~a~~aa~~L~~~gi~~~vid~r------------------------~l~Pld~~~i~~sv 387 (467) +++.|+.+.+ -.||.+...+. ..|.+.||.++.+|.. ++.=.|.+.|.+.+ T Consensus 96 ~l~~Gd~vv~~~~~Yg~T~~l~~---~~~~~~gI~~~~~d~~~~~~~~~~i~~~Tklv~~EspsNP~l~v~Di~~i~~~A 172 (386) T PRK06767 96 FLKAGDHIICSNGLYGCTYGFLE---VLEEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVA 172 (386) T ss_pred CCCCCCEEEECCCCCCCHHHHHH---HHHHHCCEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHH T ss_conf 07999989983798223466999---988873758999689888999975688825999977999876712799999986 Q ss_pred HHCCCEEEEECCCCC Q ss_conf 871989999578876 Q gi|254780673|r 388 KKTGRLVTVEEGYPQ 402 (467) Q Consensus 388 ~kt~~~i~vee~~~~ 402 (467) ++.+-+++||..|-+ T Consensus 173 ~~~g~~~vvDNT~at 187 (386) T PRK06767 173 KRNGLLVIVDNTFCS 187 (386) T ss_pred HHCCCEEEEECCCCC T ss_conf 006734997457642 No 496 >KOG2862 consensus Probab=20.50 E-value=52 Score=12.63 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=0.0 Q ss_pred EEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC-CCEEEEECCCCCCCHHHHHHH Q ss_conf 4443168745860257888888887531004675279733006857999999999871-989999578876767899999 Q gi|254780673|r 333 RIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKT-GRLVTVEEGYPQSSVGSTIAN 411 (467) Q Consensus 333 ~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt-~~~i~vee~~~~gg~g~~i~~ 411 (467) +.+..|+.+.++..|. +..++++.++.-|+.++++-..+=--...+.|.+.+..+ -++++|-.+-...|+-..+.+ T Consensus 87 N~lePgd~vLv~~~G~---wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~ 163 (385) T KOG2862 87 NLLEPGDNVLVVSTGT---WGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLA 163 (385) T ss_pred HHCCCCCEEEEEEECH---HHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH T ss_conf 5257897499997233---7778899998608655587158556754999999987158745999834764111155788 Q ss_pred HHHHHHHHH Q ss_conf 999967764 Q gi|254780673|r 412 QVQRKVFDY 420 (467) Q Consensus 412 ~i~e~~f~~ 420 (467) ...+-|..+ T Consensus 164 ~~g~lc~k~ 172 (385) T KOG2862 164 ISGELCHKH 172 (385) T ss_pred HHHHHHHCC T ss_conf 887874067 No 497 >PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional Probab=20.34 E-value=52 Score=12.61 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=0.0 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCC Q ss_conf 10000000000000012235544311365069993243445886653236475408111 Q gi|254780673|r 130 SSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCER 188 (467) Q Consensus 130 ~~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R 188 (467) ..+.++..+.-.+-+|||+|+ |....|.+|.++| |-||+..-|-.| T Consensus 154 ~~P~Ps~~Rc~~LG~Air~AI-es~p~DlRVaiig------------TGGLSHql~gpr 199 (284) T PRK13366 154 QYPVPSGRRCFALGQAIRRAV-ESYDEDLNVQIWG------------TGGMSHQLQGPR 199 (284) T ss_pred CCCCCCHHHHHHHHHHHHHHH-HHCCCCCCEEEEE------------CCCCCCCCCCCC T ss_conf 799999899999999999999-8578776289993------------686557789986 No 498 >PRK06128 oxidoreductase; Provisional Probab=20.34 E-value=52 Score=12.61 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=0.0 Q ss_pred ECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEE--ECCCCCCCCHHHHHHHHHHCCCE Q ss_conf 31687458602578888888875310046752797--33006857999999999871989 Q gi|254780673|r 336 RQGSDVTIISFGIGMTYATKAAIELEKNGIDAELI--DLRTIRPMDWQTIFESVKKTGRL 393 (467) Q Consensus 336 ~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vi--d~r~l~Pld~~~i~~sv~kt~~~ 393 (467) ++|-+|.|.....--..+.++++.++..|..+..+ |++.-.-.+ +.+.+.+++.|++ T Consensus 77 ~eGA~Vvi~~~~~~~~~a~~~~~~i~~~G~~a~~v~~Dvsd~~~~~-~~v~~~~~~~G~i 135 (300) T PRK06128 77 REGADIVLNYLPEEEQDAAEVVQLIQAEGRKAVAVPGDLKDEAFCR-QLVERAVKELGGL 135 (300) T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHHHHHHHHHCCC T ss_conf 8699999942995567899999999965981899974789999999-9999999980999 No 499 >TIGR00364 TIGR00364 exsB protein; InterPro: IPR004479 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , . In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance . The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr .. Probab=20.25 E-value=52 Score=12.60 Aligned_cols=44 Identities=25% Similarity=0.461 Sum_probs=0.0 Q ss_pred EECC--CCCEEEEH--HHH-HHHHHHHHHHHHCC-CCCEE-EEECCCCCCC Q ss_conf 4316--87458602--578-88888887531004-67527-9733006857 Q gi|254780673|r 335 HRQG--SDVTIISF--GIG-MTYATKAAIELEKN-GIDAE-LIDLRTIRPM 378 (467) Q Consensus 335 ~~~G--~ditii~~--G~~-~~~a~~aa~~L~~~-gi~~~-vid~r~l~Pl 378 (467) +++| ..|.-||+ |-. -..=++.|+++.+. ||.-. +||+.+++-| T Consensus 19 ~~~~GkyeV~a~TF~YGQR~H~~Ele~A~~ia~~Lgi~~~~~~Dl~~l~~l 69 (227) T TIGR00364 19 LDEGGKYEVHAITFDYGQRAHSRELESARKIAEALGIRHHFVIDLSLLKQL 69 (227) T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH T ss_conf 961795079985465013789999999999999808970786177999855 No 500 >TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation. Probab=20.17 E-value=52 Score=12.59 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=0.0 Q ss_pred CEEEEECCCCC-CCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 06999324344-58866532364754081110116666278998999988718864456666678999999 Q gi|254780673|r 159 DVFIMGEEVAE-YQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAID 228 (467) Q Consensus 159 ~~~~~gedv~~-~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~d 228 (467) +++| |.+ .|||-|+| .-.-++++||..|.|.++- .+|+-+|=+| T Consensus 2 ~viV----iTSGKGGVGKTT--------------------tTANlG~aLA~lG~kVvli--D~DiGLRNLD 46 (272) T TIGR01968 2 RVIV----ITSGKGGVGKTT--------------------TTANLGTALARLGKKVVLI--DADIGLRNLD 46 (272) T ss_pred EEEE----EEECCCCCCHHH--------------------HHHHHHHHHHHCCCEEEEE--ECCCCCHHHH T ss_conf 5899----981788977358--------------------9899999999619828999--5475703457 Done!