Query         gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 467
No_of_seqs    267 out of 3345
Neff          6.9 
Searched_HMMs 39220
Date          Sun May 29 23:40:09 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780673.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK11892 pyruvate dehydrogenas 100.0       0       0 1112.0  38.7  462    1-462     1-464 (464)
  2 COG0022 AcoB Pyruvate/2-oxoglu 100.0       0       0  814.3  26.0  323  139-462     1-324 (324)
  3 PTZ00182 3-methyl-2-oxobutanat 100.0       0       0  787.1  28.0  331  127-461    22-355 (355)
  4 PRK09212 pyruvate dehydrogenas 100.0       0       0  764.4  28.9  325  138-463     2-326 (327)
  5 KOG0524 consensus              100.0       0       0  761.7  24.2  325  137-461    32-359 (359)
  6 CHL00144 odpB pyruvate dehydro 100.0       0       0  755.1  28.6  323  138-461     2-324 (326)
  7 KOG0525 consensus              100.0       0       0  572.0  15.0  324  134-461    35-361 (362)
  8 COG3958 Transketolase, C-termi 100.0       0       0  404.9  24.2  300  138-460     5-312 (312)
  9 COG1154 Dxs Deoxyxylulose-5-ph 100.0       0       0  387.5  23.7  300  140-464   316-626 (627)
 10 PRK05444 1-deoxy-D-xylulose-5- 100.0       0       0  375.4  24.7  301  139-460   268-576 (576)
 11 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0       0       0  393.8  11.0  167  144-310     1-167 (167)
 12 PRK12315 1-deoxy-D-xylulose-5- 100.0       0       0  364.6  25.3  298  139-461   277-581 (581)
 13 PRK12571 1-deoxy-D-xylulose-5- 100.0       0       0  342.5  23.0  308  137-465   316-633 (642)
 14 PRK05899 transketolase; Review 100.0 3.3E-37 8.5E-42  280.6  23.7  290  140-460   352-660 (661)
 15 pfam02779 Transket_pyr Transke 100.0 2.2E-39 5.6E-44  295.9  12.1  168  139-314     2-173 (174)
 16 KOG0523 consensus              100.0   5E-36 1.3E-40  272.3  20.1  302  137-464   317-629 (632)
 17 PRK12754 transketolase; Review 100.0 7.9E-33   2E-37  249.9  17.9  289  141-460   356-663 (663)
 18 cd07033 TPP_PYR_DXS_TK_like Py 100.0 2.6E-32 6.5E-37  246.3  12.3  151  144-309     1-155 (156)
 19 PRK12753 transketolase; Review 100.0 1.6E-30 4.1E-35  233.7  21.0  292  139-460   353-662 (662)
 20 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 7.9E-30   2E-34  228.8  17.8  316  123-459   300-625 (627)
 21 PRK05704 dihydrolipoamide succ 100.0 1.3E-29 3.3E-34  227.3  12.8   85    1-86      1-85  (406)
 22 PTZ00144 dihydrolipoamide succ 100.0 5.7E-29 1.5E-33  222.8  16.1   86    3-89     58-143 (430)
 23 pfam02780 Transketolase_C Tran 100.0 3.4E-29 8.8E-34  224.3  13.1  123  330-452     1-124 (124)
 24 TIGR01349 PDHac_trf_mito pyruv 100.0 1.3E-29 3.2E-34  227.4   9.2  157    4-161     1-171 (584)
 25 smart00861 Transket_pyr Transk 100.0 4.6E-29 1.2E-33  223.4  12.1  157  141-310     1-167 (168)
 26 PRK11855 dihydrolipoamide acet 100.0 1.6E-28 4.1E-33  219.6  12.4   86    1-87      1-86  (549)
 27 COG0508 AceF Pyruvate/2-oxoglu 100.0 8.2E-28 2.1E-32  214.7  11.5   83    1-84      1-83  (404)
 28 TIGR02927 SucB_Actino 2-oxoglu  99.9 4.3E-28 1.1E-32  216.6   5.9   78    2-80    135-212 (607)
 29 PRK11856 branched-chain alpha-  99.9 4.1E-26   1E-30  202.7  13.9   75    3-78      2-76  (324)
 30 TIGR02927 SucB_Actino 2-oxoglu  99.9 2.8E-27   7E-32  211.0   6.2   86    1-87      1-86  (607)
 31 KOG0557 consensus               99.9 3.5E-26 8.8E-31  203.3  10.8   91    3-93     39-129 (470)
 32 TIGR01347 sucB 2-oxoglutarate   99.9 5.9E-27 1.5E-31  208.6   5.5   76    3-79      1-76  (435)
 33 PRK11855 dihydrolipoamide acet  99.9 1.6E-25   4E-30  198.7  11.5   83    2-85    117-199 (549)
 34 PTZ00089 transketolase; Provis  99.9 3.9E-23 9.8E-28  181.9  17.9  288  141-462   356-667 (670)
 35 PRK11854 aceF dihydrolipoamide  99.9 2.5E-24 6.4E-29  190.2  11.3   83    1-86      1-83  (630)
 36 TIGR01348 PDHac_trf_long pyruv  99.9 3.3E-22 8.3E-27  175.4  10.9  201    3-220   207-417 (655)
 37 KOG0559 consensus               99.9 2.6E-22 6.5E-27  176.1   6.4   77    3-80     73-149 (457)
 38 PRK11854 aceF dihydrolipoamide  99.8 8.6E-21 2.2E-25  165.4  10.6   79    3-84    106-184 (630)
 39 TIGR01349 PDHac_trf_mito pyruv  99.8 1.1E-20 2.8E-25  164.7   8.7  337    3-373   128-504 (584)
 40 TIGR01348 PDHac_trf_long pyruv  99.8 2.6E-20 6.7E-25  162.0   9.0   81    3-84      1-81  (655)
 41 COG0021 TktA Transketolase [Ca  99.8 2.5E-18 6.4E-23  148.1  18.6  292  138-461   352-663 (663)
 42 cd06663 Biotinyl_lipoyl_domain  99.8 2.3E-19   6E-24  155.4   9.4   72    5-77      2-73  (73)
 43 cd06849 lipoyl_domain Lipoyl d  99.8 1.5E-18 3.9E-23  149.6   9.4   74    3-77      1-74  (74)
 44 pfam00364 Biotin_lipoyl Biotin  99.7 9.2E-18 2.3E-22  144.2   8.1   73    3-77      1-73  (73)
 45 TIGR00232 tktlase_bact transke  99.6 1.4E-14 3.7E-19  121.8  14.9  291  140-461   355-675 (675)
 46 PRK08659 2-oxoglutarate ferred  99.6   4E-13   1E-17  111.6  16.6  241  188-460    50-376 (377)
 47 PRK07119 2-ketoisovalerate fer  99.6 1.8E-12 4.5E-17  107.1  18.3  243  189-461    50-349 (350)
 48 PRK09627 oorA 2-oxoglutarate-a  99.5 2.3E-12 5.9E-17  106.3  16.4  237  188-459    49-375 (375)
 49 PRK12270 kgd alpha-ketoglutara  99.5 6.1E-12 1.5E-16  103.3  15.9  280  145-439   891-1215(1234)
 50 KOG0558 consensus               99.5   1E-13 2.7E-18  115.7   5.8   78    3-81     65-142 (474)
 51 PRK09404 kgd alpha-ketoglutara  99.4 3.3E-11 8.4E-16   98.2  17.3  282  144-439   587-912 (931)
 52 cd06850 biotinyl_domain The bi  99.3 9.7E-12 2.5E-16  101.9   8.0   61   16-77      7-67  (67)
 53 PRK08367 porA pyruvate ferredo  99.3 1.1E-09 2.8E-14   87.5  17.6  213  188-416    52-338 (395)
 54 PRK09622 porA pyruvate flavodo  99.3 1.3E-09 3.4E-14   86.9  17.8  250  188-464    58-388 (407)
 55 PRK08366 vorA 2-ketoisovalerat  99.3 5.6E-10 1.4E-14   89.6  14.8  242  194-462    60-380 (394)
 56 PRK05641 putative acetyl-CoA c  99.1 4.9E-10 1.2E-14   90.0   8.1   62   16-78     87-148 (148)
 57 COG0511 AccB Biotin carboxyl c  99.0 1.3E-09 3.3E-14   87.0   8.1   62   16-78     78-139 (140)
 58 PRK06549 acetyl-CoA carboxylas  99.0 1.4E-09 3.5E-14   86.8   8.0   61   17-78     72-132 (132)
 59 PRK08225 acetyl-CoA carboxylas  99.0 4.2E-09 1.1E-13   83.4   8.3   62   16-78      9-70  (70)
 60 PRK05889 putative acetyl-CoA c  98.9 5.2E-09 1.3E-13   82.8   8.3   61   16-77     10-70  (71)
 61 TIGR03336 IOR_alpha indolepyru  98.9 1.1E-06 2.9E-11   66.3  17.9  249  183-461    40-337 (595)
 62 PRK09282 pyruvate carboxylase   98.8 3.3E-08 8.4E-13   77.2   8.1   27  334-360   328-354 (580)
 63 PRK07051 hypothetical protein;  98.8 2.2E-08 5.7E-13   78.3   7.1   58   21-79     23-80  (80)
 64 PRK12999 pyruvate carboxylase;  98.8 3.9E-08 9.9E-13   76.6   8.0   81  348-429   689-772 (1147)
 65 COG0567 SucA 2-oxoglutarate de  98.7 2.2E-07 5.7E-12   71.3  11.4  278  145-436   565-884 (906)
 66 COG4231 Indolepyruvate ferredo  98.7 1.7E-06 4.3E-11   65.1  15.3  254  181-463    49-356 (640)
 67 PRK06302 acetyl-CoA carboxylas  98.7 6.1E-08 1.6E-12   75.3   6.5   55   22-77    100-154 (155)
 68 COG0674 PorA Pyruvate:ferredox  98.6 2.8E-06   7E-11   63.7  14.5  231  188-433    48-349 (365)
 69 KOG0451 consensus               98.6 3.1E-07 7.9E-12   70.3   9.0  293  145-455   563-910 (913)
 70 KOG0450 consensus               98.6 2.4E-06 6.2E-11   64.1  12.7  282  144-436   647-991 (1017)
 71 TIGR01108 oadA oxaloacetate de  98.5 1.3E-07 3.3E-12   73.0   4.6   57   17-74    560-616 (616)
 72 COG3957 Phosphoketolase [Carbo  98.5 8.9E-06 2.3E-10   60.1  12.9  225  144-379   405-670 (793)
 73 TIGR02712 urea_carbox urea car  98.4 9.2E-07 2.4E-11   67.0   7.4   61   16-77   1165-1225(1226)
 74 COG4770 Acetyl/propionyl-CoA c  98.3 3.6E-06 9.3E-11   62.8   7.4   41  335-378   372-421 (645)
 75 PRK09405 aceE pyruvate dehydro  98.2   6E-05 1.5E-09   54.3  11.5  303  144-463   496-859 (886)
 76 TIGR01235 pyruv_carbox pyruvat  98.1 1.2E-05   3E-10   59.3   6.7   81  350-431   708-792 (1169)
 77 COG1038 PycA Pyruvate carboxyl  98.0 1.7E-05 4.4E-10   58.1   6.3   80  349-429   692-774 (1149)
 78 KOG0368 consensus               97.8  0.0001 2.6E-09   52.6   6.7   69   13-83    690-758 (2196)
 79 KOG0369 consensus               97.7  0.0001 2.7E-09   52.6   6.3   13  170-182   604-617 (1176)
 80 PRK11578 macrolide transporter  97.7 0.00013 3.3E-09   51.9   6.5   36   44-80     37-72  (347)
 81 PRK11556 multidrug efflux syst  97.6 0.00019 4.7E-09   50.8   6.4   42   37-80     80-121 (415)
 82 PRK13012 2-oxoacid dehydrogena  97.6 0.00075 1.9E-08   46.6   9.1  263  187-463   573-871 (898)
 83 PRK03598 hypothetical protein;  97.5 0.00081 2.1E-08   46.3   7.8   40   38-80     38-77  (331)
 84 PRK05261 putative phosphoketol  97.3  0.0045 1.2E-07   41.1  10.5  256  144-416   395-700 (786)
 85 COG2609 AceE Pyruvate dehydrog  97.3   0.012 2.9E-07   38.3  12.4  293  140-463   492-860 (887)
 86 TIGR03186 AKGDH_not_PDH alpha-  97.3  0.0023 5.9E-08   43.1   8.8  267  186-463   559-861 (889)
 87 PRK10476 multidrug resistance   97.3  0.0017 4.4E-08   44.0   7.8   49   27-80     36-84  (348)
 88 pfam01855 POR_N domain. This f  97.3   0.002   5E-08   43.6   7.9  108  192-310    41-154 (230)
 89 PRK09578 periplasmic multidrug  97.2  0.0019 4.9E-08   43.7   7.6   57   22-80     41-97  (385)
 90 TIGR03077 not_gcvH glycine cle  97.2 0.00047 1.2E-08   48.0   4.2   41   23-63     37-77  (110)
 91 cd06586 TPP_enzyme_PYR Pyrimid  97.2  0.0041   1E-07   41.4   8.7  141  149-306     2-150 (154)
 92 KOG0559 consensus               97.1  0.0015 3.9E-08   44.4   6.3   28   15-42    122-149 (457)
 93 PRK10559 p-hydroxybenzoic acid  97.1  0.0025 6.4E-08   42.9   7.3   33   46-79     48-80  (310)
 94 PRK00624 glycine cleavage syst  97.1 0.00066 1.7E-08   47.0   4.3   40   23-62     38-77  (113)
 95 PRK13030 2-oxoacid ferredoxin   97.1   0.029 7.4E-07   35.4  13.7  310  129-462    19-406 (1168)
 96 cd07034 TPP_PYR_PFOR_IOR-alpha  97.1  0.0038 9.6E-08   41.6   8.1  109  187-307    42-157 (160)
 97 TIGR00759 aceE 2-oxo-acid dehy  97.1   0.011 2.8E-07   38.4  10.4  219  186-433   569-822 (905)
 98 cd06848 GCS_H Glycine cleavage  97.1 0.00095 2.4E-08   45.8   4.9   47   17-63     29-76  (96)
 99 KOG0238 consensus               97.0   0.001 2.6E-08   45.7   4.6   12  343-354   386-397 (670)
100 PRK05704 dihydrolipoamide succ  97.0    0.01 2.7E-07   38.6   9.4   36   12-47     49-84  (406)
101 PRK09859 multidrug efflux syst  96.9  0.0037 9.5E-08   41.7   6.7   36   44-80     60-95  (385)
102 PRK13380 glycine cleavage syst  96.9  0.0012 3.1E-08   45.1   4.0   40   23-62     45-84  (132)
103 PRK01202 glycine cleavage syst  96.8  0.0016 4.2E-08   44.2   4.3   46   17-62     37-83  (127)
104 pfam01597 GCV_H Glycine cleava  96.8  0.0017 4.3E-08   44.1   4.2   46   17-62     31-77  (122)
105 COG0509 GcvH Glycine cleavage   96.7  0.0019 4.9E-08   43.7   3.9   44   17-60     39-83  (131)
106 cd06252 M14_ASTE_ASPA_like_2 A  96.7   0.011 2.9E-07   38.3   7.7   18  144-161   109-126 (316)
107 TIGR00531 BCCP acetyl-CoA carb  96.6  0.0019 4.8E-08   43.8   3.3   58   20-78    101-158 (159)
108 PRK09783 copper/silver efflux   96.6   0.016   4E-07   37.3   8.0   35   44-79    120-155 (407)
109 TIGR03309 matur_yqeB selenium-  96.2   0.018 4.5E-07   37.0   6.4   56   20-81    175-230 (256)
110 PTZ00144 dihydrolipoamide succ  96.2   0.022 5.7E-07   36.2   6.8   32   12-43    104-135 (430)
111 PRK05352 Na(+)-translocating N  96.0  0.0059 1.5E-07   40.3   3.1   43   17-64     39-83  (448)
112 PRK09193 indolepyruvate ferred  96.0    0.15 3.7E-06   30.5  13.2  306  132-461    21-404 (1155)
113 cd06251 M14_ASTE_ASPA_like_1 A  96.0   0.044 1.1E-06   34.2   7.4   18  145-162    95-112 (287)
114 TIGR03297 Ppyr-DeCO2ase phosph  95.8   0.029 7.5E-07   35.4   5.9  168  181-360    21-209 (361)
115 PRK11892 pyruvate dehydrogenas  95.8   0.029 7.4E-07   35.4   5.7   28   52-80     15-42  (464)
116 TIGR00239 2oxo_dh_E1 2-oxoglut  95.7   0.064 1.6E-06   33.0   7.4  282  149-437   629-971 (990)
117 cd06250 M14_PaAOTO_like An unc  95.6   0.066 1.7E-06   32.9   7.1   13   47-59      4-16  (359)
118 TIGR01843 type_I_hlyD type I s  95.2   0.014 3.5E-07   37.7   2.6   37   46-83     44-80  (434)
119 TIGR00527 gcvH glycine cleavag  95.2   0.017 4.4E-07   37.0   3.0   37   24-60     44-80  (132)
120 pfam00529 HlyD HlyD family sec  95.1   0.023 5.9E-07   36.1   3.5   35   45-80      2-36  (304)
121 COG3608 Predicted deacylase [G  95.1   0.059 1.5E-06   33.3   5.5   22  141-162   120-141 (331)
122 pfam05896 NQRA Na(+)-transloca  95.0   0.027 6.8E-07   35.7   3.6   44   17-63     38-83  (257)
123 PRK07051 hypothetical protein;  94.6    0.04   1E-06   34.4   3.7   26   15-40     54-79  (80)
124 PRK08225 acetyl-CoA carboxylas  94.5   0.062 1.6E-06   33.1   4.4   33   46-79      2-34  (70)
125 cd06254 M14_ASTE_ASPA_like_4 A  94.2    0.17 4.2E-06   30.1   6.1   19  144-162    93-111 (288)
126 PRK09259 putative oxalyl-CoA d  94.2    0.24 6.2E-06   29.0   6.8   47  144-193   204-251 (572)
127 pfam03894 XFP D-xylulose 5-pho  93.8    0.18 4.6E-06   29.9   5.6  148  146-300     4-179 (179)
128 PRK03598 hypothetical protein;  93.5    0.17 4.4E-06   30.0   5.0   30   15-44     50-79  (331)
129 PRK05889 putative acetyl-CoA c  93.5    0.11 2.8E-06   31.4   4.0   33   46-79      3-35  (71)
130 cd06850 biotinyl_domain The bi  93.3    0.12   3E-06   31.1   4.0   33   47-80      1-33  (67)
131 COG0511 AccB Biotin carboxyl c  93.3    0.13 3.3E-06   30.8   4.1   34   45-79     70-103 (140)
132 cd02008 TPP_IOR_alpha Thiamine  93.3     0.7 1.8E-05   25.7   8.1  110  188-306    45-172 (178)
133 pfam00529 HlyD HlyD family sec  93.2    0.13 3.4E-06   30.8   4.1   35   14-48      8-42  (304)
134 TIGR02176 pyruv_ox_red pyruvat  93.2    0.41   1E-05   27.4   6.6   91  340-431   266-365 (1194)
135 cd06255 M14_ASTE_ASPA_like_5 A  93.0    0.34 8.6E-06   28.0   5.9   29  131-161    88-116 (293)
136 PRK06748 hypothetical protein;  92.9    0.57 1.5E-05   26.3   7.0   65   15-80     12-77  (84)
137 TIGR03254 oxalate_oxc oxalyl-C  92.8    0.48 1.2E-05   26.9   6.4   16  448-463   513-528 (554)
138 COG4656 RnfC Predicted NADH:ub  92.4    0.14 3.7E-06   30.5   3.3   42   17-60     42-83  (529)
139 PRK12784 hypothetical protein;  92.3    0.79   2E-05   25.4   7.1   65   15-80     12-77  (84)
140 PRK06549 acetyl-CoA carboxylas  91.8    0.28 7.1E-06   28.5   4.3   34   45-79     63-96  (132)
141 pfam04952 AstE_AspA Succinylgl  91.7    0.78   2E-05   25.4   6.4   19  144-162    85-103 (289)
142 PRK11556 multidrug efflux syst  91.6    0.24   6E-06   29.0   3.7   31   15-45     94-124 (415)
143 cd06663 Biotinyl_lipoyl_domain  91.5    0.21 5.4E-06   29.4   3.3   30   50-80     10-39  (73)
144 COG0508 AceF Pyruvate/2-oxoglu  91.5    0.26 6.7E-06   28.7   3.8   29   51-80     14-42  (404)
145 PRK10476 multidrug resistance   91.5    0.41   1E-05   27.4   4.8   31   15-45     57-87  (348)
146 PRK05641 putative acetyl-CoA c  91.4    0.33 8.5E-06   28.0   4.3   32   47-79     81-112 (148)
147 PRK11578 macrolide transporter  91.1    0.34 8.7E-06   27.9   4.1   32   15-46     45-76  (347)
148 COG1726 NqrA Na+-transporting   90.9    0.36 9.1E-06   27.8   4.0   40   21-63     42-83  (447)
149 PRK11856 branched-chain alpha-  90.9    0.32 8.2E-06   28.1   3.8  150   50-208    12-166 (324)
150 TIGR01108 oadA oxaloacetate de  90.8    0.28 7.1E-06   28.6   3.4   62  139-201     3-84  (616)
151 KOG3373 consensus               90.7    0.19 4.7E-06   29.8   2.4   37   25-61     89-125 (172)
152 cd06849 lipoyl_domain Lipoyl d  90.5    0.32 8.1E-06   28.1   3.5   30   50-80     11-40  (74)
153 TIGR00998 8a0101 efflux pump m  90.0     0.4   1E-05   27.4   3.7   35   45-80     42-77  (379)
154 pfam00364 Biotin_lipoyl Biotin  89.7    0.41   1E-05   27.4   3.5   26   53-80     14-39  (73)
155 PRK09578 periplasmic multidrug  89.1    0.61 1.6E-05   26.2   4.0   29   15-43     70-98  (385)
156 cd01134 V_A-ATPase_A V/A-type   88.8     1.9 4.8E-05   22.7   6.4   57   23-82     54-113 (369)
157 TIGR02971 heterocyst_DevB ABC   88.5    0.18 4.5E-06   29.9   1.0   40   46-86     14-59  (363)
158 TIGR01843 type_I_hlyD type I s  88.2    0.32 8.1E-06   28.1   2.1   35   13-47     48-82  (434)
159 cd00568 TPP_enzymes Thiamine p  88.0     1.6 4.1E-05   23.2   5.6  110  184-306    34-164 (168)
160 PRK07449 2-succinyl-6-hydroxy-  88.0     2.1 5.4E-05   22.4   6.6   13  448-460   504-516 (548)
161 PRK09859 multidrug efflux syst  87.9    0.82 2.1E-05   25.2   4.0   30   15-44     68-97  (385)
162 PRK05035 electron transport co  87.9    0.59 1.5E-05   26.2   3.3   47   13-60     48-94  (725)
163 TIGR02645 ARCH_P_rylase putati  87.8     0.4   1E-05   27.4   2.4   70  338-417   314-389 (499)
164 PRK13479 2-aminoethylphosphona  86.9     2.4 6.2E-05   22.0   7.1   11  273-283   195-205 (368)
165 cd02002 TPP_BFDC Thiamine pyro  86.9     2.1 5.3E-05   22.4   5.6   29  278-306   146-174 (178)
166 PRK11269 glyoxylate carboligas  86.8     2.4 6.2E-05   21.9   6.1   13  448-460   527-539 (591)
167 pfam02749 QRPTase_N Quinolinat  86.6    0.81 2.1E-05   25.3   3.4   23   20-42     47-69  (88)
168 TIGR01936 nqrA NADH:ubiquinone  86.4    0.37 9.4E-06   27.7   1.6   71   17-95     38-110 (466)
169 pfam09891 DUF2118 Uncharacteri  85.9     2.7 6.9E-05   21.6   5.8   45   15-59     86-131 (149)
170 PRK13029 2-oxoacid ferredoxin   85.8     2.7   7E-05   21.6  11.3  308  136-461    27-417 (1186)
171 TIGR01945 rnfC electron transp  85.6    0.77   2E-05   25.5   2.9   43   17-60     40-82  (444)
172 cd02013 TPP_Xsc_like Thiamine   85.1     2.7 6.9E-05   21.6   5.5  114  181-305    38-173 (196)
173 pfam07831 PYNP_C Pyrimidine nu  85.1    0.81 2.1E-05   25.3   2.8   30   14-43     28-57  (75)
174 cd02003 TPP_IolD Thiamine pyro  85.0       3 7.6E-05   21.3   6.5   38  268-306   142-179 (205)
175 TIGR01730 RND_mfp efflux trans  85.0     2.4   6E-05   22.0   5.1   36   45-81     26-61  (333)
176 PRK09016 quinolinate phosphori  84.6    0.95 2.4E-05   24.8   3.0   42  375-419   234-275 (296)
177 TIGR00078 nadC nicotinate-nucl  84.5     1.3 3.2E-05   23.9   3.6   48  367-420   207-257 (276)
178 TIGR02971 heterocyst_DevB ABC   84.4     0.6 1.5E-05   26.2   1.9   40    9-48     16-60  (363)
179 PRK06978 nicotinate-nucleotide  84.3     1.3 3.3E-05   23.8   3.6   41  376-419   226-266 (288)
180 PRK09824 beta-glucoside-specif  83.1     1.9 4.9E-05   22.6   4.0   17   41-57     35-51  (625)
181 TIGR02644 Y_phosphoryl pyrimid  83.0     1.3 3.4E-05   23.8   3.2   45  381-425   218-263 (425)
182 PRK07092 benzoylformate decarb  82.8     3.6 9.3E-05   20.7   8.2   47  144-193   185-232 (521)
183 COG0157 NadC Nicotinate-nucleo  82.7     1.5 3.9E-05   23.4   3.4   59  367-436   209-269 (280)
184 cd00210 PTS_IIA_glc PTS_IIA, P  82.4    0.91 2.3E-05   24.9   2.1   17   60-77     85-101 (124)
185 COG0426 FpaA Uncharacterized f  82.3     3.4 8.8E-05   20.9   5.1   53  340-395   248-303 (388)
186 cd02009 TPP_SHCHC_synthase Thi  82.3     3.8 9.7E-05   20.6   7.1  107  188-306    43-170 (175)
187 PRK07896 nicotinate-nucleotide  82.1     1.6 4.2E-05   23.1   3.4   39  377-418   226-267 (288)
188 COG0845 AcrA Membrane-fusion p  81.8       4  0.0001   20.4   6.1   46   33-80     55-100 (372)
189 PRK00149 dnaA chromosomal repl  81.8     2.5 6.4E-05   21.8   4.2  172  222-416   121-308 (447)
190 cd02010 TPP_ALS Thiamine pyrop  81.7       4  0.0001   20.4   5.7  114  180-306    32-165 (177)
191 pfam00358 PTS_EIIA_1 phosphoen  80.2     1.2 3.1E-05   24.1   2.1   17   60-77     90-106 (133)
192 PRK04350 thymidine phosphoryla  80.0     2.6 6.7E-05   21.7   3.8   18  195-212   124-141 (502)
193 PRK06106 nicotinate-nucleotide  80.0     2.4 6.2E-05   21.9   3.6   55  367-432   213-267 (281)
194 TIGR01043 ATP_syn_A_arch ATP s  78.9     4.9 0.00012   19.8   6.1   56   23-82    122-181 (584)
195 cd06451 AGAT_like Alanine-glyo  78.9       4  0.0001   20.4   4.5   45  406-460   304-355 (356)
196 cd01573 modD_like ModD; Quinol  78.6     2.5 6.4E-05   21.9   3.3   50  367-419   204-253 (272)
197 COG1155 NtpA Archaeal/vacuolar  78.0     5.2 0.00013   19.6   6.3   59   20-82    114-180 (588)
198 PRK08385 nicotinate-nucleotide  77.8     2.7   7E-05   21.6   3.3   50  367-419   204-255 (279)
199 PRK05848 nicotinate-nucleotide  77.2     2.9 7.4E-05   21.4   3.3   48  367-417   202-249 (272)
200 TIGR03327 AMP_phos AMP phospho  76.8     3.2 8.2E-05   21.1   3.5   11  349-359   327-337 (500)
201 TIGR01420 pilT_fam twitching m  76.6     1.6 4.2E-05   23.1   2.0   85  335-435   197-289 (350)
202 PRK06543 nicotinate-nucleotide  76.6       3 7.7E-05   21.3   3.3   47  367-419   214-260 (281)
203 PRK08072 nicotinate-nucleotide  76.4     3.1 7.9E-05   21.2   3.3   47  367-419   209-255 (277)
204 PRK06096 molybdenum transport   76.3     2.7 6.9E-05   21.6   3.0   51  366-419   209-259 (284)
205 TIGR00830 PTBA PTS system, glu  75.7     1.4 3.5E-05   23.7   1.3   28   19-46     89-116 (129)
206 TIGR01995 PTS-II-ABC-beta PTS   75.5       1 2.6E-05   24.6   0.6   12  199-210   410-421 (660)
207 cd01572 QPRTase Quinolinate ph  75.2       3 7.7E-05   21.3   3.0   54  367-431   203-256 (268)
208 PRK05742 nicotinate-nucleotide  75.2     2.9 7.5E-05   21.4   2.9   47  367-419   210-256 (277)
209 pfam06898 YqfD Putative stage   74.7     5.1 0.00013   19.7   4.0   18   47-64    191-208 (383)
210 cd02014 TPP_POX Thiamine pyrop  74.5     6.4 0.00016   19.0   6.6  112  184-306    39-168 (178)
211 pfam03446 NAD_binding_2 NAD bi  73.6     6.7 0.00017   18.9   4.6   33  394-426    90-122 (163)
212 PRK07428 nicotinate-nucleotide  73.3     4.1  0.0001   20.3   3.3   59  366-432   213-271 (285)
213 cd02006 TPP_Gcl Thiamine pyrop  73.0     6.9 0.00018   18.8   7.4   62  180-253    41-108 (202)
214 cd02015 TPP_AHAS Thiamine pyro  73.0     6.9 0.00018   18.8   4.9  113  181-306    35-169 (186)
215 cd01568 QPRTase_NadC Quinolina  72.8     4.1 0.00011   20.3   3.2   48  367-418   202-249 (269)
216 pfam02666 PS_Dcarbxylase Phosp  72.6     7.1 0.00018   18.7   4.7   24  332-355   155-178 (201)
217 COG1566 EmrA Multidrug resista  72.5     6.7 0.00017   18.8   4.2   40   40-80     43-87  (352)
218 COG2190 NagE Phosphotransferas  72.4     2.3 5.9E-05   22.1   1.8   27   18-44     87-113 (156)
219 PRK10255 N-acetyl glucosamine   70.7     2.4 6.2E-05   21.9   1.6   10  387-396   431-440 (648)
220 PRK08266 hypothetical protein;  70.4     7.9  0.0002   18.4   7.4   16  448-463   497-512 (531)
221 TIGR00999 8a0102 Membrane Fusi  70.4     5.7 0.00015   19.3   3.5   36   46-82    105-140 (284)
222 PRK06457 pyruvate dehydrogenas  70.3     7.9  0.0002   18.4   5.9   14  448-461   494-507 (549)
223 COG0075 Serine-pyruvate aminot  70.0       8  0.0002   18.3   6.1   15  272-286   194-208 (383)
224 COG4032 Predicted thiamine-pyr  70.0     2.3 5.9E-05   22.1   1.4  122  178-309    31-162 (172)
225 PRK07789 acetolactate synthase  68.5     8.6 0.00022   18.1  10.0  156  129-306    20-186 (612)
226 KOG1668 consensus               67.9     2.9 7.4E-05   21.4   1.5   14  387-400   190-203 (231)
227 PRK12474 hypothetical protein;  67.8     8.8 0.00023   18.0   6.6   16  448-463   494-509 (518)
228 cd07035 TPP_PYR_POX_like Pyrim  67.7     8.9 0.00023   18.0   5.7  118  178-306    24-151 (155)
229 pfam07462 MSP1_C Merozoite sur  67.5     4.9 0.00012   19.8   2.6   38  163-200   339-376 (574)
230 TIGR02153 gatD_arch glutamyl-t  67.4       9 0.00023   17.9   8.4  150  104-296    54-226 (413)
231 TIGR02876 spore_yqfD sporulati  66.9     3.8 9.7E-05   20.6   2.0   29   45-73    191-219 (406)
232 COG0213 DeoA Thymidine phospho  66.1       7 0.00018   18.7   3.2   12  387-398   389-400 (435)
233 pfam03358 FMN_red NADPH-depend  66.1     9.5 0.00024   17.8   5.8   27  349-375    16-42  (147)
234 PRK02458 ribose-phosphate pyro  65.9     9.6 0.00024   17.8   4.0   41  422-463   268-310 (323)
235 PRK06559 nicotinate-nucleotide  64.9     5.7 0.00015   19.3   2.6   48  376-431   224-271 (290)
236 cd07037 TPP_PYR_MenD Pyrimidin  64.6      10 0.00026   17.6   6.6  108  188-305    37-157 (162)
237 PTZ00142 6-phosphogluconate de  62.1      11 0.00029   17.3   6.6   94  149-267    90-191 (474)
238 TIGR02013 rpoB DNA-directed RN  61.3     4.4 0.00011   20.1   1.4   29  186-219   724-752 (1449)
239 PRK02597 DNA-directed RNA poly  61.0      12  0.0003   17.2   3.6   35   22-56    410-451 (1295)
240 COG1071 AcoA Pyruvate/2-oxoglu  60.5      12  0.0003   17.1   5.0  105  191-309   135-258 (358)
241 COG1152 CdhA CO dehydrogenase/  60.4      12  0.0003   17.1   6.6   25  341-365   611-635 (772)
242 PRK08617 acetolactate synthase  60.4      12 0.00031   17.1  12.3   17  447-463   510-526 (552)
243 TIGR01931 cysJ sulfite reducta  60.3      12 0.00031   17.1   4.2   93  337-429   340-488 (628)
244 CHL00117 rpoC2 RNA polymerase   60.2      12 0.00031   17.1   3.6   36   21-56    408-451 (1350)
245 PRK08155 acetolactate synthase  59.8      12 0.00031   17.0   5.1   16  448-463   518-533 (564)
246 COG0680 HyaD Ni,Fe-hydrogenase  58.3      13 0.00033   16.8   4.6   14  366-379    36-49  (160)
247 cd03035 ArsC_Yffb Arsenate Red  57.9      13 0.00033   16.8   4.4   40  351-391    10-49  (105)
248 TIGR00955 3a01204 Pigment prec  57.3      13 0.00034   16.7   3.4  111  137-290   173-285 (671)
249 PRK07418 acetolactate synthase  55.7      14 0.00036   16.5   9.8   26  194-219    67-92  (615)
250 TIGR00072 hydrog_prot hydrogen  54.9      15 0.00037   16.5   4.2   30  366-397    39-68  (170)
251 TIGR03301 PhnW-AepZ 2-aminoeth  54.7      15 0.00038   16.4   6.6   15  271-285   187-201 (355)
252 COG0034 PurF Glutamine phospho  54.4      15 0.00038   16.4   3.9   97  340-439   285-396 (470)
253 pfam02775 TPP_enzyme_C Thiamin  53.6      15 0.00039   16.3   4.4  111  185-306    17-148 (150)
254 PRK08327 acetolactate synthase  53.3      15 0.00039   16.3   7.8   19  195-213    58-76  (568)
255 TIGR00354 polC DNA polymerase   53.2       9 0.00023   17.9   1.9  109  159-268   842-978 (1173)
256 PRK07064 hypothetical protein;  53.1      16  0.0004   16.3   5.4   14  448-461   503-516 (544)
257 TIGR03257 met_CoM_red_bet meth  52.9      13 0.00034   16.8   2.8   12  349-360   297-308 (433)
258 pfam01551 Peptidase_M23 Peptid  52.4      11 0.00028   17.4   2.2   68    3-81      6-76  (96)
259 cd07039 TPP_PYR_POX Pyrimidine  51.6      16 0.00042   16.1   8.0  118  178-305    27-153 (164)
260 pfam11160 DUF2945 Protein of u  51.6      16 0.00042   16.1   3.7   34   11-44      9-48  (62)
261 PRK09107 acetolactate synthase  51.5      16 0.00042   16.1   7.8   14  435-448   562-575 (594)
262 PRK07308 flavodoxin; Validated  51.5      17 0.00042   16.1   4.2   58  347-411    13-70  (147)
263 PRK06048 acetolactate synthase  51.5      17 0.00042   16.1   7.3   47  145-193   196-242 (562)
264 TIGR03393 indolpyr_decarb indo  50.8      17 0.00043   16.0   5.1   14  447-460   501-514 (539)
265 TIGR01135 glmS glucosamine--fr  50.7      17 0.00042   16.1   3.0   41  331-371   298-339 (628)
266 PRK07524 hypothetical protein;  50.4      17 0.00044   16.0   7.2   16  448-463   504-519 (534)
267 TIGR00874 talAB transaldolase;  50.3     6.9 0.00018   18.8   0.9   58  348-406   136-210 (324)
268 PRK00941 acetyl-CoA decarbonyl  50.0      17 0.00044   15.9   5.7   24  342-365   614-637 (779)
269 PRK11637 hypothetical protein;  49.6      10 0.00026   17.5   1.8   14  332-345   362-375 (404)
270 smart00226 LMWPc Low molecular  48.9      18 0.00046   15.8   4.9   91  354-462    44-140 (140)
271 PRK07050 cystathionine beta-ly  48.7      18 0.00046   15.8   5.6   47  145-194    92-139 (394)
272 cd03034 ArsC_ArsC Arsenate Red  48.0      19 0.00047   15.7   4.3   76  352-429    11-97  (112)
273 TIGR01315 5C_CHO_kinase FGGY-f  48.0       7 0.00018   18.7   0.7  104  341-446   439-556 (574)
274 CHL00006 consensus              48.0      19 0.00047   15.7   3.5   36   21-56    405-448 (1372)
275 TIGR03394 indol_phenyl_DC indo  47.9      19 0.00048   15.7   6.4   38  154-193   198-236 (535)
276 PRK06276 acetolactate synthase  47.6      19 0.00048   15.7   8.8   31  433-463   548-585 (586)
277 PRK05569 flavodoxin; Provision  47.5      17 0.00043   16.0   2.6   32  345-376    11-42  (141)
278 PRK08236 hypothetical protein;  47.4       8  0.0002   18.3   0.9   49  147-196    14-62  (207)
279 PRK06456 acetolactate synthase  47.2      19 0.00049   15.6   8.9   46  145-192   196-241 (572)
280 PRK08322 acetolactate synthase  47.0      19 0.00049   15.6   6.3   34  159-194   199-232 (547)
281 COG1069 AraB Ribulose kinase [  46.6      15 0.00037   16.5   2.1   82  341-425   403-490 (544)
282 PRK06242 flavodoxin; Provision  46.5      20  0.0005   15.6   5.9   62  394-457    79-141 (150)
283 PRK05939 hypothetical protein;  46.5      20  0.0005   15.6   3.8   46  145-194    73-119 (396)
284 COG2805 PilT Tfp pilus assembl  46.3      14 0.00035   16.7   2.0   29  404-433   257-285 (353)
285 cd02005 TPP_PDC_IPDC Thiamine   45.4      20 0.00052   15.5   7.9  108  185-305    39-168 (183)
286 COG0028 IlvB Thiamine pyrophos  45.3      20 0.00052   15.5   6.4   19  195-213    47-65  (550)
287 cd02004 TPP_BZL_OCoD_HPCL Thia  45.1      21 0.00052   15.4   8.3  115  180-306    32-167 (172)
288 pfam09363 XFP_C XFP C-terminal  45.0      20 0.00051   15.5   2.6  133  226-392    13-164 (203)
289 pfam00308 Bac_DnaA Bacterial d  44.9      21 0.00053   15.4   4.8   71  227-302    15-87  (219)
290 PRK06222 ferredoxin-NADP(+) re  44.9      21 0.00053   15.4   4.5   26  342-368   183-208 (281)
291 PRK04192 V-type ATP synthase s  44.8      21 0.00053   15.4   6.7   54   24-80    124-180 (585)
292 PRK08045 cystathionine gamma-s  44.8      21 0.00053   15.4   4.3   51  145-199    79-130 (386)
293 PRK12490 6-phosphogluconate de  44.0      21 0.00054   15.3   5.2   24  173-196    97-122 (298)
294 COG4635 HemG Flavodoxin [Energ  43.8      21 0.00055   15.3   7.6   72  347-426    12-83  (175)
295 PRK07979 acetolactate synthase  43.1      22 0.00056   15.2  12.9   14  448-461   520-533 (574)
296 PRK07710 acetolactate synthase  41.7      23 0.00059   15.1   9.8   13  448-460   523-535 (571)
297 cd01131 PilT Pilus retraction   41.5      14 0.00035   16.6   1.4   19  147-165    64-82  (198)
298 pfam02776 TPP_enzyme_N Thiamin  41.4      23 0.00059   15.1   6.2  118  177-305    27-156 (172)
299 PRK05858 hypothetical protein;  41.3      23  0.0006   15.0   6.3   47  144-193   193-240 (543)
300 PRK05452 anaerobic nitric oxid  41.1      23  0.0006   15.0   5.4   47  345-394   261-309 (479)
301 TIGR01553 formate-DH-alph form  41.0      19 0.00049   15.6   2.1   68  278-358   233-305 (1043)
302 PRK02269 ribose-phosphate pyro  40.6      24 0.00061   15.0   4.2   42  422-463   267-310 (321)
303 cd03375 TPP_OGFOR Thiamine pyr  40.5      24 0.00061   15.0   6.1  148  144-306    12-179 (193)
304 cd01493 APPBP1_RUB Ubiquitin a  40.1      24 0.00062   14.9   3.2   52  378-436   359-410 (425)
305 PRK11798 ClpXP protease specif  40.0      24 0.00062   14.9   2.5   55   26-87     40-102 (140)
306 cd01521 RHOD_PspE2 Member of t  39.5      22 0.00057   15.2   2.2   37  335-373    61-97  (110)
307 pfam01451 LMWPc Low molecular   39.2      25 0.00064   14.8   2.7   91  353-461    45-139 (140)
308 TIGR03181 PDH_E1_alph_x pyruva  39.1      25 0.00064   14.8   4.5   99  198-309   130-243 (341)
309 PRK08978 acetolactate synthase  39.0      25 0.00064   14.8   7.5   26  159-185   199-224 (548)
310 cd01522 RHOD_1 Member of the R  38.8      25 0.00065   14.8   4.0   21  351-372    75-95  (117)
311 PRK08341 amidophosphoribosyltr  38.4      26 0.00066   14.7   2.5   69  367-438   304-381 (442)
312 PRK08134 O-acetylhomoserine am  37.9      26 0.00067   14.7   3.9   46  145-193    91-137 (433)
313 KOG3424 consensus               37.9      26 0.00067   14.7   3.1   56  143-199    37-101 (132)
314 PRK12309 transaldolase/EF-hand  37.9      17 0.00044   16.0   1.4   22  349-370   139-160 (391)
315 PTZ00145 phosphoribosylpyropho  37.8      26 0.00067   14.7   4.5  146  319-466   262-436 (443)
316 PRK11921 metallo-beta-lactamas  37.8      26 0.00067   14.7   4.4   47  345-394   257-305 (395)
317 PRK09754 phenylpropionate diox  37.7      26 0.00067   14.7   4.1   13  340-352   231-243 (400)
318 cd01856 YlqF YlqF.  Proteins o  37.7      26 0.00067   14.7   4.9   54  222-288     5-59  (171)
319 TIGR02124 hypE hydrogenase exp  37.5      17 0.00044   16.0   1.3   44  194-239    72-121 (345)
320 TIGR01318 gltD_gamma_fam gluta  37.5      26 0.00067   14.7   2.3   29  273-301   287-315 (480)
321 PRK09246 amidophosphoribosyltr  37.1      27 0.00069   14.6   3.4   88  348-438   303-405 (503)
322 TIGR02104 pulA_typeI pullulana  37.0      21 0.00055   15.3   1.8   33   34-66     12-44  (655)
323 TIGR02386 rpoC_TIGR DNA-direct  37.0      26 0.00066   14.7   2.2   24   52-78   1186-1209(1552)
324 PRK07178 acetyl-CoA carboxylas  36.9      27 0.00069   14.6   3.9   11  246-256   151-161 (471)
325 PRK08849 2-octaprenyl-3-methyl  36.9      27 0.00069   14.6   3.7   18  390-407   278-299 (384)
326 PRK07282 acetolactate synthase  36.6      27  0.0007   14.5   5.6   31  160-192   214-244 (566)
327 TIGR01822 2am3keto_CoA 2-amino  36.5      28  0.0007   14.5   2.5  122  267-407    88-218 (395)
328 PRK06460 hypothetical protein;  36.5      28  0.0007   14.5   5.1   46  145-193    72-118 (375)
329 cd06219 DHOD_e_trans_like1 FAD  36.4      28 0.00071   14.5   3.4   37  328-364    87-123 (248)
330 TIGR02637 RhaS rhamnose ABC tr  36.3      22 0.00056   15.3   1.7  120  144-287    68-196 (307)
331 COG0593 DnaA ATPase involved i  36.2      28 0.00071   14.5   4.8   75  221-300    88-164 (408)
332 cd06063 H2MP_Cyano-H2up This g  36.2      28 0.00071   14.5   4.9   28  366-397    32-59  (146)
333 PRK13984 putative oxidoreducta  35.8      28 0.00072   14.5   2.8   57  333-389   413-475 (604)
334 PRK06965 acetolactate synthase  35.6      28 0.00072   14.4   6.2   14  448-461   536-549 (587)
335 TIGR01000 bacteriocin_acc bact  35.5      13 0.00032   16.9   0.4   44   37-81     52-95  (476)
336 TIGR00107 deoD purine nucleosi  35.2      29 0.00074   14.4   2.3   57  339-399   122-181 (234)
337 PRK08199 acetolactate synthase  35.2      29 0.00074   14.4   7.7   35  157-193   199-233 (553)
338 PRK10310 galactitol-specific P  35.0      29 0.00074   14.4   2.7   32  342-373     5-40  (94)
339 PRK07504 O-succinylhomoserine   34.9      29 0.00074   14.4   4.3   49  145-196    92-141 (397)
340 PRK07847 amidophosphoribosyltr  34.9      29 0.00074   14.4   4.1   52  384-438   336-389 (489)
341 cd01129 PulE-GspE PulE/GspE Th  34.9      24 0.00062   14.9   1.8   36  249-290    83-120 (264)
342 COG1393 ArsC Arsenate reductas  34.7      29 0.00075   14.3   4.7   96  341-440     3-109 (117)
343 PRK12902 secA preprotein trans  34.1      30 0.00076   14.3   2.2   63  334-398   440-502 (946)
344 KOG2891 consensus               33.9      12  0.0003   17.2   0.0   55  179-233   180-245 (445)
345 cd00859 HisRS_anticodon HisRS   33.8      30 0.00077   14.3   5.3   32  340-371     3-35  (91)
346 COG0056 AtpA F0F1-type ATP syn  33.8      30 0.00077   14.3   7.0   19   25-43     27-45  (504)
347 PRK08979 acetolactate synthase  33.8      30 0.00077   14.2   7.3   14  448-461   520-533 (572)
348 COG0094 RplE Ribosomal protein  33.7     5.8 0.00015   19.3  -1.6  135  187-365    33-175 (180)
349 PRK03369 murD UDP-N-acetylmura  33.6      30 0.00078   14.2   2.9   16   19-34     27-42  (487)
350 cd02977 ArsC_family Arsenate R  33.6      31 0.00078   14.2   3.9   77  351-429    10-98  (105)
351 PRK06234 methionine gamma-lyas  33.5      31 0.00078   14.2   4.1   46  145-193    91-137 (399)
352 TIGR02746 TraC-F-type type-IV   33.0      12 0.00031   17.0  -0.0   40  381-420   724-765 (900)
353 PRK05793 amidophosphoribosyltr  32.7      32  0.0008   14.1   4.0   52  384-438   350-403 (472)
354 PRK10126 tyrosine phosphatase;  32.3      19 0.00048   15.7   0.9   92  354-463    47-142 (147)
355 PRK06388 amidophosphoribosyltr  32.2      32 0.00082   14.1   3.3   50  386-438   352-403 (474)
356 CHL00037 petA cytochrome f      31.9      26 0.00066   14.8   1.5   18  399-416   265-282 (320)
357 PRK08114 cystathionine beta-ly  31.9      32 0.00083   14.0   4.6   46  145-193    89-135 (395)
358 PRK12326 preprotein translocas  31.5      33 0.00084   14.0   4.5   61  334-398   434-494 (775)
359 PRK09124 pyruvate dehydrogenas  31.3      33 0.00084   14.0   6.0   30  160-193   205-234 (574)
360 CHL00122 secA preprotein trans  31.1      33 0.00085   14.0   2.8   63  334-398   420-482 (891)
361 PRK13344 spxA transcriptional   31.0      34 0.00085   13.9   7.0  101  351-455    11-123 (132)
362 PRK08525 amidophosphoribosyltr  30.9      34 0.00086   13.9   5.0   52  384-438   334-387 (445)
363 PRK05968 hypothetical protein;  30.8      34 0.00086   13.9   5.9   46  145-193    90-136 (389)
364 pfam03960 ArsC ArsC family. Th  30.5      34 0.00087   13.9   4.5   91  352-446     8-110 (111)
365 PRK06781 amidophosphoribosyltr  30.5      34 0.00087   13.9   4.1   52  384-438   342-395 (471)
366 TIGR02870 spore_II_D stage II   30.5      31  0.0008   14.1   1.8   35  334-368   307-343 (358)
367 COG0621 MiaB 2-methylthioadeni  30.3      34 0.00088   13.9   2.6   32  144-175   177-208 (437)
368 cd00115 LMWPc Substituted upda  30.1      35 0.00088   13.8   3.2  102  340-459    29-139 (141)
369 cd03418 GRX_GRXb_1_3_like Glut  30.1      35 0.00089   13.8   4.4   56  350-411    10-70  (75)
370 TIGR02070 mono_pep_trsgly mono  30.0      35 0.00089   13.8   3.4   11  276-286    64-74  (228)
371 PRK09123 amidophosphoribosyltr  29.9      35 0.00089   13.8   4.0   52  384-438   345-398 (480)
372 PRK12809 putative oxidoreducta  29.7      35  0.0009   13.8   2.9   49  337-387   450-500 (639)
373 PRK02812 ribose-phosphate pyro  29.6      35  0.0009   13.8   5.4   40  426-465   285-326 (331)
374 PRK12422 chromosomal replicati  29.5      35  0.0009   13.8   4.4  130  242-388   137-281 (455)
375 PRK08591 acetyl-CoA carboxylas  29.5      36 0.00091   13.8   4.3   57  245-320   151-212 (449)
376 PRK12346 transaldolase A; Prov  29.4      31 0.00078   14.2   1.5   22  349-370   134-155 (316)
377 pfam00354 Pentaxin Pentaxin fa  29.3      36 0.00091   13.7   2.1   47  158-204   121-167 (193)
378 pfam04430 DUF498 Protein of un  29.1      28  0.0007   14.5   1.3   37  337-373    52-89  (110)
379 PRK05269 transaldolase B; Prov  29.0      32 0.00081   14.1   1.6   22  349-370   135-156 (320)
380 PRK08527 acetolactate synthase  28.9      36 0.00092   13.7   9.3   15  448-462   514-528 (560)
381 COG2258 Uncharacterized protei  28.9      34 0.00087   13.9   1.7   10  336-345   152-161 (210)
382 PRK10046 dpiA two-component re  28.8      36 0.00093   13.7   4.3  103  266-392    17-123 (225)
383 cd00152 PTX Pentraxins are pla  28.7      37 0.00093   13.7   3.2   48  157-204   128-175 (201)
384 cd04914 ACT_AKi-DapG-BS_1 ACT   28.7      37 0.00093   13.7   2.8   24  350-373    13-36  (67)
385 PRK10638 glutaredoxin 3; Provi  28.5      37 0.00094   13.7   4.7   68  339-413     2-73  (83)
386 COG2521 Predicted archaeal met  28.3      37 0.00095   13.6   4.1  116  330-447   125-271 (287)
387 PRK08654 pyruvate carboxylase   28.2      37 0.00095   13.6   4.6   18  342-359   387-404 (497)
388 pfam06508 ExsB ExsB. This fami  28.2      25 0.00063   14.9   0.9   14  364-377    52-65  (137)
389 PRK01655 spxA transcriptional   28.2      37 0.00095   13.6   5.0  100  352-454    12-122 (131)
390 PRK11391 etp phosphotyrosine-p  28.0      38 0.00096   13.6   2.6   91  354-462    47-141 (144)
391 PRK01999 consensus              27.8      38 0.00097   13.6   4.4   25  337-364   211-239 (311)
392 PRK12778 putative bifunctional  27.8      38 0.00097   13.6   4.5   63  336-401   437-511 (760)
393 PRK07811 cystathionine gamma-s  27.8      38 0.00097   13.6   5.5   48  145-195    85-133 (386)
394 COG0813 DeoD Purine-nucleoside  27.7      29 0.00075   14.3   1.2   63  334-399   119-183 (236)
395 PRK08249 cystathionine gamma-s  27.6      38 0.00097   13.5   4.0   47  145-194    91-138 (398)
396 cd03036 ArsC_like Arsenate Red  26.9      39   0.001   13.5   4.5   86  351-439    10-108 (111)
397 cd03033 ArsC_15kD Arsenate Red  26.9      39   0.001   13.5   4.8   47  340-388     1-47  (113)
398 TIGR01317 GOGAT_sm_gam glutama  26.8      39   0.001   13.5   2.9   34  335-371   148-181 (517)
399 cd01491 Ube1_repeat1 Ubiquitin  26.8      39   0.001   13.4   3.4   28  402-436   244-271 (286)
400 PRK06698 bifunctional 5'-methy  26.8      22 0.00057   15.2   0.5   69  336-410   344-414 (459)
401 TIGR03406 FeS_long_SufT probab  26.7      39   0.001   13.4   2.2   25  364-388   145-169 (174)
402 PRK06725 acetolactate synthase  26.7      40   0.001   13.4   6.2   16  448-463   520-535 (570)
403 KOG2772 consensus               26.6      30 0.00076   14.3   1.1   51  349-400   147-213 (337)
404 KOG0398 consensus               26.6      40   0.001   13.4   1.9   88  187-302   125-218 (278)
405 pfam00456 Transketolase_N Tran  26.6      40   0.001   13.4   2.6   33  134-166    23-63  (333)
406 cd03027 GRX_DEP Glutaredoxin (  26.5      40   0.001   13.4   2.5   54  349-407    10-67  (73)
407 PTZ00071 40S ribosomal protein  26.5      40   0.001   13.4   3.3   51  143-196    39-101 (133)
408 KOG1549 consensus               26.2      40   0.001   13.4   3.8   22  139-161    56-77  (428)
409 PRK05819 deoD purine nucleosid  26.1      40   0.001   13.4   2.6   17  389-405   195-211 (235)
410 TIGR01977 am_tr_V_EF2568 cyste  26.1      40   0.001   13.4   2.9   15  445-459   367-381 (384)
411 PRK12831 putative oxidoreducta  26.0      41   0.001   13.4   2.9   34  338-374   281-314 (464)
412 TIGR00089 TIGR00089 RNA modifi  25.9      41   0.001   13.4   3.4   35  272-306    90-127 (455)
413 PRK06703 flavodoxin; Provision  25.8      41   0.001   13.3   4.3   52  348-406    14-65  (151)
414 TIGR01921 DAP-DH diaminopimela  25.8      41   0.001   13.3   2.0  112  269-406    18-129 (326)
415 PRK05321 nicotinate phosphorib  25.8      41   0.001   13.3   3.0  108  347-463   284-393 (400)
416 PRK05320 rhodanese superfamily  25.8      41   0.001   13.3   2.1   95  287-391   114-218 (257)
417 PRK07812 O-acetylhomoserine am  25.7      41  0.0011   13.3   4.4   50  145-197    96-146 (436)
418 TIGR03385 CoA_CoA_reduc CoA-di  25.6      41  0.0011   13.3   5.0   27  340-373   321-347 (427)
419 TIGR00511 aIF-2BII_fam transla  25.6      37 0.00095   13.6   1.4   24  277-300   116-139 (303)
420 cd03113 CTGs CTP synthetase (C  25.6      41  0.0011   13.3   3.8   41  350-390   187-227 (255)
421 COG0626 MetC Cystathionine bet  25.5      41  0.0011   13.3   2.0   53  145-200    90-143 (396)
422 cd05126 Mth938 Mth938 domain.   25.4      24 0.00062   14.9   0.4   39  333-371    53-93  (117)
423 KOG2012 consensus               25.4      35 0.00088   13.8   1.2   41  341-381   594-636 (1013)
424 cd05560 Xcc1710_like Xcc1710_l  25.3      35 0.00089   13.8   1.2   35  339-373    53-88  (109)
425 PRK10853 hypothetical protein;  25.2      42  0.0011   13.3   4.6   91  352-444    12-113 (118)
426 PRK07525 sulfoacetaldehyde ace  25.1      42  0.0011   13.2  12.0   13  196-208    52-64  (589)
427 TIGR01828 pyru_phos_dikin pyru  25.0      42  0.0011   13.2   2.2   10  340-349   817-826 (920)
428 PRK06714 S-adenosylhomocystein  25.0      26 0.00066   14.7   0.5   26  170-195    48-78  (236)
429 PRK00045 hemA glutamyl-tRNA re  24.9      43  0.0011   13.2   7.3   10  197-206    98-107 (429)
430 PRK05967 cystathionine beta-ly  24.6      43  0.0011   13.2   3.7   47  145-194    91-138 (392)
431 PRK12769 putative oxidoreducta  24.6      43  0.0011   13.2   2.8   53  334-388   464-518 (654)
432 COG4942 Membrane-bound metallo  24.6      35  0.0009   13.8   1.1   34  275-311   328-361 (420)
433 PRK11536 hypothetical protein;  24.5      38 0.00097   13.6   1.3   10  336-345   155-164 (223)
434 cd00957 Transaldolase_TalAB Tr  24.5      43  0.0011   13.2   1.6   22  349-370   133-154 (313)
435 PRK00037 hisS histidyl-tRNA sy  24.5      43  0.0011   13.2   4.8   58  339-398   324-382 (417)
436 PRK05990 precorrin-2 C(20)-met  24.3      44  0.0011   13.1   6.1   18  146-163    87-104 (241)
437 PRK07503 methionine gamma-lyas  24.2      44  0.0011   13.1   4.0   47  145-194    92-139 (403)
438 PRK07631 amidophosphoribosyltr  24.1      44  0.0011   13.1   4.0   51  385-438   343-395 (475)
439 cd02976 NrdH NrdH-redoxin (Nrd  24.1      44  0.0011   13.1   4.7   55  349-408     9-67  (73)
440 pfam00274 Glycolytic Fructose-  24.1      44  0.0011   13.1   4.5   30  193-222   143-182 (348)
441 COG0124 HisS Histidyl-tRNA syn  24.0      44  0.0011   13.1   3.1   60  336-399   333-395 (429)
442 COG0176 MipB Transaldolase [Ca  24.0      41   0.001   13.3   1.4   71  273-377    57-128 (239)
443 PRK07272 amidophosphoribosyltr  23.9      44  0.0011   13.1   4.7   97  339-438   284-397 (484)
444 TIGR02408 ectoine_ThpD ectoine  23.7      29 0.00073   14.4   0.5   53  263-322   126-182 (278)
445 PRK13374 purine nucleoside pho  23.7      45  0.0011   13.1   2.3   16  389-404   196-211 (233)
446 cd03032 ArsC_Spx Arsenate Redu  23.7      45  0.0011   13.1   4.4   94  351-447    11-115 (115)
447 PRK02304 adenine phosphoribosy  23.7      45  0.0011   13.1   5.0   43  335-377   110-157 (174)
448 CHL00149 odpA pyruvate dehydro  23.6      45  0.0011   13.1   3.7   22  226-255   175-196 (343)
449 COG0299 PurN Folate-dependent   23.6      45  0.0011   13.1   1.9  109  278-401    28-144 (200)
450 TIGR01829 AcAcCoA_reduct aceto  23.5      44  0.0011   13.1   1.5   63  349-414   158-221 (244)
451 COG3560 FMR2 Predicted oxidore  23.4      29 0.00074   14.4   0.5   35  277-311    69-104 (200)
452 PRK12906 secA preprotein trans  23.3      45  0.0012   13.0   2.7   61  334-398   436-496 (823)
453 pfam10740 DUF2529 Protein of u  23.2      46  0.0012   13.0   4.3   83  335-417    79-163 (172)
454 PRK10446 ribosomal protein S6   23.2      46  0.0012   13.0   2.1   24  347-373   227-250 (300)
455 COG1440 CelA Phosphotransferas  23.2      46  0.0012   13.0   2.9   48  340-387    48-96  (102)
456 PRK06940 short chain dehydroge  23.1      46  0.0012   13.0   2.0   28  348-375   178-205 (277)
457 cd00948 FBP_aldolase_I_a Fruct  22.9      46  0.0012   13.0   4.5   27  195-221   147-183 (330)
458 PRK13685 hypothetical protein;  22.8      46  0.0012   13.0   4.5   46  353-398   217-275 (326)
459 PRK08248 O-acetylhomoserine am  22.8      46  0.0012   12.9   3.1   48  145-195    91-139 (431)
460 pfam11793 FANCL_C FANCL C-term  22.8      44  0.0011   13.1   1.3   21  262-282    30-50  (70)
461 PRK07608 hypothetical protein;  22.8      46  0.0012   12.9   3.5   41  368-410   260-304 (389)
462 pfam01333 Apocytochr_F_C Apocy  22.7      47  0.0012   12.9   5.7   16   48-63      5-20  (118)
463 pfam00070 Pyr_redox Pyridine n  22.6      47  0.0012   12.9   4.4   38  341-381     2-41  (82)
464 cd01526 RHOD_ThiF Member of th  22.5      47  0.0012   12.9   1.7   26  348-373    80-105 (122)
465 cd00248 Mth938-like Mth938-lik  22.5      37 0.00096   13.6   1.0   35  340-374    54-89  (109)
466 pfam02196 RBD Raf-like Ras-bin  22.5      30 0.00077   14.3   0.5   48  346-397    19-69  (71)
467 PRK13358 protocatechuate 4,5-d  22.3      47  0.0012   12.9   1.9   66  337-417   169-240 (269)
468 PRK11678 putative chaperone; P  22.3      47  0.0012   12.9   2.2   24  439-462   372-395 (450)
469 PRK06111 acetyl-CoA carboxylas  22.2      48  0.0012   12.9   3.8   46  245-309   151-201 (449)
470 pfam06418 CTP_synth_N CTP synt  22.2      48  0.0012   12.9   3.8   48  352-399   189-240 (275)
471 PRK07671 cystathionine beta-ly  22.1      48  0.0012   12.9   3.9   45  145-193    77-122 (377)
472 TIGR02388 rpoC2_cyan DNA-direc  22.1      28 0.00072   14.5   0.2   17   20-36    860-876 (1252)
473 pfam12588 PSDC Phophatidylseri  22.1      48  0.0012   12.9   1.8   41  221-261    47-89  (140)
474 TIGR02624 rhamnu_1P_ald rhamnu  22.1      48  0.0012   12.9   1.9   34  146-185   193-226 (273)
475 PRK08462 biotin carboxylase; V  22.0      48  0.0012   12.8   3.9   76  244-343   152-233 (446)
476 PRK08776 cystathionine gamma-s  21.9      48  0.0012   12.8   4.0   56  334-397    95-152 (405)
477 PRK01506 consensus              21.8      49  0.0012   12.8   5.2  148  317-467   144-314 (317)
478 TIGR03010 sulf_tusC_dsrF sulfu  21.8      49  0.0012   12.8   1.8   34  134-167     8-42  (116)
479 PRK08133 O-succinylhomoserine   21.6      49  0.0012   12.8   3.6   56  334-397    96-153 (391)
480 PRK05714 2-octaprenyl-3-methyl  21.6      49  0.0012   12.8   3.9   38  339-379     3-42  (405)
481 PRK10569 NAD(P)H-dependent FMN  21.5      49  0.0013   12.8   6.3   70  347-422    14-93  (191)
482 PRK05613 O-acetylhomoserine am  21.4      50  0.0013   12.8   5.5   66  334-402   104-196 (437)
483 PRK07364 2-octaprenyl-6-methox  21.3      50  0.0013   12.7   3.1   29  340-371    19-47  (413)
484 pfam00899 ThiF ThiF family. Th  21.3      50  0.0013   12.7   1.7   43  403-452    10-52  (134)
485 PRK07349 amidophosphoribosyltr  21.1      50  0.0013   12.7   5.0   64  384-455   366-431 (495)
486 pfam00437 GSPII_E Type II/IV s  21.1      50  0.0013   12.7   1.8   20  146-165   198-217 (283)
487 TIGR01704 MTA/SAH-Nsdase MTA/S  20.9      42  0.0011   13.2   1.0   14  180-193    61-74  (229)
488 TIGR00337 PyrG CTP synthase; I  20.8      51  0.0013   12.7   2.8   34  354-387   201-234 (571)
489 PRK12438 hypothetical protein;  20.8      51  0.0013   12.7   3.6   99   55-153   862-960 (979)
490 pfam10011 DUF2254 Predicted me  20.8      51  0.0013   12.7   2.9   25   15-39    219-243 (369)
491 PRK08861 cystathionine gamma-s  20.7      51  0.0013   12.7   3.3   58  334-397    88-145 (388)
492 cd05125 Mth938_2P1-like Mth938  20.6      45  0.0011   13.0   1.0   32  340-371    56-88  (114)
493 COG3547 Transposase and inacti  20.6      47  0.0012   12.9   1.1   35  342-377    37-71  (303)
494 PRK10436 hypothetical protein;  20.6      51  0.0013   12.6   1.8   20  146-165   273-292 (461)
495 PRK06767 methionine gamma-lyas  20.5      51  0.0013   12.6   5.3   66  334-402    96-187 (386)
496 KOG2862 consensus               20.5      52  0.0013   12.6   7.0   85  333-420    87-172 (385)
497 PRK13366 protocatechuate 4,5-d  20.3      52  0.0013   12.6   2.0   46  130-188   154-199 (284)
498 PRK06128 oxidoreductase; Provi  20.3      52  0.0013   12.6   2.4   57  336-393    77-135 (300)
499 TIGR00364 TIGR00364 exsB prote  20.2      52  0.0013   12.6   1.5   44  335-378    19-69  (227)
500 TIGR01968 minD_bact septum sit  20.2      52  0.0013   12.6   1.6   44  159-228     2-46  (272)

No 1  
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00  E-value=0  Score=1111.98  Aligned_cols=462  Identities=69%  Similarity=1.061  Sum_probs=424.1

Q ss_pred             CCEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             97356678888881157898774178976258985999953753334317778689899823788513269758999437
Q gi|254780673|r    1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus         1 M~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      |+++|+||.|+++|+||+|++|+||+||.|+.||+|+||||||||||++|..+|+|.+||+++|++.|+|+++||+|.++
T Consensus         1 m~~~i~mpalsptm~~g~l~kw~~~~gd~v~~gd~~aeietdkatme~ea~deg~~~kilv~~g~~~v~vn~~ia~~~~~   80 (464)
T PRK11892          1 MAIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEE   80 (464)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEECC
T ss_conf             98442137789864577121464468975257866899750656689875067488889866777797557623796125


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             77721122223321234422233223332223322--1000000112333310000000000000012235544311365
Q gi|254780673|r   81 GETALDIDKMLLEKPDVAISPSSKNTTLVFSNEDN--DKVDHQKSKNDIQDSSFAHAPTSSITVREALRDAIAEEMRRDK  158 (467)
Q Consensus        81 ge~a~~~~~~~a~~~~aa~aaa~~~~s~~~~~a~~--~a~~~~~a~~~~~~~~~~~~~~~~~TvRea~~~a~~e~m~~d~  158 (467)
                      |++..+.............................  .....+.......+..+..+....+|+|||||+||+|+|++|+
T Consensus        81 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~reAlr~a~~eEM~rD~  160 (464)
T PRK11892         81 GESAADAGAAAAAAPAAAAEAAAPAAAAAEAAAAPAAAAPAAPAVEVAADPEIPAGTEMVTMTVREALRDAMAEEMRRDE  160 (464)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCC
T ss_conf             76533233344556555655555555554555554444555554443346566666642034699999999999985099


Q ss_pred             CEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             06999324344588665323647540811101166662789989999887188644566666789999999998788674
Q gi|254780673|r  159 DVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTR  238 (467)
Q Consensus       159 ~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~  238 (467)
                      +||+|||||+.|||+||+|+||++|||++|||||||||++|+|+|+|+|++|+|||+||||+||+++|||||+|++||++
T Consensus       161 ~Vfv~GEdVg~~gG~fkvT~GL~~~FG~~RV~DTPISE~gi~G~aiGaA~~GlRPIvEimf~dF~~~A~DQIiN~AAK~r  240 (464)
T PRK11892        161 DVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGVGVGAAMAGLKPIVEFMTFNFAMQAIDQIINSAAKTL  240 (464)
T ss_pred             CEEEECCCCCCCCCCCCCCHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf             88998040011487010342278775830420789995678899999997599847998603168999999998888864


Q ss_pred             HHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf             21177678887998302445764444332168876322031386652210001055565413783476402123333345
Q gi|254780673|r  239 YMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFE  318 (467)
Q Consensus       239 ~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~  318 (467)
                      ||||||+++|||||+|+|+++++|+|||||+++||+|+|||+|++||+++|+|+||++|||++|||+||||++||+++++
T Consensus       241 ymsgGq~~~PiViR~p~G~g~~~gaqHSQs~e~~fahiPGLkVv~Pstp~DAkGLLkaAIrd~nPVIflE~k~LY~~~~e  320 (464)
T PRK11892        241 YMSGGQMGCPIVFRGPNGAAARVGAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIRDPNPVIFLENEILYGQSFE  320 (464)
T ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCC
T ss_conf             04588614777998136666677766655767786217870799518999999999999738998899960210378402


Q ss_pred             CCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf             33466312144311444316874586025788888888753100467527973300685799999999987198999957
Q gi|254780673|r  319 VPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEE  398 (467)
Q Consensus       319 ~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee  398 (467)
                      +|+.++|.+||||++++|+|+|+|||+||.|++.|++||+.|+++||++||||||||+|||+++|++||+||||+|+|||
T Consensus       321 VP~~~d~~iPiGkA~V~reG~DvTIVsyG~mv~~aleAAe~La~eGIs~EVIDLRtL~PLD~etI~~SVkKTgRlvVVeE  400 (464)
T PRK11892        321 VPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLVTVEE  400 (464)
T ss_pred             CCCCCCCCCCCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEEC
T ss_conf             68754444566405896379978999757269999999999987399789997886788998999999998798999968


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             8876767899999999967764289829971777888889667656089989999999998502
Q gi|254780673|r  399 GYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVESICYK  462 (467)
Q Consensus       399 ~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~av~~v~~~  462 (467)
                      +|.+||+|+||+++|+|+||++||+||+||+++|+|+||+++||+.++|+.++|++++|+||||
T Consensus       401 ~~~~~GvgaEIaA~I~E~aF~~LdAPv~RV~~~D~PiP~a~~LE~~~lP~~~~Iv~Avk~V~y~  464 (464)
T PRK11892        401 GWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPYAANLEKLALPSVAEVVEAVKAVCYR  464 (464)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf             9888867999999999987986089848978898798889779977589999999999998549


No 2  
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00  E-value=0  Score=814.33  Aligned_cols=323  Identities=54%  Similarity=0.855  Sum_probs=317.8

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             00000012235544311365069993243445886653236475408111011666627899899998871886445666
Q gi|254780673|r  139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFM  218 (467)
Q Consensus       139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~  218 (467)
                      .++++||+|+||.++|++|++||+|||||+.+||+|++|+||++|||++|||||||+|++|+|+|+|||+.|+|||+|||
T Consensus         1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq   80 (324)
T COG0022           1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ   80 (324)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             95289999999999981299889982352302770120333887708540005765212168899999970896248986


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHH
Q ss_conf             66789999999998788674211776788879983024457644443321688763220313866522100010555654
Q gi|254780673|r  219 TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAI  298 (467)
Q Consensus       219 ~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai  298 (467)
                      |+||+++|+|||+|++||++|||||++.+|+|+|+|+|++.+.|.|||||+++||+|+|||+|++||||+|+||||++||
T Consensus        81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI  160 (324)
T COG0022          81 FADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI  160 (324)
T ss_pred             ECCHHHHHHHHHHHHHHHHHHHCCCCEECCEEEECCCCCCCCCHHHCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf             30136999999999999884104896436779974787777744433688899983389836981797577788999982


Q ss_pred             HCCCCEEEECCCCCCC-CCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             1378347640212333-334533466312144311444316874586025788888888753100467527973300685
Q gi|254780673|r  299 RDPNPVIFLENEILYG-SSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRP  377 (467)
Q Consensus       299 ~~~~Pvi~le~~~ly~-~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~P  377 (467)
                      |+||||+||||+.||+ .++++| .++|.+||||++++|+|+|+|||+||.|++.+++||+.|.++||++||||||||+|
T Consensus       161 rd~dPViflE~k~lY~~~~~eVP-~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~P  239 (324)
T COG0022         161 RDPDPVIFLEHKRLYRSFKGEVP-EEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSP  239 (324)
T ss_pred             CCCCCEEEEECHHHHCCCCCCCC-CCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             58998799732887565655789-87742215603367448856999851688999999999862698769972434676


Q ss_pred             CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf             79999999998719899995788767678999999999677642898299717778888896676560899899999999
Q gi|254780673|r  378 MDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVE  457 (467)
Q Consensus       378 ld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~av~  457 (467)
                      ||+++|++|++||||+|+|||+++++|+|+||++.++|+||++||+|++|++++|+|+||+..||+.++|+.++|+++++
T Consensus       240 lD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~av~  319 (324)
T COG0022         240 LDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAAVK  319 (324)
T ss_pred             CCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf             67999999988619689998256567728999999999999751274644347988989746677664799899999999


Q ss_pred             HHHCC
Q ss_conf             98502
Q gi|254780673|r  458 SICYK  462 (467)
Q Consensus       458 ~v~~~  462 (467)
                      ++++.
T Consensus       320 ~v~~~  324 (324)
T COG0022         320 KVLEF  324 (324)
T ss_pred             HHHHC
T ss_conf             99629


No 3  
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00  E-value=0  Score=787.14  Aligned_cols=331  Identities=39%  Similarity=0.645  Sum_probs=317.8

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHH
Q ss_conf             33310000000000000012235544311365069993243445886653236475408111011666627899899998
Q gi|254780673|r  127 IQDSSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGA  206 (467)
Q Consensus       127 ~~~~~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~  206 (467)
                      ..+.....+.+.++|++||||+||.++|++||+||+|||||+ +||+|++|+||++||||+||||||||||+++|+|+||
T Consensus        22 ~~~~~~~~g~~~~~t~~~Ai~~al~~~m~~d~~v~~~GeDv~-~GG~f~~T~gL~~~fGp~Rv~DtPIsE~~ivG~AvG~  100 (355)
T PTZ00182         22 RFGSEESSGNTKKMNLFQAINSALDIALSKDPKTVLFGEDVA-FGGVFRCSLGLLKKYGEQRVFNTPLCEQGIVGFAIGL  100 (355)
T ss_pred             CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHH
T ss_conf             999877788822657999999999999965998899847736-6766664025999858850031785588899999999


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             87188644566666789999999998788674211776788-87998302445764444332168876322031386652
Q gi|254780673|r  207 SFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITT-SIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPY  285 (467)
Q Consensus       207 A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~-p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~  285 (467)
                      |++|+|||+|+||.||+++|||||+|++||++||+||++++ |+|+|+|.|+++++|+|||||+++||+|+|||+|++||
T Consensus       101 A~~G~rPVvei~f~dFl~~A~DQIvn~aAk~~~~sgg~~~~~plviR~p~G~~~~~g~~HSqs~ea~f~~iPGLkVv~Ps  180 (355)
T PTZ00182        101 AAVGWTAIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGKLTIRSTWGAVGHGGLYHSQSPEAYFAHCAGLKIVVPS  180 (355)
T ss_pred             HHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECC
T ss_conf             97699359997568789999999999987775003870302428995378887778861017969998268997899349


Q ss_pred             CCHHCCCHHHHHHHCCCCEEEECCCCCCCCC-CCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCC-
Q ss_conf             2100010555654137834764021233333-45334663121443114443168745860257888888887531004-
Q gi|254780673|r  286 TASDAKGLLKAAIRDPNPVIFLENEILYGSS-FEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKN-  363 (467)
Q Consensus       286 ~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~-~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~-  363 (467)
                      |++|+|+||++|+++++||+|+|||+||+.. .++|. ++|.+||||++++|+|+|+|||+||.|+++|++||+.|+++ 
T Consensus       181 ~p~DAkgLl~sAi~d~~PVif~E~k~Ly~~~~~~vp~-~~~~iplGka~i~r~G~DvTIVa~G~mv~~al~AA~~L~~e~  259 (355)
T PTZ00182        181 DPYQAKGLLLACIRDPNPVIFFEPKILYRSAVEEVPP-DDYTLELGKAEVVKEGKDVTMVGYGSQVGVMKKAAELAEKEH  259 (355)
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCC-CCCCCCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHHCC
T ss_conf             9999999998761079858999654540567667885-445444666799961794799996568999999999997502


Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHH
Q ss_conf             67527973300685799999999987198999957887676789999999996776428982997177788888966765
Q gi|254780673|r  364 GIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEK  443 (467)
Q Consensus       364 gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~  443 (467)
                      ||++||||+|||+|||+++|++||+||||+|||||+|++||||+||+++|.|+||++||+||+||+++|+|+||+  ||+
T Consensus       260 GIs~EVIDlRtL~PlD~e~I~~SV~KTgrllvVeE~~~~~G~gsEI~a~i~E~~f~~L~ap~~Rv~~~d~P~P~~--lE~  337 (355)
T PTZ00182        260 GISVEVIDLQTILPWDRETVADSVKKTGRVIVTHEAPKTSGMGAEIAATIQERCFLSLEAPIKRVCGYDTPFPLV--HEP  337 (355)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHH--HHH
T ss_conf             997799954746899999999999987989999889988868999999999986875079868978898889866--786


Q ss_pred             HCCCCHHHHHHHHHHHHC
Q ss_conf             608998999999999850
Q gi|254780673|r  444 LALPNVDEIIESVESICY  461 (467)
Q Consensus       444 ~~~p~~~~I~~av~~v~~  461 (467)
                      .|+|+.++|+++++++++
T Consensus       338 ~~~P~~~~I~~av~~ll~  355 (355)
T PTZ00182        338 LYLPDELKLLEAIKQVVN  355 (355)
T ss_pred             HHCCCHHHHHHHHHHHHC
T ss_conf             719998999999999749


No 4  
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00  E-value=0  Score=764.38  Aligned_cols=325  Identities=70%  Similarity=1.127  Sum_probs=319.5

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             00000001223554431136506999324344588665323647540811101166662789989999887188644566
Q gi|254780673|r  138 SSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEF  217 (467)
Q Consensus       138 ~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~  217 (467)
                      .++|+|||+|+||.++|++||+||+|||||+++||+|++|+||++||||+||||||||||+|+|+|+|||++|+|||+++
T Consensus         2 ~~~~~~~ai~~al~~~~~~d~~v~~~geDv~~~~G~f~~t~gl~~~fgp~R~~d~gIaEq~~vg~A~GlA~~G~~Piv~~   81 (327)
T PRK09212          2 AQLTVREALRDAMREEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF   81 (327)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             82229999999999999559899998277664678035416899985875031677448999999998986799448997


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHH
Q ss_conf             66678999999999878867421177678887998302445764444332168876322031386652210001055565
Q gi|254780673|r  218 MTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAA  297 (467)
Q Consensus       218 ~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~a  297 (467)
                      |+++|+++|||||+|++||++||+||++++|+++|+|.|.++++|+||||++++||+|||||+|++|+|+.|+++||+++
T Consensus        82 ~~~~f~~ra~dQI~n~~ak~~~~~gg~~~vpvv~r~~~g~~~~~g~~Hs~~~~a~~~~iPgl~Vv~Ps~~~d~~~ll~~a  161 (327)
T PRK09212         82 MTFNFAMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYASWYAHIPGLKVVAPYFAADCKGLLKTA  161 (327)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf             55667778999999988875241278523018998177246787743331568896289998899648877889999998


Q ss_pred             HHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             41378347640212333334533466312144311444316874586025788888888753100467527973300685
Q gi|254780673|r  298 IRDPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRP  377 (467)
Q Consensus       298 i~~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~P  377 (467)
                      +++++||+|+||+++|+.+.++|+ +++.+|+||++++|+|+|+|||+||.|+++|++||+.|+++||+++|||+|||||
T Consensus       162 ~~~~~Pvi~~e~~~ly~~~~~v~~-~~~~~~iGKa~vlreG~DvTIva~G~mv~~al~AAe~L~~~GI~~eVIdl~tlkP  240 (327)
T PRK09212        162 IRDNNPVIFLENEILYGHSHEVPD-EEESIPFGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRP  240 (327)
T ss_pred             HHCCCCEEEEECCCCCCCCCCCCC-CCCCCCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             765998499824434687656776-5302337768999857974999864578999999999997599867885212789


Q ss_pred             CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf             79999999998719899995788767678999999999677642898299717778888896676560899899999999
Q gi|254780673|r  378 MDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVE  457 (467)
Q Consensus       378 ld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~av~  457 (467)
                      ||+++|++|++||+|+|||||++..||+||+|++.++|+||++|++|++||+++|+|+||+++||+.|||++++|+++++
T Consensus       241 lD~e~I~~sv~kT~~lv~veE~~~~gG~Gsevaa~l~e~~f~~L~~p~~rv~~~d~p~P~a~~LE~~~~p~~~~I~~av~  320 (327)
T PRK09212        241 LDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYAANLEKLALPSEEDIIEAVK  320 (327)
T ss_pred             CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999998619789996798788789999999999758645898679688980898997689884989999999999


Q ss_pred             HHHCCC
Q ss_conf             985020
Q gi|254780673|r  458 SICYKR  463 (467)
Q Consensus       458 ~v~~~~  463 (467)
                      ++|+||
T Consensus       321 ~~l~~~  326 (327)
T PRK09212        321 KVCYRS  326 (327)
T ss_pred             HHHCCC
T ss_conf             986657


No 5  
>KOG0524 consensus
Probab=100.00  E-value=0  Score=761.67  Aligned_cols=325  Identities=61%  Similarity=1.003  Sum_probs=320.8

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             00000000122355443113650699932434458866532364754081110116666278998999988718864456
Q gi|254780673|r  137 TSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE  216 (467)
Q Consensus       137 ~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~  216 (467)
                      .+.+|+|||+|.||.|+|+||++||+|||+|+.|+|+||+|+||++|||+.||+||||+|.+++|+|+|+|+.|+|||||
T Consensus        32 ~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~e  111 (359)
T KOG0524          32 AKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICE  111 (359)
T ss_pred             CEEEEHHHHHHHHHHHHHCCCCCEEEECHHHHHCCCEEEHHHHHHHHCCCCEEECCCCHHCCCCHHHHHHHHHCCCHHHH
T ss_conf             20254999999888987555984798222354217700020457886088453357421204311557677707611454


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHH
Q ss_conf             66667899999999987886742117767888799830244576444433216887632203138665221000105556
Q gi|254780673|r  217 FMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKA  296 (467)
Q Consensus       217 ~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~  296 (467)
                      ||+|+|.|||+|||+|++||++|||||++++|+|||||+|.+.+.|+||||+|.+||.+||||+|++|+++.|+||||++
T Consensus       112 fMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~f~~wy~siPGlkvvapysaedakGLlKa  191 (359)
T KOG0524         112 FMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQDFASWYGSIPGLKVVAPYSAEDAKGLLKA  191 (359)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEECCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHH
T ss_conf             40001489999999988877750037834025799689975430556651046787555998358635774555568888


Q ss_pred             HHHCCCCEEEECCCCCCCCCCCCCCC---CCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             54137834764021233333453346---631214431144431687458602578888888875310046752797330
Q gi|254780673|r  297 AIRDPNPVIFLENEILYGSSFEVPMV---DDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLR  373 (467)
Q Consensus       297 ai~~~~Pvi~le~~~ly~~~~~~p~~---~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r  373 (467)
                      |||++|||+||||.+||+.++++++.   +||.+|+||+++.|+|+|+||++|+.|+..|++||+.|.++|++|||||||
T Consensus       192 AIRd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVInlr  271 (359)
T KOG0524         192 AIRDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVINLR  271 (359)
T ss_pred             HCCCCCCEEEEECHHHCCCCCCCCHHHCCCCEEEECCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             60589976998411012887568734457550535450236615884699985025899999999998669880367410


Q ss_pred             CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHH
Q ss_conf             06857999999999871989999578876767899999999967764289829971777888889667656089989999
Q gi|254780673|r  374 TIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEII  453 (467)
Q Consensus       374 ~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~  453 (467)
                      +|+|||.++|.+|++||+|+++||++|..+|+|+||.+.|+|++|+|||+|++|+++.|+|+||+..||+..+|+..+|+
T Consensus       272 SirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~~lE~~a~p~~~~iV  351 (359)
T KOG0524         272 SIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAKTLEDWAVPQPADIV  351 (359)
T ss_pred             CCCCCCHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHCCCCHHHHH
T ss_conf             24765589999887650538998345666660399999998877755125355322788898530006762289879999


Q ss_pred             HHHHHHHC
Q ss_conf             99999850
Q gi|254780673|r  454 ESVESICY  461 (467)
Q Consensus       454 ~av~~v~~  461 (467)
                      .|++++|+
T Consensus       352 ~Avk~~~~  359 (359)
T KOG0524         352 TAVKKLCN  359 (359)
T ss_pred             HHHHHHHC
T ss_conf             99998519


No 6  
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00  E-value=0  Score=755.11  Aligned_cols=323  Identities=41%  Similarity=0.701  Sum_probs=316.6

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             00000001223554431136506999324344588665323647540811101166662789989999887188644566
Q gi|254780673|r  138 SSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEF  217 (467)
Q Consensus       138 ~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~  217 (467)
                      ..++++||+|+||.++|++||+||+|||||+++||+|++|+||++|||++||||||||||+++|+|+|||++|+|||+++
T Consensus         2 ~~~~~~~ai~~al~~~m~~d~~v~~~GeDv~~~gg~f~~t~gl~~kfg~~Rv~dtpIaE~~~vG~A~GlA~~G~rPiv~~   81 (326)
T CHL00144          2 SENFLFEALREAIDEEMARDPRVAVIGEDVGHYGGSYKVTKDLHPKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPVVEG   81 (326)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             63379999999999999759988998377675678067506799873855100677357889999998874799799997


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHH
Q ss_conf             66678999999999878867421177678887998302445764444332168876322031386652210001055565
Q gi|254780673|r  218 MTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAA  297 (467)
Q Consensus       218 ~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~a  297 (467)
                      |+.+|+++|||||+|++||++||+||++++|+++|+|+|.++++|+||||++++||+|||||+|++|+|+.|+++||++|
T Consensus        82 ~~~~F~~~a~dQi~n~aa~~~~~~gg~~~vplvir~~~g~g~~~g~~Hs~~~~a~~~~iPgl~Vv~Ps~~~da~~ll~~a  161 (326)
T CHL00144         82 MNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQAVPGLQIVACSTPYNAKGLLKSA  161 (326)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHH
T ss_conf             46778899999999998898603478613579998477767887541244568898338995899569878889999999


Q ss_pred             HHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             41378347640212333334533466312144311444316874586025788888888753100467527973300685
Q gi|254780673|r  298 IRDPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRP  377 (467)
Q Consensus       298 i~~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~P  377 (467)
                      +++++||+|+||+++|+.+.++|+ ++|.+|+||++++|+|+|+|||+||.|++.|++||+.|+++||+|+|||+|||+|
T Consensus       162 i~~~~Pv~~~e~~~ly~~~~~vp~-~~~~~~~Gka~v~r~G~DvTIVa~G~mv~~al~Aae~L~~~gI~~eVIDlrtl~P  240 (326)
T CHL00144        162 IRSDNPVLFFEHVLLYNLKEEIPD-GEYLLPLEKAELVRDGEDITILTYSRMRHHVIQAVKLLVTKGYDPEVIDLISLKP  240 (326)
T ss_pred             HHCCCCEEEEECCCCCCCCCCCCC-CCCCCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             972898189953455787644776-5566546768999727987999306779999999999997799768986045799


Q ss_pred             CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf             79999999998719899995788767678999999999677642898299717778888896676560899899999999
Q gi|254780673|r  378 MDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVE  457 (467)
Q Consensus       378 ld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~av~  457 (467)
                      ||+++|++|++||+|+|||||+|..||||+||+++|+|++|++|++|++||+.+|+|+||++.||+.++|++++|++++|
T Consensus       241 lD~e~I~~sv~kT~rlv~veE~~~~gG~Gsei~a~i~e~~f~~l~~p~~Ri~~~d~p~P~s~~lE~~~~p~~~~I~~av~  320 (326)
T CHL00144        241 LDMTTISTSIKKTHKVLIVEECMKTGGIGAELLALINENLFDELDAPIFRLSSQDVPTPYNGSLEEATVIQPEQIIEAVE  320 (326)
T ss_pred             CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999998549899997699889789999999999758655999789688980898997799875999999999999


Q ss_pred             HHHC
Q ss_conf             9850
Q gi|254780673|r  458 SICY  461 (467)
Q Consensus       458 ~v~~  461 (467)
                      ++++
T Consensus       321 ~l~~  324 (326)
T CHL00144        321 QITN  324 (326)
T ss_pred             HHHC
T ss_conf             9862


No 7  
>KOG0525 consensus
Probab=100.00  E-value=0  Score=571.99  Aligned_cols=324  Identities=39%  Similarity=0.666  Sum_probs=307.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             00000000000122355443113650699932434458866532364754081110116666278998999988718864
Q gi|254780673|r  134 HAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKP  213 (467)
Q Consensus       134 ~~~~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~P  213 (467)
                      .+....+.+-+++|.||.-.|+.||+.++|||||+ +||+|++|.||.+|||.+||||||++||+|+|+++|+|..|-+.
T Consensus        35 ~ge~~~mnl~qsvn~al~ial~tdp~a~vfgedv~-fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~a  113 (362)
T KOG0525          35 AGEKKKMNLYQSVNQALHIALETDPRAVVFGEDVA-FGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATA  113 (362)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-CCEEEEEECCHHHHHCCCCCCCCCHHHCCCCEECHHHHHCCCCE
T ss_conf             55555602999999999877514983278324542-24079851006777375630267202215420013125406615


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCC
Q ss_conf             45666667899999999987886742117767888-79983024457644443321688763220313866522100010
Q gi|254780673|r  214 IVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTS-IVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKG  292 (467)
Q Consensus       214 iv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p-~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~  292 (467)
                      |+|+||.||+..|||||+|+|||++|+||.|+++. +++|.|-|+.+..|-+||||.+++|.|+||++|+.|.+|.++|+
T Consensus       114 iaeiqfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprsp~qakg  193 (362)
T KOG0525         114 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRSPRQAKG  193 (362)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHEECCCCCEEEECCCCCHHHC
T ss_conf             88885022122558999878776252357844567657745544245553015688235300489836982489504303


Q ss_pred             HHHHHHHCCCCEEEECCCCCCCCCC-CCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHH-HCCCCCEEEE
Q ss_conf             5556541378347640212333334-5334663121443114443168745860257888888887531-0046752797
Q gi|254780673|r  293 LLKAAIRDPNPVIFLENEILYGSSF-EVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIEL-EKNGIDAELI  370 (467)
Q Consensus       293 ll~~ai~~~~Pvi~le~~~ly~~~~-~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L-~~~gi~~~vi  370 (467)
                      ||.++||+|||++|+|+||||++.. ++|. +||.+|++.++++|+|+|+|+++||..++..+++|-.- ++.||+||||
T Consensus       194 lllscirdpnp~iffepk~lyr~a~edvp~-~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevi  272 (362)
T KOG0525         194 LLLSCIRDPNPCIFFEPKILYRQAVEDVPE-GDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVI  272 (362)
T ss_pred             EEEEECCCCCCEEEECHHHHHHHHHHHCCC-CCCCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             142010699965784528999876630787-7733432177775237843899711046899999876677529846997


Q ss_pred             ECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHH
Q ss_conf             33006857999999999871989999578876767899999999967764289829971777888889667656089989
Q gi|254780673|r  371 DLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVD  450 (467)
Q Consensus       371 d~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~  450 (467)
                      ||++|-|+|.+++.+||+|||||++-+|...+||||+||++.+.|+||.+|.+|+-|+|+.|+|.|.-  .|-+|+|++.
T Consensus       273 dlkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~v--fepfy~ptk~  350 (362)
T KOG0525         273 DLKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPHV--FEPFYMPTKN  350 (362)
T ss_pred             EEECCCCCCHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC--CCCCCCCCHH
T ss_conf             30001575388899988741617886347756752188899999988760457366640689988523--4563267276


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999850
Q gi|254780673|r  451 EIIESVESICY  461 (467)
Q Consensus       451 ~I~~av~~v~~  461 (467)
                      +|++|+|+..+
T Consensus       351 ki~daik~~vn  361 (362)
T KOG0525         351 KILDAIKKTVN  361 (362)
T ss_pred             HHHHHHHHHCC
T ss_conf             89999997616


No 8  
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00  E-value=0  Score=404.93  Aligned_cols=300  Identities=27%  Similarity=0.377  Sum_probs=258.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             00000001223554431136506999324344588665323647540811101166662789989999887188644566
Q gi|254780673|r  138 SSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEF  217 (467)
Q Consensus       138 ~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~  217 (467)
                      ...++|+++.+.+.++-++|++++++--|..++..    |..|.++| |+|+||+||+||+|+|+|+|||++|++|++. 
T Consensus         5 ~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~----~~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~-   78 (312)
T COG3958           5 NTESLRKVYGETLAELGRKNSDIVVLDADLSSSTK----TGYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVS-   78 (312)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----HHHHHHHC-CHHHEECCHHHHHHHHHHHHHHHCCCCCEEE-
T ss_conf             20678999999999987338997999645313411----05788867-5451442467888999998887448874364-


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-CCCC-CCCCHHH-HHHHHHHHHHHCCCEEEEEECCHHCCCH
Q ss_conf             6667899-999999987886742117767888799830-2445-7644443-3216887632203138665221000105
Q gi|254780673|r  218 MTFNFAM-QAIDQIINSAAKTRYMSGGQITTSIVFRGP-NGAA-ARVAAQH-SQCYAAWYSHVPGLKVVIPYTASDAKGL  293 (467)
Q Consensus       218 ~~~~f~~-~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p-~G~~-~~~g~~H-s~~~~~~~~~iPgl~V~~P~~~~d~~~l  293 (467)
                      -|.-|++ ||||||.|+.+-        .++|+.+.+. .|.. +.+|++| +-...++|+.+|||+|+.|+|+.+.+.+
T Consensus        79 tfa~F~s~Ra~EQir~~iay--------~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i  150 (312)
T COG3958          79 TFAAFLSRRAWEQIRNSIAY--------NNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAI  150 (312)
T ss_pred             CHHHHHHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHH
T ss_conf             15899877799999998610--------2697389992587425888864116789999860788558704858999999


Q ss_pred             HHHHHHCCCCEEEECCCCCCCC-CCCCCCCC-CEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             5565413783476402123333-34533466-312144311444316874586025788888888753100467527973
Q gi|254780673|r  294 LKAAIRDPNPVIFLENEILYGS-SFEVPMVD-DLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELID  371 (467)
Q Consensus       294 l~~ai~~~~Pvi~le~~~ly~~-~~~~p~~~-~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid  371 (467)
                      +.++.++++|+++     +.++ +++++..+ +|.+.+||++++|+|+|+|||+.|.|+..|++||+.|+++||++.|||
T Consensus       151 ~~~~~~~~GP~Y~-----Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~  225 (312)
T COG3958         151 LDQIADYKGPVYM-----RLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVIN  225 (312)
T ss_pred             HHHHHHCCCCEEE-----EECCCCCCCEECCCCCEEECCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9999860797799-----80577888503378725733634676417726999517166999999999986698879986


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC--CCHHHHHHCCCCH
Q ss_conf             30068579999999998719899995788767678999999999677642898299717778888--8966765608998
Q gi|254780673|r  372 LRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMP--YAANLEKLALPNV  449 (467)
Q Consensus       372 ~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P--~~~~le~~~~p~~  449 (467)
                      |.||||+|.++|++..+||+++||+|||...||+||.|++.++|++    ..|.+||+.+|+.--  .+..|-++|-.+.
T Consensus       226 m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~  301 (312)
T COG3958         226 MFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDP  301 (312)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCEEEEECCEEECCHHHHHHHHHHHCC----CCCEEEECCCCHHCCCCCHHHHHHHHCCCH
T ss_conf             4766778789999987425838998633223562699999998619----963688327731212235699999819999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999985
Q gi|254780673|r  450 DEIIESVESIC  460 (467)
Q Consensus       450 ~~I~~av~~v~  460 (467)
                      ++|++.+++.|
T Consensus       302 ~~I~~~v~~~~  312 (312)
T COG3958         302 ESIAARVLELL  312 (312)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999659


No 9  
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00  E-value=0  Score=387.47  Aligned_cols=300  Identities=22%  Similarity=0.358  Sum_probs=258.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH-HH
Q ss_conf             00000122355443113650699932434458866532364754081110116666278998999988718864456-66
Q gi|254780673|r  140 ITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE-FM  218 (467)
Q Consensus       140 ~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~-~~  218 (467)
                      .+.-+...+.|.+.+++|++++.+---..  +| ++. ..|.++| |+|+||++|+||+.+.+|+|||+.|+||||. |+
T Consensus       316 ~sys~vf~~~L~~~a~~d~~ivaITaAM~--~g-tGL-~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYS  390 (627)
T COG1154         316 PSYTKVFGDTLCELAAKDEKIVAITAAMP--EG-TGL-VKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYS  390 (627)
T ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEECCCC--CC-CCH-HHHHHHC-CHHHEEHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             88789999999999841897599835777--88-776-9998858-4533302356888999999998579998899923


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE---EEECCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCHH
Q ss_conf             667899999999987886742117767888799---830244576444433216-8876322031386652210001055
Q gi|254780673|r  219 TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF---RGPNGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGLL  294 (467)
Q Consensus       219 ~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~---r~p~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~ll  294 (467)
                      |  |+.|||||++|+.|.        +++|++|   |+  |..+.+|++|...| .||+++||||+|++|+|..+++.||
T Consensus       391 T--FLQRAYDQliHDvai--------qnLPV~faIDRA--GivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml  458 (627)
T COG1154         391 T--FLQRAYDQLIHDVAI--------QNLPVTFAIDRA--GIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQML  458 (627)
T ss_pred             H--HHHHHHHHHHHHHHH--------CCCCEEEEEECC--CCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHH
T ss_conf             7--787778889999886--------069859998467--6458999865518889987348985786679999999999


Q ss_pred             HHHHHCC-CCEEEECCCCCCCCC--CCCCCCC-CEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             5654137-834764021233333--4533466-31214431144431687458602578888888875310046752797
Q gi|254780673|r  295 KAAIRDP-NPVIFLENEILYGSS--FEVPMVD-DLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELI  370 (467)
Q Consensus       295 ~~ai~~~-~Pvi~le~~~ly~~~--~~~p~~~-~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vi  370 (467)
                      .+++..+ +|+.     ++|.+.  ..++... -..+++||++++|+|+|+.|+++|.|+..|+++|+.|.+.||+|+||
T Consensus       459 ~ta~~~~~gP~A-----iRyPrg~~~~~~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVv  533 (627)
T COG1154         459 YTALAQDDGPVA-----IRYPRGNGVGVILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVV  533 (627)
T ss_pred             HHHHHCCCCCEE-----EEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             999864788748-----994688888877665555134653688725880899944222689999999998639873788


Q ss_pred             ECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCH--HHHHHCCCC
Q ss_conf             330068579999999998719899995788767678999999999677642898299717778888896--676560899
Q gi|254780673|r  371 DLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAA--NLEKLALPN  448 (467)
Q Consensus       371 d~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~--~le~~~~p~  448 (467)
                      |+||+||||.+.+.+..+++..+||+||+...|||||.|++.+.++++   ..|+.+++.+|..+|.+.  .+.+.+-.+
T Consensus       534 d~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gLd  610 (627)
T COG1154         534 DPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGLD  610 (627)
T ss_pred             CCEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCC---CCCEEEECCCHHHHCCCCHHHHHHHCCCC
T ss_conf             671267779999999986568699996373146378999999996499---87337713876764369999999883999


Q ss_pred             HHHHHHHHHHHHCCCC
Q ss_conf             8999999999850200
Q gi|254780673|r  449 VDEIIESVESICYKRK  464 (467)
Q Consensus       449 ~~~I~~av~~v~~~~~  464 (467)
                      .+.|++.+.+.+..++
T Consensus       611 ~~~i~~~i~~~l~~~~  626 (627)
T COG1154         611 AEGIARRILEWLKARS  626 (627)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             8999999999875406


No 10 
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00  E-value=0  Score=375.40  Aligned_cols=301  Identities=22%  Similarity=0.350  Sum_probs=251.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH-H
Q ss_conf             000000122355443113650699932434458866532364754081110116666278998999988718864456-6
Q gi|254780673|r  139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE-F  217 (467)
Q Consensus       139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~-~  217 (467)
                      ..+..++..++|.+.+++|++++.+--|...  |. + ...|.++| |+|+||+||+||+++++|+|||+.|+||++. |
T Consensus       268 ~~~~~~~f~~~L~~l~~~~~~iv~itaa~~~--~t-~-l~~f~~~~-P~R~~~~GIaEqhav~~aaGlA~~G~~Pf~~~~  342 (576)
T PRK05444        268 KPSYTKVFGETLCELAEKDPKIVAITAAMPE--GT-G-LDEFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIY  342 (576)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEHHHCCC--CC-C-CCHHHHHC-CCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             5069999999999998743020030542147--86-6-44367758-763411574577799997458656998668882


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-CCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCHHH
Q ss_conf             6667899999999987886742117767888799830-244576444433216-88763220313866522100010555
Q gi|254780673|r  218 MTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP-NGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGLLK  295 (467)
Q Consensus       218 ~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p-~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~ll~  295 (467)
                      .  .|+.||||||+|++|.        +++||+|.+- .|..+.+||||..-. .+++++||||+|+.|+|+.|++.+++
T Consensus       343 s--tFl~Ra~dQi~~d~al--------~~l~V~~v~d~~GlvGeDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~~~~  412 (576)
T PRK05444        343 S--TFLQRAYDQVIHDVAL--------QNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLY  412 (576)
T ss_pred             C--HHHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf             1--2877769999876541--------27976899607866789985100379999852699818996299999999999


Q ss_pred             HHHHC-CCCEEEECCCCCCCCC--CCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             65413-7834764021233333--45334663121443114443168745860257888888887531004675279733
Q gi|254780673|r  296 AAIRD-PNPVIFLENEILYGSS--FEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDL  372 (467)
Q Consensus       296 ~ai~~-~~Pvi~le~~~ly~~~--~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~  372 (467)
                      .|++. ++|+++     +|.|.  ..++..+...+++||+.++|+|+|++||++|+++..|++|+++|+++||+++|||+
T Consensus       413 ~Al~~~~gP~~i-----rl~R~~~~~~~~~~~~~~~~Gk~~vl~~G~dv~IiatGs~v~~Al~Aa~~L~~~Gi~~~VVs~  487 (576)
T PRK05444        413 TALAYDDGPTAI-----RYPRGSGVGVELPELEPLPIGKGEVLREGSDVAILAFGTMLAEALEAAERLAAEGISATVVDA  487 (576)
T ss_pred             HHHHCCCCCEEE-----EECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             998578998899-----942788888787765434465089996289789995387999999999999856998799955


Q ss_pred             CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHCCCCHH
Q ss_conf             006857999999999871989999578876767899999999967764289829971777888889--667656089989
Q gi|254780673|r  373 RTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYA--ANLEKLALPNVD  450 (467)
Q Consensus       373 r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~--~~le~~~~p~~~  450 (467)
                      +|+||||.+.+.+.+++++++||+||++..||+|+.|++.+.+++.. -..++.+++.+|....++  ..|-+.|-.+++
T Consensus       488 ~~ikPlD~e~l~~~~~~~~~ivtvEeh~~~GGlGs~v~e~l~~~g~~-~~~~~~~iGi~D~F~~sG~~~~L~~~~Gl~~e  566 (576)
T PRK05444        488 RFVKPLDEELLLELAAKHELLVTVEENAIMGGFGSAVLEFLAEHGLL-KPVKVLNLGLPDEFIDHGSREELLAELGLDAE  566 (576)
T ss_pred             CCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCCCCHHHHHHHHCCCHH
T ss_conf             87788799999999954897999938975765899999999975997-79746999848836688999999999693999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999985
Q gi|254780673|r  451 EIIESVESIC  460 (467)
Q Consensus       451 ~I~~av~~v~  460 (467)
                      .|+++|++.+
T Consensus       567 ~I~~kI~~~L  576 (576)
T PRK05444        567 GIARRILAWL  576 (576)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999659


No 11 
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00  E-value=0  Score=393.82  Aligned_cols=167  Identities=59%  Similarity=0.992  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             01223554431136506999324344588665323647540811101166662789989999887188644566666789
Q gi|254780673|r  144 EALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFA  223 (467)
Q Consensus       144 ea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~  223 (467)
                      ||+|+||.|+|++||++++|||||+++||+|++|+||++||||+||||+||+||+++|+|+|||++|+|||+++++.+|+
T Consensus         1 eAi~~al~~~~~~d~~v~~~g~dv~~~~g~~~~t~gl~~~fgp~R~~d~gIaE~~~vg~a~GlAl~G~~Pvv~~~~~~Fl   80 (167)
T cd07036           1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFA   80 (167)
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEHHHH
T ss_conf             97999999999769899999578374778057747999985766323799688999999999998599379886225554


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCC
Q ss_conf             99999999878867421177678887998302445764444332168876322031386652210001055565413783
Q gi|254780673|r  224 MQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNP  303 (467)
Q Consensus       224 ~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~P  303 (467)
                      ++|+|||+|+++|++|||+|++++|+++|++.|+++++|++|||++++||++||||+|++|+|+.|+++||++|+++++|
T Consensus        81 ~~a~dQi~n~~a~~~~~s~g~~~~pvvir~~~g~~~~~g~~Hs~~~~a~~~~iPgl~V~~Ps~~~d~~~ll~~a~~~~~P  160 (167)
T cd07036          81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDDP  160 (167)
T ss_pred             HHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf             00599999775676120389405888999606677674530036879998079996899729999999999999839997


Q ss_pred             EEEECCC
Q ss_conf             4764021
Q gi|254780673|r  304 VIFLENE  310 (467)
Q Consensus       304 vi~le~~  310 (467)
                      |+|+|||
T Consensus       161 v~~~E~k  167 (167)
T cd07036         161 VIFLEHK  167 (167)
T ss_pred             EEEEECC
T ss_conf             8999339


No 12 
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00  E-value=0  Score=364.61  Aligned_cols=298  Identities=19%  Similarity=0.245  Sum_probs=249.6

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             00000012235544311365069993243445886653236475408111011666627899899998871886445666
Q gi|254780673|r  139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFM  218 (467)
Q Consensus       139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~  218 (467)
                      ..+..++..+++.+.++.|++++.+..|...   .++ ...+.++| |+|+||+||+||+|+++|+|||+.|++|++. .
T Consensus       277 ~~~~~~~~~~~l~~~~~~~~~ivai~a~~~~---~~g-l~~f~~~~-P~R~i~~GIaEq~mv~~a~GlA~~G~~P~~~-~  350 (581)
T PRK12315        277 GESYSSVVLDYLLKKIEEGKPVVAINAAIPG---VFG-LKEFRKKY-PDRYVDVGIAEQHSVAFASGMAAAGARPVIF-V  350 (581)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEECCCCCC---CCC-CCHHHHHC-CCCEEECCHHHHHHHHHHHHHHHCCCEEEEE-E
T ss_conf             5698999999999998746441542135787---657-53132418-5016751608889999987897579964688-8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHH-HHHHHHHHCCCEEEEEECCHHCCCHHHHH
Q ss_conf             66789999999998788674211776788879983024457644443321-68876322031386652210001055565
Q gi|254780673|r  219 TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQC-YAAWYSHVPGLKVVIPYTASDAKGLLKAA  297 (467)
Q Consensus       219 ~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~-~~~~~~~iPgl~V~~P~~~~d~~~ll~~a  297 (467)
                      |..|+.||||||++++|-        +++|+++..-.+..++.||||..- ..++|+.||||+|++|+|+.+++.+++.|
T Consensus       351 fstFl~ra~dqi~~dial--------~~lpv~~~~~~~~igedGpTHq~iedia~lR~iPN~~V~~PaD~~E~~~~~~~A  422 (581)
T PRK12315        351 NSTFLQRAYDQLSHDLAI--------NNNPAVMIVFGGSISGNSVTHQGSFDIAMISNIPNLVYLAPTSKEELIAMLEWA  422 (581)
T ss_pred             ECHHHHHHHHHHHHHHHH--------HCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH
T ss_conf             442331468899899998--------369989999617778999875147788997256883899319999999999999


Q ss_pred             HH-CCCCEEEECCCCCCCCCCCCCCC--CCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEECC
Q ss_conf             41-37834764021233333453346--63121443114443168745860257888888887531004-6752797330
Q gi|254780673|r  298 IR-DPNPVIFLENEILYGSSFEVPMV--DDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKN-GIDAELIDLR  373 (467)
Q Consensus       298 i~-~~~Pvi~le~~~ly~~~~~~p~~--~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid~r  373 (467)
                      +. .++|+++     +|.+. .+|..  .+..+..|+++++++|+|++|+++|+|+..|++|++.|+++ ||+++|||+|
T Consensus       423 l~~~~gP~~i-----R~pr~-~~~~~~~~~~~~~~g~~~v~~~G~dv~Iia~Gs~v~~A~~aa~~L~~~~gI~~~Vi~~~  496 (581)
T PRK12315        423 LTQHEHPVAI-----RVPEH-VLESGPTVDTDYSTLNYEVAKAGEKVAILALGDFYELGEKVAKKLKEKLGIDATLINPK  496 (581)
T ss_pred             HHCCCCCEEE-----EECCC-CCCCCCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             9716995899-----93787-67778765555554418997558988999860778999999999875129987999577


Q ss_pred             CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHCCCCHHH
Q ss_conf             06857999999999871989999578876767899999999967764289829971777888889--6676560899899
Q gi|254780673|r  374 TIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYA--ANLEKLALPNVDE  451 (467)
Q Consensus       374 ~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~--~~le~~~~p~~~~  451 (467)
                      |+||||.+++.+..++++.+||+||++..||||+.|++.+.+++     .++.+++.+|...+.+  ..|-++|-.+++.
T Consensus       497 ~vkPlD~~~l~~~~~~~~~ivtvEeh~~~GGlGs~v~~~l~~~~-----~~v~~~Gi~d~F~~sg~~~el~~~~Glt~e~  571 (581)
T PRK12315        497 FITGLDEELLENLKEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFADRVPVEELYKRYHLTPEQ  571 (581)
T ss_pred             CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCC-----CEEEEEECCCCCCCCCCHHHHHHHHCCCHHH
T ss_conf             24887999999998249879999279766458999999997679-----9089983588676889999999994969999


Q ss_pred             HHHHHHHHHC
Q ss_conf             9999999850
Q gi|254780673|r  452 IIESVESICY  461 (467)
Q Consensus       452 I~~av~~v~~  461 (467)
                      |+++|+++++
T Consensus       572 I~~~I~~~Lk  581 (581)
T PRK12315        572 IVEDILSVLK  581 (581)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999859


No 13 
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00  E-value=0  Score=342.54  Aligned_cols=308  Identities=23%  Similarity=0.331  Sum_probs=253.9

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             00000000122355443113650699932434458866532364754081110116666278998999988718864456
Q gi|254780673|r  137 TSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE  216 (467)
Q Consensus       137 ~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~  216 (467)
                      ....+.+++..++|.+.+++|++++....|.....|    +..+.++| |+|+||+||+||+|++++.|||..|++|++.
T Consensus       316 ~~~~~~~~~~g~~l~~la~~~~~lv~~sadl~~stg----l~~f~~~~-p~R~~~~GIrE~~m~a~a~GlA~~G~~P~~~  390 (642)
T PRK12571        316 PNAPSYTSVFGDELVKEAEEDSDIVAITAAMPSGTG----LDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA  390 (642)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC----CCCHHCCC-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             876229999999999999741101020003677777----61010158-8655552455678999963476469962899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCHH
Q ss_conf             6666789999999998788674211776788879983-0244576444433216-8876322031386652210001055
Q gi|254780673|r  217 FMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG-PNGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGLL  294 (467)
Q Consensus       217 ~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~-p~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~ll  294 (467)
                       .|.+|+.+|+|||++++|-        +++|+++.. -.|..+.+||||..-. .++++.||||+|+.|+|+.|.+.++
T Consensus       391 -tf~~F~~ra~~qi~~~~al--------~~lpv~~v~~~~GlvGeDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~a~  461 (642)
T PRK12571        391 -IYSTFLQRGYDQVLHDVAL--------QKLPVRFVIDRAGLVGADGATHAGMFDMAFLTCLPNLRVMAPADEAELRHML  461 (642)
T ss_pred             -EECCHHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHH
T ss_conf             -9674455437887632551--------5986699996673247998764243778875479981899129999999999


Q ss_pred             HHHHHC-CCCEEEECCCCCCCCCCCCCC--C--CCEECCCCCEEEEECCC-CCEEEEHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             565413-783476402123333345334--6--63121443114443168-74586025788888888753100467527
Q gi|254780673|r  295 KAAIRD-PNPVIFLENEILYGSSFEVPM--V--DDLVIPIGRARIHRQGS-DVTIISFGIGMTYATKAAIELEKNGIDAE  368 (467)
Q Consensus       295 ~~ai~~-~~Pvi~le~~~ly~~~~~~p~--~--~~~~~p~Gk~~i~~~G~-ditii~~G~~~~~a~~aa~~L~~~gi~~~  368 (467)
                      +.|+.. ++|+++     +|.|. .+|.  .  ....+.+||++++++|+ |++||++|+++..|++|++.|+++||+++
T Consensus       462 ~~al~~~~gP~~i-----~l~R~-~~~~~~~~~~~~~~~~g~~~~~~~g~~dv~lia~Gs~v~~Al~Aa~~L~~~Gi~~~  535 (642)
T PRK12571        462 RTAVAHDDGPIAV-----RYPRG-EGVGVEIPAVGRVLGIGKGRVPREGRPDVAILSVGAHLHECLEAAELLEAEGISVT  535 (642)
T ss_pred             HHHHHCCCCCEEE-----EECCC-CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             9998668998899-----95278-78887766421113564389942799998999860999999999999986699869


Q ss_pred             EEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHCC
Q ss_conf             9733006857999999999871989999578876767899999999967764289829971777888889--66765608
Q gi|254780673|r  369 LIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYA--ANLEKLAL  446 (467)
Q Consensus       369 vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~--~~le~~~~  446 (467)
                      |||++|++|+|.+.+.+..++++.+|++|++. .+|+|+.+..++.+.++.....++.+++.+|....++  ..|-++|-
T Consensus       536 Vv~~~~~kp~D~~~~~~~~~~~~~vv~~E~~~-~gG~g~~v~~~~~~~g~~~~~~~~~~~Gi~d~Fg~sa~~~~l~~~~G  614 (642)
T PRK12571        536 VADARFVKPLDEALIAQLARRHRVLVTVEDGA-MGGFGAHVLHHLADAGLLDGGLKLRTLGLPDRFIDHASPEEMYAEAG  614 (642)
T ss_pred             EECCCCCCCCCHHHHHHHHHHCCEEEEEECCC-CCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf             98167378779999999970098899990785-12389999999997498778973899835887678499999999979


Q ss_pred             CCHHHHHHHHHHHHCCCCC
Q ss_conf             9989999999998502002
Q gi|254780673|r  447 PNVDEIIESVESICYKRKA  465 (467)
Q Consensus       447 p~~~~I~~av~~v~~~~~~  465 (467)
                      .+++.|++++++++.|-+.
T Consensus       615 lt~e~Iv~~i~~~L~r~~~  633 (642)
T PRK12571        615 LTAPDIAAQVTGALARLDG  633 (642)
T ss_pred             CCHHHHHHHHHHHHHHCCC
T ss_conf             3999999999999862669


No 14 
>PRK05899 transketolase; Reviewed
Probab=100.00  E-value=3.3e-37  Score=280.57  Aligned_cols=290  Identities=20%  Similarity=0.232  Sum_probs=219.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--CCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCC-CCCHHH
Q ss_conf             0000012235544311365069993243445886--6532364754081110116666278998999988718-864456
Q gi|254780673|r  140 ITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGA--YKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAG-LKPIVE  216 (467)
Q Consensus       140 ~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~--f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G-~~Piv~  216 (467)
                      ...|.+..++|....+.+|++|.+--|+..-.+.  |+...-..+.| |+|+||+||+||+|+++|+|||+.| ++|++.
T Consensus       352 ~Atr~afg~~L~~l~~~~p~ivg~sADl~~St~~~~~~~~~~~~e~~-~~r~~~~GIaE~~mv~~aaGla~~G~~~P~~~  430 (661)
T PRK05899        352 VATRKASGKALNALAAALPELVGGSADLAGSNNTEIKGSKDFTPDDY-SGRYIHYGVREFAMAAIMNGLALHGGFIPFGG  430 (661)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             04999999999999854876178704547886644255777676578-98732446208999999999985499884012


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCC-CCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCH
Q ss_conf             6666789999999998788674211776788879983-0244-576444433216-887632203138665221000105
Q gi|254780673|r  217 FMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG-PNGA-AARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGL  293 (467)
Q Consensus       217 ~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~-p~G~-~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~l  293 (467)
                       .|.-|+.|++|||+..+-         +++|+++-+ ..|. .+.+|++|..-. .++++.||||+|+.|+|..+++.+
T Consensus       431 -tf~~F~~ra~dqir~~al---------~~~~v~~v~t~~Gi~vG~DG~THq~i~dla~lr~iPn~~v~~P~d~~E~~~~  500 (661)
T PRK05899        431 -TFLVFSDYARNAIRLAAL---------MKLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAA  500 (661)
T ss_pred             -EHHHHHHHHHHHHHHHHH---------HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHH
T ss_conf             -079899998999998876---------0487499997875234899866124678999855899679815999999999


Q ss_pred             HHHHHH-CCCCEEEECCCCCCCCCCCCCC-----CCCEECCCCCEEEEECC-CCCEEEEHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             556541-3783476402123333345334-----66312144311444316-8745860257888888887531004675
Q gi|254780673|r  294 LKAAIR-DPNPVIFLENEILYGSSFEVPM-----VDDLVIPIGRARIHRQG-SDVTIISFGIGMTYATKAAIELEKNGID  366 (467)
Q Consensus       294 l~~ai~-~~~Pvi~le~~~ly~~~~~~p~-----~~~~~~p~Gk~~i~~~G-~ditii~~G~~~~~a~~aa~~L~~~gi~  366 (467)
                      ++.++. .++|++     ++|.+. .+|.     ..+..+..|+..++++| .|++|+++|.|+.+|++|++.|+++||+
T Consensus       501 ~~~a~~~~~gp~~-----ir~~r~-~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~Aa~~L~~~gi~  574 (661)
T PRK05899        501 WKLALERKDGPSA-----LVLSRQ-NLPVLETTEEQDEGVAKGGYVLKDSGGPDVILIATGSEVHLALEAAKELEAEGIK  574 (661)
T ss_pred             HHHHHHCCCCCEE-----EEECCC-CCCCCCCCCCCHHHHCCCCEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf             9999966999789-----996688-7787787765144421661899987999889998329999999999999864998


Q ss_pred             EEEEECCCCCCCCHH--HHHHHH--HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC--CHH
Q ss_conf             279733006857999--999999--87198999957887676789999999996776428982997177788888--966
Q gi|254780673|r  367 AELIDLRTIRPMDWQ--TIFESV--KKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPY--AAN  440 (467)
Q Consensus       367 ~~vid~r~l~Pld~~--~i~~sv--~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~--~~~  440 (467)
                      ++|||++|++|||.+  ...+.+  .+++.+++||++...++.             .++..+..+++. |....+  ...
T Consensus       575 ~~Vv~~~s~~pld~~~~~~~~~vl~~~~~~ivtvE~~~~~g~~-------------~~~~~~~~~lGi-d~Fg~sg~~~~  640 (661)
T PRK05899        575 VRVVSMPSTELFDEQDAAYKESVLPAAVTKRVAVEAGVADGWY-------------KYVGLDGAVVGM-DTFGASAPADE  640 (661)
T ss_pred             EEEEECCCCCHHHCCCHHHHHHHCCCCCCCEEEECCCHHHHHH-------------HHCCCCCEEEEC-CCCCCCCCHHH
T ss_conf             6999768872454674989986427678838998488476589-------------872999789864-88889899999


Q ss_pred             HHHHCCCCHHHHHHHHHHHH
Q ss_conf             76560899899999999985
Q gi|254780673|r  441 LEKLALPNVDEIIESVESIC  460 (467)
Q Consensus       441 le~~~~p~~~~I~~av~~v~  460 (467)
                      |-++|-.+++.|++++++++
T Consensus       641 L~~~~gld~~~I~~~~~~~L  660 (661)
T PRK05899        641 LFKEFGFTVENIVAAAKELL  660 (661)
T ss_pred             HHHHHCCCHHHHHHHHHHHH
T ss_conf             99995989999999999974


No 15 
>pfam02779 Transket_pyr Transketolase, pyrimidine binding domain. This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Probab=100.00  E-value=2.2e-39  Score=295.87  Aligned_cols=168  Identities=40%  Similarity=0.543  Sum_probs=152.4

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             00000012235544311365069993243445886653236475408111011666627899899998871886445666
Q gi|254780673|r  139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFM  218 (467)
Q Consensus       139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~  218 (467)
                      .+++|+|++++|.++|++|++++++|||++  +|+|..+.++..+||++||||+||+||+|+|+|+|+|++|+||+++++
T Consensus         2 ~~~~r~a~~~al~~~~~~d~~vv~~~~D~~--~g~~~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~G~A~~G~~~iv~~~   79 (174)
T pfam02779         2 KIATRKASGEALAELAERDPRVVGGGADVG--GGTFTVTKGLLHPQGEGRVIDTGIAEQAMVGIANGMALHGLLPPVEAT   79 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEECCCC--CCCCCHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             764999999999999977989999948778--875513324658778985676581779999999999970996411121


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCE-EEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHH
Q ss_conf             667899-9999999878867421177678887-99830244576444433216887632203138665221000105556
Q gi|254780673|r  219 TFNFAM-QAIDQIINSAAKTRYMSGGQITTSI-VFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKA  296 (467)
Q Consensus       219 ~~~f~~-~a~dqi~n~~ak~~~~~gg~~~~p~-v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~  296 (467)
                      |.+|+. ++++||+|++++      +++++|+ ++|.+.|.++..+.+||++.++||+++|||+|++|+|+.|+++||++
T Consensus        80 f~~F~~~r~~~~i~~~~~~------~~~~v~~v~~~~g~~~g~~G~tHhs~~~~a~~~~iPgl~V~~Ps~~~da~~ll~~  153 (174)
T pfam02779        80 FGDFANIRADAAIRHYAAL------GKLPVPFVVTRDPIGVGEDGPTHQSQEDEAYLRAIPGLKVVRPSDPAEAKGLLRA  153 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHH------CCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHH
T ss_conf             7888888659999999985------8999987866646025677154656428999975899889961999999999999


Q ss_pred             HHH--CCCCEEEECCCCCCC
Q ss_conf             541--378347640212333
Q gi|254780673|r  297 AIR--DPNPVIFLENEILYG  314 (467)
Q Consensus       297 ai~--~~~Pvi~le~~~ly~  314 (467)
                      |++  +++||+++|||.+|+
T Consensus       154 ai~~~~~~Pv~i~~~r~~~~  173 (174)
T pfam02779       154 AIRRDDDDPVVFRLPRQLLR  173 (174)
T ss_pred             HHHCCCCCCEEEEECHHHCC
T ss_conf             99648998389983077678


No 16 
>KOG0523 consensus
Probab=100.00  E-value=5e-36  Score=272.32  Aligned_cols=302  Identities=20%  Similarity=0.278  Sum_probs=226.4

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCC-CCHH
Q ss_conf             000000001223554431136506999324344588665323647540811101166662789989999887188-6445
Q gi|254780673|r  137 TSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGL-KPIV  215 (467)
Q Consensus       137 ~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~-~Piv  215 (467)
                      .+.++.|.+..+||+.+-+.||+++..--|...  +.|  |.-+.++| |+|+|+.+|+||+|+|++.|+|..|. +|++
T Consensus       317 Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~--st~--td~~~~~~-p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~  391 (632)
T KOG0523         317 DKAVATRKAFGEALAALAEADPRVIGGSADLKN--STL--TDFFPKRF-PERFIECGIAEQNMVGIANGIACRGRTIPFC  391 (632)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCH--HHHCCCCC-CCCEEEEEEEHHHHHHHHHCHHCCCCCCCHH
T ss_conf             600547999999999976428564887546678--716--65431227-6642787320211677540231178866513


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE--ECCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCC
Q ss_conf             66666789999999998788674211776788879983--0244576444433216-88763220313866522100010
Q gi|254780673|r  216 EFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG--PNGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKG  292 (467)
Q Consensus       216 ~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~--p~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~  292 (467)
                      . -|+.|..||+||++..+-     +    ..+++..+  -.+..+.+||+|..-. .++|+.||||.|++|+|..+...
T Consensus       392 ~-tf~~F~trA~dqvr~~a~-----s----~~~v~~v~th~~i~~GeDGPth~~iedla~frsiPn~~v~~PaD~~et~~  461 (632)
T KOG0523         392 G-TFAAFFTRAFDQVRMGAL-----S----QANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGNETEN  461 (632)
T ss_pred             H-HHHHHHHHHHHHEEEHHH-----C----CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHHH
T ss_conf             8-799999875302443223-----1----68857999704511368886556388999987078854771076378999


Q ss_pred             HHHHHHHCCC-CEEEECCCCCCCCCCCCCCCC-CEECCCCCEE-EEECCC-CCEEEEHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             5556541378-347640212333334533466-3121443114-443168-74586025788888888753100467527
Q gi|254780673|r  293 LLKAAIRDPN-PVIFLENEILYGSSFEVPMVD-DLVIPIGRAR-IHRQGS-DVTIISFGIGMTYATKAAIELEKNGIDAE  368 (467)
Q Consensus       293 ll~~ai~~~~-Pvi~le~~~ly~~~~~~p~~~-~~~~p~Gk~~-i~~~G~-ditii~~G~~~~~a~~aa~~L~~~gi~~~  368 (467)
                      ++..|...++ |.++    .+++++.  |..+ .-.+.+||++ ++++++ ||++|++|.+|++|++||+.|+++||+++
T Consensus       462 av~~Aa~~~~~p~i~----~~~r~~~--~~~~~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~e~gi~vr  535 (632)
T KOG0523         462 AVATAANTKGTPSIR----TLSRQNL--PIYNNTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLSEDGIKVR  535 (632)
T ss_pred             HHHHHHHCCCCEEEE----EECCCCC--CCCCCCCHHHHCCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEE
T ss_conf             999987048960699----8477765--6568965545326507986388877999265899999999999986496389


Q ss_pred             EEECCCCCCCCHHHHHHHHHHCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC--CCHHHHHHC
Q ss_conf             97330068579999999998719-899995788767678999999999677642898299717778888--896676560
Q gi|254780673|r  369 LIDLRTIRPMDWQTIFESVKKTG-RLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMP--YAANLEKLA  445 (467)
Q Consensus       369 vid~r~l~Pld~~~i~~sv~kt~-~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P--~~~~le~~~  445 (467)
                      |+|++|+||||..+|.++.+.++ |+.|+|++...||++....+....     ++.-.+..-..|...-  -.+.|-+.+
T Consensus       536 Vvd~~~~kplD~~li~~~~q~~~~ri~v~ed~~~~gsi~~~~~a~~g~-----~~~~~~~~~~~d~~~~sG~p~ell~~f  610 (632)
T KOG0523         536 VVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGK-----YPGILVPSLGVDTFGRSGPPPELLKMF  610 (632)
T ss_pred             EECCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEEHHCC-----CCCCCCEEECCCCCCCCCCCHHHHHHH
T ss_conf             954532000235877655135541799804877776665302102103-----788631353124677679978999872


Q ss_pred             CCCHHHHHHHHHHHHCCCC
Q ss_conf             8998999999999850200
Q gi|254780673|r  446 LPNVDEIIESVESICYKRK  464 (467)
Q Consensus       446 ~p~~~~I~~av~~v~~~~~  464 (467)
                      -.+.+.|.+++++...|-+
T Consensus       611 Git~~~Ia~~a~~~i~~~~  629 (632)
T KOG0523         611 GITARHIAAAALSLIGKYR  629 (632)
T ss_pred             CCCHHHHHHHHHHHHHHHC
T ss_conf             9888999999999874440


No 17 
>PRK12754 transketolase; Reviewed
Probab=100.00  E-value=7.9e-33  Score=249.85  Aligned_cols=289  Identities=15%  Similarity=0.172  Sum_probs=192.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHC-CCCCHHHHH
Q ss_conf             000012235544311365069993243445886-653236475408111011666627899899998871-886445666
Q gi|254780673|r  141 TVREALRDAIAEEMRRDKDVFIMGEEVAEYQGA-YKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFA-GLKPIVEFM  218 (467)
Q Consensus       141 TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~-f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~-G~~Piv~~~  218 (467)
                      ..|.+-..++...-+..|+++.--.|+....-. ..-+..+.++| |+|+||.||+||+|+++|.|||+. |++|++. .
T Consensus       356 atr~a~~~~l~~~~~~~p~liggsADL~~st~t~~~g~~~f~~~~-pgR~~~~GIrE~~m~aia~Gla~~ggl~P~~a-t  433 (663)
T PRK12754        356 ASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYTS-T  433 (663)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHC-CCCEEEHHHHHHHHHHHHHHHHHCCCCEEEEE-E
T ss_conf             324311869999998637772567222554333335774322006-86625402578889999999987289725774-4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE-EEECC-CCCCCCHHHHHH-HHHHHHHHCCCEEEEEECCHHCCCHHH
Q ss_conf             667899999999987886742117767888799-83024-457644443321-688763220313866522100010555
Q gi|254780673|r  219 TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF-RGPNG-AAARVAAQHSQC-YAAWYSHVPGLKVVIPYTASDAKGLLK  295 (467)
Q Consensus       219 ~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~-r~p~G-~~~~~g~~Hs~~-~~~~~~~iPgl~V~~P~~~~d~~~ll~  295 (467)
                      |+.|+-|++|||+..+..         ++++++ -+..| ..+.+||+|..- ..++++.||||+|+.|+|..+.+.+++
T Consensus       434 f~~F~dra~d~iRl~~~~---------~~~~~~v~thd~i~vGeDGpTHq~ve~la~lR~iPn~~v~~PaD~~E~~~a~~  504 (663)
T PRK12754        434 FLMFVEYARNAVRMAALM---------KQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWK  504 (663)
T ss_pred             EHHHHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH
T ss_conf             088999888999999875---------27856999725632079986316689999997447977981399999999999


Q ss_pred             HHHH-CCCCEEEECCCCCCCCCCCCCC---CCCEECCCC-CEEEEECCC---CCEEEEHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             6541-3783476402123333345334---663121443-114443168---7458602578888888875310046752
Q gi|254780673|r  296 AAIR-DPNPVIFLENEILYGSSFEVPM---VDDLVIPIG-RARIHRQGS---DVTIISFGIGMTYATKAAIELEKNGIDA  367 (467)
Q Consensus       296 ~ai~-~~~Pvi~le~~~ly~~~~~~p~---~~~~~~p~G-k~~i~~~G~---ditii~~G~~~~~a~~aa~~L~~~gi~~  367 (467)
                      .|+. .++|+.     ++|.|. .+|.   ..+....++ .+.++++++   |++|+++|++|.+|++||+.|+++||++
T Consensus       505 ~al~~~~gP~~-----i~~~R~-~~~~~~~~~~~~~~~~~G~yv~~~~~g~~dv~iia~Gs~v~~Al~Aa~~L~~~gi~~  578 (663)
T PRK12754        505 YGVERQDGPTA-----LILSRQ-NLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKA  578 (663)
T ss_pred             HHHHCCCCCEE-----EEEECC-CCCCCCCCCCHHCCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCE
T ss_conf             99965589769-----998478-878768762001003563299850599999999952589999999999999679978


Q ss_pred             EEEECCCCCCCCHHH--HHHHHHHC--CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CCCCHHH
Q ss_conf             797330068579999--99999871--98999957887676789999999996776428982997177788--8889667
Q gi|254780673|r  368 ELIDLRTIRPMDWQT--IFESVKKT--GRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVP--MPYAANL  441 (467)
Q Consensus       368 ~vid~r~l~Pld~~~--i~~sv~kt--~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p--~P~~~~l  441 (467)
                      +|||++|++|||.+.  ..+++-..  ..-+.||     +|++.....++        ..+-..++..+-.  -| ...|
T Consensus       579 ~VVs~~~~~~~d~q~~~~~~~vl~~~~~~~v~ve-----~g~~~~w~~~~--------g~~~~~iG~~~FG~Sg~-~~~l  644 (663)
T PRK12754        579 RVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVE-----AGIADYWYKYV--------GLNGAIVGMTTFGESAP-AELL  644 (663)
T ss_pred             EEEECCCCHHHHHCHHHHHHHHCCCCCCEEEEEE-----CCCHHHHHHHC--------CCCCEEEECCCCCCCCC-HHHH
T ss_conf             9997898548774649999843687765069996-----56265799982--------99980985676668899-9999


Q ss_pred             HHHCCCCHHHHHHHHHHHH
Q ss_conf             6560899899999999985
Q gi|254780673|r  442 EKLALPNVDEIIESVESIC  460 (467)
Q Consensus       442 e~~~~p~~~~I~~av~~v~  460 (467)
                      -+.|-.+++.|++++|+++
T Consensus       645 ~~~~Glt~e~I~~~vk~lL  663 (663)
T PRK12754        645 FEEFGFTVDNVVAKAKALL  663 (663)
T ss_pred             HHHHCCCHHHHHHHHHHHC
T ss_conf             9994989999999999659


No 18 
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00  E-value=2.6e-32  Score=246.30  Aligned_cols=151  Identities=26%  Similarity=0.402  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             01223554431136506999324344588665323647540811101166662789989999887188644566666789
Q gi|254780673|r  144 EALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFA  223 (467)
Q Consensus       144 ea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~  223 (467)
                      +|.+++|.++|++|++++++++|++.++|    +.++.++| |+|+||+||+||+|+|+|+|||++|+|||++. +..|+
T Consensus         1 ~a~~~~l~~~~~~d~~vv~l~~Dl~~~~~----~~~f~~~~-p~r~in~GIaE~~~vg~a~GlA~~G~~pi~~~-~~~F~   74 (156)
T cd07033           1 KAFGEALLELAKKDPRIVALSADLGGSTG----LDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVST-FSFFL   74 (156)
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCCCCCC----HHHHHHHC-CCCEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHH
T ss_conf             97999999999779799999687678877----58999878-97844477019999999999997599981135-79887


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC--CCCCCCHHHHHHH--HHHHHHHCCCEEEEEECCHHCCCHHHHHHH
Q ss_conf             999999998788674211776788879983024--4576444433216--887632203138665221000105556541
Q gi|254780673|r  224 MQAIDQIINSAAKTRYMSGGQITTSIVFRGPNG--AAARVAAQHSQCY--AAWYSHVPGLKVVIPYTASDAKGLLKAAIR  299 (467)
Q Consensus       224 ~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G--~~~~~g~~Hs~~~--~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~  299 (467)
                      +||+|||+|++|.        .++|+++++..+  .++..|++| |+.  .++|+++|||+|++|+|+.|++++++++++
T Consensus        75 ~r~~eqi~~~~a~--------~~~~v~~v~~~~g~~~~~~G~tH-~~~ed~~~~~~~Pgl~i~~P~~~~e~~~ll~~a~~  145 (156)
T cd07033          75 QRAYDQIRHDVAL--------QNLPVKFVGTHAGISVGEDGPTH-QGIEDIALLRAIPNMTVLRPADANETAAALEAALE  145 (156)
T ss_pred             HHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCC-CCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf             5109999999775--------27996599768854777897880-55005878723899489961999999999999982


Q ss_pred             CCCCEEEECC
Q ss_conf             3783476402
Q gi|254780673|r  300 DPNPVIFLEN  309 (467)
Q Consensus       300 ~~~Pvi~le~  309 (467)
                      +++|+++..+
T Consensus       146 ~~~P~~irl~  155 (156)
T cd07033         146 YDGPVYIRLP  155 (156)
T ss_pred             CCCCEEEEEE
T ss_conf             8998899976


No 19 
>PRK12753 transketolase; Reviewed
Probab=99.98  E-value=1.6e-30  Score=233.69  Aligned_cols=292  Identities=17%  Similarity=0.180  Sum_probs=202.7

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHC-CCCCHHH
Q ss_conf             00000012235544311365069993243445886-653236475408111011666627899899998871-8864456
Q gi|254780673|r  139 SITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGA-YKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFA-GLKPIVE  216 (467)
Q Consensus       139 ~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~-f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~-G~~Piv~  216 (467)
                      .+..|.+...++...-...|+++....|+....-. +.-+..+.+.| |.|+|+.||+||+|++++.|+|+. |++|++.
T Consensus       353 ~iAtR~a~g~~L~~l~~~~p~liggsADL~~S~~t~~~~~~~f~~~~-~gr~~~~GI~E~~m~~~a~Gla~~ggl~P~~~  431 (662)
T PRK12753        353 KIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPYTA  431 (662)
T ss_pred             CCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEECHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             42166656899999997581230676643665543146774334378-97626612578879999989987289748876


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE-EECC-CCCCCCHHHH-HHHHHHHHHHCCCEEEEEECCHHCCCH
Q ss_conf             666678999999999878867421177678887998-3024-4576444433-216887632203138665221000105
Q gi|254780673|r  217 FMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFR-GPNG-AAARVAAQHS-QCYAAWYSHVPGLKVVIPYTASDAKGL  293 (467)
Q Consensus       217 ~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r-~p~G-~~~~~g~~Hs-~~~~~~~~~iPgl~V~~P~~~~d~~~l  293 (467)
                       -|+-|+-+++|||+..+.         +++|+++. +..| ..+.+||+|. -...++++.||||+|+.|+|..+.+.+
T Consensus       432 -tf~~F~~~~~~~ir~~a~---------~~~~~i~v~Thd~i~vGeDGpTHQ~ie~la~lR~iPn~~v~~PaD~~E~~~a  501 (662)
T PRK12753        432 -TFLMFVEYARNAARMAAL---------MKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVA  501 (662)
T ss_pred             -EHHHHHHHHHHHHHHHHH---------HCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf             -599999986899999987---------2588279995355404688765330789999985558779931888999999


Q ss_pred             HHHHHH-CCCCEEEECCCCCCCC-CC-CCCCCCCEECCCCC-EEEEECCC---CCEEEEHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             556541-3783476402123333-34-53346631214431-14443168---745860257888888887531004675
Q gi|254780673|r  294 LKAAIR-DPNPVIFLENEILYGS-SF-EVPMVDDLVIPIGR-ARIHRQGS---DVTIISFGIGMTYATKAAIELEKNGID  366 (467)
Q Consensus       294 l~~ai~-~~~Pvi~le~~~ly~~-~~-~~p~~~~~~~p~Gk-~~i~~~G~---ditii~~G~~~~~a~~aa~~L~~~gi~  366 (467)
                      ++.++. .++|+.+     +|.| +. .++..++....+.| +.++++++   |++||++|++|.+|++||++|+++||+
T Consensus       502 ~~~a~~~~~gP~~l-----~l~R~~~~~~~~~~~~~~~~~~G~yil~~~~~~pdv~iiatGs~v~~Al~Aa~~L~~~gi~  576 (662)
T PRK12753        502 WKLAIERHNGPTAL-----ILSRQNLAQVERTPEQVKNIARGGYILKDSGGKPDLILIATGSEVEITLQAAEKLTGEGRN  576 (662)
T ss_pred             HHHHHHCCCCCEEE-----EEECCCCCCCCCCCHHHHCCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf             99999625897499-----9857877876887111321565259995059999899996309999999999999967997


Q ss_pred             EEEEECCCCCCCCHH--HHHHHHH--HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC--CHH
Q ss_conf             279733006857999--9999998--7198999957887676789999999996776428982997177788888--966
Q gi|254780673|r  367 AELIDLRTIRPMDWQ--TIFESVK--KTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPY--AAN  440 (467)
Q Consensus       367 ~~vid~r~l~Pld~~--~i~~sv~--kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~--~~~  440 (467)
                      ++||+++|++|||.+  ...+++-  .+...+.||.+     .+.....        ++..+-..++. |..--+  ...
T Consensus       577 ~~Vvs~~s~~~~d~q~~~~~~~vl~~~~~~~~~vEag-----~~~~w~~--------~~g~~~~~iGi-d~FG~Sg~~~~  642 (662)
T PRK12753        577 VRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAG-----IADYWYK--------YVGLKGAIIGM-TGFGESAPADK  642 (662)
T ss_pred             EEEEECCCCHHHHHCCHHHHHHHCCCCCCEEEEEECC-----CCCHHHH--------HCCCCCEEEEC-CCCCCCCCHHH
T ss_conf             8999789854877360999973067667547999647-----4004999--------80899859866-88789999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHH
Q ss_conf             76560899899999999985
Q gi|254780673|r  441 LEKLALPNVDEIIESVESIC  460 (467)
Q Consensus       441 le~~~~p~~~~I~~av~~v~  460 (467)
                      |-+.|-.+++.|++++|+++
T Consensus       643 L~~~~Glt~e~I~~~~k~~L  662 (662)
T PRK12753        643 LFPFFGFTVENIVAKAKKLL  662 (662)
T ss_pred             HHHHHCCCHHHHHHHHHHHC
T ss_conf             99984989999999999659


No 20 
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase; InterPro: IPR005477     DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. DXP synthase is found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis . In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding . This family includes transketolase enzymes 2.2.1.1 from EC. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0008661 1-deoxy-D-xylulose-5-phosphate synthase activity, 0016114 terpenoid biosynthetic process.
Probab=99.97  E-value=7.9e-30  Score=228.84  Aligned_cols=316  Identities=20%  Similarity=0.342  Sum_probs=254.9

Q ss_pred             CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHH
Q ss_conf             11233331-00000000000000122355443113650699932434458866532364754081110116666278998
Q gi|254780673|r  123 SKNDIQDS-SFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAG  201 (467)
Q Consensus       123 a~~~~~~~-~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G  201 (467)
                      .+...... ..+......++..+.....+.+..++|++++-+-.-...-.|    ..++.++| |+|+||++|+||+.+.
T Consensus       300 ~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g----~~~~~~~~-p~~~~d~~~~~~~~~~  374 (627)
T TIGR00204       300 GPFDLSTGKLLPKSKSAPPSYSKLFGDTLCELAKKDGKIVGITPAMPEGSG----LDKLSDKF-PDRYFDVGIAEQHAVT  374 (627)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----HHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf             765644331023554556641355556788775305652552012222331----46888750-0345423332345566


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCCCCCCCHHHHHHH-HHHHHHHCCC
Q ss_conf             9999887188644566666789999999998788674211776788879983-0244576444433216-8876322031
Q gi|254780673|r  202 IGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG-PNGAAARVAAQHSQCY-AAWYSHVPGL  279 (467)
Q Consensus       202 ~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~-p~G~~~~~g~~Hs~~~-~~~~~~iPgl  279 (467)
                      ++.|+|+.|+||++.+. ..|+.+++||++|+++.        .++|+.+.. -.|..+..|.+|...+ .++++++|||
T Consensus       375 ~~~~~~~~g~~p~~~~y-~~~l~~~yd~~~~d~~~--------~~~p~~~~~d~~g~~g~dg~~~~g~~d~~~~~~~p~~  445 (627)
T TIGR00204       375 LAAGLAIEGYKPFVAIY-STFLQRAYDQVVHDVCI--------QNLPVFFAIDRAGIVGADGETHQGLFDISYLRCIPNL  445 (627)
T ss_pred             HHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHH--------HHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             66555422430378888-88876666778887776--------3055024412334214776410213556776531300


Q ss_pred             EEEEEECCHHCCCHHHHHHHCC-CCEEEECCCCCCCCCC--CCCCCCC--EECCCCCEEEEECCCCCEEEEHHHHHHHHH
Q ss_conf             3866522100010555654137-8347640212333334--5334663--121443114443168745860257888888
Q gi|254780673|r  280 KVVIPYTASDAKGLLKAAIRDP-NPVIFLENEILYGSSF--EVPMVDD--LVIPIGRARIHRQGSDVTIISFGIGMTYAT  354 (467)
Q Consensus       280 ~V~~P~~~~d~~~ll~~ai~~~-~Pvi~le~~~ly~~~~--~~p~~~~--~~~p~Gk~~i~~~G~ditii~~G~~~~~a~  354 (467)
                      .+++|+|..+.+.++..+..++ +|+.     .+|.+..  .++....  ..+|+|+++++|.|.++.++.||.++..++
T Consensus       446 ~~~~p~d~~~~~~~~~~~~~~~~~p~~-----~~~p~g~~~g~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~g~~~~~~~  520 (627)
T TIGR00204       446 VLMAPKDENELRQMLYTGYEYDGGPIA-----VRYPRGNGLGVELTPEPWEGLPIGKSELLRKGGDLLLLGFGTLVPPAL  520 (627)
T ss_pred             EEECCCCHHHHHHHHHHHHCCCCCCEE-----EECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCHHHHHH
T ss_conf             132366345666666531114775204-----531465533343321354322124023103777468873352135788


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
Q ss_conf             88753100467527973300685799999999987198999957887676789999999996776428982997177788
Q gi|254780673|r  355 KAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVP  434 (467)
Q Consensus       355 ~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p  434 (467)
                      ++++.|.++|+++.++|+|+++|+|.+.+...++....+++++|+...||+|+.+...+.++.  ....|+.+++.+|..
T Consensus       521 ~~~~~l~~~~~~~~~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~gg~g~~~~~~~~~~~--~~~~p~~~~g~pd~~  598 (627)
T TIGR00204       521 EVAEALNEEGLEATLVDLRFVKPLDEELILPLAAPHGKLVTLEENALLGGFGSAVLEFLSDQG--EKLTPLKRLGLPDEF  598 (627)
T ss_pred             HHHHHHHHCCCEEEEECHHHHCCCCHHHHHHHHHCCCCEEEEECCHHCCCHHHHHHHHHHHCC--CCCCHHHHHCCCHHH
T ss_conf             999987533760565200220313468899886303303553011010320468899886247--400024441441244


Q ss_pred             CCCCH--HHHHHCCCCHHHHHHHHHHH
Q ss_conf             88896--67656089989999999998
Q gi|254780673|r  435 MPYAA--NLEKLALPNVDEIIESVESI  459 (467)
Q Consensus       435 ~P~~~--~le~~~~p~~~~I~~av~~v  459 (467)
                      ++++.  .+....-.+...+.+.++..
T Consensus       599 ~~~~~~~~~~~~~gl~~~~~~~~~~~~  625 (627)
T TIGR00204       599 IPHGTPEELLADLGLDTAGLADKILAL  625 (627)
T ss_pred             HCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             315646778876257767889999874


No 21 
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.97  E-value=1.3e-29  Score=227.32  Aligned_cols=85  Identities=32%  Similarity=0.610  Sum_probs=79.8

Q ss_pred             CCEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             97356678888881157898774178976258985999953753334317778689899823788513269758999437
Q gi|254780673|r    1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus         1 M~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      |++||+||+|||+|+||+|++|+||+||.|++||+|||||||||++|||||++|+|.+|++++| +.|+||++|++|.++
T Consensus         1 M~~ei~mP~lGe~m~Eg~I~~Wlvk~GD~V~~gd~L~eVETDKa~~Ei~s~~~G~l~ki~~~eG-d~v~VG~~ia~I~~~   79 (406)
T PRK05704          1 MSVEIKVPTLPESVTEATIATWHKKPGDAVARDEVLVEIETDKVVLEVPAPAAGVLSEILAEEG-DTVTVGQVLGRIDEG   79 (406)
T ss_pred             CCCEEECCCCCCCCEEEEEEEEECCCCCEECCCCEEEEEECCCCCEEECCCCCEEEEEEEECCC-CEECCCCEEEEEECC
T ss_conf             9823667999998307999899818999978999089998386207974888989999830898-996689989998268


Q ss_pred             CCCCCC
Q ss_conf             777211
Q gi|254780673|r   81 GETALD   86 (467)
Q Consensus        81 ge~a~~   86 (467)
                      ++....
T Consensus        80 ~~~~~~   85 (406)
T PRK05704         80 AAAGAE   85 (406)
T ss_pred             CCCCCC
T ss_conf             876667


No 22 
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.97  E-value=5.7e-29  Score=222.81  Aligned_cols=86  Identities=34%  Similarity=0.585  Sum_probs=79.1

Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf             35667888888115789877417897625898599995375333431777868989982378851326975899943777
Q gi|254780673|r    3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE   82 (467)
Q Consensus         3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege   82 (467)
                      .+||||+|||+|+||+|++|+||+||.|++||+|||||||||+||||||++|+|.+|++++| |+|+||++|+.|+++++
T Consensus        58 ~~ikMP~LGetm~EG~Iv~WlvkeGD~V~~gd~L~EVETDKA~~EVeSp~~G~l~kIlv~eG-d~V~VG~~la~I~~~~e  136 (430)
T PTZ00144         58 KTIKVPRLGDSISEGTLSEWKKKVGDYVKVDETIAIVETDKVSVDINSKFSGVLSKIFAEVG-DTVLVGKPLCEIDTSGE  136 (430)
T ss_pred             EEEECCCCCCCCEEEEEEEEECCCCCEECCCCCEEEEECCCCCEEECCCCCEEEEEEEECCC-CEEECCCEEEEEECCCC
T ss_conf             49879889998206999799818999868999089998588417965778979999863799-98946986999966878


Q ss_pred             CCCCCCC
Q ss_conf             7211222
Q gi|254780673|r   83 TALDIDK   89 (467)
Q Consensus        83 ~a~~~~~   89 (467)
                      ..+...+
T Consensus       137 ~~~~~~~  143 (430)
T PTZ00144        137 PPAKIPE  143 (430)
T ss_pred             CCCCCCC
T ss_conf             7666655


No 23 
>pfam02780 Transketolase_C Transketolase, C-terminal domain. The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site.
Probab=99.96  E-value=3.4e-29  Score=224.34  Aligned_cols=123  Identities=49%  Similarity=0.773  Sum_probs=118.4

Q ss_pred             CCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf             31144431687458602578888888875310046752797330068579999999998719899995788767678999
Q gi|254780673|r  330 GRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTI  409 (467)
Q Consensus       330 Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i  409 (467)
                      ||++++|+|+|+|||+||+|+++|++|++.|+++||+++|||+||+||||+++|.++++||++++|+||++..||||++|
T Consensus         1 Gk~~~~~~G~di~ii~~G~~~~~al~aa~~L~~~gi~~~vid~~~ikPlD~~~i~~~~~~~~~vvtvEe~~~~gG~Gs~i   80 (124)
T pfam02780         1 GKAEILREGDDVTIVAYGSMVHEALEAAEELAAEGISAEVIDLRTVKPLDEDTILESVKKTGRLVVVEEAVPRGGFGAEV   80 (124)
T ss_pred             CCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf             94599982897999984789999999999987759856997423643667899999873348689984688678689999


Q ss_pred             HHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCC-CHHHH
Q ss_conf             99999967764289829971777888889667656089-98999
Q gi|254780673|r  410 ANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALP-NVDEI  452 (467)
Q Consensus       410 ~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p-~~~~I  452 (467)
                      ++.+.|++|.+|+.|+.|++.+|.|+|++..+|+.+|+ +++.|
T Consensus        81 ~~~l~e~~~~~l~~~v~~ig~pd~~ip~s~~~~~~~~Gl~~~~I  124 (124)
T pfam02780        81 AAALAEEGFDYLDAPVLRVGGPDTPIPHSPALELAYLGLTAEKI  124 (124)
T ss_pred             HHHHHHHCHHHCCCCEEEECCCCCCCCCCHHHHHHHCCCCHHHC
T ss_conf             99999856654499969974798989999999998849991239


No 24 
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006257   This group of sequences represent one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria, but not the Gram-positive bacteria.; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006090 pyruvate metabolic process, 0045254 pyruvate dehydrogenase complex.
Probab=99.96  E-value=1.3e-29  Score=227.42  Aligned_cols=157  Identities=39%  Similarity=0.559  Sum_probs=112.0

Q ss_pred             EEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCC
Q ss_conf             56678888881157898774178976258985999953753334317778689899823788513269758999437777
Q gi|254780673|r    4 LVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGET   83 (467)
Q Consensus         4 ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege~   83 (467)
                      .|+||+|++||++|+|++|+||+||.|+.||+|+|||||||+||+++.++|+|++|||++|+.+|+||++||++.+++++
T Consensus         1 ~i~MPaLSPTM~~Gnla~W~KKeGDkv~~GDViaEIETDKAtm~~e~~~eGyLAKILv~eGTkdvpvn~pIAV~v~~~eD   80 (584)
T TIGR01349         1 KITMPALSPTMTEGNLAKWLKKEGDKVKPGDVIAEIETDKATMEFEAQEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED   80 (584)
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECCCCH
T ss_conf             98888887154656210244113777168876988745842674576268578888652478576358616896068011


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH------------H--HHHHH
Q ss_conf             211222233212344222332233322233221000000112333310000000000000------------0--12235
Q gi|254780673|r   84 ALDIDKMLLEKPDVAISPSSKNTTLVFSNEDNDKVDHQKSKNDIQDSSFAHAPTSSITVR------------E--ALRDA  149 (467)
Q Consensus        84 a~~~~~~~a~~~~aa~aaa~~~~s~~~~~a~~~a~~~~~a~~~~~~~~~~~~~~~~~TvR------------e--a~~~a  149 (467)
                      ..++.+--.-+..+...|.+.+++.+...++++.+....+....++-..-.-|..+++|.            +  .-.++
T Consensus        81 ~~~a~~~~~~~~~a~~TP~~~pAp~P~~~a~PPtPsa~~~~~~YP~H~~V~lPALSP~M~~G~~~~W~KK~G~~~~~GD~  160 (584)
T TIGR01349        81 VADAFKDYKLEDSASSTPVAEPAPKPKEKAPPPTPSAKKSTKSYPAHKVVLLPALSPSMETGTVARWEKKVGDKLKEGDL  160 (584)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCE
T ss_conf             88998088700104788877787787223765586445778888864323245657655667400001345762233752


Q ss_pred             HHHHHCCCCCEE
Q ss_conf             544311365069
Q gi|254780673|r  150 IAEEMRRDKDVF  161 (467)
Q Consensus       150 ~~e~m~~d~~~~  161 (467)
                      |+| .+.|+-.+
T Consensus       161 ~AE-~ETDKAT~  171 (584)
T TIGR01349       161 LAE-VETDKATI  171 (584)
T ss_pred             EEE-EECCCEEE
T ss_conf             555-42252022


No 25 
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.96  E-value=4.6e-29  Score=223.43  Aligned_cols=157  Identities=40%  Similarity=0.589  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHCCC-CCEEEEECCCCCC-----CCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf             00001223554431136-5069993243445-----88665323647540811101166662789989999887188644
Q gi|254780673|r  141 TVREALRDAIAEEMRRD-KDVFIMGEEVAEY-----QGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPI  214 (467)
Q Consensus       141 TvRea~~~a~~e~m~~d-~~~~~~gedv~~~-----~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Pi  214 (467)
                      +.|++++++|.++|++| ++++++|+|++..     ++.|..++++    +|+|+||+||+||+|+|+|+|||+.|++||
T Consensus         1 ~~r~a~~~~l~~l~~~~~~~iv~~~~Dl~~~~~~~~~~~f~~~~~~----~~~r~i~~gIaE~~~vg~a~GlA~~G~~pi   76 (168)
T smart00861        1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTKGL----GPGRVIDTGIAEQAMVGFAAGLALAGLRPV   76 (168)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCCCCC----CCCCEEECCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             9189999999999856997199983674887577536610444456----998756448378999998759987599642


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC-CCCCCCCHH-HHHHHHHHHHHHCCCEEEEEECCHHCCC
Q ss_conf             56666678999999999878867421177678887998302-445764444-3321688763220313866522100010
Q gi|254780673|r  215 VEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPN-GAAARVAAQ-HSQCYAAWYSHVPGLKVVIPYTASDAKG  292 (467)
Q Consensus       215 v~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~-G~~~~~g~~-Hs~~~~~~~~~iPgl~V~~P~~~~d~~~  292 (467)
                      ++++. .|..+++|||+++++.        .++|++++... |..++.|++ ||++.+++|++|||++|++|+|+.|+++
T Consensus        77 ~~~~~-~f~~~a~~qi~~~~~~--------~~~~~v~~~~~~~~~g~~G~tH~s~~~~~~~~~ip~~~v~~P~~~~e~~~  147 (168)
T smart00861       77 VAIFF-TFFDRAKDQIRSDGAM--------GRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKG  147 (168)
T ss_pred             CCHHH-HHHHHHHHHHHHHHHC--------CCCCEEEEEECEEEECCCCCHHCCCCHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf             10235-7887589999865340--------66773788601005668864110444388886179978997099999999


Q ss_pred             HHHHHHHCC-CC-EEEECCC
Q ss_conf             555654137-83-4764021
Q gi|254780673|r  293 LLKAAIRDP-NP-VIFLENE  310 (467)
Q Consensus       293 ll~~ai~~~-~P-vi~le~~  310 (467)
                      +|+++++++ +| +|+++++
T Consensus       148 ~l~~a~~~~~~p~~i~l~~~  167 (168)
T smart00861      148 LLRAAIRRDDGPPVIRLERK  167 (168)
T ss_pred             HHHHHHHCCCCCEEEEECCC
T ss_conf             99999848899889997389


No 26 
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.96  E-value=1.6e-28  Score=219.63  Aligned_cols=86  Identities=31%  Similarity=0.494  Sum_probs=80.8

Q ss_pred             CCEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             97356678888881157898774178976258985999953753334317778689899823788513269758999437
Q gi|254780673|r    1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus         1 M~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      |+++|+||+|||+|+||+|++|||++||+|++||+|||||||||+||||||++|+|++|++++| ++|+||++|++|..+
T Consensus         1 Ma~e~~mP~lGe~~~egeI~~W~v~~GD~V~~~d~l~evETDKa~~Evps~~~G~v~~i~v~~G-d~v~vG~~i~~i~~~   79 (549)
T PRK11855          1 MAKEFKVPDIGEGVVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKKIKVKVG-DTVSVGAPLAVIEAA   79 (549)
T ss_pred             CCCEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCCEEECCCCCEEEEEEEECCC-CEECCCCEEEEEECC
T ss_conf             9846867888898512899999957999878999289998177136843888979999961899-884699859999568


Q ss_pred             CCCCCCC
Q ss_conf             7772112
Q gi|254780673|r   81 GETALDI   87 (467)
Q Consensus        81 ge~a~~~   87 (467)
                      ++.....
T Consensus        80 ~~~~~~~   86 (549)
T PRK11855         80 GAAAAAA   86 (549)
T ss_pred             CCCCCCC
T ss_conf             7766666


No 27 
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.95  E-value=8.2e-28  Score=214.67  Aligned_cols=83  Identities=52%  Similarity=0.783  Sum_probs=79.8

Q ss_pred             CCEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             97356678888881157898774178976258985999953753334317778689899823788513269758999437
Q gi|254780673|r    1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus         1 M~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      |+++|+||+|||||+||+|++|+||+||+|++||+|+||||||++||||||++|+|.+|++++|+ +|+||++|++|.++
T Consensus         1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~-~V~Vg~~I~~i~~~   79 (404)
T COG0508           1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGD-TVPVGAVIARIEEE   79 (404)
T ss_pred             CCCEEECCCCCCCCEEEEEEEEEECCCCEECCCCCEEEEEECCEEEEECCCCCCEEEEEECCCCC-EECCCCEEEEEECC
T ss_conf             97367468988851367885897269986369980699980653355147778599676205898-87589858999337


Q ss_pred             CCCC
Q ss_conf             7772
Q gi|254780673|r   81 GETA   84 (467)
Q Consensus        81 ge~a   84 (467)
                      +++.
T Consensus        80 ~~~~   83 (404)
T COG0508          80 GADA   83 (404)
T ss_pred             CCCC
T ss_conf             7765


No 28 
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR014276   This entry represents the mainly actinobacterial clade of the E2 component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (IPR001078 from INTERPRO), one or two biotin domains (IPR000089 from INTERPRO) and an E3-component binding domain (IPR004167 from INTERPRO)..
Probab=99.95  E-value=4.3e-28  Score=216.64  Aligned_cols=78  Identities=33%  Similarity=0.489  Sum_probs=75.3

Q ss_pred             CEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             7356678888881157898774178976258985999953753334317778689899823788513269758999437
Q gi|254780673|r    2 PILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus         2 ~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      +++|.||.||||+|||||++|||.+||+|+.|++|+||-|||+..|||||.+|+|.+|+++| ||+|.||++||+|.+.
T Consensus       135 aT~v~MPeLGESVTEGTvt~WLKaVGD~vEvDEPllEVsTDKVDTEiPSPvaGtlleI~a~E-DdtVeVG~vlA~IGDa  212 (607)
T TIGR02927       135 ATEVEMPELGESVTEGTVTRWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEILAEE-DDTVEVGAVLAKIGDA  212 (607)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCEEEEECCCCCCCCCCCCCCEEEEEEECC-CCEEECCCEEEEECCC
T ss_conf             56331644676202313787886339877633763564257206666887143688898177-8864315066542376


No 29 
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=99.94  E-value=4.1e-26  Score=202.75  Aligned_cols=75  Identities=51%  Similarity=0.724  Sum_probs=72.6

Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf             3566788888811578987741789762589859999537533343177786898998237885132697589994
Q gi|254780673|r    3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAIL   78 (467)
Q Consensus         3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~   78 (467)
                      ++|+||+|||+|+||+|++|+|++||.|++||+||||||||+++|||||++|+|.+|++++|+ .|+||++||+|.
T Consensus         2 ~~i~mP~lge~m~eg~i~~W~~~~Gd~V~~g~~l~eVeTDKa~~ei~a~~~G~l~~i~~~~G~-~v~VG~~ia~i~   76 (324)
T PRK11856          2 HEIKMPDLGEGMTEGEIVEWLVKEGDTVKKGDPLAEVETDKATVEVESPVAGTLRKILVEEGD-VVPVGAPIAVIV   76 (324)
T ss_pred             EEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCC-EECCCCEEEEEC
T ss_conf             288789999995179999999089999789994999980766689806888399899608979-957999899944


No 30 
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR014276   This entry represents the mainly actinobacterial clade of the E2 component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (IPR001078 from INTERPRO), one or two biotin domains (IPR000089 from INTERPRO) and an E3-component binding domain (IPR004167 from INTERPRO)..
Probab=99.94  E-value=2.8e-27  Score=210.98  Aligned_cols=86  Identities=35%  Similarity=0.543  Sum_probs=81.6

Q ss_pred             CCEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             97356678888881157898774178976258985999953753334317778689899823788513269758999437
Q gi|254780673|r    1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus         1 M~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      |++=++||.||||+|||||++|||.+||+|+.|++|.||-|||+..|||||.+|||++|.++| ||+|.||..||+|.++
T Consensus         1 Ma~SV~MPaLGESVTEGTvt~WLKavGDTVE~DEPLLEVsTDKVDTEiPSPaaGVlleI~a~E-DdTVevGg~lAiIGe~   79 (607)
T TIGR02927         1 MAISVKMPALGESVTEGTVTRWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPAAGVLLEIKAEE-DDTVEVGGVLAIIGEE   79 (607)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECC-CCEEEECCEEEEECCC
T ss_conf             974224766776202312666651068877104762100156206667976033266777367-7802305088986385


Q ss_pred             CCCCCCC
Q ss_conf             7772112
Q gi|254780673|r   81 GETALDI   87 (467)
Q Consensus        81 ge~a~~~   87 (467)
                      ||.....
T Consensus        80 gEasaea   86 (607)
T TIGR02927        80 GEASAEA   86 (607)
T ss_pred             CHHHCCC
T ss_conf             4000147


No 31 
>KOG0557 consensus
Probab=99.94  E-value=3.5e-26  Score=203.27  Aligned_cols=91  Identities=48%  Similarity=0.757  Sum_probs=84.3

Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf             35667888888115789877417897625898599995375333431777868989982378851326975899943777
Q gi|254780673|r    3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE   82 (467)
Q Consensus         3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege   82 (467)
                      ++|.||.|++||+||.|++|+||+||.++.||+|||||||||+|+++++++|.|++||++||+.+|+||.+||++.++.+
T Consensus        39 ~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e~  118 (470)
T KOG0557          39 KTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDED  118 (470)
T ss_pred             EEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCCC
T ss_conf             38615778863357842667522577568886589996045123344036776545541357655668871599952633


Q ss_pred             CCCCCCCCCCC
Q ss_conf             72112222332
Q gi|254780673|r   83 TALDIDKMLLE   93 (467)
Q Consensus        83 ~a~~~~~~~a~   93 (467)
                      +..+......+
T Consensus       119 di~~~k~~k~~  129 (470)
T KOG0557         119 DIAAFKLPKDE  129 (470)
T ss_pred             CHHHHHCCCCC
T ss_conf             37776266521


No 32 
>TIGR01347 sucB 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR006255   These sequences describe the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. Members include the mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus and are generally excluded from this group of sequences as are all examples of dihydrolipoamide acetyltransferase. ; GO: 0004149 dihydrolipoyllysine-residue succinyltransferase activity, 0006099 tricarboxylic acid cycle, 0045252 oxoglutarate dehydrogenase complex.
Probab=99.93  E-value=5.9e-27  Score=208.65  Aligned_cols=76  Identities=38%  Similarity=0.680  Sum_probs=73.4

Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf             35667888888115789877417897625898599995375333431777868989982378851326975899943
Q gi|254780673|r    3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ   79 (467)
Q Consensus         3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~   79 (467)
                      ++|++|.|+||+|||||++|+||+||.|++||.||||||||+++||+||+||+|.+|+.+|| ++|.+|++|+.|.+
T Consensus         1 ~~ikvP~LaESvtegTva~W~KkvGD~V~~DE~iveiETDKV~lEV~Sp~dGvl~~~~~~eG-~TV~~g~~La~~~E   76 (435)
T TIGR01347         1 IEIKVPELAESVTEGTVAEWHKKVGDTVKRDELIVEIETDKVVLEVPSPADGVLQEILEKEG-DTVTSGQVLAVLEE   76 (435)
T ss_pred             CCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCEEEEEECCCEEEEEECCCCCHHHHHHCCCC-CEECCCEEEEEEEC
T ss_conf             96447887653553305541068887112277689752074467882885302174306898-88505507788823


No 33 
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.93  E-value=1.6e-25  Score=198.70  Aligned_cols=83  Identities=27%  Similarity=0.398  Sum_probs=77.4

Q ss_pred             CEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCC
Q ss_conf             73566788888811578987741789762589859999537533343177786898998237885132697589994377
Q gi|254780673|r    2 PILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEG   81 (467)
Q Consensus         2 ~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~eg   81 (467)
                      .++++||+||++|+||+|++|+||+||.|++||+||||||||+++|||||++|+|.+|++++|+ .|+||++|++|..++
T Consensus       117 ~~ev~mP~lGe~m~eg~I~~W~~k~GD~V~~gd~l~eVETDKa~~Ev~sp~~G~l~ki~v~eGd-~v~VG~~ia~i~~~~  195 (549)
T PRK11855        117 VEEVKVPDIGEGIVEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGD-KVSVGSLLFKIEVAG  195 (549)
T ss_pred             CCEEECCCCCCCCCCEEEEEEECCCCCEECCCCCEEEEEECCCCEEEECCCCCEEEEEEECCCC-CCCCCCEEEEEECCC
T ss_conf             5135468888874413776784078980136872578860553126743658754476505898-045798789972577


Q ss_pred             CCCC
Q ss_conf             7721
Q gi|254780673|r   82 ETAL   85 (467)
Q Consensus        82 e~a~   85 (467)
                      +...
T Consensus       196 ~~~~  199 (549)
T PRK11855        196 AAPA  199 (549)
T ss_pred             CCCC
T ss_conf             7766


No 34 
>PTZ00089 transketolase; Provisional
Probab=99.92  E-value=3.9e-23  Score=181.89  Aligned_cols=288  Identities=15%  Similarity=0.185  Sum_probs=198.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCH-HHHCCCCCEECCCCCHHHHHHHHHHHHH-CCCCCHHHH
Q ss_conf             000012235544311365069993243445886-6532364-7540811101166662789989999887-188644566
Q gi|254780673|r  141 TVREALRDAIAEEMRRDKDVFIMGEEVAEYQGA-YKVTQGL-LQEFGCERVIDTPITEHGFAGIGIGASF-AGLKPIVEF  217 (467)
Q Consensus       141 TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~-f~~t~gl-~~~fg~~R~~d~pi~E~~~~G~a~G~A~-~G~~Piv~~  217 (467)
                      ..|.+...++.......|.++.---|+...... .+-...+ .+.| +.|+|+.||.|++|.+++.|||+ .|+||++. 
T Consensus       356 ATR~asg~~L~~l~~~~p~ligGSADL~~Sn~T~l~~~~~~~~~~~-~gr~I~~GIREhaM~ai~NGialhgG~~P~~a-  433 (670)
T PTZ00089        356 ATRNLSGIALNCINKIFPELIGGSADLSESNCTALKEEKDIKKDSF-ANKYIRFGVREHGMVAITNGISAYGGFEPFCA-  433 (670)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEE-
T ss_conf             1799999999999752885499746656786544446777777787-88567862078779999999997389824763-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCCCCHHHHH-HHHHHHHHHCCCEEEEEECCHHCCCHH
Q ss_conf             6667899999999987886742117767888799830--2445764444332-168876322031386652210001055
Q gi|254780673|r  218 MTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP--NGAAARVAAQHSQ-CYAAWYSHVPGLKVVIPYTASDAKGLL  294 (467)
Q Consensus       218 ~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p--~G~~~~~g~~Hs~-~~~~~~~~iPgl~V~~P~~~~d~~~ll  294 (467)
                      -|+-|+-++.+||+..+-         +++|+++..-  ....+.+||||.- ...+.++.||||+|+.|+|+.+....+
T Consensus       434 TFlvFsdy~~~aiRlaAL---------~~l~vi~v~THDSi~vGEDGPTHQpvE~La~LR~iPnl~V~RPaD~~Et~~aw  504 (670)
T PTZ00089        434 TFLNFYTYAFGALRLAAL---------SNHHIFCIATHDSVELGEDGPTHQPIEVLALLRATPNLNIIRPADGNEVSGAY  504 (670)
T ss_pred             EHHHHHHHHHHHHHHHHH---------HCCCEEEEEECCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf             089999997768888887---------56874899962561144778866668999998708996798408889999999


Q ss_pred             HHHHHC-CCCEEEECCCCCCCCCCCCCCCCCEEC-C-CCCEEEEEC------CCCCEEEEHHHHHHHHHHHHHHHHCC-C
Q ss_conf             565413-783476402123333345334663121-4-431144431------68745860257888888887531004-6
Q gi|254780673|r  295 KAAIRD-PNPVIFLENEILYGSSFEVPMVDDLVI-P-IGRARIHRQ------GSDVTIISFGIGMTYATKAAIELEKN-G  364 (467)
Q Consensus       295 ~~ai~~-~~Pvi~le~~~ly~~~~~~p~~~~~~~-p-~Gk~~i~~~------G~ditii~~G~~~~~a~~aa~~L~~~-g  364 (467)
                      +.+++. ++|++++=.    ++  .+|...+... . ...+-++++      ..|++|++.|+.|..|++|++.|.++ |
T Consensus       505 ~~al~~~~~P~~l~ls----Rq--~lp~l~~~~~~~~~~GaYi~~d~~~~~~~~~iiliatGSEV~lA~~aa~~L~~~~g  578 (670)
T PTZ00089        505 LCHFKNLHTPTLIALC----RN--KVPHLKNTQAEQVLKGAYILEDFDNSNDKPKVILAGCGSELHLCFEAKEILKEQHN  578 (670)
T ss_pred             HHHHHCCCCCEEEEEE----CC--CCCCCCCCCHHHCCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf             9998677998799971----67--78776766443335777898755466899888999652899999999999855339


Q ss_pred             CCEEEEECCCCCCCCHH--HHHHHHH--HCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCC
Q ss_conf             75279733006857999--9999998--7198--99995788767678999999999677642898299717778--888
Q gi|254780673|r  365 IDAELIDLRTIRPMDWQ--TIFESVK--KTGR--LVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMP  436 (467)
Q Consensus       365 i~~~vid~r~l~Pld~~--~i~~sv~--kt~~--~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P  436 (467)
                      |++.||.+.|..-||..  ...++|-  +..+  .+.||.+.. .||...+            .   ..++..+-  .-|
T Consensus       579 i~vrVVSmP~~elF~~Q~~~y~~~vl~~~~~~~~~v~iEa~~~-~gw~~~~------------~---~~iGi~~FG~Sap  642 (670)
T PTZ00089        579 LNVRIVSFPSWNLFKKQPEDYQQSVMMHHDAKLPRFYIEPAST-HGFDTYF------------N---VYIGINQFGYSAP  642 (670)
T ss_pred             CCEEEEECCCHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCC-CCHHHHC------------C---EEECCCCCCCCCC
T ss_conf             8279996887599984579999862777899842799982445-6848875------------9---8963487778899


Q ss_pred             CCHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             89667656089989999999998502
Q gi|254780673|r  437 YAANLEKLALPNVDEIIESVESICYK  462 (467)
Q Consensus       437 ~~~~le~~~~p~~~~I~~av~~v~~~  462 (467)
                       +..|-+++-.+++.|+++|++.+..
T Consensus       643 -~~~l~~~fG~t~e~I~~~i~~~l~~  667 (670)
T PTZ00089        643 -KNKIWEHLGFTPENIVQKVLAFIEA  667 (670)
T ss_pred             -HHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             -8999999598999999999999987


No 35 
>PRK11854 aceF dihydrolipoamide acetyltransferase; Validated
Probab=99.92  E-value=2.5e-24  Score=190.24  Aligned_cols=83  Identities=25%  Similarity=0.326  Sum_probs=77.0

Q ss_pred             CCEEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             97356678888881157898774178976258985999953753334317778689899823788513269758999437
Q gi|254780673|r    1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus         1 M~~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      |+++|+||+||+  +||+|++|||++||+|++||+|+|||||||+||||||++|+|.+|++++| |+|.||++|++|.++
T Consensus         1 m~~~i~~Pd~g~--~e~~v~~~l~~~Gd~v~~~~~l~~vetDKa~~evps~~~G~~~~i~v~~g-d~v~~g~~l~~i~~~   77 (630)
T PRK11854          1 MAIEIKVPDIGA--DEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVG-DKVDTGALIMIFESA   77 (630)
T ss_pred             CCEEEECCCCCC--CEEEEEEEECCCCCEECCCCCEEEEECCCCCEECCCCCCCEEEEEEECCC-CCCCCCCEEEEEECC
T ss_conf             970676677778--80699998106898776899579998366233666888838999985689-812789868997057


Q ss_pred             CCCCCC
Q ss_conf             777211
Q gi|254780673|r   81 GETALD   86 (467)
Q Consensus        81 ge~a~~   86 (467)
                      ++....
T Consensus        78 ~~~~~~   83 (630)
T PRK11854         78 EGAADA   83 (630)
T ss_pred             CCCCCC
T ss_conf             666666


No 36 
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006256   This group of sequences are a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and percent identity (UPGMA) trees. Members contain two or three copies of the lipoyl-binding domain. Escherichia coli AceF is included in this set while mitochondrial and some other bacterial forms are excluded.  dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006096 glycolysis, 0045254 pyruvate dehydrogenase complex.
Probab=99.88  E-value=3.3e-22  Score=175.40  Aligned_cols=201  Identities=19%  Similarity=0.301  Sum_probs=128.1

Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf             35667888888115789877417897625898599995375333431777868989982378851326975899943777
Q gi|254780673|r    3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE   82 (467)
Q Consensus         3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege   82 (467)
                      .+|++|+.|....++++++-||++||+|++||.|.+||||||+|||||+++|+|+++.|+.|| .|++|..|.+|..++.
T Consensus       207 ~~v~vPDiGdn~~~~~V~evlV~vGDtV~~~QslItLE~DKA~~EvPa~asGvv~~v~v~vGD-~v~~G~~il~L~~~~s  285 (655)
T TIGR01348       207 QEVKVPDIGDNIEKVEVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGD-SVSTGDLILVLSVAGS  285 (655)
T ss_pred             EEEECCCCCCCCCCEEEEEEEECCCCEECCCCCEEEEECCEEEEEECCCCCCEEEEEEEEECC-EECCCCEEEEEEECCC
T ss_conf             154426537777750279999543777647886788706714787468985237899986566-7057888999710567


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             721122223321234422233223332223322100000-0112333310000000000000012235544311365069
Q gi|254780673|r   83 TALDIDKMLLEKPDVAISPSSKNTTLVFSNEDNDKVDHQ-KSKNDIQDSSFAHAPTSSITVREALRDAIAEEMRRDKDVF  161 (467)
Q Consensus        83 ~a~~~~~~~a~~~~aa~aaa~~~~s~~~~~a~~~a~~~~-~a~~~~~~~~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~  161 (467)
                      .......+..+.+.. .+++..+..++++++.+++.++. ....+..+....+.|..  ..-.++|. |+++        
T Consensus       286 tp~t~~~p~~a~p~~-~spa~~~~~aAa~pA~~~A~~~~p~~~~t~~~~~~~GrPvv--~A~P~vR~-LARe--------  353 (655)
T TIGR01348       286 TPATAEAPASAEPAA-QSPAAEQKEAAAAPAAAKAEAPAPVDAGTQNPAKVDGRPVV--HAAPAVRR-LARE--------  353 (655)
T ss_pred             CCCCHHCCCCCCCCC-CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE--ECCHHHHH-HHHH--------
T ss_conf             766413563458745-35034166767777658888778767665687623872300--17628899-9888--------


Q ss_pred             EEECCCCCCCC---CCCCCCCHHHHCCCCCEECCCCCHH----HHHHHHHHHHHCCCCCHH--HHHHH
Q ss_conf             99324344588---6653236475408111011666627----899899998871886445--66666
Q gi|254780673|r  162 IMGEEVAEYQG---AYKVTQGLLQEFGCERVIDTPITEH----GFAGIGIGASFAGLKPIV--EFMTF  220 (467)
Q Consensus       162 ~~gedv~~~~g---~f~~t~gl~~~fg~~R~~d~pi~E~----~~~G~a~G~A~~G~~Piv--~~~~~  220 (467)
                       ||=|+..-.|   .-++++.=.++| -+.-+-|+|-|+    +-++.+.|  ..|+-|+-  .|.-|
T Consensus       354 -~Gvdl~~vkGtg~~GRI~~EDVq~~-v~~~~GtGiPe~rA~aa~a~a~gG--~~~~~P~P~VdFsKF  417 (655)
T TIGR01348       354 -FGVDLSKVKGTGKKGRILREDVQKF-VKEAVGTGIPEKRAKAAAASAAGG--IPGLLPWPEVDFSKF  417 (655)
T ss_pred             -HCCEEEEEECCCCCCCCCHHHHHHH-HCCCCCCCCCCCCCCCCCCHHCCC--CCCCCCCCCCCCCCC
T ss_conf             -2701111013688886253579998-064336787532255331102031--004687785474325


No 37 
>KOG0559 consensus
Probab=99.86  E-value=2.6e-22  Score=176.14  Aligned_cols=77  Identities=31%  Similarity=0.604  Sum_probs=73.3

Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             356678888881157898774178976258985999953753334317778689899823788513269758999437
Q gi|254780673|r    3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus         3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      .++++|.++||++||+|.+|+|++||.|++|+.||||||||.++||+||++|+|.++|+++| ++|..|+.++.|...
T Consensus        73 vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~g-dtV~~g~~la~i~~g  149 (457)
T KOG0559          73 VTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDG-DTVTPGQKLAKISPG  149 (457)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHCCCCCCCCCHHHEEEECCCEEEECCCCCCCEEEEEECCCC-CCCCCCCEEEEECCC
T ss_conf             47746885121342419999647464213001311542153233136887642457740789-750478645773588


No 38 
>PRK11854 aceF dihydrolipoamide acetyltransferase; Validated
Probab=99.85  E-value=8.6e-21  Score=165.41  Aligned_cols=79  Identities=27%  Similarity=0.318  Sum_probs=71.7

Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf             35667888888115789877417897625898599995375333431777868989982378851326975899943777
Q gi|254780673|r    3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE   82 (467)
Q Consensus         3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege   82 (467)
                      .+|+||.+|+  +|++|++|+|++||.|++||+||||||||++||||||++|+|.+|++++| ++|+||++|++|.+.++
T Consensus       106 ~~~~~p~~g~--~~~~v~~~~~~~Gd~v~~~~~~~~vetdKa~~evps~~~G~~~~i~~~~g-~~v~~g~~i~~i~~~~~  182 (630)
T PRK11854        106 KDVHVPDIGS--DEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVG-DKVSTGSLIMVFEVAGE  182 (630)
T ss_pred             CEEECCCCCC--CCEEEEEEEECCCCEEECCCCEEEEECCCEEEEEECCCCCEEEEECCCCC-CEECCCCEEEEECCCCC
T ss_conf             2575788788--73269999724798872388157875252468852688816887126899-88447976788536788


Q ss_pred             CC
Q ss_conf             72
Q gi|254780673|r   83 TA   84 (467)
Q Consensus        83 ~a   84 (467)
                      ..
T Consensus       183 ~~  184 (630)
T PRK11854        183 AA  184 (630)
T ss_pred             CC
T ss_conf             77


No 39 
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006257   This group of sequences represent one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria, but not the Gram-positive bacteria.; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006090 pyruvate metabolic process, 0045254 pyruvate dehydrogenase complex.
Probab=99.84  E-value=1.1e-20  Score=164.67  Aligned_cols=337  Identities=22%  Similarity=0.280  Sum_probs=172.7

Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf             35667888888115789877417897625898599995375333431777868989982378851326975899943777
Q gi|254780673|r    3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE   82 (467)
Q Consensus         3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege   82 (467)
                      ..+.||.|++||+-|+|.+|.||+||.+++||.|+||||||||++.+-...|.|.+|||.+|+..|+.|+|+|+|....+
T Consensus       128 ~~V~lPALSP~M~~G~~~~W~KK~G~~~~~GD~~AE~ETDKAT~~F~~~~~GYLAKILVP~GT~~~~~~~P~CIIV~~~~  207 (584)
T TIGR01349       128 KVVLLPALSPSMETGTVARWEKKVGDKLKEGDLLAEVETDKATIDFEVEDEGYLAKILVPEGTRDVQLNTPLCIIVKKKE  207 (584)
T ss_pred             CEEECCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCEEECCEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCC
T ss_conf             32324565765566740000134576223375255542252022214635761899872888756637886489972600


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             72112222332123442223322333---222332210000001123333100000000000000122355443113650
Q gi|254780673|r   83 TALDIDKMLLEKPDVAISPSSKNTTL---VFSNEDNDKVDHQKSKNDIQDSSFAHAPTSSITVREALRDAIAEEMRRDKD  159 (467)
Q Consensus        83 ~a~~~~~~~a~~~~aa~aaa~~~~s~---~~~~a~~~a~~~~~a~~~~~~~~~~~~~~~~~TvRea~~~a~~e~m~~d~~  159 (467)
                      +...++.....+.........+...+   .+..++.+..+.+..+.........   ..++-+-. |-+-||.+    .+
T Consensus       208 D~~~FADY~~~E~~~~~~q~~~~~~~~~s~~~~a~~~~~~~~~~~~~~~~~~~~---~GriFAsP-LAk~LA~e----kg  279 (584)
T TIGR01349       208 DIDKFADYRVEEVSDLKSQTAPPSAPHYSKKSPAPAEQAPEPSSPAPLSDKESK---DGRIFASP-LAKKLAKE----KG  279 (584)
T ss_pred             CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCEECCH-HHHHHHHH----CC
T ss_conf             123442776311024667788777787677756776546788877666556688---88178276-89888875----39


Q ss_pred             EEEEECCCCCCCCCCCCCCCHHHHCCCC-------CEECCCCCHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             6999324344588665323647540811-------101166662789989999----88718864456666678999999
Q gi|254780673|r  160 VFIMGEEVAEYQGAYKVTQGLLQEFGCE-------RVIDTPITEHGFAGIGIG----ASFAGLKPIVEFMTFNFAMQAID  228 (467)
Q Consensus       160 ~~~~gedv~~~~g~f~~t~gl~~~fg~~-------R~~d~pi~E~~~~G~a~G----~A~~G~~Piv~~~~~~f~~~a~d  228 (467)
                      +=|  .+|.--|=--+++|-=.++|-|.       -.--.+-+-+...+.+.+    -|-.+..|   +.+..|--.-.+
T Consensus       280 idL--~~v~GsGP~GRI~K~Die~~~p~~aakPaG~~~~a~~~~~~a~tp~~~tssttA~~~~~~---~~tg~Y~d~P~s  354 (584)
T TIGR01349       280 IDL--SAVAGSGPNGRIVKKDIESFVPKSAAKPAGKPASANEAAAAAKTPAAKTSSTTAAKAAAP---VSTGSYEDVPLS  354 (584)
T ss_pred             CCC--CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC---CCCCCEEECCCC
T ss_conf             722--122240867847743110268754316665413331112036677532332223567788---888644667888


Q ss_pred             HHHHHHHHHHHHCCCCCCCCEE---EEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEE---------ECCHHC--CCHH
Q ss_conf             9998788674211776788879---9830244576444433216887632203138665---------221000--1055
Q gi|254780673|r  229 QIINSAAKTRYMSGGQITTSIV---FRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIP---------YTASDA--KGLL  294 (467)
Q Consensus       229 qi~n~~ak~~~~~gg~~~~p~v---~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P---------~~~~d~--~~ll  294 (467)
                      -||--.|+-+.-|  ++-.|=-   ++.-+           .-+..+..   -|+...+         =+-+|+  |.+.
T Consensus       355 niRk~IA~RL~eS--Kq~iPHyYvs~~~~~-----------~~LL~LR~---~LNa~~~~~~GkP~~KlSVND~iikA~a  418 (584)
T TIGR01349       355 NIRKIIAKRLLES--KQTIPHYYVSVECNV-----------DKLLKLRK---ELNAMAEEDDGKPRYKLSVNDFIIKASA  418 (584)
T ss_pred             CHHHHHHHHHHHH--HCCCCEEEEEEEEEH-----------HHHHHHHH---HHHHHCCCCCCCCEEEEEECHHHHHHHH
T ss_conf             3268999999887--568860799998861-----------06899999---9984467888885056660007999999


Q ss_pred             HHHHHCCCC-EEEEC--CCCCCCCCCCCCC---CCC-EECCCCCEEEEECCCCCEEEEHH-HHHHHHHHHHHH-HHC---
Q ss_conf             565413783-47640--2123333345334---663-12144311444316874586025-788888888753-100---
Q gi|254780673|r  295 KAAIRDPNP-VIFLE--NEILYGSSFEVPM---VDD-LVIPIGRARIHRQGSDVTIISFG-IGMTYATKAAIE-LEK---  362 (467)
Q Consensus       295 ~~ai~~~~P-vi~le--~~~ly~~~~~~p~---~~~-~~~p~Gk~~i~~~G~ditii~~G-~~~~~a~~aa~~-L~~---  362 (467)
                      .++-+-|+= .-+.+  +-++|.+..++--   .+. ...|     |+|.-+---|-..+ .|..++.+|.+. |.-   
T Consensus       419 ~Al~~vP~aN~~W~~~~~~Ir~y~~vDiSVAVatP~GliTP-----IVr~a~~Kgl~~IS~e~K~L~~rAr~~KL~P~Ef  493 (584)
T TIGR01349       419 LALREVPEANSSWTDVDDVIRRYKNVDISVAVATPDGLITP-----IVRNADAKGLSEISNEVKDLAKRARENKLKPEEF  493 (584)
T ss_pred             HHHHHCCCEEEEECCCCCEEEEECEEEEEEEEECCCCCCCC-----CEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             99872990253534777606861201488776568882545-----0721572467899999999999986437883245


Q ss_pred             CCCCEEEEECC
Q ss_conf             46752797330
Q gi|254780673|r  363 NGIDAELIDLR  373 (467)
Q Consensus       363 ~gi~~~vid~r  373 (467)
                      +|=..+|=||=
T Consensus       494 qGGTftISNLG  504 (584)
T TIGR01349       494 QGGTFTISNLG  504 (584)
T ss_pred             CCCCEEEECCC
T ss_conf             48875671231


No 40 
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006256   This group of sequences are a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and percent identity (UPGMA) trees. Members contain two or three copies of the lipoyl-binding domain. Escherichia coli AceF is included in this set while mitochondrial and some other bacterial forms are excluded.  dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006096 glycolysis, 0045254 pyruvate dehydrogenase complex.
Probab=99.83  E-value=2.6e-20  Score=162.01  Aligned_cols=81  Identities=27%  Similarity=0.408  Sum_probs=75.8

Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf             35667888888115789877417897625898599995375333431777868989982378851326975899943777
Q gi|254780673|r    3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE   82 (467)
Q Consensus         3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege   82 (467)
                      +||++|+.|..+.+|+|++.||++||+|++||.|.+||||||+|||||+.+|+|++|.|+.| |+++.|.+|++|+.++.
T Consensus         1 ~e~~vPDiG~n~~~g~v~evLV~~GD~V~~~Qslit~E~DKA~mEvPss~AG~ik~ikvkVG-Dt~~~G~~i~~l~~~~g   79 (655)
T TIGR01348         1 KEIKVPDIGDNIEEGEVIEVLVKVGDKVEAGQSLITLESDKASMEVPSSKAGIIKEIKVKVG-DTLKEGDVIALLEVSAG   79 (655)
T ss_pred             CEECCCCCCCCCCCEEEEEEEECCCCEECCCCCEEEECCCEEEEEECCCCCCEEEEEEEEEC-CCCCCCCEEEEECCCCC
T ss_conf             90005751466775138999868897432687468870671278406899973788975446-65477878999716653


Q ss_pred             CC
Q ss_conf             72
Q gi|254780673|r   83 TA   84 (467)
Q Consensus        83 ~a   84 (467)
                      +.
T Consensus        80 ~a   81 (655)
T TIGR01348        80 SA   81 (655)
T ss_pred             CC
T ss_conf             21


No 41 
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.82  E-value=2.5e-18  Score=148.11  Aligned_cols=292  Identities=20%  Similarity=0.220  Sum_probs=202.9

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCHH-HHCCCCCEECCCCCHHHHHHHHHHHHHCC-CCCH
Q ss_conf             000000012235544311365069993243445886-65323647-54081110116666278998999988718-8644
Q gi|254780673|r  138 SSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGA-YKVTQGLL-QEFGCERVIDTPITEHGFAGIGIGASFAG-LKPI  214 (467)
Q Consensus       138 ~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~-f~~t~gl~-~~fg~~R~~d~pi~E~~~~G~a~G~A~~G-~~Pi  214 (467)
                      ..+.-|.+..++|...-...|.++----|++...-. -+...-+. +.| ..|.|..||.|.+|..+.-|||+.| ++|+
T Consensus       352 ~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGialhGg~~py  430 (663)
T COG0021         352 KSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIALHGGFIPY  430 (663)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEHHHHHHHHHHHHHHHCCCEEE
T ss_conf             5523389999999999754734346672026676430146677787787-887058855887799998768874686222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCCCCHHHHHHH--HHHHHHHCCCEEEEEECCHHC
Q ss_conf             5666667899999999987886742117767888799830--244576444433216--887632203138665221000
Q gi|254780673|r  215 VEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP--NGAAARVAAQHSQCY--AAWYSHVPGLKVVIPYTASDA  290 (467)
Q Consensus       215 v~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p--~G~~~~~g~~Hs~~~--~~~~~~iPgl~V~~P~~~~d~  290 (467)
                      .. -|+.|.-++..+|+-.|         -+++|+++..-  .-+.+++|||| |-+  -+.|+.||||.|+-|+|..+.
T Consensus       431 gg-TFlvFsdY~r~AiRlaA---------Lm~l~~~~V~THDSIgvGEDGPTH-qPiEqLa~LRaiPN~~V~RPaD~~Et  499 (663)
T COG0021         431 GG-TFLVFSDYARPAVRLAA---------LMGLPVIYVFTHDSIGVGEDGPTH-QPVEQLASLRAIPNLSVIRPADANET  499 (663)
T ss_pred             CC-EEHHHHHHHHHHHHHHH---------HHCCCEEEEEECCCEECCCCCCCC-CCHHHHHHHHCCCCCEEEECCCHHHH
T ss_conf             20-34021753358799998---------608981899946712207878877-76888888652688604732883789


Q ss_pred             CCHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCC--CEECCCCCEEEEEC----CCCCEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf             1055565413-78347640212333334533466--31214431144431----68745860257888888887531004
Q gi|254780673|r  291 KGLLKAAIRD-PNPVIFLENEILYGSSFEVPMVD--DLVIPIGRARIHRQ----GSDVTIISFGIGMTYATKAAIELEKN  363 (467)
Q Consensus       291 ~~ll~~ai~~-~~Pvi~le~~~ly~~~~~~p~~~--~~~~p~Gk~~i~~~----G~ditii~~G~~~~~a~~aa~~L~~~  363 (467)
                      ...++.|+.. ++|+++.    |-+|+  +|..+  +.......+-++++    ..|++||++|+-|.+|++|++.|+++
T Consensus       500 ~~aw~~Al~~~~gPt~Li----ltRQn--lp~l~~t~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~  573 (663)
T COG0021         500 AAAWKYALERKDGPTALI----LTRQN--LPVLERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAE  573 (663)
T ss_pred             HHHHHHHHHCCCCCEEEE----EECCC--CCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             999999985678986999----96677--766577752212575279840577899889994665999999999999865


Q ss_pred             CCCEEEEECCCCCCCCHH--HHHHHHHHCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCC
Q ss_conf             675279733006857999--99999987198--99995788767678999999999677642898299717778--8888
Q gi|254780673|r  364 GIDAELIDLRTIRPMDWQ--TIFESVKKTGR--LVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPY  437 (467)
Q Consensus       364 gi~~~vid~r~l~Pld~~--~i~~sv~kt~~--~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~  437 (467)
                      ||.+.||.+-|...||..  ...+++-....  .|.||=+. ..|+...+            ..+=..|+...-  .-| 
T Consensus       574 ~i~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~-~~~W~ky~------------g~~g~~ig~~~FG~Sap-  639 (663)
T COG0021         574 GIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGS-ALGWYKYV------------GLDGAVIGMDSFGASAP-  639 (663)
T ss_pred             CCCEEEEECCCHHHHHCCCHHHHHHHCCCCCCCEEEEEECC-CCCHHHHC------------CCCCCEEEECCCCCCCC-
T ss_conf             98169994665588870899887764567766438887322-36636541------------88872884256767898-


Q ss_pred             CHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             966765608998999999999850
Q gi|254780673|r  438 AANLEKLALPNVDEIIESVESICY  461 (467)
Q Consensus       438 ~~~le~~~~p~~~~I~~av~~v~~  461 (467)
                      +..|-++|-.+++.|++++++++.
T Consensus       640 ~~~l~~~fGft~e~vv~~~~~~l~  663 (663)
T COG0021         640 GDELFKEFGFTVENVVAKAKSLLN  663 (663)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             789999959999999999999649


No 42 
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.80  E-value=2.3e-19  Score=155.36  Aligned_cols=72  Identities=35%  Similarity=0.681  Sum_probs=69.7

Q ss_pred             EECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE
Q ss_conf             6678888881157898774178976258985999953753334317778689899823788513269758999
Q gi|254780673|r    5 VTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI   77 (467)
Q Consensus         5 i~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i   77 (467)
                      |+||+||++|+||+|++|+|++||.|++||+||+|||||+.+|++||.+|+|.+|++++| +.|++|++|+.|
T Consensus         2 i~~P~lg~~~~eg~I~~~~v~~Gd~V~~Gd~l~~iEa~K~~~ei~ap~~G~v~~i~v~~G-~~V~~G~~l~~I   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEG-TKVEGDTPLVKI   73 (73)
T ss_pred             EECCCCCCCCEEEEEEEEEECCCCEECCCCEEEEEEEEEEEEEEECCCCEEEEEEEECCC-CEECCCCEEEEC
T ss_conf             777899998307999999926999997999999999500569986699989999995898-997899999979


No 43 
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.77  E-value=1.5e-18  Score=149.60  Aligned_cols=74  Identities=47%  Similarity=0.756  Sum_probs=71.2

Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE
Q ss_conf             356678888881157898774178976258985999953753334317778689899823788513269758999
Q gi|254780673|r    3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI   77 (467)
Q Consensus         3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i   77 (467)
                      ++|+||+||++|+||+|.+|+|++||.|++||+||++||||+++|++||.+|+|.++++++| +.|++|++||+|
T Consensus         1 ~~i~~P~~g~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~a~~~G~v~~i~~~~G-~~v~~G~~l~~i   74 (74)
T cd06849           1 TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEG-DTVPVGQVIAVI   74 (74)
T ss_pred             CCEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCC-CEECCCCEEEEC
T ss_conf             91775889998506999999927989997899999998585078410798999999987899-998899999979


No 44 
>pfam00364 Biotin_lipoyl Biotin-requiring enzyme. This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the model may not recognize the Glycine cleavage system H proteins.
Probab=99.73  E-value=9.2e-18  Score=144.17  Aligned_cols=73  Identities=33%  Similarity=0.592  Sum_probs=69.7

Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE
Q ss_conf             356678888881157898774178976258985999953753334317778689899823788513269758999
Q gi|254780673|r    3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI   77 (467)
Q Consensus         3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i   77 (467)
                      ++|+||.||++|+||+ ++|+|++||.|++||+||+|||||+.++|+||.+|+|.++++++| +.|++|++|+.|
T Consensus         1 tei~~P~lG~~~~~~~-~~w~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~i~~i~v~~G-~~V~~G~~l~~I   73 (73)
T pfam00364         1 TEIKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEG-DTVEVGDPLAKI   73 (73)
T ss_pred             CCEECCCCCCCCEECC-EEEEECCCCEECCCCEEEEEEECCCCCEECCCCCEEEEEEEECCC-CEECCCCEEEEC
T ss_conf             9347789879737234-848658989992899899999665352250898889999997998-998999999979


No 45 
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478     Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor.    This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=99.64  E-value=1.4e-14  Score=121.76  Aligned_cols=291  Identities=16%  Similarity=0.236  Sum_probs=201.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----CCCC--CCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCC--
Q ss_conf             000001223554431136506999324344-----5886--6532364754081110116666278998999988718--
Q gi|254780673|r  140 ITVREALRDAIAEEMRRDKDVFIMGEEVAE-----YQGA--YKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAG--  210 (467)
Q Consensus       140 ~TvRea~~~a~~e~m~~d~~~~~~gedv~~-----~~g~--f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G--  210 (467)
                      ..-|.+..+.|-......|.++----|++.     +++.  |...+.=..+| ..|+|..||.|.+|..+.-|||+-|  
T Consensus       355 ~ATR~~s~~~Ln~~~~~~p~l~GGSADLa~SN~T~~~~~~df~~~~~~~~n~-~GrYi~~GvREfaMgAI~NGiAlhGag  433 (675)
T TIGR00232       355 LATRKYSQEVLNAIANVLPELLGGSADLAPSNLTKLKGSGDFQLHENPLGNY-AGRYIHYGVREFAMGAIMNGIALHGAG  433 (675)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCHHCHHHCEEECCCCCCCCCCCCCCCC-CCCEEEEEEEECHHHHHHHHHHHHCCC
T ss_conf             8889999999998763152011553011100133504764454352444234-675488732304478999999983588


Q ss_pred             CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCCCCHHHHHHHH--HHHHHHCCCEEEEEE
Q ss_conf             8644566666-7899999999987886742117767888799830--2445764444332168--876322031386652
Q gi|254780673|r  211 LKPIVEFMTF-NFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP--NGAAARVAAQHSQCYA--AWYSHVPGLKVVIPY  285 (467)
Q Consensus       211 ~~Piv~~~~~-~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p--~G~~~~~g~~Hs~~~~--~~~~~iPgl~V~~P~  285 (467)
                      ++|+..  || .|.-++..-|+-.|         -+++|+++..-  .=+.+++|||| |-+|  +.||.||||.|.=|+
T Consensus       434 ~~p~Gg--TFL~F~dY~~~AiRLaA---------Lm~~~~~~V~THDSIgvGEDGPTH-QP~EqLa~LRa~PN~~vwRP~  501 (675)
T TIGR00232       434 FKPYGG--TFLVFVDYARPAIRLAA---------LMKLPVIYVYTHDSIGVGEDGPTH-QPIEQLASLRAIPNLSVWRPA  501 (675)
T ss_pred             CCCCCC--HHHHHHHHHHHHHHHHH---------HHCCCCEEEEECCEECCCCCCCCC-CCHHHHHHHHHCCCCEEECCC
T ss_conf             632541--46789986558999999---------717890899974401138788847-702230233220353162378


Q ss_pred             CCHHCCCHHHHHHH---CCCCEEEECCCCCCCCCCCCCCCC--CEEC-CCCC-EEEEE--CC-CCCEEEEHHHHHHHHHH
Q ss_conf             21000105556541---378347640212333334533466--3121-4431-14443--16-87458602578888888
Q gi|254780673|r  286 TASDAKGLLKAAIR---DPNPVIFLENEILYGSSFEVPMVD--DLVI-PIGR-ARIHR--QG-SDVTIISFGIGMTYATK  355 (467)
Q Consensus       286 ~~~d~~~ll~~ai~---~~~Pvi~le~~~ly~~~~~~p~~~--~~~~-p~Gk-~~i~~--~G-~ditii~~G~~~~~a~~  355 (467)
                      |..|.-..++.|+.   .+.|.+.    +|=+|  .+|..+  .-.+ .+-| +-|+.  ++ =||.||+.|+=|..|++
T Consensus       502 D~~E~aaa~~~a~~kas~~~Pt~L----~LtRQ--nLp~l~~T~~~~~~~~KGgYv~~d~~~~Pd~iliAtGSEV~La~~  575 (675)
T TIGR00232       502 DGNETAAAYKYALEKASQDAPTVL----ILTRQ--NLPQLERTESSLEKVLKGGYVLKDSKGEPDIILIATGSEVQLAVE  575 (675)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCEEE----EEECC--CCCCCCCCHHHHHHHHCCCCEEECCCCCCEEEEEECCCHHHHHHH
T ss_conf             732789999999996205898079----98057--777766427899986339807872587940899852736899999


Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCCH--HHHHHHHHHCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCC
Q ss_conf             8753100467527973300685799--999999987198--999957887676789999999996776428982997177
Q gi|254780673|r  356 AAIELEKNGIDAELIDLRTIRPMDW--QTIFESVKKTGR--LVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGR  431 (467)
Q Consensus       356 aa~~L~~~gi~~~vid~r~l~Pld~--~~i~~sv~kt~~--~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~  431 (467)
                      |++.|.++||.++||.|-++.=||.  +..++||=+.+-  +|+||=+. ..+|+...          .+...-..||..
T Consensus       576 a~~~L~~~~~kvrVVS~P~~~~f~~Qd~~Y~~svlp~~V~k~~~~Ea~~-~~~Wyky~----------~~~g~H~~~G~~  644 (675)
T TIGR00232       576 AAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTKRLAIEASA-AFEWYKYA----------GLEGKHAVLGID  644 (675)
T ss_pred             HHHHHHHCCCCEEEEECCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHH-HCCCHHHC----------CCCCCEEEECCC
T ss_conf             9999985498579996586466661228988730720123546653475-30111111----------545640055120


Q ss_pred             C--CCCCCCHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             7--88888966765608998999999999850
Q gi|254780673|r  432 D--VPMPYAANLEKLALPNVDEIIESVESICY  461 (467)
Q Consensus       432 d--~p~P~~~~le~~~~p~~~~I~~av~~v~~  461 (467)
                      .  ---| +..+=+.+--+++.|++.++++.+
T Consensus       645 ~FG~Sa~-g~~~~~~fGF~v~nv~~~ak~l~n  675 (675)
T TIGR00232       645 SFGESAP-GDKVFEKFGFTVENVVAKAKKLLN  675 (675)
T ss_pred             CCCCCCC-HHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf             3688785-004754148887899999999609


No 46 
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.57  E-value=4e-13  Score=111.63  Aligned_cols=241  Identities=23%  Similarity=0.271  Sum_probs=149.5

Q ss_pred             CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCCCCH
Q ss_conf             1011666627899899998871886445666667899999999987886742117767888799----830244576444
Q gi|254780673|r  188 RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF----RGPNGAAARVAA  263 (467)
Q Consensus       188 R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~----r~p~G~~~~~g~  263 (467)
                      .++.+- +|.+.+++++|+|++|.|-+..-+--.| .+.++++-       |..+.  .+|+|+    |+  |...++-.
T Consensus        50 ~~~~~E-~E~aA~~~~~GAs~aGaRa~taTSg~Gl-~lm~E~l~-------~a~~~--e~P~Vi~~~~R~--gpstglpt  116 (377)
T PRK08659         50 VFIQME-DEIASMAAIIGASWAGAKAMTATSGPGF-SLMQENIG-------YAAMT--ETPCVIVNVQRG--GPSTGQPT  116 (377)
T ss_pred             EEEECC-CHHHHHHHHHHHHHHCCCEEEEECCCCH-HHHHHHHH-------HHHHC--CCCEEEEEEECC--CCCCCCCC
T ss_conf             899727-5899999999998738866886457518-88888777-------87642--787799996347--78888877


Q ss_pred             HHHHHH--HHHHH-H-HCCCEEEEEECCHHCCCHHHHHH----HCCCCEEEECCCCCC-C-CCCCCCCCCC---------
Q ss_conf             433216--88763-2-20313866522100010555654----137834764021233-3-3345334663---------
Q gi|254780673|r  264 QHSQCY--AAWYS-H-VPGLKVVIPYTASDAKGLLKAAI----RDPNPVIFLENEILY-G-SSFEVPMVDD---------  324 (467)
Q Consensus       264 ~Hs~~~--~~~~~-~-iPgl~V~~P~~~~d~~~ll~~ai----~~~~Pvi~le~~~ly-~-~~~~~p~~~~---------  324 (467)
                      .++|+.  .+.|. | =-++-|++|+|++|++.+...|+    ++..||+++-+..+= . ...++|+.++         
T Consensus       117 ~~~q~D~~~~~~~~hGd~~~ivl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~Dg~lsh~~e~v~~p~~~~v~~~~~~~~  196 (377)
T PRK08659        117 KPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKAP  196 (377)
T ss_pred             CCCCHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCHHHCCCCCCCCC
T ss_conf             64626578640467777773999269879999999999999997688989971661024111054588665342322244


Q ss_pred             ------EE---------CC---CC--------------------------------------------CEEEEE-CCCCC
Q ss_conf             ------12---------14---43--------------------------------------------114443-16874
Q gi|254780673|r  325 ------LV---------IP---IG--------------------------------------------RARIHR-QGSDV  341 (467)
Q Consensus       325 ------~~---------~p---~G--------------------------------------------k~~i~~-~G~di  341 (467)
                            |.         .|   +|                                            ..+..+ +..|+
T Consensus       197 ~~~~~~~~~y~~~~~~v~p~~~~g~~~~~~~~g~~h~e~g~~~~~~e~~~~~~~~~~~K~~~~~~~~~~~e~~~~edAdi  276 (377)
T PRK08659        197 KVPPEAYKPFADPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEV  276 (377)
T ss_pred             CCCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCE
T ss_conf             47865448888887889988878767357732421234567445899999999999999999875236201424899989


Q ss_pred             EEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             58602578888888875310046752797330068579999999998719899995788767678999999999677642
Q gi|254780673|r  342 TIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYL  421 (467)
Q Consensus       342 tii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L  421 (467)
                      .||+||++...+.+|.+.|.++|+.+.++.+|++.||+.+.|.+.+++.++++++|-+.  |-+..+|...+      .-
T Consensus       277 ~IV~~GS~~~~~~eAvd~Lr~~G~kvg~l~ir~l~PfP~~~i~~~l~~~k~ViVvE~N~--GQl~~~i~~~~------~~  348 (377)
T PRK08659        277 VVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMNL--GQMSLEVERVV------KG  348 (377)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCCC--HHHHHHHHHHH------CC
T ss_conf             99996855789999999999649868899972206999899999985699899980775--68999999972------89


Q ss_pred             CCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             898299717778888896676560899899999999985
Q gi|254780673|r  422 DAPILTITGRDVPMPYAANLEKLALPNVDEIIESVESIC  460 (467)
Q Consensus       422 ~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~av~~v~  460 (467)
                      ..++..|...|= .          -.+.++|+++++++.
T Consensus       349 ~~~~~~i~k~~G-~----------p~~~~eI~e~i~~~~  376 (377)
T PRK08659        349 RAKVKGINKIGG-E----------LITPEEILEKIKEVA  376 (377)
T ss_pred             CCCEEEEEEECC-C----------CCCHHHHHHHHHHHH
T ss_conf             986468832589-8----------179999999999863


No 47 
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.55  E-value=1.8e-12  Score=107.07  Aligned_cols=243  Identities=18%  Similarity=0.229  Sum_probs=149.4

Q ss_pred             EECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHH-HH
Q ss_conf             01166662789989999887188644566666789999999998788674211776788879983024457644443-32
Q gi|254780673|r  189 VIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQH-SQ  267 (467)
Q Consensus       189 ~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~H-s~  267 (467)
                      ++. .-+|.+.+++|+|+|++|.|-++.-+--.| .++.|.+.       +..+  ..+|+|+-...-.+...|+++ .|
T Consensus        50 ~~q-~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl-~lm~E~l~-------~aa~--~e~P~Viv~~~R~gPs~g~t~~eQ  118 (350)
T PRK07119         50 FVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGI-SLKQEGIS-------YLAG--AELPCVIVNIMRGGPGLGNIQPSQ  118 (350)
T ss_pred             EEE-CCCHHHHHHHHHHHHHHCCCEEEEECCCCH-HHHHHHHH-------HHHH--CCCCEEEEEEECCCCCCCCCCHHH
T ss_conf             998-587799999999999729964764367428-88775889-------9985--488749999975888866741277


Q ss_pred             HH--HHHHH--HH-CCCEEEEEECCHHCCCHHHHHH----HCCCCEEEECCCCCCCC--CCCCCCC-------CCEEC--
Q ss_conf             16--88763--22-0313866522100010555654----13783476402123333--3453346-------63121--
Q gi|254780673|r  268 CY--AAWYS--HV-PGLKVVIPYTASDAKGLLKAAI----RDPNPVIFLENEILYGS--SFEVPMV-------DDLVI--  327 (467)
Q Consensus       268 ~~--~~~~~--~i-Pgl~V~~P~~~~d~~~ll~~ai----~~~~Pvi~le~~~ly~~--~~~~p~~-------~~~~~--  327 (467)
                      +.  .+.+.  |= =.+-|++|+|++|++.+...|+    ++..||+++-+..+=..  ..+.|+.       .++..  
T Consensus       119 ~D~~~a~~~~ghGd~~~ivl~p~s~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~e~v~~~~~~~~~~~~~~~~~~g  198 (350)
T PRK07119        119 ADYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPERASTELPAKDWAVTG  198 (350)
T ss_pred             HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             78999997277886534998179999999999999999999889989973552121101205786345667887765278


Q ss_pred             ---------------C---------C-CCEEE----------E-ECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             ---------------4---------4-31144----------4-316874586025788888888753100467527973
Q gi|254780673|r  328 ---------------P---------I-GRARI----------H-RQGSDVTIISFGIGMTYATKAAIELEKNGIDAELID  371 (467)
Q Consensus       328 ---------------p---------~-Gk~~i----------~-~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid  371 (467)
                                     |         + .|.+.          + .+..|+.||+||++...+.+|.+.|.++|+.+.++.
T Consensus       199 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~k~~~i~~~~~~~e~y~~~da~~~ii~~Gs~~~~~~eav~~lr~~G~kvg~l~  278 (350)
T PRK07119        199 TKGREPNIITSLFLDPEELEKHNWRLQAKYAEIEENEVRYEEYNTDDAELVLVAYGTSSRIAKSAVDMAREEGIKVGLFR  278 (350)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEECEEE
T ss_conf             88888875587777989999999999999999885224165517888999999956346899999999997598126687


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHH
Q ss_conf             30068579999999998719899995788767678999999999677642898299717778888896676560899899
Q gi|254780673|r  372 LRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDE  451 (467)
Q Consensus       372 ~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~  451 (467)
                      ++++.||+.+.|.+.+++.++++++|+.  .|=+..+|-  +...    -..++..++..|           -..++.++
T Consensus       279 ~~~~~PfP~~~i~~~l~~~~~viVvE~n--~Gql~~~v~--~~~~----~~~~v~~~~k~~-----------G~~~~~~e  339 (350)
T PRK07119        279 PITLWPFPEKALEKLADKVKGFLSVEMS--NGQMVEDVR--LAVN----GKKPVEFYGRMG-----------GMVPTPDE  339 (350)
T ss_pred             ECEECCCCHHHHHHHHHCCCEEEEECCC--CCHHHHHHH--HHHC----CCCCEEEECCCC-----------CCCCCHHH
T ss_conf             6510689999999999469989998588--868999999--9828----999746853669-----------98889999


Q ss_pred             HHHHHHHHHC
Q ss_conf             9999999850
Q gi|254780673|r  452 IIESVESICY  461 (467)
Q Consensus       452 I~~av~~v~~  461 (467)
                      |++++|++..
T Consensus       340 i~~~i~~~~~  349 (350)
T PRK07119        340 ILEKIKEIAG  349 (350)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999857


No 48 
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.51  E-value=2.3e-12  Score=106.29  Aligned_cols=237  Identities=19%  Similarity=0.197  Sum_probs=147.1

Q ss_pred             CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCCCCH
Q ss_conf             1011666627899899998871886445666667899999999987886742117767888799----830244576444
Q gi|254780673|r  188 RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF----RGPNGAAARVAA  263 (467)
Q Consensus       188 R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~----r~p~G~~~~~g~  263 (467)
                      .++.+ =+|.+.+++++|+|.+|.|-+..-+--.| .+..+++- .+      .+  ..+|+|+    |+  |...|.-.
T Consensus        49 ~~~q~-E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl-~lm~E~l~-~a------~~--~e~P~Vi~~~~R~--gPstGlpt  115 (375)
T PRK09627         49 TFIQM-EDEISGISVALGASMSGVKSMTASSGPGI-SLKAEQIG-LG------FM--AEIPLVIVNVMRG--GPSTGLPT  115 (375)
T ss_pred             EEEEE-CCHHHHHHHHHHHHHHCCCEEEECCCCCH-HHHHHHHH-HH------HH--CCCCEEEEEEECC--CCCCCCCC
T ss_conf             89993-76899999999999749825762277548-88888988-99------86--3798699998758--88768866


Q ss_pred             HHHHHH--HHHHH---HHCCCEEEEEECCHHCCCHHHHHH----HCCCCEEEECCCCCC-CC-CCCCCC-----------
Q ss_conf             433216--88763---220313866522100010555654----137834764021233-33-345334-----------
Q gi|254780673|r  264 QHSQCY--AAWYS---HVPGLKVVIPYTASDAKGLLKAAI----RDPNPVIFLENEILY-GS-SFEVPM-----------  321 (467)
Q Consensus       264 ~Hs~~~--~~~~~---~iPgl~V~~P~~~~d~~~ll~~ai----~~~~Pvi~le~~~ly-~~-~~~~p~-----------  321 (467)
                      .+.|+.  ...+.   .. ++.|++|+|++|++.+...|+    +...||+++-+..+= .. ...+|+           
T Consensus       116 ~~~q~Dl~~~~~~~hGd~-~~ivl~p~s~qEa~d~t~~Af~lAE~~~~PVivl~D~~lsh~~~~v~~p~~~~v~~~~~~~  194 (375)
T PRK09627        116 RVAQGDVNQAKNPTHGDF-KSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVEKMIINR  194 (375)
T ss_pred             CCCCCCHHHHHCCCCCCC-CCEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCEECCCHHHCCCCCCCC
T ss_conf             324340888633778763-4067746789999999999999999868988997133100221332269957633455664


Q ss_pred             ------CCCEE-----------C-CC----------------------------------CCEE----------EE-ECC
Q ss_conf             ------66312-----------1-44----------------------------------3114----------44-316
Q gi|254780673|r  322 ------VDDLV-----------I-PI----------------------------------GRAR----------IH-RQG  338 (467)
Q Consensus       322 ------~~~~~-----------~-p~----------------------------------Gk~~----------i~-~~G  338 (467)
                            ..+|.           + |.                                  .|-+          .. .+.
T Consensus       195 ~~~~~~~~~~~py~~~~~~p~~~~p~~~~~~~~~~g~eh~~~g~~~e~~~~~~~~~~r~~~k~~~~~~~~~~~e~y~~ed  274 (375)
T PRK09627        195 KEFEGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDGKIVGKLIDRLFNKIESHQDEIEEYEEYMLDD  274 (375)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCC
T ss_conf             33578855663667899998645898876179943533255578666999999999999999998765336420026899


Q ss_pred             CCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             87458602578888888875310046752797330068579999999998719899995788767678999999999677
Q gi|254780673|r  339 SDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVF  418 (467)
Q Consensus       339 ~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f  418 (467)
                      .|+.||+||++...+.+|.+.|+++|+.+.++-+|++.||+.+.|.+.+++.++++++|..  .|.+...|...+   + 
T Consensus       275 Ae~~iV~~GSt~~~~~eAv~~Lr~~G~kvg~l~~~~l~PfP~~~i~e~l~~~k~v~VvE~N--~Gq~~~~i~~~~---~-  348 (375)
T PRK09627        275 AEILIIAYGSVSLSAKEAINRLREEGIKVGLFRPITLWPSPAKRLKEIGDKFEKILVIELN--MGQYLEEIERVM---Q-  348 (375)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEEECC--CHHHHHHHHHHH---C-
T ss_conf             8789999564378999999999974990537975245799989999999579989998078--159999999973---8-


Q ss_pred             HHCCCCCEEECCCCCCCCCCHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf             64289829971777888889667656089-989999999998
Q gi|254780673|r  419 DYLDAPILTITGRDVPMPYAANLEKLALP-NVDEIIESVESI  459 (467)
Q Consensus       419 ~~L~~p~~ri~~~d~p~P~~~~le~~~~p-~~~~I~~av~~v  459 (467)
                         ..++..+.-.|            ..| +.++|++++|++
T Consensus       349 ---~~~~~~i~k~~------------G~pf~~~ei~~~i~ei  375 (375)
T PRK09627        349 ---RDDFHFLGKAN------------GRPISPSEIIAKVKEL  375 (375)
T ss_pred             ---CCCCCEEEEEC------------CCCCCHHHHHHHHHHC
T ss_conf             ---98751570069------------9857999999999619


No 49 
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.47  E-value=6.1e-12  Score=103.34  Aligned_cols=280  Identities=19%  Similarity=0.215  Sum_probs=190.3

Q ss_pred             HHHHHHHHH------HCCCCCEEEEECCCCCCCCCCCC----------------CCCHHH-HCCCCCEECCCCCHHHHHH
Q ss_conf             122355443------11365069993243445886653----------------236475-4081110116666278998
Q gi|254780673|r  145 ALRDAIAEE------MRRDKDVFIMGEEVAEYQGAYKV----------------TQGLLQ-EFGCERVIDTPITEHGFAG  201 (467)
Q Consensus       145 a~~~a~~e~------m~~d~~~~~~gedv~~~~g~f~~----------------t~gl~~-~fg~~R~~d~pi~E~~~~G  201 (467)
                      .+.++++|.      |..--.|=+-|||+..  |.|--                -..|.+ .=|.-.++|+++||-+.+|
T Consensus       891 ~iDWg~AE~LAfgSLL~eG~~VRLsGQD~~R--GTFshRHavl~Dq~t~~~y~PL~~l~~~~q~~f~v~nS~LSE~avLG  968 (1234)
T PRK12270        891 KIDWAFGELLAFGSLLLEGKPVRLSGQDSRR--GTFSQRHAVLIDRETGEEFTPLQNLADDSQGKFLVYDSLLSEYAAMG  968 (1234)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEECCCCCC--CCCCCCCEEEEECCCCCEEEEHHHCCCCCCCEEEEECCCCHHHHHHH
T ss_conf             9778999999999997089705752540465--43231213564136784785776648365851899815213555555


Q ss_pred             HHHHHHHCCCCCH--HHHHHHHHHH--H-HHHHHHHHH-HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH-HHHHHHHH
Q ss_conf             9999887188644--5666667899--9-999999878-86742117767888799830244576444433-21688763
Q gi|254780673|r  202 IGIGASFAGLKPI--VEFMTFNFAM--Q-AIDQIINSA-AKTRYMSGGQITTSIVFRGPNGAAARVAAQHS-QCYAAWYS  274 (467)
Q Consensus       202 ~a~G~A~~G~~Pi--v~~~~~~f~~--~-a~dqi~n~~-ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~~~~~~  274 (467)
                      +--|+++.--.-.  =|-||.||.-  | -+||.|... +||..+|      .+|.-.|.| +-|+||.|| -.+|-++-
T Consensus       969 FEYGYS~~~P~~LviWEAQFGDFaNGAQvIIDQFIsSgE~KW~~~S------gLVlLLPHG-yEGQGPEHSSARiERfLQ 1041 (1234)
T PRK12270        969 FEYGYSVGNPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRS------GVVLLLPHG-YEGQGPDHSSARIERFLQ 1041 (1234)
T ss_pred             HHHCCCCCCCCCEEEHHHHHHHHHCCCEEEEEEEEECHHHHHHHHC------CEEEECCCC-CCCCCCCCCHHHHHHHHH
T ss_conf             5524433689733540655534405864898657861777664135------757886788-888996521466899998


Q ss_pred             --HHCCCEEEEEECCHHCCCHHHH-HHH-CCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEE-EEE-----CCCCC--E
Q ss_conf             --2203138665221000105556-541-3783476402123333345334663121443114-443-----16874--5
Q gi|254780673|r  275 --HVPGLKVVIPYTASDAKGLLKA-AIR-DPNPVIFLENEILYGSSFEVPMVDDLVIPIGRAR-IHR-----QGSDV--T  342 (467)
Q Consensus       275 --~iPgl~V~~P~~~~d~~~ll~~-ai~-~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~-i~~-----~G~di--t  342 (467)
                        .=.||.|+.|++|..+..||+. ++| ...|.|++-+|.|.+....+-..+||.-  |+-+ ++-     +-+++  .
T Consensus      1042 LcAe~NmqV~~pTTPAqyFHlLRRQ~~r~~RKPLIv~tPKSLLRh~~a~S~l~e~~~--G~F~~Vi~D~~~~~~~~VkRv 1119 (1234)
T PRK12270       1042 LCAEGNMTVAQPSTPANYFHLLRRQALSGIRRPLVVFTPKSMLRNKAAVSDVEDFTE--GKFRSVIDDPTVGDPAKVKRV 1119 (1234)
T ss_pred             HCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCCCCCCHHHCCC--CCCEECCCCCCCCCHHHCCEE
T ss_conf             610478599934983899999999874157888698584787458334799788189--954461689877884108389


Q ss_pred             EEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC---EEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             86025788888888753100467527973300685799999999987198---999957887676789999999996776
Q gi|254780673|r  343 IISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR---LVTVEEGYPQSSVGSTIANQVQRKVFD  419 (467)
Q Consensus       343 ii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~---~i~vee~~~~gg~g~~i~~~i~e~~f~  419 (467)
                      |+|.|-..+.-++..+....+  ++-+|-+--|.||+.+.|.+.++|+..   ++-+.|...+-|-=+.+..++.+....
T Consensus      1120 ilCSGKvYYDL~~~R~~~~~~--dvAIvRiEQLyPfP~~~l~~~l~~Ypna~e~vW~QEEP~N~GAW~fv~~rl~~~l~~ 1197 (1234)
T PRK12270       1120 LLCSGKLYYDLAARREKDGRD--DVAIVRVEQLYPLPERRLRETLARYPNAEEVFWVQEEPANQGAWPFMGLNLPELLPK 1197 (1234)
T ss_pred             EEECCHHHHHHHHHHHHCCCC--CEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             980672199999999976999--769998400289988999999974899886899534866357788899999998534


Q ss_pred             HCCCCCEEECCCCCCCCCCH
Q ss_conf             42898299717778888896
Q gi|254780673|r  420 YLDAPILTITGRDVPMPYAA  439 (467)
Q Consensus       420 ~L~~p~~ri~~~d~p~P~~~  439 (467)
                        ..+++.++.+....|...
T Consensus      1198 --~~~l~yvgR~~sASpAtG 1215 (1234)
T PRK12270       1198 --LRGLRRVSRRASSSPATG 1215 (1234)
T ss_pred             --CCCEEEECCCCCCCCCCC
T ss_conf             --885268577887888877


No 50 
>KOG0558 consensus
Probab=99.45  E-value=1e-13  Score=115.71  Aligned_cols=78  Identities=26%  Similarity=0.413  Sum_probs=72.9

Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCC
Q ss_conf             3566788888811578987741789762589859999537533343177786898998237885132697589994377
Q gi|254780673|r    3 ILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEG   81 (467)
Q Consensus         3 ~ei~mP~lgesm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~eg   81 (467)
                      +.+++-+.||+|.|.++.+|.||+||+|++-|.||||.+|||++++.|.++|+|++|.-+.+ +...||.++.-++.++
T Consensus        65 v~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~d-dia~VGk~Lvd~eve~  142 (474)
T KOG0558          65 VQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPD-DIAKVGKPLVDLEVED  142 (474)
T ss_pred             EEEEHHHCCCCCEEEEEEEEHHHCCCCHHHHCCHHHCCCCCCEEEEEEEECCEEEEEEECCH-HHHHHCCCEEEEEECC
T ss_conf             98771230464005540110030697388742223020465248998640656778740733-4667386115566115


No 51 
>PRK09404 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.43  E-value=3.3e-11  Score=98.19  Aligned_cols=282  Identities=19%  Similarity=0.234  Sum_probs=190.4

Q ss_pred             HHHHHHHHHH------HCCCCCEEEEECCCCCCCCCCCCC----------------CCHHHHCCCCCEECCCCCHHHHHH
Q ss_conf             0122355443------113650699932434458866532----------------364754081110116666278998
Q gi|254780673|r  144 EALRDAIAEE------MRRDKDVFIMGEEVAEYQGAYKVT----------------QGLLQEFGCERVIDTPITEHGFAG  201 (467)
Q Consensus       144 ea~~~a~~e~------m~~d~~~~~~gedv~~~~g~f~~t----------------~gl~~~fg~~R~~d~pi~E~~~~G  201 (467)
                      +.+.+|++|.      |...-.|=+-||||..  |.|---                ..|.+.=|+-.|+|.|+||.+.+|
T Consensus       587 ~~iDWa~AE~LAf~SLl~eG~~VRlsGQD~~R--GTFshRHavl~dq~t~~~y~pL~~~~~~q~~~~v~nS~LSE~avlg  664 (931)
T PRK09404        587 KPIDWGMAEALAFASLLDEGYPVRLSGQDSGR--GTFSHRHAVLHDQKTGETYIPLNHLSDGQASFEVIDSPLSEEAVLG  664 (931)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC--CCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECHHHHHHHHH
T ss_conf             87555788999999998669626644641566--5434531588863799588576555466864999934125777765


Q ss_pred             HHHHHHHCCCCCH--HHHHHHHHH--HH-HHHHHHHHH-HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH-HHHHHHH-
Q ss_conf             9999887188644--566666789--99-999999878-86742117767888799830244576444433-2168876-
Q gi|254780673|r  202 IGIGASFAGLKPI--VEFMTFNFA--MQ-AIDQIINSA-AKTRYMSGGQITTSIVFRGPNGAAARVAAQHS-QCYAAWY-  273 (467)
Q Consensus       202 ~a~G~A~~G~~Pi--v~~~~~~f~--~~-a~dqi~n~~-ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~~~~~-  273 (467)
                      +--|+++.--+-.  =|-||+||.  .| -+||.|..+ .||..+||      +|.-.|.| .-|+||.|| -.+|-++ 
T Consensus       665 FEyGYs~~~p~~LviWEAQFGDF~NgAQiiiDqfi~s~e~KW~~~sg------lvllLPHG-yeGqGPEHSSaR~ERfLQ  737 (931)
T PRK09404        665 FEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSG------LVMLLPHG-YEGQGPEHSSARLERFLQ  737 (931)
T ss_pred             HHHHHCCCCCCCEEEEHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCC------EEEECCCC-CCCCCCCCCCCCHHHHHH
T ss_conf             45300025887505424331455467348975001036777610167------48987787-678896444410789997


Q ss_pred             -HHHCCCEEEEEECCHHCCCHHHHHH-H-CCCCEEEECCCCCCCCCCCCCCCCCEECCCCCE-EEEEC-----CCCC--E
Q ss_conf             -3220313866522100010555654-1-378347640212333334533466312144311-44431-----6874--5
Q gi|254780673|r  274 -SHVPGLKVVIPYTASDAKGLLKAAI-R-DPNPVIFLENEILYGSSFEVPMVDDLVIPIGRA-RIHRQ-----GSDV--T  342 (467)
Q Consensus       274 -~~iPgl~V~~P~~~~d~~~ll~~ai-~-~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~-~i~~~-----G~di--t  342 (467)
                       ..=.||.|+.|++|+.+..+|+.=+ | ...|.|++-+|.|.+....+-..+|+.-  |.- +++-+     -+++  .
T Consensus       738 l~ae~N~~V~~~ttpA~~FH~LRrQ~~r~~rkPLiv~tpKsLLR~~~~~S~~~e~~~--g~F~~vi~d~~~~~~~~v~rv  815 (931)
T PRK09404        738 LCAEDNMQVCNPTTPAQYFHLLRRQVLRPFRKPLVVMTPKSLLRHKLAVSSLEELAE--GSFQPVIGDIDELDPKKVKRV  815 (931)
T ss_pred             HCHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHCCCCCCCCHHHCCC--CCCEEECCCCCCCCHHCCCEE
T ss_conf             530238189905987999999999850346787598473676348545799899079--945163279876884008689


Q ss_pred             EEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC---EEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             86025788888888753100467527973300685799999999987198---999957887676789999999996776
Q gi|254780673|r  343 IISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR---LVTVEEGYPQSSVGSTIANQVQRKVFD  419 (467)
Q Consensus       343 ii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~---~i~vee~~~~gg~g~~i~~~i~e~~f~  419 (467)
                      |+|.|-..+.-+++.+....+  ++-+|-+--|.||+.+.|.+.++|...   ++-+.|..++-|-=+.|..++.+-. .
T Consensus       816 i~CsGKvyydL~~~r~~~~~~--~vaivRiEqL~PfP~~~l~~~l~~y~~~~~~vW~QEEp~N~GaW~~v~~rl~~~~-~  892 (931)
T PRK09404        816 VLCSGKVYYDLLEARRKRGID--DVAIVRIEQLYPFPHKELAAELAKYPNVKEVVWCQEEPKNQGAWYFIQHHLEEVL-P  892 (931)
T ss_pred             EECCCHHHHHHHHHHHHCCCC--CEEEEEEHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH-H
T ss_conf             982768999999999976999--7799982112799789999999868998717996557563578889999999986-2


Q ss_pred             HCCCCCEEECCCCCCCCCCH
Q ss_conf             42898299717778888896
Q gi|254780673|r  420 YLDAPILTITGRDVPMPYAA  439 (467)
Q Consensus       420 ~L~~p~~ri~~~d~p~P~~~  439 (467)
                      .-...+.-+|.+....|...
T Consensus       893 ~~~~~~~y~gR~~~aspA~G  912 (931)
T PRK09404        893 EGAQKLRYAGRPASASPAVG  912 (931)
T ss_pred             HCCCCEEEECCCCCCCCCCC
T ss_conf             23872279567988888878


No 52 
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.30  E-value=9.7e-12  Score=101.93  Aligned_cols=61  Identities=26%  Similarity=0.380  Sum_probs=58.1

Q ss_pred             EEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE
Q ss_conf             57898774178976258985999953753334317778689899823788513269758999
Q gi|254780673|r   16 EGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI   77 (467)
Q Consensus        16 eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i   77 (467)
                      .|+|.+|++++||.|++||+||+||++|..++++||.+|+|.++++++| +.|..|++|+.|
T Consensus         7 ~G~v~~~~V~~Gd~V~~G~~l~~iE~mK~~~~i~a~~~G~v~~i~~~~G-~~V~~G~~L~~i   67 (67)
T cd06850           7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEG-DQVEAGQLLVVI   67 (67)
T ss_pred             CEEEEEEEECCCCEECCCCEEEEEEECCCEEEEEECCCEEEEEEEECCC-CEECCCCEEEEC
T ss_conf             8899999957999997899999999366119999689999999997898-998999999979


No 53 
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.28  E-value=1.1e-09  Score=87.53  Aligned_cols=213  Identities=15%  Similarity=0.174  Sum_probs=132.8

Q ss_pred             CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCCCCH
Q ss_conf             1011666627899899998871886445666667899999999987886742117767888799----830244576444
Q gi|254780673|r  188 RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF----RGPNGAAARVAA  263 (467)
Q Consensus       188 R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~----r~p~G~~~~~g~  263 (467)
                      .|+.+ =+|.+.+++++|++.+|.|-.-.-+--.| ++..++|.       |.+|.  .+|+|+    |+..+ .+..-.
T Consensus        52 ~~iq~-EsE~aAi~a~~GAs~aGara~TaTSg~Gl-~LM~E~l~-------~aag~--elPiVi~v~~R~~~~-p~~i~~  119 (395)
T PRK08367         52 EFIKV-ESEHSAISACVGASAAGVRTFTATASQGL-ALMHEILF-------IAAGM--RLPIVMAIGNRALSA-PINIWN  119 (395)
T ss_pred             EEEEE-CCHHHHHHHHHHHHHHCCCEEEECCCCCH-HHHHHHHH-------HHHHH--HCCEEEEECCCCCCC-CCCCCC
T ss_conf             79985-87899999999888529786851478738-88743899-------99871--177899970457888-877651


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH----CCC--CEEEECCCCCCC---CCCCCCCC------------
Q ss_conf             433216887632203138665221000105556541----378--347640212333---33453346------------
Q gi|254780673|r  264 QHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR----DPN--PVIFLENEILYG---SSFEVPMV------------  322 (467)
Q Consensus       264 ~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~--Pvi~le~~~ly~---~~~~~p~~------------  322 (467)
                      .|+.   .+...--|+-+++|+|.+|+..+...|++    ...  ||+++-+..+-.   +..++|+.            
T Consensus       120 d~~D---~~~~rd~G~i~l~~~n~QEa~D~~i~Af~iAE~~rv~lPv~v~~Dgf~lsH~~e~v~ip~~e~v~~~l~~~~p  196 (395)
T PRK08367        120 DWQD---TISQRDTGWLQFYAENNQEALDLILIAYKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEP  196 (395)
T ss_pred             HHHH---HHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHCCEEEEECCCHHHHHHHCCCCCC
T ss_conf             1566---8756787529982687677799999999999875367877997163564531500307988999865032343


Q ss_pred             ------------------CC-E---EC----------------------CCCC----EEE-EECCCCCEEEEHHHHHHHH
Q ss_conf             ------------------63-1---21----------------------4431----144-4316874586025788888
Q gi|254780673|r  323 ------------------DD-L---VI----------------------PIGR----ARI-HRQGSDVTIISFGIGMTYA  353 (467)
Q Consensus       323 ------------------~~-~---~~----------------------p~Gk----~~i-~~~G~ditii~~G~~~~~a  353 (467)
                                        ++ |   ..                      -+|+    .+- --+.-|+.||+||++...+
T Consensus       197 ~~~~ldp~~P~~~g~~~~~~~~~e~~~~~~~~~~~~~~vi~~~~~e~~~~~gr~y~~ie~y~~eDAe~viV~~GS~~~~~  276 (395)
T PRK08367        197 KHAYLDPARPITQGTLAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTL  276 (395)
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCHHHH
T ss_conf             10247976774557878997055445424488987699999999999998652114057617999889999817428999


Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             888753100467527973300685799999999987198999957887676789999999996
Q gi|254780673|r  354 TKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRK  416 (467)
Q Consensus       354 ~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~  416 (467)
                      .+|.+.|.++|+.+.++.+|+++||+.+.|.+..++.++++|+|-+...|. +.-+..-+..-
T Consensus       277 k~AVd~lR~~G~KVGllr~r~~rPFP~e~l~~~~k~~k~V~Vldr~~s~g~-~g~l~~ev~~~  338 (395)
T PRK08367        277 KEWVDKKREEGYKVGAAKITVYRPFPVEEIRELAKKAKVLAFLEKNITFGL-YGAVFQDASAA  338 (395)
T ss_pred             HHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCC-CCCHHHHHHHH
T ss_conf             999999997498576899888589999999998657988999868899888-98159999999


No 54 
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.28  E-value=1.3e-09  Score=86.89  Aligned_cols=250  Identities=22%  Similarity=0.346  Sum_probs=150.5

Q ss_pred             CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCCCCH
Q ss_conf             1011666627899899998871886445666667899999999987886742117767888799----830244576444
Q gi|254780673|r  188 RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF----RGPNGAAARVAA  263 (467)
Q Consensus       188 R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~----r~p~G~~~~~g~  263 (467)
                      .++.+ =+|.+.+++++|++.+|.|-.-.-+--.| ++-.++|.       |.+|.  .+|+|+    |++.+ .+..-.
T Consensus        58 ~~iq~-EsE~aA~~a~~GAs~aGara~TaTSspGl-~LM~E~l~-------~aag~--~lP~Vi~vv~R~~~~-~l~i~~  125 (407)
T PRK09622         58 EFVMV-ESEHAAMSACVGAAAAGGRVATATSSQGL-ALMVEVLY-------QASGM--RLPIVLNLVNRALAA-PLNVNG  125 (407)
T ss_pred             EEEEE-CCHHHHHHHHHHHHHHCCCEEEECCCCCH-HHHHHHHH-------HHHHH--HCCEEEEEECCCCCC-CCCCCC
T ss_conf             69985-57899999999998538786730478738-77520899-------99985--278488874156788-888877


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHH------HCCCCEEEECCCCC----------------------CCC
Q ss_conf             43321688763220313866522100010555654------13783476402123----------------------333
Q gi|254780673|r  264 QHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAI------RDPNPVIFLENEIL----------------------YGS  315 (467)
Q Consensus       264 ~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai------~~~~Pvi~le~~~l----------------------y~~  315 (467)
                      .||+   .+...--|+-+++|++++|+..+...|+      +...||+++-+..+                      |..
T Consensus       126 dhsD---~m~~rdtG~i~l~~~svQE~~D~~i~Af~iAE~~~~r~Pv~v~~DGf~~sH~~~~v~~~~~e~~~~~~~~~~p  202 (407)
T PRK09622        126 DHSD---MYLSRDSGWISLCTCNPQEAYDFTLMAFRIAEDQKVRVPTIVNQDGFLCSHTAQNVRPLSDAVAYQFVGEYQP  202 (407)
T ss_pred             CHHH---HHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf             8899---9970588739983799899999999999998875778888997302354156563335827777753355677


Q ss_pred             -----CCCCCC------CCCEECC--------------------------CCC----EEEEE-CCCCCEEEEHHHHHHHH
Q ss_conf             -----345334------6631214--------------------------431----14443-16874586025788888
Q gi|254780673|r  316 -----SFEVPM------VDDLVIP--------------------------IGR----ARIHR-QGSDVTIISFGIGMTYA  353 (467)
Q Consensus       316 -----~~~~p~------~~~~~~p--------------------------~Gk----~~i~~-~G~ditii~~G~~~~~a  353 (467)
                           ..+-|.      .+|+.+.                          +|+    .+.++ +.-|+.||+||+....+
T Consensus       203 ~~~~ld~~~P~~~G~~~~~d~~~~~~~~~~~~~~~~~~~i~~~~~e~~~~~gr~y~~~e~y~~eDAe~viV~~GS~~~~~  282 (407)
T PRK09622        203 KNSLLDFDKPVTYGAQTEEDWHFEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLVETYQMEDAEVAIFALGTTVESA  282 (407)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCHHHH
T ss_conf             66667875674447878997433322644176887899999999999998587556078717998779999807868999


Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCCCEEE----
Q ss_conf             8887531004675279733006857999999999871989999578876767899999999967764-28982997----
Q gi|254780673|r  354 TKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDY-LDAPILTI----  428 (467)
Q Consensus       354 ~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~-L~~p~~ri----  428 (467)
                      .+|.+.|.++|+.+.+|.+|+++||..+.|.+.+++.++++|+|-....|..| ++...+..-.++. ....|..+    
T Consensus       283 ~~AVd~lR~~G~KVGlir~r~~rPFP~~~l~~al~~~K~V~Vldr~~~~g~~g-~l~~~v~~al~~~~~~~~p~v~~~~~  361 (407)
T PRK09622        283 IVAAKEMRKKGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMG-ALFNEVTSAVYQTQGTKHPVVSNYIY  361 (407)
T ss_pred             HHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCCC-HHHHHHHHHHHHCCCCCCCEEECEEC
T ss_conf             99999999749867589999858999999999875799899997889988877-37999999998527778987956565


Q ss_pred             --CCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf             --177788888966765608998999999999850200
Q gi|254780673|r  429 --TGRDVPMPYAANLEKLALPNVDEIIESVESICYKRK  464 (467)
Q Consensus       429 --~~~d~p~P~~~~le~~~~p~~~~I~~av~~v~~~~~  464 (467)
                        +++|..           --+...|++..++.-.+.+
T Consensus       362 GLgg~d~t-----------~~~~~~v~~~l~~~~~~g~  388 (407)
T PRK09622        362 GLGGRDMT-----------IAHLCEIFEEINENALAGT  388 (407)
T ss_pred             CCCCCCCC-----------HHHHHHHHHHHHHHHHCCC
T ss_conf             78878899-----------9999999999999985599


No 55 
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.25  E-value=5.6e-10  Score=89.58  Aligned_cols=242  Identities=17%  Similarity=0.265  Sum_probs=145.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCCCCHHHHHHH
Q ss_conf             6627899899998871886445666667899999999987886742117767888799----830244576444433216
Q gi|254780673|r  194 ITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF----RGPNGAAARVAAQHSQCY  269 (467)
Q Consensus       194 i~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~----r~p~G~~~~~g~~Hs~~~  269 (467)
                      =+|.+.+++++|++++|.|-...-+--.| ++-.++|.       |..+  ..+|+|+    |++.. .+..-..|+   
T Consensus        60 EsE~aAi~a~iGAs~aGara~TaTSgpGl-~LM~E~l~-------~aag--~elP~Vi~~v~R~~~~-~~~i~~dh~---  125 (394)
T PRK08366         60 ESEHSAMAACIGASATGARAFTATSAQGL-ALMHEMLH-------WAAG--ARLPIVMVDVNRAMAP-PWSVWDDQT---  125 (394)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEECCCCCH-HHHHHHHH-------HHHH--CCCCEEEEEEECCCCC-CCCCCCCHH---
T ss_conf             77899999999998518776874077348-87745889-------9987--4498799996537899-888761045---


Q ss_pred             HHHHHHHCCCEEEEEECCHHCCCHHH----HHHHCCCCEEEECCCCCCCCC---------------------------CC
Q ss_conf             88763220313866522100010555----654137834764021233333---------------------------45
Q gi|254780673|r  270 AAWYSHVPGLKVVIPYTASDAKGLLK----AAIRDPNPVIFLENEILYGSS---------------------------FE  318 (467)
Q Consensus       270 ~~~~~~iPgl~V~~P~~~~d~~~ll~----~ai~~~~Pvi~le~~~ly~~~---------------------------~~  318 (467)
                      +.+...--|+-+++|++.+|+..+..    .|.+...||+.+.+..+-...                           .+
T Consensus       126 D~m~~rd~g~~~l~~~~~QE~~d~~i~Af~iAe~~~~Pviv~~Dgf~~sh~~~~v~~~~~e~v~~~lp~~~~~~~~~~~~  205 (394)
T PRK08366        126 DSLSQRDTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYTLADFE  205 (394)
T ss_pred             HHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCEECCCCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf             46435777717883698788999999999999998799899605335318531454797778775438766433346766


Q ss_pred             CCC-------CCCE---ECC----------------------CCCE--EEE----ECCCCCEEEEHHHHHHHHHHHHHHH
Q ss_conf             334-------6631---214----------------------4311--444----3168745860257888888887531
Q gi|254780673|r  319 VPM-------VDDL---VIP----------------------IGRA--RIH----RQGSDVTIISFGIGMTYATKAAIEL  360 (467)
Q Consensus       319 ~p~-------~~~~---~~p----------------------~Gk~--~i~----~~G~ditii~~G~~~~~a~~aa~~L  360 (467)
                      -|.       .++|   ...                      +|+-  ..+    .+.-|+.||+||++...+.+|.+.|
T Consensus       206 ~P~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~e~~~~~gr~y~~~~e~y~~edAd~viV~~GS~~~~~~eaVd~l  285 (394)
T PRK08366        206 NPIAVGALATPADYYEFRYKIAKAHEEAKKVIKEVGKEFGERFGRDYSQMIETYYIDDADFVFMGMGSLMGTVKEAVDLL  285 (394)
T ss_pred             CCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHEEECCCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf             87420787798652210100168899889999999999999964010110043378887799999375189999999999


Q ss_pred             HCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCE------EECCCCCC
Q ss_conf             004675279733006857999999999871989999578876767899999999967764289829------97177788
Q gi|254780673|r  361 EKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPIL------TITGRDVP  434 (467)
Q Consensus       361 ~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~------ri~~~d~p  434 (467)
                      .++|+.+.++.+|++.||+.+.|.+..++.++++|+|-....|..| -+...+..-.++ .+..|.      =|+++|..
T Consensus       286 r~~G~kVG~l~vr~~rPFP~~~l~~~l~~~k~V~Vlern~~~g~~g-~l~~~v~~al~~-~~~~~~~~~~~~Glgg~d~~  363 (394)
T PRK08366        286 RKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEG-ILFTEAKGALYN-TDARPIMKNYIVGLGGRDFT  363 (394)
T ss_pred             HHCCCEEEEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCCC-CHHHHHHHHHHC-CCCCCEEECEEECCCCCCCC
T ss_conf             9759866589998848999999999875799899965788988788-159999999856-89997582757427788899


Q ss_pred             CCCCHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             8889667656089989999999998502
Q gi|254780673|r  435 MPYAANLEKLALPNVDEIIESVESICYK  462 (467)
Q Consensus       435 ~P~~~~le~~~~p~~~~I~~av~~v~~~  462 (467)
                          +       -+...+++..++...+
T Consensus       364 ----~-------~~~~~~~~~l~~~~~~  380 (394)
T PRK08366        364 ----V-------SDVKAIAEDMKKVIES  380 (394)
T ss_pred             ----H-------HHHHHHHHHHHHHHHC
T ss_conf             ----9-------9999999999967664


No 56 
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.09  E-value=4.9e-10  Score=89.96  Aligned_cols=62  Identities=29%  Similarity=0.441  Sum_probs=58.7

Q ss_pred             EEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf             578987741789762589859999537533343177786898998237885132697589994
Q gi|254780673|r   16 EGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAIL   78 (467)
Q Consensus        16 eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~   78 (467)
                      -|+|.+|++++||.|++||+|+.||..|--.++.||.+|+|++|++++| |.|..|++|..|.
T Consensus        87 pG~v~~v~v~~Gd~V~~g~~l~vlEaMKMe~~i~a~~~G~v~~i~v~~g-~~V~~g~~l~~ig  148 (148)
T PRK05641         87 PGKILKILVKEGDQVKTGQGLLILEAMKMENEIPAPKDGVVKKILVKEG-DTVDTGQPLIELG  148 (148)
T ss_pred             CEEEEEEEECCCCEECCCCEEEEEEHHCCCEEEEECCCEEEEEEEECCC-CEECCCCEEEEEC
T ss_conf             9089999968999987999999999431513999299989989993897-9989999899959


No 57 
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.03  E-value=1.3e-09  Score=86.97  Aligned_cols=62  Identities=31%  Similarity=0.432  Sum_probs=59.0

Q ss_pred             EEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf             578987741789762589859999537533343177786898998237885132697589994
Q gi|254780673|r   16 EGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAIL   78 (467)
Q Consensus        16 eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~   78 (467)
                      -|++.+-+|++||.|++||.||.||-=|.-+||+||.+|+|.+|++++| +.|..|++|..|.
T Consensus        78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G-~~Ve~G~~L~~I~  139 (140)
T COG0511          78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNG-DPVEYGDPLAVIE  139 (140)
T ss_pred             CEEEEEEEECCCCEECCCCEEEEEEEEECCCEECCCCCCEEEEEEECCC-CCCCCCCEEEEEE
T ss_conf             6189998765799975899999998200155322899968999994489-8526899889960


No 58 
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.02  E-value=1.4e-09  Score=86.80  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=58.5

Q ss_pred             EEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf             78987741789762589859999537533343177786898998237885132697589994
Q gi|254780673|r   17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAIL   78 (467)
Q Consensus        17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~   78 (467)
                      |+|.+|++++||.|++||.|+.||..|--.+|.||.+|+|.+|++++| +.|..|++|..|.
T Consensus        72 G~v~~i~v~~Gd~V~~g~~l~vlEAMKMe~~i~ap~~G~V~~i~v~~G-~~V~~g~~L~~ig  132 (132)
T PRK06549         72 GTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTITAIHVGPG-QVVNPGDGLITIG  132 (132)
T ss_pred             EEEEEEEECCCCEECCCCEEEEEEEHHCCCEEECCCCEEEEEEEECCC-CEECCCCEEEEEC
T ss_conf             799999938999987999899998010244105899979989994798-9989999899949


No 59 
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.95  E-value=4.2e-09  Score=83.38  Aligned_cols=62  Identities=23%  Similarity=0.291  Sum_probs=58.9

Q ss_pred             EEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf             578987741789762589859999537533343177786898998237885132697589994
Q gi|254780673|r   16 EGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAIL   78 (467)
Q Consensus        16 eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~   78 (467)
                      .|++.+|++++||.|++||.|+.+|.-|--.+|.||.+|+|++|++++| |.|.-|++|+.|.
T Consensus         9 ~G~V~~v~V~~Gd~V~~G~~l~vlEAMKME~~i~A~~~G~V~~i~v~~G-d~V~~G~~L~~ie   70 (70)
T PRK08225          9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEG-DFVNEGDVLLEIE   70 (70)
T ss_pred             CEEEEEEEECCCCEECCCCEEEEEEECCCCCEEECCCCEEEEEEEECCC-CEECCCCEEEEEC
T ss_conf             9499999928989989999999997112657684799909999995898-9989999999979


No 60 
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=98.94  E-value=5.2e-09  Score=82.78  Aligned_cols=61  Identities=26%  Similarity=0.326  Sum_probs=58.6

Q ss_pred             EEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE
Q ss_conf             57898774178976258985999953753334317778689899823788513269758999
Q gi|254780673|r   16 EGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI   77 (467)
Q Consensus        16 eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i   77 (467)
                      .|++.++++++||.|++||+|+.+|.-|--++|.||.+|+|.+|++++| |.|..|++|++|
T Consensus        10 ~G~V~~v~V~~Gd~V~~Gd~l~vlEAMKME~~v~A~~~G~V~~i~v~~G-d~V~~Gd~L~~I   70 (71)
T PRK05889         10 VASVLEVVVNEGDQIGEGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVG-DVIQAGDLIAVI   70 (71)
T ss_pred             CEEEEEEEECCCCEECCCCEEEEEEHHCCCCEEECCCCCEEEEEEECCC-CEECCCCEEEEE
T ss_conf             8489999979999988999999998200457784799909979997899-998899999996


No 61 
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.85  E-value=1.1e-06  Score=66.33  Aligned_cols=249  Identities=20%  Similarity=0.247  Sum_probs=151.0

Q ss_pred             HCCCC--CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             40811--1011666627899899998871886445666667899999999987886742117767888799830244576
Q gi|254780673|r  183 EFGCE--RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR  260 (467)
Q Consensus       183 ~fg~~--R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~  260 (467)
                      +++++  =+|.-.+.|...+-+|+|+++.|.|-++ +|-.-=+-+|.|.++|.+.     +|-  +-.+|+-.  |  ..
T Consensus        40 ~~~~~~~i~~e~~~NEkvA~e~a~gA~~~Gvr~l~-~~K~vGlnva~D~l~~~~~-----~G~--~GG~v~v~--g--DD  107 (595)
T TIGR03336        40 KVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLRAFC-TMKHVGLNVAADPLMTLAY-----TGV--KGGLVVVV--A--DD  107 (595)
T ss_pred             HHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEE-ECCCCCCCHHHHHHHHHHH-----HCC--CCEEEEEE--E--CC
T ss_conf             62042666998557889999998776442863899-8566884412778887652-----077--75599999--4--69


Q ss_pred             CCHHHHHHHH--HHHHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECC-CCCCC----------CCCCCCCC-
Q ss_conf             4444332168--87632203138665221000105556541----3783476402-12333----------33453346-
Q gi|254780673|r  261 VAAQHSQCYA--AWYSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLEN-EILYG----------SSFEVPMV-  322 (467)
Q Consensus       261 ~g~~Hs~~~~--~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~-~~ly~----------~~~~~p~~-  322 (467)
                      -|+.-||.-+  -+|+..-+|-|+.|+|++|++.+.+.++.    +.-||+|--- +.-..          .....|.. 
T Consensus       108 pg~~SSq~eqdsr~~~~~a~iPvl~Ps~~qE~~d~~~~af~LSr~~g~pV~lr~ttrv~h~~~~V~~~~~~~~~~~~~~~  187 (595)
T TIGR03336       108 PSMHSSQNEQDTRHYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFE  187 (595)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCC
T ss_conf             99853516777899999849826778999999999999999999979987999887664345557658866677886556


Q ss_pred             ---------------------------CCEE--CCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             ---------------------------6312--14431144431687458602578888888875310046752797330
Q gi|254780673|r  323 ---------------------------DDLV--IPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLR  373 (467)
Q Consensus       323 ---------------------------~~~~--~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r  373 (467)
                                                 .+|.  .++.  ++...+.++-||+.|.....+.+|-+.|   |+++.++-+-
T Consensus       188 ~~~~~~~~~p~~~~~~~~~l~~rl~~~~~~~~~~~~n--~v~~~~~~iGIItsG~~y~~v~eAl~~l---G~~i~ilKlg  262 (595)
T TIGR03336       188 KDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLN--RLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIG  262 (595)
T ss_pred             CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEECCCCCEEEEECCCCHHHHHHHHHHC---CCCCCEEEEC
T ss_conf             7866528996668999999999999999999868996--6723999889992281089999999972---9996268843


Q ss_pred             CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHH
Q ss_conf             06857999999999871989999578876767899999999967764289829971777888889667656089989999
Q gi|254780673|r  374 TIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEII  453 (467)
Q Consensus       374 ~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~  453 (467)
                      ..+||+.+.|.+-++...+++||||...   |   |-..|.+-+|+ ....++.++-.|-.+|....|      +.+.|.
T Consensus       263 m~~PLp~~~i~~F~~g~d~VlVVEE~~p---~---iE~qik~~~~~-~~~~~~v~GK~d~~lp~~GEl------~~~~i~  329 (595)
T TIGR03336       263 FTYPVPEGLVEEFLSGVEEVLVVEELEP---V---VEEQVKALAGT-AGLNIKVHGKEDGFLPREGEL------NPDIVV  329 (595)
T ss_pred             CCCCCCHHHHHHHHHCCCEEEEEECCCH---H---HHHHHHHHHHH-CCCCCEEECCCCCCCCCCCCC------CHHHHH
T ss_conf             7678988999999845988999935836---5---89999999751-689954778887878865685------999999


Q ss_pred             HHHHHHHC
Q ss_conf             99999850
Q gi|254780673|r  454 ESVESICY  461 (467)
Q Consensus       454 ~av~~v~~  461 (467)
                      +++.+...
T Consensus       330 ~~l~~~~~  337 (595)
T TIGR03336       330 NALAKFGL  337 (595)
T ss_pred             HHHHHHHC
T ss_conf             99997534


No 62 
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.78  E-value=3.3e-08  Score=77.15  Aligned_cols=27  Identities=4%  Similarity=-0.082  Sum_probs=13.5

Q ss_pred             EEECCCCCEEEEHHHHHHHHHHHHHHH
Q ss_conf             443168745860257888888887531
Q gi|254780673|r  334 IHRQGSDVTIISFGIGMTYATKAAIEL  360 (467)
Q Consensus       334 i~~~G~ditii~~G~~~~~a~~aa~~L  360 (467)
                      +.+..-++..|+-++.+...+.....|
T Consensus       328 V~~~lG~~~~VTP~SqiVg~qA~~NVl  354 (580)
T PRK09282        328 VREDLGYPPLVTPTSQIVGTQAVLNVL  354 (580)
T ss_pred             HHHHCCCCCEECCHHHHHHHHHHHHHH
T ss_conf             999759986128499999999999986


No 63 
>PRK07051 hypothetical protein; Validated
Probab=98.78  E-value=2.2e-08  Score=78.31  Aligned_cols=58  Identities=26%  Similarity=0.284  Sum_probs=54.1

Q ss_pred             EEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf             77417897625898599995375333431777868989982378851326975899943
Q gi|254780673|r   21 KWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ   79 (467)
Q Consensus        21 ~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~   79 (467)
                      .=+|++||.|++||.||.||.-|.-.||.|+.+|+|.+|++++|+ .|.-|++|..|.+
T Consensus        23 ~pfV~~Gd~V~~G~~v~iiEaMKm~~~V~A~~~G~V~~ilv~~G~-~V~~Gq~L~~Iee   80 (80)
T PRK07051         23 PPYVEVGDTVAAGDVVGLVEVMKQFSEVEAEVAGRVVRFLVDDGE-PVDAGQVLMRIEE   80 (80)
T ss_pred             CCCCCCCCEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCC-EECCCCEEEEEEC
T ss_conf             981367999889999999970027746726998299999956989-8679997899829


No 64 
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.77  E-value=3.9e-08  Score=76.63  Aligned_cols=81  Identities=17%  Similarity=0.265  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCE-EEEECCC-CCCCCHHHHHHHHHHCCCE-EEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78888888875310046752-7973300-6857999999999871989-9995788767678999999999677642898
Q gi|254780673|r  348 IGMTYATKAAIELEKNGIDA-ELIDLRT-IRPMDWQTIFESVKKTGRL-VTVEEGYPQSSVGSTIANQVQRKVFDYLDAP  424 (467)
Q Consensus       348 ~~~~~a~~aa~~L~~~gi~~-~vid~r~-l~Pld~~~i~~sv~kt~~~-i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p  424 (467)
                      +.+..-++.|+.|.+.|.+. .|=||-- |+|.....+.+.+++.=.| |-+|-| -+.|.+..-.-...|-+-+..|.-
T Consensus       689 ~~l~yy~~~a~~l~~~G~~~l~IKDMAGLl~P~aa~~LV~aLk~~~~lPIhlHtH-dTsG~~~at~laA~eAGvDiVD~A  767 (1147)
T PRK12999        689 YDLDYYVDLAKELEAAGAHILAIKDMAGLLKPAAAYKLVSALKEEVDLPIHLHTH-DTSGNGLATYLAAAEAGVDIVDVA  767 (1147)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC-CCCCHHHHHHHHHHHCCCCEEECC
T ss_conf             6699999999999976898899714454688799999999998616984598436-788558999999998599989635


Q ss_pred             CEEEC
Q ss_conf             29971
Q gi|254780673|r  425 ILTIT  429 (467)
Q Consensus       425 ~~ri~  429 (467)
                      +--++
T Consensus       768 ~ssmS  772 (1147)
T PRK12999        768 MASMS  772 (1147)
T ss_pred             CHHHC
T ss_conf             41102


No 65 
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.75  E-value=2.2e-07  Score=71.32  Aligned_cols=278  Identities=21%  Similarity=0.269  Sum_probs=174.7

Q ss_pred             HHHHHHHHHHC------CCCCEEEEECCCCCCCCCCCCC----------------CCHHHHCCCCCEECCCCCHHHHHHH
Q ss_conf             12235544311------3650699932434458866532----------------3647540811101166662789989
Q gi|254780673|r  145 ALRDAIAEEMR------RDKDVFIMGEEVAEYQGAYKVT----------------QGLLQEFGCERVIDTPITEHGFAGI  202 (467)
Q Consensus       145 a~~~a~~e~m~------~d~~~~~~gedv~~~~g~f~~t----------------~gl~~~fg~~R~~d~pi~E~~~~G~  202 (467)
                      .+.++|+|.|.      ....+-+=|||++.  |.|...                ..|...=|.-.++|.+++|.++.|+
T Consensus       565 ~iDW~~aE~LAfatll~eG~~iRlsGqDs~R--GTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgF  642 (906)
T COG0567         565 GIDWGMAETLAFATLLDEGHPIRLSGQDSGR--GTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGF  642 (906)
T ss_pred             CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEECCCCCCCCCCHHHCCCCCCEEEEEECHHHHHHHHHH
T ss_conf             3316678886155000368874420031798--67534424542356742217023313566449998145568888756


Q ss_pred             HHHHHHCCCCCHH--HHHHHHHHHH---HHHHHHHH-HHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHH-HHHHHHHH
Q ss_conf             9998871886445--6666678999---99999987-8867421177678887998302445764444332-16887632
Q gi|254780673|r  203 GIGASFAGLKPIV--EFMTFNFAMQ---AIDQIINS-AAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQ-CYAAWYSH  275 (467)
Q Consensus       203 a~G~A~~G~~Piv--~~~~~~f~~~---a~dqi~n~-~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~-~~~~~~~~  275 (467)
                      =-|.++.-.+-.+  |.||+||+-.   -+||-++. -.||.-+||      +|.-.|.| +-|+||.||- -++-++.-
T Consensus       643 EYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sg------Lv~lLPHg-yEGQGPEHSSaRlER~LQL  715 (906)
T COG0567         643 EYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSG------LVMLLPHG-YEGQGPEHSSARLERFLQL  715 (906)
T ss_pred             HHHHHHCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCC------CEEECCCC-CCCCCCCCCCCHHHHHHHH
T ss_conf             5314323873221001320561368761213656659899988657------22772276-7899976764346889986


Q ss_pred             --HCCCEEEEEECCHHCCCHHHH-HHH-CCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEE----ECCCCCE-EEEH
Q ss_conf             --203138665221000105556-541-378347640212333334533466312144311444----3168745-8602
Q gi|254780673|r  276 --VPGLKVVIPYTASDAKGLLKA-AIR-DPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIH----RQGSDVT-IISF  346 (467)
Q Consensus       276 --iPgl~V~~P~~~~d~~~ll~~-ai~-~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~----~~G~dit-ii~~  346 (467)
                        =-||+|++|+++.....+|+. +.+ ...|.+++-+|.|-+....+-..+++.-. +.-.++    ....+++ |+.+
T Consensus       716 caE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~-~F~~vl~d~~~~~~~v~rvvlc  794 (906)
T COG0567         716 CAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEG-TFQPVLEDIDELDPKVKRVVLC  794 (906)
T ss_pred             HHHHCCEEEECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHCCCCCCCHHHHCCC-HHHCCHHCCCCCCCCEEEEEEE
T ss_conf             187588788338289999999998764156751855765565462668845552301-2210020111145441357630


Q ss_pred             HHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHHHHHHHC---CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             578888888875310046-75279733006857999999999871---98999957887676789999999996776428
Q gi|254780673|r  347 GIGMTYATKAAIELEKNG-IDAELIDLRTIRPMDWQTIFESVKKT---GRLVTVEEGYPQSSVGSTIANQVQRKVFDYLD  422 (467)
Q Consensus       347 G~~~~~a~~aa~~L~~~g-i~~~vid~r~l~Pld~~~i~~sv~kt---~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~  422 (467)
                      +..++..+.+..  .+.| .++-++-+..|.||..+.+.+.+++.   +.++-+.|...+-|-=..+...+.+- +... 
T Consensus       795 SGKvyydl~~~r--~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~~~~~~l~~~-l~~~-  870 (906)
T COG0567         795 SGKVYYDLLEQR--EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWYYIQPHLEEV-LPEG-  870 (906)
T ss_pred             CCCHHHHHHHHH--HHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCC-
T ss_conf             440679999778--646876526875201167668999999974343023556665777665277788899986-2123-


Q ss_pred             CCCEEECCCCCCCC
Q ss_conf             98299717778888
Q gi|254780673|r  423 APILTITGRDVPMP  436 (467)
Q Consensus       423 ~p~~ri~~~d~p~P  436 (467)
                      ...+.++.+-..-|
T Consensus       871 ~~l~yagRp~saSp  884 (906)
T COG0567         871 DKLRYAGRPASASP  884 (906)
T ss_pred             CHHCCCCCCCCCCC
T ss_conf             20001478766676


No 66 
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.72  E-value=1.7e-06  Score=65.12  Aligned_cols=254  Identities=24%  Similarity=0.289  Sum_probs=158.2

Q ss_pred             HHHCCC---CCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             754081---11011666627899899998871886445666667899999999987886742117767888799830244
Q gi|254780673|r  181 LQEFGC---ERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGA  257 (467)
Q Consensus       181 ~~~fg~---~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~  257 (467)
                      +-++.+   +-+|.-..+|.-..-+|.|++..|.|-.+. |---=+-+|.|.+.|.+    |  .| ..-.+++..    
T Consensus        49 la~~~~~l~~vy~e~s~NEkvA~e~a~GA~~~G~ral~~-mKhVGlNvAsDpl~s~a----y--~G-v~GGlviv~----  116 (640)
T COG4231          49 LAKAKKILGDVYFEWSLNEKVALETAAGASYAGVRALVT-MKHVGLNVASDPLMSLA----Y--AG-VTGGLVIVV----  116 (640)
T ss_pred             HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCHHHHHHHH----H--CC-CCCCEEEEE----
T ss_conf             998654307389970654899999998765337002687-12356452202555543----0--37-666089998----


Q ss_pred             CCCCCHHHHHHH--HHHHHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECC-CCCCCC-----C---CC--CC
Q ss_conf             576444433216--887632203138665221000105556541----3783476402-123333-----3---45--33
Q gi|254780673|r  258 AARVAAQHSQCY--AAWYSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLEN-EILYGS-----S---FE--VP  320 (467)
Q Consensus       258 ~~~~g~~Hs~~~--~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~-~~ly~~-----~---~~--~p  320 (467)
                      +...|.+-||+-  --||...-.+-|+.|+|+++++.+.+.++.    +..||++--- +.-..+     +   .+  .|
T Consensus       117 aDDpg~~SSqneqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~  196 (640)
T COG4231         117 ADDPGMHSSQNEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEP  196 (640)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCCCCCCCC
T ss_conf             16988644535667689888507612068986999999999987778738978999986430221028824666787765


Q ss_pred             CCCCEECCCCC-------------------------------EEEEECC--CCCEEEEHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             46631214431-------------------------------1444316--87458602578888888875310046752
Q gi|254780673|r  321 MVDDLVIPIGR-------------------------------ARIHRQG--SDVTIISFGIGMTYATKAAIELEKNGIDA  367 (467)
Q Consensus       321 ~~~~~~~p~Gk-------------------------------~~i~~~G--~ditii~~G~~~~~a~~aa~~L~~~gi~~  367 (467)
                      ....|.-++++                               .+.+..+  .++-||+-|.......+|-+   +.|++.
T Consensus       197 ~~~~~~k~~~~~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~---~lgl~~  273 (640)
T COG4231         197 EDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALE---DLGLDD  273 (640)
T ss_pred             CCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHH---HCCCCC
T ss_conf             21243478663230674211256788999999999998648656313688785689935721799999999---758874


Q ss_pred             EEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC-CCCCHHHHHHCC
Q ss_conf             7973300685799999999987198999957887676789999999996776428982997177788-888966765608
Q gi|254780673|r  368 ELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVP-MPYAANLEKLAL  446 (467)
Q Consensus       368 ~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p-~P~~~~le~~~~  446 (467)
                      .++-+-+..||+...|.+.++.-.+++||||.-.   |=.   .++.+-.++  ..-+..++.+|.- .|-      .+=
T Consensus       274 ~~lklg~~~Plp~~~i~~F~~g~~~vlVVEE~~P---~iE---~qv~~~l~~--~~~~~~v~GKd~gllP~------~GE  339 (640)
T COG4231         274 ELLKLGTPYPLPEQLIENFLKGLERVLVVEEGEP---FIE---EQVKALLYD--AGLPVEVHGKDEGLLPM------EGE  339 (640)
T ss_pred             EEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCH---HHH---HHHHHHHHH--CCCCEEEECCCCCCCCC------CCC
T ss_conf             1789458757888999999826847999955870---489---999999875--48854740344564576------566


Q ss_pred             CCHHHHHHHHHHHHCCC
Q ss_conf             99899999999985020
Q gi|254780673|r  447 PNVDEIIESVESICYKR  463 (467)
Q Consensus       447 p~~~~I~~av~~v~~~~  463 (467)
                      .+.+.|..++.+.+.+.
T Consensus       340 lt~~~i~~ai~~~l~~~  356 (640)
T COG4231         340 LTPEKIANAIAKFLGKE  356 (640)
T ss_pred             CCHHHHHHHHHHHHCCC
T ss_conf             38999999999984766


No 67 
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.67  E-value=6.1e-08  Score=75.25  Aligned_cols=55  Identities=29%  Similarity=0.458  Sum_probs=51.9

Q ss_pred             EECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE
Q ss_conf             74178976258985999953753334317778689899823788513269758999
Q gi|254780673|r   22 WKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI   77 (467)
Q Consensus        22 W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i   77 (467)
                      =+|++||.|++||+||-||-=|.-.||+|+.+|+|.+||+++| +.|.-|++|..+
T Consensus       100 pFV~vGd~V~~Gq~v~iIEaMK~mneI~a~~~G~I~~Ilv~~G-~~Veygq~Lf~i  154 (155)
T PRK06302        100 PFVEVGDTVKEGQTLCIIEAMKMMNEIEADKSGVVKEILVENG-QPVEFGQPLFVI  154 (155)
T ss_pred             CCCCCCCEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCC-CEECCCCEEEEE
T ss_conf             7424686724898899998424353240698848999985599-876399826986


No 68 
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=98.65  E-value=2.8e-06  Score=63.65  Aligned_cols=231  Identities=20%  Similarity=0.265  Sum_probs=129.1

Q ss_pred             CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCCCCCCHHH
Q ss_conf             10116666278998999988718864456666678999999999878867421177678887998302--4457644443
Q gi|254780673|r  188 RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPN--GAAARVAAQH  265 (467)
Q Consensus       188 R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~--G~~~~~g~~H  265 (467)
                      -++--.=+|.+.+++++|++++|-|-...-+--.|+ +..+.+        ++.+| ..+|+|+--..  |...++ |++
T Consensus        48 ~~~vq~EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~-Lm~E~l--------~~a~~-~~~P~Vi~~~~R~~ps~g~-p~~  116 (365)
T COG0674          48 GVFVQMESEIGAISAVIGASYAGARAFTATSGQGLL-LMAEAL--------GLAAG-TETPLVIVVAQRPLPSTGL-PIK  116 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCHHH-HHHHHH--------HHHHH-CCCCEEEEECCCCCCCCCC-CCC
T ss_conf             679932548899999970463176016742775288-888888--------88875-5177799973567677655-566


Q ss_pred             -HHHHHHHHHHHCCCEEEEEECCHHCCCHH----HHHHHCCCCEEEECCCCCCCC---C-----CC-----CCC------
Q ss_conf             -32168876322031386652210001055----565413783476402123333---3-----45-----334------
Q gi|254780673|r  266 -SQCYAAWYSHVPGLKVVIPYTASDAKGLL----KAAIRDPNPVIFLENEILYGS---S-----FE-----VPM------  321 (467)
Q Consensus       266 -s~~~~~~~~~iPgl~V~~P~~~~d~~~ll----~~ai~~~~Pvi~le~~~ly~~---~-----~~-----~p~------  321 (467)
                       .|+ +.++.--.|.-.++-+|.+|+..+-    +.|.+...||+.+.+..+-..   .     .+     ++.      
T Consensus       117 ~dq~-D~~~~r~~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~  195 (365)
T COG0674         117 GDQS-DLMAARDTGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTA  195 (365)
T ss_pred             CCHH-HHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             3337-899988147256566043778999999999987327877998502132175212343653234454212477544


Q ss_pred             -------------CCC-EE---------CC---------C-------CC----EEEEE-CCCCCEEEEHHHHHHHHHHHH
Q ss_conf             -------------663-12---------14---------4-------31----14443-168745860257888888887
Q gi|254780673|r  322 -------------VDD-LV---------IP---------I-------GR----ARIHR-QGSDVTIISFGIGMTYATKAA  357 (467)
Q Consensus       322 -------------~~~-~~---------~p---------~-------Gk----~~i~~-~G~ditii~~G~~~~~a~~aa  357 (467)
                                   ..+ +.         .+         .       |.    ..+.. +.-++.||+||.....+.+++
T Consensus       196 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~  275 (365)
T COG0674         196 LDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAV  275 (365)
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEEECCCHHHHHHHH
T ss_conf             68888866776688825898886224332001588999999999984788765202237972789999675248689999


Q ss_pred             HHHH-CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf             5310-046752797330068579999999998719899995788767678999999999677642898299717778
Q gi|254780673|r  358 IELE-KNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV  433 (467)
Q Consensus       358 ~~L~-~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~  433 (467)
                      ..+. ++|+.+.++.+|++.||+.+.|.+.+++++++.|++-....|+ .+++........+.  ...+.++++.+.
T Consensus       276 ~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~-~~~~l~~~~~~~~~--~~~~~~~~g~~~  349 (365)
T COG0674         276 VDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGG-LAEPLYLEVLAALY--VESRYKLGGRDF  349 (365)
T ss_pred             HHHHHHCCCEEEEEEEEEECCCCHHHHHHHHCCCCEEEEEEEECCCCC-CHHHHHHHHHHHEE--ECCCCCCCCEEC
T ss_conf             998874185468999977568998999976134622699998236752-10028886431201--022022188636


No 69 
>KOG0451 consensus
Probab=98.62  E-value=3.1e-07  Score=70.32  Aligned_cols=293  Identities=19%  Similarity=0.236  Sum_probs=181.8

Q ss_pred             HHHHHHHHH------HCCCCCEEEEECCCCCCCCCCCCCCCH------HH-----------HCCCCCEECCCCCHHHHHH
Q ss_conf             122355443------113650699932434458866532364------75-----------4081110116666278998
Q gi|254780673|r  145 ALRDAIAEE------MRRDKDVFIMGEEVAEYQGAYKVTQGL------LQ-----------EFGCERVIDTPITEHGFAG  201 (467)
Q Consensus       145 a~~~a~~e~------m~~d~~~~~~gedv~~~~g~f~~t~gl------~~-----------~fg~~R~~d~pi~E~~~~G  201 (467)
                      -|.+|-+|.      |..--+|-+-||||+.  |.|-.-.-+      -+           .-|.--+-|.++||.++.|
T Consensus       563 kiDWaTAEAlA~GSll~qG~nVRiSGqDVGR--GTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLG  640 (913)
T KOG0451         563 KIDWATAEALAIGSLLYQGHNVRISGQDVGR--GTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLG  640 (913)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf             6454778889888888536733660340476--41121211243125661353621037776871674266221766630


Q ss_pred             HHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHH------HHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             99998871886--445666667899999999987------8867421177678887998302445764444332168876
Q gi|254780673|r  202 IGIGASFAGLK--PIVEFMTFNFAMQAIDQIINS------AAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWY  273 (467)
Q Consensus       202 ~a~G~A~~G~~--Piv~~~~~~f~~~a~dqi~n~------~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~  273 (467)
                      +--||++..-+  ||-|-||.||.--|  |||-+      -+||.-      ...+|+-.|.| ..|.||.||-|-+--|
T Consensus       641 FEyGmsienP~~L~iWEAQFGDFfNGA--QIIiDTFi~sgE~KWl~------ssglvmLLPHG-yDGAgpeHSSCRiERF  711 (913)
T KOG0451         641 FEYGMSIENPNNLIIWEAQFGDFFNGA--QIIIDTFIVSGETKWLE------SSGLVMLLPHG-YDGAGPEHSSCRIERF  711 (913)
T ss_pred             HHCCCCCCCCCCCEEEHHHHCCCCCCC--EEEEEEEECCCCHHHHH------HCCEEEECCCC-CCCCCCCCCHHHHHHH
T ss_conf             110323578653245323330313675--47876401055124454------18748982577-6888976431569999


Q ss_pred             HH------------HCCCEEEEEECCHHCCCHHHHH-H-HCCCCEEEECCCCCCCCCCCCCCCCC------EECCCCCEE
Q ss_conf             32------------2031386652210001055565-4-13783476402123333345334663------121443114
Q gi|254780673|r  274 SH------------VPGLKVVIPYTASDAKGLLKAA-I-RDPNPVIFLENEILYGSSFEVPMVDD------LVIPIGRAR  333 (467)
Q Consensus       274 ~~------------iPgl~V~~P~~~~d~~~ll~~a-i-~~~~Pvi~le~~~ly~~~~~~p~~~~------~~~p~Gk~~  333 (467)
                      .+            --||.|+.|.+++.+..+|+.- + +...|.|+.-+|+|.+.--.+-..++      |.--||.. 
T Consensus       712 LQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~-  790 (913)
T KOG0451         712 LQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDT-  790 (913)
T ss_pred             HHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCHHHHHHHCCCCCCCCCCCCCC-
T ss_conf             9873233336777604579707997899999999998774258648855088761700120476428985115433443-


Q ss_pred             EEECCC-CCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCE---EEEECCCCCCCHHHHH
Q ss_conf             443168-745860257888888887531004675279733006857999999999871989---9995788767678999
Q gi|254780673|r  334 IHRQGS-DVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRL---VTVEEGYPQSSVGSTI  409 (467)
Q Consensus       334 i~~~G~-ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~---i~vee~~~~gg~g~~i  409 (467)
                      +...-+ .-.|++.|.-.+...++.+.+.... .+.|+-+-.|-||....+..-.+|++.+   |--.|..++-|-=|-+
T Consensus       791 ~~~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWsFV  869 (913)
T KOG0451         791 IAKPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWSFV  869 (913)
T ss_pred             CCCHHHHEEEEEECCCCHHHHHHHHHHCCCCC-CEEEEEHHHCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEE
T ss_conf             36946701799965831434888787605555-21467525408974699999998668713211034356667861111


Q ss_pred             HHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHH
Q ss_conf             9999996776428982997177788888966765608998999999
Q gi|254780673|r  410 ANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIES  455 (467)
Q Consensus       410 ~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~a  455 (467)
                      .-+ .|+   .|-....-++.+..|.|.-...+ ...-..++|+++
T Consensus       870 rPR-FEn---~lg~~L~~~GRpelp~pAtgIG~-vH~~e~eeiva~  910 (913)
T KOG0451         870 RPR-FEN---LLGQQLHYCGRPELPTPATGIGK-VHKREVEEIVAA  910 (913)
T ss_pred             CHH-HHH---HHHHHHEECCCCCCCCCCCCCHH-HHHHHHHHHHHH
T ss_conf             667-787---76445100578999976422103-546669998742


No 70 
>KOG0450 consensus
Probab=98.58  E-value=2.4e-06  Score=64.05  Aligned_cols=282  Identities=21%  Similarity=0.253  Sum_probs=180.0

Q ss_pred             HHHHHHHHHHH------CCCCCEEEEECCCCCCCCCCCCCC-----------------CHHHHCCCCCEECCCCCHHHHH
Q ss_conf             01223554431------136506999324344588665323-----------------6475408111011666627899
Q gi|254780673|r  144 EALRDAIAEEM------RRDKDVFIMGEEVAEYQGAYKVTQ-----------------GLLQEFGCERVIDTPITEHGFA  200 (467)
Q Consensus       144 ea~~~a~~e~m------~~d~~~~~~gedv~~~~g~f~~t~-----------------gl~~~fg~~R~~d~pi~E~~~~  200 (467)
                      +.+.+|++|.|      +.--.|=+-||||.  .|.|-.-.                 -|...=++--|-|.-+||-+..
T Consensus       647 ~~iDwal~EalAFgsLl~EG~hVRlSGQDVE--RGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVL  724 (1017)
T KOG0450         647 EGVDWALAEALAFGSLLKEGIHVRLSGQDVE--RGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVL  724 (1017)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEECCCCC--CCCCCCCHHHHCCCCCCCCEECCHHHCCCCCCCEEEECCCHHHHHEE
T ss_conf             3663678889988888760726874044225--54334200220421257525451653587778545644633453200


Q ss_pred             HHHHHHHHCCCCCHH--HHHHHHHH--HH-HHHHHHHH-HHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH-HHHHHHH
Q ss_conf             899998871886445--66666789--99-99999987-886742117767888799830244576444433-2168876
Q gi|254780673|r  201 GIGIGASFAGLKPIV--EFMTFNFA--MQ-AIDQIINS-AAKTRYMSGGQITTSIVFRGPNGAAARVAAQHS-QCYAAWY  273 (467)
Q Consensus       201 G~a~G~A~~G~~Piv--~~~~~~f~--~~-a~dqi~n~-~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~~~~~  273 (467)
                      |+-.|++|.--.-.|  |-||.||.  .| -+||.|.. -+||.-.+|      +|+-.|.|. -|.||.|| ..++-++
T Consensus       725 GFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFIssGqaKW~rqsG------lVllLPHGy-eG~GPEHSSaR~ERfL  797 (1017)
T KOG0450         725 GFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFISSGQAKWVRQSG------LVLLLPHGY-EGMGPEHSSARPERFL  797 (1017)
T ss_pred             CCEECCCCCCCCCEEEEEHHHCCCCCCCHHHHHHHHCCCHHHHHHHCC------EEEECCCCC-CCCCCCCCCCCHHHHH
T ss_conf             001011126997168861332564463056487675342355665267------699746776-7889654431489998


Q ss_pred             H--------------------HHCCCEEEEEECCHHCCCHHHHHHH--CCCCEEEECCCCCCCCCCCCCCCCCEE-----
Q ss_conf             3--------------------2203138665221000105556541--378347640212333334533466312-----
Q gi|254780673|r  274 S--------------------HVPGLKVVIPYTASDAKGLLKAAIR--DPNPVIFLENEILYGSSFEVPMVDDLV-----  326 (467)
Q Consensus       274 ~--------------------~iPgl~V~~P~~~~d~~~ll~~ai~--~~~Pvi~le~~~ly~~~~~~p~~~~~~-----  326 (467)
                      -                    +-=|+.|+.+++|..+..+|+.-|.  ...|.|++-+|.|.+.....-..++|.     
T Consensus       798 Qm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~f  877 (1017)
T KOG0450         798 QMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGF  877 (1017)
T ss_pred             HHCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCHHHHCCCCCC
T ss_conf             74168974377605788877751775999428807999999998631125765885607762281003887773567787


Q ss_pred             ---CC-CCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCC--CEEEEECCC
Q ss_conf             ---14-431144431687458602578888888875310046752797330068579999999998719--899995788
Q gi|254780673|r  327 ---IP-IGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTG--RLVTVEEGY  400 (467)
Q Consensus       327 ---~p-~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~--~~i~vee~~  400 (467)
                         +| -||+-+-.++-.-.|++.|--.+.-.++.+....+ -++-+.-+--|.||.++.|.+.++|+.  -++-+.|..
T Consensus       878 q~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~-~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~  956 (1017)
T KOG0450         878 QRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGLE-GDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEH  956 (1017)
T ss_pred             CEECCCCCCCCCCHHHCEEEEEECCEEEHHHHHHHHHCCCC-CCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf             40241326555882235179996666753566888752755-63358872011898579999999758982034201111


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
Q ss_conf             767678999999999677642898299717778888
Q gi|254780673|r  401 PQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMP  436 (467)
Q Consensus       401 ~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P  436 (467)
                      ++-|.=+.|.-++..-. ..|..|++-++....-.|
T Consensus       957 ~NmG~w~Yv~PRl~T~l-~~~~r~v~Y~GR~Psaa~  991 (1017)
T KOG0450         957 KNMGAWDYVEPRLRTAL-KRLARPVKYAGRLPSAAP  991 (1017)
T ss_pred             CCCCCHHHCCHHHHHHH-HHHCCCCEECCCCCCCCC
T ss_conf             03674322046999998-760786345366886665


No 71 
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776    This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=98.51  E-value=1.3e-07  Score=72.98  Aligned_cols=57  Identities=32%  Similarity=0.528  Sum_probs=49.8

Q ss_pred             EEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEE
Q ss_conf             7898774178976258985999953753334317778689899823788513269758
Q gi|254780673|r   17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPI   74 (467)
Q Consensus        17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~i   74 (467)
                      |.|.+.+|++||.|++||+|..||.=|==.||-|+.+|+|.+|+|+.| |.|.+|++|
T Consensus       560 G~i~~~~V~~G~~V~~G~vlL~~EAMKME~Ei~A~~aG~V~~i~v~~G-d~V~~gqVL  616 (616)
T TIGR01108       560 GSIVKITVSEGDEVKEGEVLLVVEAMKMETEIKAAAAGIVEEILVKKG-DKVSPGQVL  616 (616)
T ss_pred             CCEEEEEECCCCEECCCCEEEEEECCCCCHHHCCCCCCCEEEEEECCC-CEECCCCCC
T ss_conf             736999835787431577588531001112200543570112344578-750886679


No 72 
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.46  E-value=8.9e-06  Score=60.09  Aligned_cols=225  Identities=19%  Similarity=0.251  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHCCCCC-EEEEECCCC---CCCCCCCCCCCHH--HH-----C-C-CCCEECCCCCHHHHHHHHHHHHHCC
Q ss_conf             0122355443113650-699932434---4588665323647--54-----0-8-1110116666278998999988718
Q gi|254780673|r  144 EALRDAIAEEMRRDKD-VFIMGEEVA---EYQGAYKVTQGLL--QE-----F-G-CERVIDTPITEHGFAGIGIGASFAG  210 (467)
Q Consensus       144 ea~~~a~~e~m~~d~~-~~~~gedv~---~~~g~f~~t~gl~--~~-----f-g-~~R~~d~pi~E~~~~G~a~G~A~~G  210 (467)
                      .++.+=+.+.|+.|++ .-++|-|=.   ..+++|++|+-..  +.     | . ..||++ ++||++..|...|+++.|
T Consensus       405 ~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtG  483 (793)
T COG3957         405 TALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTG  483 (793)
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEH-HHCHHHHHHHHHHHHHCC
T ss_conf             8899999999860864257647871022101789987653012445684300288863412-204888878999998517


Q ss_pred             CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCCCCEEEEEECCCCCC---CCHHHHHH--HHHHHHH-HC
Q ss_conf             86445-666667899999999987886742117------767888799830244576---44443321--6887632-20
Q gi|254780673|r  211 LKPIV-EFMTFNFAMQAIDQIINSAAKTRYMSG------GQITTSIVFRGPNGAAAR---VAAQHSQC--YAAWYSH-VP  277 (467)
Q Consensus       211 ~~Piv-~~~~~~f~~~a~dqi~n~~ak~~~~~g------g~~~~p~v~r~p~G~~~~---~g~~Hs~~--~~~~~~~-iP  277 (467)
                      .+-+. .|-.|   ..-.|-.+|+-+||.-+.-      .--+++.++.   -..|+   .|-+| |+  ++.++++ .+
T Consensus       484 r~glf~sYEaF---~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~T---S~vw~QdhNGfsH-QdPgf~~~~~~k~~  556 (793)
T COG3957         484 RHGLFASYEAF---AHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLT---SHVWRQDHNGFSH-QDPGFIDHVANKKS  556 (793)
T ss_pred             CCCCEEEHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE---HHHHHCCCCCCCC-CCCHHHHHHHHHCC
T ss_conf             76614108999---99999987530999999985056788874102000---1556546678765-79539999976165


Q ss_pred             -CCEEEEEECCHHCCCHHHHHHHCCCCEEEECC----CCCCCCCCC-CCCCCCEECCCCCEEEEE--CCC-CCEEEEHHH
Q ss_conf             -31386652210001055565413783476402----123333345-334663121443114443--168-745860257
Q gi|254780673|r  278 -GLKVVIPYTASDAKGLLKAAIRDPNPVIFLEN----EILYGSSFE-VPMVDDLVIPIGRARIHR--QGS-DVTIISFGI  348 (467)
Q Consensus       278 -gl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~----~~ly~~~~~-~p~~~~~~~p~Gk~~i~~--~G~-ditii~~G~  348 (467)
                       .++|.-|.|++.+-.++..|+++.+-+..+-.    +..|-.-.+ +....+   -++-.+-..  +|+ |+-+.+.|.
T Consensus       557 d~vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~---G~~iwewas~d~gepdvV~A~~Gd  633 (793)
T COG3957         557 DIVRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTD---GAGIWEWASGDDGEPDVVMACAGD  633 (793)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEECHHHHHHHHHC---CCEEEEECCCCCCCCCEEEEECCC
T ss_conf             75268658987610445667762567337997369976300019999987634---817887524799998779993587


Q ss_pred             -HHHHHHHHHHHHHCCC--CCEE---EEECCCCCCCC
Q ss_conf             -8888888875310046--7527---97330068579
Q gi|254780673|r  349 -GMTYATKAAIELEKNG--IDAE---LIDLRTIRPMD  379 (467)
Q Consensus       349 -~~~~a~~aa~~L~~~g--i~~~---vid~r~l~Pld  379 (467)
                       .+.++++|+..|++++  +.+.   |||++.|.|.-
T Consensus       634 ~~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~  670 (793)
T COG3957         634 VPTIEVLAAAQILREEGPELRVRVVNVVDLMRLQPPH  670 (793)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHCCCCC
T ss_conf             3159999999999975864328999975202036876


No 73 
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084   Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=98.44  E-value=9.2e-07  Score=66.98  Aligned_cols=61  Identities=28%  Similarity=0.381  Sum_probs=57.8

Q ss_pred             EEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEE
Q ss_conf             57898774178976258985999953753334317778689899823788513269758999
Q gi|254780673|r   16 EGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAI   77 (467)
Q Consensus        16 eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i   77 (467)
                      .|++=|.+|++||.|++||.|+-||.=|.=|.|.||.+|+|++|++++|+ .|.-|+.+++|
T Consensus      1165 ~G~~WK~~V~~G~~V~~G~~l~i~EaMKmE~~v~Ap~~G~V~~i~~~~G~-~V~aG~~l~~~ 1225 (1226)
T TIGR02712      1165 AGNVWKVLVEVGDRVEAGQPLVIIEAMKMEMTVSAPVAGKVTKILCKPGD-MVDAGDILVVL 1225 (1226)
T ss_pred             EEEEEEEEECCCCEEECCCEEEEEEECCCCEEECCCCCCEEEEEEECCCC-CCCCCCEEEEE
T ss_conf             01465665212663204873899943572112438988548899736848-22678637874


No 74 
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.28  E-value=3.6e-06  Score=62.80  Aligned_cols=41  Identities=20%  Similarity=0.241  Sum_probs=21.0

Q ss_pred             EECCCCCE---------EEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             43168745---------860257888888887531004675279733006857
Q gi|254780673|r  335 HRQGSDVT---------IISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPM  378 (467)
Q Consensus       335 ~~~G~dit---------ii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pl  378 (467)
                      +++|+.|+         +|+||..-.+|++....--.+   ++|--+.+.-||
T Consensus       372 V~~G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~---~~v~Gi~tn~~F  421 (645)
T COG4770         372 VREGDEISPFYDPMIAKLIVHGADREEALDRLRRALAE---FEVEGIATNIPF  421 (645)
T ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH---HEECCCCCCHHH
T ss_conf             43387235553558888864388899999999999986---084474146999


No 75 
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=98.16  E-value=6e-05  Score=54.27  Aligned_cols=303  Identities=13%  Similarity=0.173  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHCCCC----CEEEEECCCCC-CC--------CCCCCC--------CCHHHHC--C-CCCEECCCCCHHHH
Q ss_conf             012235544311365----06999324344-58--------866532--------3647540--8-11101166662789
Q gi|254780673|r  144 EALRDAIAEEMRRDK----DVFIMGEEVAE-YQ--------GAYKVT--------QGLLQEF--G-CERVIDTPITEHGF  199 (467)
Q Consensus       144 ea~~~a~~e~m~~d~----~~~~~gedv~~-~~--------g~f~~t--------~gl~~~f--g-~~R~~d~pi~E~~~  199 (467)
                      .|.-+-|...|+ |+    +++-+=-|++. +|        |.|.-.        .+..-.|  . ..+++.-||+|.+.
T Consensus       496 mAFvRiL~~L~r-dk~ig~rIVPIvPDEARTFGMeglFrq~GIys~~GQ~Y~p~D~~~l~~YkEs~~GQiLeeGI~Eaga  574 (886)
T PRK09405        496 MAFVRILNILLK-DKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQKYTPVDRDQVMYYKEDKDGQILQEGINEAGA  574 (886)
T ss_pred             HHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHCHHHHHH
T ss_conf             899999999971-8144660575458630146828778643766774122670132666642108887142211123416


Q ss_pred             HHH--HHH--HHHCCC--CCHHHHHHHH-H-HHHHHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCC--CCCCCHHHHHH
Q ss_conf             989--999--887188--6445666667-8-99999999987886742117767888-799830244--57644443321
Q gi|254780673|r  200 AGI--GIG--ASFAGL--KPIVEFMTFN-F-AMQAIDQIINSAAKTRYMSGGQITTS-IVFRGPNGA--AARVAAQHSQC  268 (467)
Q Consensus       200 ~G~--a~G--~A~~G~--~Piv~~~~~~-f-~~~a~dqi~n~~ak~~~~~gg~~~~p-~v~r~p~G~--~~~~g~~Hs~~  268 (467)
                      +..  |+|  .+..|.  .||-  .+++ | ..|..|++        |. .|.+.+- .++-+..|+  -.|-|-|| |+
T Consensus       575 ~~s~~AagtSys~~g~pmIPfy--i~YsmFGfQRvgDl~--------Wa-agD~~aRGFLiGaTaGRTTL~GEGLQH-qD  642 (886)
T PRK09405        575 MASWIAAATSYSTHNLPMIPFY--IYYSMFGFQRIGDLA--------WA-AGDQQARGFLLGGTAGRTTLNGEGLQH-ED  642 (886)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEE--EEECCHHHHHHHHHH--------HH-HHHHCCCEEEEEECCCCCEECCCCCCC-CC
T ss_conf             9999987532653598530366--763000454665788--------88-633125728984078873227411036-67


Q ss_pred             H--HHHHHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECCCCCCCCCCCCCCCCCEEC-CCCCE-EEEEC---
Q ss_conf             6--887632203138665221000105556541----3783476402123333345334663121-44311-44431---
Q gi|254780673|r  269 Y--AAWYSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLENEILYGSSFEVPMVDDLVI-PIGRA-RIHRQ---  337 (467)
Q Consensus       269 ~--~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~~~ly~~~~~~p~~~~~~~-p~Gk~-~i~~~---  337 (467)
                      -  +.+.+.+||++-.-|+.+++..-++...++    .+.-|+|.=  .+|+++..-|..++-.- -|=|+ -.+++   
T Consensus       643 GhS~l~astiPnc~sYDPafayElavIv~~gl~rMy~~~edvfYYi--T~~NEny~~P~~P~g~eegIikG~Y~~~~~~~  720 (886)
T PRK09405        643 GHSHILASTIPNCISYDPAFAYEVAVIVQDGLRRMYGEQENVFYYI--TVMNENYVQPAMPEGAEEGIIKGMYKLETGEG  720 (886)
T ss_pred             CCCHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE--ECCCCCCCCCCCCCCHHHHHHHCEEECCCCCC
T ss_conf             7554788636776020633788999999999999953887649999--74676566867898628878632044233678


Q ss_pred             -CCCCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCC-------CCCH---
Q ss_conf             -68745860257888888887531004-67527973300685799999999987198999957887-------6767---
Q gi|254780673|r  338 -GSDVTIISFGIGMTYATKAAIELEKN-GIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYP-------QSSV---  405 (467)
Q Consensus       338 -G~ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~-------~gg~---  405 (467)
                       ...+.|++.|..+.++++|+++|+++ ||+++|..+.+-+-|-.+.+  .+.+.++|=--++-..       .+.-   
T Consensus       721 ~~~~vqLlgSG~il~evl~Aa~~L~~d~gV~adVWSvTS~~ELrRd~~--~~eR~N~L~P~~~~r~~yv~~~l~~~~gPv  798 (886)
T PRK09405        721 GKGKVQLLGSGTILREVIEAAEILAKDYGVAADVWSVTSFNELARDGQ--DVERWNMLHPTEEPRVPYVTQVLNDAQGPV  798 (886)
T ss_pred             CCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHHCCCCCCE
T ss_conf             896179993549899999999999883198621895488899999899--999997039987777678999847999987


Q ss_pred             --HHHHHHHHHHHHHHHCCCCCEEECCCCC-CCCCCHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf             --8999999999677642898299717778-888896676560899899999999985020
Q gi|254780673|r  406 --GSTIANQVQRKVFDYLDAPILTITGRDV-PMPYAANLEKLALPNVDEIIESVESICYKR  463 (467)
Q Consensus       406 --g~~i~~~i~e~~f~~L~~p~~ri~~~d~-p~P~~~~le~~~~p~~~~I~~av~~v~~~~  463 (467)
                        .+.-...+.+..-.++..+-..++.-.- .--+-..|-+++-.++..|+-++-..+.+.
T Consensus       799 vAasDYmr~~~dqIr~~vp~~y~~LGTDGFGRSDTR~~LR~fFEVD~~~IvvaaL~aLa~~  859 (886)
T PRK09405        799 IAATDYMKAFAEQIRAFVPRDYVVLGTDGFGRSDTREALRRFFEVDAYYVVVAALKALADE  859 (886)
T ss_pred             EEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             9966768764999997468986563588887542479999873637899999999999985


No 76 
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930    In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys.    Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis.  ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate  Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=98.09  E-value=1.2e-05  Score=59.28  Aligned_cols=81  Identities=17%  Similarity=0.265  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHCCCCCE-EEEEC-CCCCCCCHHHHHHHHHHCC-CE-EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             888888875310046752-79733-0068579999999998719-89-99957887676789999999996776428982
Q gi|254780673|r  350 MTYATKAAIELEKNGIDA-ELIDL-RTIRPMDWQTIFESVKKTG-RL-VTVEEGYPQSSVGSTIANQVQRKVFDYLDAPI  425 (467)
Q Consensus       350 ~~~a~~aa~~L~~~gi~~-~vid~-r~l~Pld~~~i~~sv~kt~-~~-i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~  425 (467)
                      +..=++.|++|.+-|-++ .|=|| =.|||==-..++++++.+. -| |=+|-| -+.|.|-+-..-..|-+-|-.|.-+
T Consensus       708 L~YYt~lA~eL~~aGaHIL~iKDMAGlLKP~AAk~L~~ALre~~PD~PiH~HTH-DtSG~ava~~~aaveAGvDvvDvAv  786 (1169)
T TIGR01235       708 LKYYTNLAEELVKAGAHILGIKDMAGLLKPAAAKLLIKALREKIPDLPIHLHTH-DTSGAAVASMLAAVEAGVDVVDVAV  786 (1169)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECC-CCHHHHHHHHHHHHHCCCCEEHHHH
T ss_conf             788999999999709803430101124428999999999973279985686266-6126899999999875886114567


Q ss_pred             EEECCC
Q ss_conf             997177
Q gi|254780673|r  426 LTITGR  431 (467)
Q Consensus       426 ~ri~~~  431 (467)
                      --+++.
T Consensus       787 ~smSG~  792 (1169)
T TIGR01235       787 DSMSGL  792 (1169)
T ss_pred             HHHCCC
T ss_conf             641045


No 77 
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.01  E-value=1.7e-05  Score=58.08  Aligned_cols=80  Identities=20%  Similarity=0.294  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHCCCCCE-EEEECC-CCCCCCHHHHHHHHHHCCCE-EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             8888888875310046752-797330-06857999999999871989-99957887676789999999996776428982
Q gi|254780673|r  349 GMTYATKAAIELEKNGIDA-ELIDLR-TIRPMDWQTIFESVKKTGRL-VTVEEGYPQSSVGSTIANQVQRKVFDYLDAPI  425 (467)
Q Consensus       349 ~~~~a~~aa~~L~~~gi~~-~vid~r-~l~Pld~~~i~~sv~kt~~~-i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~  425 (467)
                      .+..-++.|++|++.|..+ .|=||- .|||----.++..++.+--| |-+|-|- +.|.|-.-...-.+-+-+..|...
T Consensus       692 ~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~dlPIHlHTHD-TsG~~~at~~aA~~AGvDivD~A~  770 (1149)
T COG1038         692 TLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETVDLPIHLHTHD-TSGNGVATYLAAVEAGVDIVDVAM  770 (1149)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCC-CCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf             4899999999999667727876333421476999999999987448844875167-887189999999983863666654


Q ss_pred             EEEC
Q ss_conf             9971
Q gi|254780673|r  426 LTIT  429 (467)
Q Consensus       426 ~ri~  429 (467)
                      --++
T Consensus       771 ~sms  774 (1149)
T COG1038         771 ASMS  774 (1149)
T ss_pred             HHCC
T ss_conf             4214


No 78 
>KOG0368 consensus
Probab=97.75  E-value=0.0001  Score=52.63  Aligned_cols=69  Identities=16%  Similarity=0.378  Sum_probs=61.0

Q ss_pred             CCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCC
Q ss_conf             81157898774178976258985999953753334317778689899823788513269758999437777
Q gi|254780673|r   13 TMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGET   83 (467)
Q Consensus        13 sm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege~   83 (467)
                      |=+-|.+++|+|..||.|..||+-+|||.=|-.|.+.|..+|+| +.+.++| +.+.-|.+||.+..+..+
T Consensus       690 sPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G-~~i~aG~vlakL~lDdpS  758 (2196)
T KOG0368         690 SPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEG-DAIEAGSVLAKLTLDDPS  758 (2196)
T ss_pred             CCCCCCCEEEEECCCCEEECCCEEEEHEEEEEEEEEECCCCCEE-EEECCCC-CCCCCCCEEEEEECCCHH
T ss_conf             89986205899548971443872000120002445630578668-9835899-735776637887448845


No 79 
>KOG0369 consensus
Probab=97.72  E-value=0.0001  Score=52.59  Aligned_cols=13  Identities=31%  Similarity=0.690  Sum_probs=6.0

Q ss_pred             CCCC-CCCCCCHHH
Q ss_conf             5886-653236475
Q gi|254780673|r  170 YQGA-YKVTQGLLQ  182 (467)
Q Consensus       170 ~~g~-f~~t~gl~~  182 (467)
                      |||+ |.+..-|+.
T Consensus       604 WGGATFDVamRFLh  617 (1176)
T KOG0369         604 WGGATFDVAMRFLH  617 (1176)
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             38831567899875


No 80 
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.70  E-value=0.00013  Score=51.94  Aligned_cols=36  Identities=22%  Similarity=0.243  Sum_probs=30.7

Q ss_pred             CEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             3334317778689899823788513269758999437
Q gi|254780673|r   44 AVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        44 at~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      -.+.|-++.+|.|.++++++|+ .|.-|++|+.|+..
T Consensus        37 ~~~~i~a~v~G~I~~i~v~~Gd-~V~kGqvL~~ld~~   72 (347)
T PRK11578         37 RKVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVIDPE   72 (347)
T ss_pred             EEEEEECCCCEEEEEEECCCCC-EECCCCEEEEECHH
T ss_conf             8999974077899999989939-88899999998749


No 81 
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.62  E-value=0.00019  Score=50.82  Aligned_cols=42  Identities=24%  Similarity=0.216  Sum_probs=33.7

Q ss_pred             EEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             99953753334317778689899823788513269758999437
Q gi|254780673|r   37 YEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        37 ~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      -.|+-. -+++|-+..+|.|.+|++++|+ .|.-|++|+.|+..
T Consensus        80 Gtv~a~-~~v~v~~~VsG~I~~i~v~~Gd-~VkkGqvLa~iD~~  121 (415)
T PRK11556         80 GTVTAA-NTVTVRSRVDGQLMALHFQEGQ-QVKAGDLLAEIDPS  121 (415)
T ss_pred             EEEEEE-EEEEEEEEEEEEEEEEECCCCC-EECCCCEEEEECCH
T ss_conf             999864-6999987850299999858989-97899999998835


No 82 
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=97.59  E-value=0.00075  Score=46.56  Aligned_cols=263  Identities=16%  Similarity=0.246  Sum_probs=136.1

Q ss_pred             CCEECCCCCHHHHHHH----HHHHHHCCCCCHHHHHHH-H-HHH-HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC-
Q ss_conf             1101166662789989----999887188644566666-7-899-9999999878867421177678887998302445-
Q gi|254780673|r  187 ERVIDTPITEHGFAGI----GIGASFAGLKPIVEFMTF-N-FAM-QAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAA-  258 (467)
Q Consensus       187 ~R~~d~pi~E~~~~G~----a~G~A~~G~~Piv~~~~~-~-f~~-~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~-  258 (467)
                      .+++..||+|.+.+..    |.-+|..|. |.+-|..| . |-. |--|++        |..|-+..-..++-+-.|++ 
T Consensus       573 GQiLeEGInEAGa~sswiAA~TsYs~hg~-pmIPfYIfYSMFGFQRvGDl~--------WAAgD~~aRGFLlGaTAGRTT  643 (898)
T PRK13012        573 GQILEEGISEAGAISSWIAAATSYSVHGL-PMLPFYIYYSMFGFQRIGDLI--------WAAADQRARGFLLGATAGRTT  643 (898)
T ss_pred             CCCHHHCCCCHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHCCHHHHHHHH--------HHHCCCCCCEEEEECCCCCCC
T ss_conf             72222131000058999875003112798-540568876640305676799--------874211135156402567420


Q ss_pred             -CCCCHHHHHHHHH--HHHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECCCCCCCCCCCCCCCCCEEC-CC-
Q ss_conf             -7644443321688--7632203138665221000105556541----3783476402123333345334663121-44-
Q gi|254780673|r  259 -ARVAAQHSQCYAA--WYSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLENEILYGSSFEVPMVDDLVI-PI-  329 (467)
Q Consensus       259 -~~~g~~Hs~~~~~--~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~~~ly~~~~~~p~~~~~~~-p~-  329 (467)
                       .|-|-|| |+-+|  +.+.|||.+-.-|+.+++..-++..-++    ...-|+|.=  .+|+.+..-|..++-.- -| 
T Consensus       644 LnGEGLQH-qDGHShllAstiPnc~sYDPafaYElavIv~~Gl~rMy~~~edvfYYi--Tv~NENY~qPamPeg~eeGIi  720 (898)
T PRK13012        644 LGGEGLQH-QDGHSHLAASTIPNCRAYDPAFAYELAVIVDDGMRRMYEEQEDVFYYL--TVMNENYAQPALPEGAEEGIL  720 (898)
T ss_pred             CCCCCCCC-CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE--EECCCCCCCCCCCCCCHHHHH
T ss_conf             36664456-776126887645653004753366669999999999985798679998--404646658688997477686


Q ss_pred             -CCEEE----EECCCCCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCC--
Q ss_conf             -31144----43168745860257888888887531004-67527973300685799999999987198999957887--
Q gi|254780673|r  330 -GRARI----HRQGSDVTIISFGIGMTYATKAAIELEKN-GIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYP--  401 (467)
Q Consensus       330 -Gk~~i----~~~G~ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~--  401 (467)
                       |--++    -..+..+.|++.|..+.++++|++.|+++ ||+++|..+.+-+-|-.+.+  .+.+.++|=--++-..  
T Consensus       721 KGmY~~~~~~~~~~~~VqLLGSG~Il~evi~AaeiL~~d~gV~adVWSvTSf~ELrRda~--~~eR~N~LhP~~~~r~sy  798 (898)
T PRK13012        721 KGMYRLRAAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGL--AAERANLLGPAEEPRVPY  798 (898)
T ss_pred             HCCEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH--HHHHHHHCCCCCCCCCCH
T ss_conf             310442336778995389992569999999999999984298620672488899998799--999998409987777778


Q ss_pred             -----CCCH-----HHHHHHHHHHHHHHHCCCCCEEECCCCC-CCCCCHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf             -----6767-----8999999999677642898299717778-888896676560899899999999985020
Q gi|254780673|r  402 -----QSSV-----GSTIANQVQRKVFDYLDAPILTITGRDV-PMPYAANLEKLALPNVDEIIESVESICYKR  463 (467)
Q Consensus       402 -----~gg~-----g~~i~~~i~e~~f~~L~~p~~ri~~~d~-p~P~~~~le~~~~p~~~~I~~av~~v~~~~  463 (467)
                           .+.-     .+.-...+.|..=.++..+-..++.-.- .--+-..|-+++-.++..|+-++-..+.+.
T Consensus       799 v~~~L~~~~gPvVAaSDYmra~pdqIr~~vp~~y~vLGTDGFGRSDTR~~LR~fFEVDa~~IVvAaL~aLa~e  871 (898)
T PRK13012        799 VTQCLAGTRGPVIAATDYVRAVPEQIRAFVPRRYVTLGTDGFGRSDTRAALRRFFEVDRHSIVLAALKALADE  871 (898)
T ss_pred             HHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             9998379999879967768764999998468986563588887542579999874637889999999999985


No 83 
>PRK03598 hypothetical protein; Provisional
Probab=97.45  E-value=0.00081  Score=46.33  Aligned_cols=40  Identities=15%  Similarity=0.233  Sum_probs=32.8

Q ss_pred             EEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             9953753334317778689899823788513269758999437
Q gi|254780673|r   38 EVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        38 eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      .||.+  .+.|-+..+|+|.+++|++| +.|.-|++|+.|+..
T Consensus        38 ~ve~~--~V~vs~~v~G~V~~v~V~eG-d~Vk~Gq~La~LD~~   77 (331)
T PRK03598         38 NVDIR--TVNLSFRVGGRLASLAVDEG-DAVKAGQVLGELDHA   77 (331)
T ss_pred             EEEEE--EEEECCCCCEEEEEEECCCC-CEECCCCEEEEECCH
T ss_conf             99999--99991327759999986897-987799889998808


No 84 
>PRK05261 putative phosphoketolase; Provisional
Probab=97.34  E-value=0.0045  Score=41.10  Aligned_cols=256  Identities=17%  Similarity=0.239  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHHCCCCCEE-EEECCC-C--CCCCCCCCCCCHHH-H-CC-------CCCEECCCCCHHHHHHHHHHHHHCC
Q ss_conf             012235544311365069-993243-4--45886653236475-4-08-------1110116666278998999988718
Q gi|254780673|r  144 EALRDAIAEEMRRDKDVF-IMGEEV-A--EYQGAYKVTQGLLQ-E-FG-------CERVIDTPITEHGFAGIGIGASFAG  210 (467)
Q Consensus       144 ea~~~a~~e~m~~d~~~~-~~gedv-~--~~~g~f~~t~gl~~-~-fg-------~~R~~d~pi~E~~~~G~a~G~A~~G  210 (467)
                      .++.+-+++.|+.||+-| +||-|= .  ..+.+|.+|+.-.. . +.       ..||++ =+||+.+-|..-|+-+.|
T Consensus       395 ~~lg~~lrdvi~~Np~~fRvf~PDEt~SNRL~av~e~t~r~w~~~~~~~d~~la~~GRVie-~LSEH~cqGwleGYlLTG  473 (786)
T PRK05261        395 RVLGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPPDEHLSPDGRVME-VLSEHLCEGWLEGYLLTG  473 (786)
T ss_pred             HHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHCCC
T ss_conf             9999999999996887661038865433441789987477403666785322477874656-556888878876532158


Q ss_pred             CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC-----CCCEEEEEECCCCC---CCCHHHHHH-H-HHHHHHH-C
Q ss_conf             86445-6666678999999999878867421177-67-----88879983024457---644443321-6-8876322-0
Q gi|254780673|r  211 LKPIV-EFMTFNFAMQAIDQIINSAAKTRYMSGG-QI-----TTSIVFRGPNGAAA---RVAAQHSQC-Y-AAWYSHV-P  277 (467)
Q Consensus       211 ~~Piv-~~~~~~f~~~a~dqi~n~~ak~~~~~gg-~~-----~~p~v~r~p~G~~~---~~g~~Hs~~-~-~~~~~~i-P  277 (467)
                      .+=+. .|--  | .+-.|-.+|+-+||.-++.. .+     +++++..   -..|   ..|.+|..- + ..+..-- .
T Consensus       474 RhGlf~sYEA--F-~~ivdSM~~Qh~KwLk~~~e~~WR~pi~SlN~llT---S~~WrQdHNGfSHQDPgfid~vl~k~~~  547 (786)
T PRK05261        474 RHGFFSSYEA--F-IHIVDSMFNQHAKWLKVAREIPWRKPIPSLNYLLT---SHVWRQDHNGFSHQDPGFIDHVANKKPD  547 (786)
T ss_pred             CCCCEEEHHH--H-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE---ECEEECCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             7764211898--9-99999999999999998652778898766126862---0113336787666796599998744888


Q ss_pred             CCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCC---CCC----EECCCCCEEEEE--CC--CCCEEEEH
Q ss_conf             31386652210001055565413783476402123333345334---663----121443114443--16--87458602
Q gi|254780673|r  278 GLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFEVPM---VDD----LVIPIGRARIHR--QG--SDVTIISF  346 (467)
Q Consensus       278 gl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~~p~---~~~----~~~p~Gk~~i~~--~G--~ditii~~  346 (467)
                      =.+|..|.|++-+-..+..|+|+.+-+-++=     ..+.+.|.   .++    ..--+|-+....  .|  -||-+.|+
T Consensus       548 ~~RvYlPpDaNtlLav~d~clrsr~~iNviV-----a~Kqp~pq~ls~eeA~~h~~~G~~iW~wAS~~~~~ePDVVla~~  622 (786)
T PRK05261        548 VIRVYLPPDANTLLAVADHCLRSRNYINVIV-----AGKQPRPQWLSMDEARKHCTKGLGIWDWASNDDGEEPDVVLACA  622 (786)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCEEEEEE-----ECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCEEEECC
T ss_conf             4799889966469999999997249168999-----77877774269999999997167386433468899999899816


Q ss_pred             H-HHHHHHHHHHHHHHCC--CCCEEE---EECCCCC-----C--CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             5-7888888887531004--675279---7330068-----5--799999999987198999957887676789999999
Q gi|254780673|r  347 G-IGMTYATKAAIELEKN--GIDAEL---IDLRTIR-----P--MDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQV  413 (467)
Q Consensus       347 G-~~~~~a~~aa~~L~~~--gi~~~v---id~r~l~-----P--ld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i  413 (467)
                      | ..+.+++.|+.+|.++  .+.+.+   +||-.|.     |  |+-+.+-...-+.+.+|+.-.|+     -..|-..+
T Consensus       623 Gd~pt~E~lAA~~lLr~~~P~lkiR~VNVvDL~~L~~~~~hphgLsd~~Fd~lFt~DkpViFafHGY-----p~lI~~L~  697 (786)
T PRK05261        623 GDVPTLETLAAVDLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAFHGY-----PWLIHRLT  697 (786)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECHHCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCC-----HHHHHHHH
T ss_conf             7466799999999999868884799999875031179887977799899997568998879980697-----89999986


Q ss_pred             HHH
Q ss_conf             996
Q gi|254780673|r  414 QRK  416 (467)
Q Consensus       414 ~e~  416 (467)
                      ..+
T Consensus       698 ~~R  700 (786)
T PRK05261        698 YRR  700 (786)
T ss_pred             CCC
T ss_conf             478


No 85 
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=97.32  E-value=0.012  Score=38.25  Aligned_cols=293  Identities=18%  Similarity=0.254  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHHHHHHCCCC----CEEEEECCCCC-CC--CCCCCCCCHHH----HCC--------------CCCEECCCC
Q ss_conf             0000012235544311365----06999324344-58--86653236475----408--------------111011666
Q gi|254780673|r  140 ITVREALRDAIAEEMRRDK----DVFIMGEEVAE-YQ--GAYKVTQGLLQ----EFG--------------CERVIDTPI  194 (467)
Q Consensus       140 ~TvRea~~~a~~e~m~~d~----~~~~~gedv~~-~~--g~f~~t~gl~~----~fg--------------~~R~~d~pi  194 (467)
                      ++.--|.-..|.+.++ |+    +++-+=-|++. +|  |-|+ ..|+..    +|-              ..+++.-||
T Consensus       492 iSTtmAfvr~l~~llk-dk~ig~riVpiipDearTfgmeg~f~-~~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGI  569 (887)
T COG2609         492 ISTTMAFVRILNELLK-DKEIGKRIVPIIPDEARTFGMEGLFR-QIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGI  569 (887)
T ss_pred             CHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHCCCHHHHH-HCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf             0348999999999972-11446724134674232056044332-023116777657745426554100187755287521


Q ss_pred             CHHHHHHH--HHHHH--HCCCC--CHHH-HHHH------HHHHHHHHHHHHHHHHHH-HHCCCCCCCCEEEEEECCCCCC
Q ss_conf             62789989--99988--71886--4456-6666------789999999998788674-2117767888799830244576
Q gi|254780673|r  195 TEHGFAGI--GIGAS--FAGLK--PIVE-FMTF------NFAMQAIDQIINSAAKTR-YMSGGQITTSIVFRGPNGAAAR  260 (467)
Q Consensus       195 ~E~~~~G~--a~G~A--~~G~~--Piv~-~~~~------~f~~~a~dqi~n~~ak~~-~~~gg~~~~p~v~r~p~G~~~~  260 (467)
                      +|.+.+..  |+|.+  ..|.+  |+-. |.-|      |.++.|.||--      + |+-|+--. -.+       -.+
T Consensus       570 nE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~waA~dq~A------RgFLLgaTag-rtT-------Lng  635 (887)
T COG2609         570 NEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLLWAAGDQDA------RGFLLGATAG-RTT-------LNG  635 (887)
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH------CCEEEEECCC-CCE-------ECC
T ss_conf             22037999998752543379641256454212446558889988776641------1036652578-733-------376


Q ss_pred             CCHHHHHHHHHHH--HHHCCCEEEEEECCHHCCCHHHHHHH----C-C-CCEEEECCCCCCCCCCCCCCCCCEE-CCC--
Q ss_conf             4444332168876--32203138665221000105556541----3-7-8347640212333334533466312-144--
Q gi|254780673|r  261 VAAQHSQCYAAWY--SHVPGLKVVIPYTASDAKGLLKAAIR----D-P-NPVIFLENEILYGSSFEVPMVDDLV-IPI--  329 (467)
Q Consensus       261 ~g~~Hs~~~~~~~--~~iPgl~V~~P~~~~d~~~ll~~ai~----~-~-~Pvi~le~~~ly~~~~~~p~~~~~~-~p~--  329 (467)
                      -|-|| |+.+|.+  +.+||+.-.-|+.+.+..-++...++    . . +--.|+.   +++++..-|..+... --|  
T Consensus       636 EGlqH-edghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~~~yYit---~~ne~~~qPamp~gae~gI~k  711 (887)
T COG2609         636 EGLQH-EDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYIT---LSNENYPQPAMPEGAEEGIIK  711 (887)
T ss_pred             CCCCC-CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE---ECCCCCCCCCCCCCCHHHHHH
T ss_conf             53345-55543166514788512484378898999999999972356678079999---646777899988861665654


Q ss_pred             CCEEEEE--C--CCCCEEEEHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCC----------------CH---HHHHH
Q ss_conf             3114443--1--6874586025788888888753100-4675279733006857----------------99---99999
Q gi|254780673|r  330 GRARIHR--Q--GSDVTIISFGIGMTYATKAAIELEK-NGIDAELIDLRTIRPM----------------DW---QTIFE  385 (467)
Q Consensus       330 Gk~~i~~--~--G~ditii~~G~~~~~a~~aa~~L~~-~gi~~~vid~r~l~Pl----------------d~---~~i~~  385 (467)
                      |--....  +  +..+-|++.|....++++|++.|++ .|+.++|..+.+-.-|                ..   +.+..
T Consensus       712 G~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v~yv~~  791 (887)
T COG2609         712 GIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTETPRVPYVAQ  791 (887)
T ss_pred             CEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             21575337878873489972413079999999987532165667353366888730357778888518987776048998


Q ss_pred             HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CCCCHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf             9987198999957887676789999999996776428982997177788--88896676560899899999999985020
Q gi|254780673|r  386 SVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVP--MPYAANLEKLALPNVDEIIESVESICYKR  463 (467)
Q Consensus       386 sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p--~P~~~~le~~~~p~~~~I~~av~~v~~~~  463 (467)
                      -....+-+|.+-+..+  .+.+-|-+++-.+        .+.++ .|..  --+-++|-++|-.++.-|+.|+-..+.++
T Consensus       792 ~L~~~~p~Va~tDy~~--~~a~qir~~vp~~--------y~vLG-tdgFGrSdsr~~Lr~~fevDa~~vv~Aal~~La~~  860 (887)
T COG2609         792 VLNADGPVVAVTDYMK--LFAEQIRAVVPQR--------YRVLG-TDGFGRSDSRENLRRFFEVDAYYVVVAALSALAKR  860 (887)
T ss_pred             HHCCCCCEEEECCCHH--HHHHHHHCCCCCE--------EEEEC-CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             7436897688520037--6899975106871--------59941-47778667679999984465789999999998327


No 86 
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=97.31  E-value=0.0023  Score=43.12  Aligned_cols=267  Identities=15%  Similarity=0.189  Sum_probs=134.6

Q ss_pred             CCCEECCCCCHHHHHH----HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC--CC
Q ss_conf             1110116666278998----99998871886445666667899999999987886742117767888799830244--57
Q gi|254780673|r  186 CERVIDTPITEHGFAG----IGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGA--AA  259 (467)
Q Consensus       186 ~~R~~d~pi~E~~~~G----~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~--~~  259 (467)
                      ..+++..||+|.+.+.    .|.-+|..|. |.+-|..| |.|-.| |=+.+.   .|..|-+..-..++-+-.|+  -.
T Consensus       559 ~GQILeEGInEAGa~sswiAAaTsYsth~~-pmIPfYIf-YSMFGF-QRvGDl---~WAAgD~raRGFLiGaTAGRTTLn  632 (889)
T TIGR03186       559 DGQILEEGISEAGAISSWIAAATSYSVHDL-PMLPFYIY-YSMFGF-QRIGDL---IWAAADQRARGFLIGATSGKTTLG  632 (889)
T ss_pred             CCCCHHHCHHHHHHHHHHHHHHHHHHCCCC-EEEHHHHH-HHHHCC-CCCCCH---HHHHHHHCCCCEEEEECCCCCCCC
T ss_conf             875233040233028999998751103895-21489999-987513-212533---776302103653787404544235


Q ss_pred             CCCHHHHHHHHHH--HHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEEEECCCCCCCCCCCCCCCCCEEC-----C
Q ss_conf             6444433216887--632203138665221000105556541----3783476402123333345334663121-----4
Q gi|254780673|r  260 RVAAQHSQCYAAW--YSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVIFLENEILYGSSFEVPMVDDLVI-----P  328 (467)
Q Consensus       260 ~~g~~Hs~~~~~~--~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi~le~~~ly~~~~~~p~~~~~~~-----p  328 (467)
                      |-|-|| |+-+|+  .+.+||..-.-|+.+++..-+++.-++    .+.-|+|.=  -+|+.+..-|..++-..     -
T Consensus       633 GEGLQH-qDGHShllAstiPnc~sYDPafaYElAvIi~dGl~RMy~~~edvfYYi--Tv~NEny~~P~mP~~~~~~v~~g  709 (889)
T TIGR03186       633 GEGLQH-QDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYL--TVTNENYAQPSLPEDRLDAVRRG  709 (889)
T ss_pred             CCCCCC-CCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCCCCCCCCCHHHHHHH
T ss_conf             553211-662078886537875010652200227989999999986688747876--30354556878999826678602


Q ss_pred             CCCE-EEE----ECCCCCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCC-
Q ss_conf             4311-444----3168745860257888888887531004-67527973300685799999999987198999957887-
Q gi|254780673|r  329 IGRA-RIH----RQGSDVTIISFGIGMTYATKAAIELEKN-GIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYP-  401 (467)
Q Consensus       329 ~Gk~-~i~----~~G~ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~-  401 (467)
                      |=|+ -..    ..+..+.+++.|..+.++++|++.|+++ ||+++|..+.+-+-|-.+..  .+.+.++|---++... 
T Consensus       710 I~kG~Y~~~~~~~~~~~vqLlgSG~il~ev~~Aa~iL~~d~gV~adVWSvTS~~EL~Rd~~--~~er~n~LhP~~~~~~~  787 (889)
T TIGR03186       710 ILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGR--AAERAQRLGDAERPPSP  787 (889)
T ss_pred             HHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHH--HHHHHHHCCCCCCCCCC
T ss_conf             4564320354567896379991579999999999999872099641782588899987699--99999860998777778


Q ss_pred             ------CC--C---HHHHHHHHHHHHHHHHCCCCCEEECCCCC-CCCCCHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf             ------67--6---78999999999677642898299717778-888896676560899899999999985020
Q gi|254780673|r  402 ------QS--S---VGSTIANQVQRKVFDYLDAPILTITGRDV-PMPYAANLEKLALPNVDEIIESVESICYKR  463 (467)
Q Consensus       402 ------~g--g---~g~~i~~~i~e~~f~~L~~p~~ri~~~d~-p~P~~~~le~~~~p~~~~I~~av~~v~~~~  463 (467)
                            .+  |   -.+.-...+.+..-.++..+-..++.-.- .--+-..|-+++-.++..|+-++-+.+.+.
T Consensus       788 yv~~~L~~~~gPvvAasDymr~~~dqIr~~vp~~y~~LGTDGFGrSDTR~~LR~fFeVD~~~IvvaAL~~La~~  861 (889)
T TIGR03186       788 HVAQALGATQGPVIAATDYVRAVPELIRAYVPRRYVTLGTDGFGRSDTRAALRAFFEVDRASIVIAALQALADD  861 (889)
T ss_pred             HHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             79998279999879967666656999997469987573488887541579999875828899999999999985


No 87 
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.28  E-value=0.0017  Score=44.03  Aligned_cols=49  Identities=18%  Similarity=0.164  Sum_probs=34.9

Q ss_pred             CCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             976258985999953753334317778689899823788513269758999437
Q gi|254780673|r   27 GDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        27 GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      ...++-||.-++-  |  .+.|-+..+|.|.+++|++| +.|.-|++|+.|++.
T Consensus        36 ~~~~~TddA~V~~--~--iv~Is~~VsG~V~~V~V~eg-q~VkkGq~L~~LD~~   84 (348)
T PRK10476         36 DSAPSTDDAYIDA--D--VVHVASEVGGRIVELAVTEN-QAVKKGDLLFRIDPR   84 (348)
T ss_pred             CCEEECCCEEEEE--E--EEEEECCCCEEEEEEEECCC-CEECCCCEEEEECCH
T ss_conf             6401436259997--9--99993434459999994699-986489789997768


No 88 
>pfam01855 POR_N domain. This family includes the N terminal structural domain of the pyruvate ferredoxin oxidoreductase. This domain binds thiamine diphosphate, and along with domains II and IV, is involved in inter subunit contacts. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.
Probab=97.26  E-value=0.002  Score=43.63  Aligned_cols=108  Identities=20%  Similarity=0.161  Sum_probs=67.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCCCCHHHHHHH
Q ss_conf             666627899899998871886445666667899999999987886742117767888799830--244576444433216
Q gi|254780673|r  192 TPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP--NGAAARVAAQHSQCY  269 (467)
Q Consensus       192 ~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p--~G~~~~~g~~Hs~~~  269 (467)
                      -.=+|.+.+++++|+|.+|.|.+.. +..-=+.++.|.+..-+         ...+|+|+-..  .|...+. +.|....
T Consensus        41 ~~e~E~~A~~~~~GAs~aGara~ta-Ts~~Gl~lm~e~l~~aa---------g~~~P~V~~v~~R~~~~~gl-~~~~eq~  109 (230)
T pfam01855        41 QMESEIGAISAVIGAAAAGARAMTA-TSGQGLLLMIENLGKAA---------GEELPIVIHVVARAGPSPGL-SIFGDQG  109 (230)
T ss_pred             EECCHHHHHHHHHHHHHHCCCEEEE-CCCCCHHHHHHHHHHHH---------HCCCCEEEEEEECCCCCCCC-CCCCCHH
T ss_conf             8088799999999999848620440-26752767567888998---------73688599999667899877-6665137


Q ss_pred             HHHHHHHCCCEEEEEECCHHCCCHHHH----HHHCCCCEEEECCC
Q ss_conf             887632203138665221000105556----54137834764021
Q gi|254780673|r  270 AAWYSHVPGLKVVIPYTASDAKGLLKA----AIRDPNPVIFLENE  310 (467)
Q Consensus       270 ~~~~~~iPgl~V~~P~~~~d~~~ll~~----ai~~~~Pvi~le~~  310 (467)
                      ..++..--|+-|++|+|++|++.+...    |.+...||+.+-+.
T Consensus       110 D~~~~rd~g~~vl~~~~~QEa~d~~~~A~~lae~~~~Pv~v~~Dg  154 (230)
T pfam01855       110 DLMAARDTGWIVLAPENVQEAFDLALVAFNLAEKVRTPVIHLFDG  154 (230)
T ss_pred             HHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             899998569089946999999999999999999988998998256


No 89 
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.22  E-value=0.0019  Score=43.71  Aligned_cols=57  Identities=14%  Similarity=0.061  Sum_probs=39.5

Q ss_pred             EECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             74178976258985999953753334317778689899823788513269758999437
Q gi|254780673|r   22 WKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        22 W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      ..++.++.-..-+..-.|+.. -.+++-+..+|.|.++++++|+ .|.-|++|+.|+..
T Consensus        41 ~~v~~~~~~~~~~~~G~v~a~-~~v~l~~~v~G~v~~v~v~~Gd-~V~kGq~La~lD~~   97 (385)
T PRK09578         41 VTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQ-EVKQGAVLFRIDPA   97 (385)
T ss_pred             EEEEEECCCEEEEEEEEEEEE-EEEEEEEECCEEEEEEEECCCC-EECCCCEEEEECCH
T ss_conf             998773322699999999987-9999996644699999807999-87389889998534


No 90 
>TIGR03077 not_gcvH glycine cleavage protein H homolog, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.19  E-value=0.00047  Score=47.99  Aligned_cols=41  Identities=22%  Similarity=0.251  Sum_probs=37.0

Q ss_pred             ECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf             41789762589859999537533343177786898998237
Q gi|254780673|r   23 KKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPN   63 (467)
Q Consensus        23 ~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~e   63 (467)
                      +.++|+.|++||.+++||+.|++.|+.||.+|+|.++--..
T Consensus        37 lp~~G~~v~~g~~~~~vEs~K~~~~i~sPvsG~VvevN~~l   77 (110)
T TIGR03077        37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIAL   77 (110)
T ss_pred             CCCCCCEEECCCEEEEEEECEEEECCCCCCCEEEEEEHHHH
T ss_conf             78999988579859999965161202078766999866845


No 91 
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.15  E-value=0.0041  Score=41.39  Aligned_cols=141  Identities=25%  Similarity=0.282  Sum_probs=86.4

Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHC--CCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             554431136506999324344588665323647540--811101166662789989999887188644566666789999
Q gi|254780673|r  149 AIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEF--GCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQA  226 (467)
Q Consensus       149 a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~f--g~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a  226 (467)
                      |++|.|+..---.+||  +  .|+.   ...|.+.+  .+.+-+.....|++...+|.|+|..+.+|++.....-.++.+
T Consensus         2 Ala~~L~~~GV~~vFg--i--pG~~---~~~l~dal~~~~~~~~v~~~hE~~A~~mAdgyar~~g~~v~~~t~GpG~~n~   74 (154)
T cd06586           2 AFAEVLTAWGVRHVFG--Y--PGDE---ISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNA   74 (154)
T ss_pred             HHHHHHHHCCCCEEEE--C--CCCC---HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHH
T ss_conf             7899999879998998--6--8703---7999999986399579912858899999999999749948996379579989


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEE-CC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHH----HHHC
Q ss_conf             9999987886742117767888799830-24-4576444433216887632203138665221000105556----5413
Q gi|254780673|r  227 IDQIINSAAKTRYMSGGQITTSIVFRGP-NG-AAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKA----AIRD  300 (467)
Q Consensus       227 ~dqi~n~~ak~~~~~gg~~~~p~v~r~p-~G-~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~----ai~~  300 (467)
                      +..|.+ |.        .-+.||++.+. .+ ...+.+.++..+...+|+.+....... .++.++...++.    +...
T Consensus        75 ~~gl~~-A~--------~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v-~~~~~~~~~l~~A~~~a~~~  144 (154)
T cd06586          75 INGLAD-AA--------AEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISS-PSPAELPAGIDHAIRTAYAS  144 (154)
T ss_pred             HHHHHH-HH--------HCCCCEEEEECCCCHHHCCCCCCCCHHHHHHHHHHHHEEEEC-CCHHHHHHHHHHHHHHHHCC
T ss_conf             999999-98--------756988999668887662789883113999999998648994-99999999999999998549


Q ss_pred             CCCEEE
Q ss_conf             783476
Q gi|254780673|r  301 PNPVIF  306 (467)
Q Consensus       301 ~~Pvi~  306 (467)
                      |+||..
T Consensus       145 pGPv~l  150 (154)
T cd06586         145 QGPVVV  150 (154)
T ss_pred             CCCEEE
T ss_conf             987898


No 92 
>KOG0559 consensus
Probab=97.13  E-value=0.0015  Score=44.40  Aligned_cols=28  Identities=18%  Similarity=0.402  Sum_probs=26.4

Q ss_pred             CEEEEEEEECCCCCEECCCCEEEEEECC
Q ss_conf             1578987741789762589859999537
Q gi|254780673|r   15 TEGNIAKWKKNEGDLIKQGDIIYEVETD   42 (467)
Q Consensus        15 ~eG~i~~W~vk~GD~V~~gd~l~eiETD   42 (467)
                      ..|+|.+.+||+||+|+.|+.|+.|++-
T Consensus       122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g  149 (457)
T KOG0559         122 ASGVITELLVKDGDTVTPGQKLAKISPG  149 (457)
T ss_pred             CCCEEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             7642457740789750478645773588


No 93 
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.12  E-value=0.0025  Score=42.88  Aligned_cols=33  Identities=15%  Similarity=0.190  Sum_probs=28.9

Q ss_pred             EEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf             3431777868989982378851326975899943
Q gi|254780673|r   46 MEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ   79 (467)
Q Consensus        46 ~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~   79 (467)
                      +-|-+..+|.|.+++|.+| +.|.-|++|+.|+.
T Consensus        48 v~Vsp~VsG~V~eV~V~dn-q~VkkGdvL~~ID~   80 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDN-QLVKKGQVLFTIDQ   80 (310)
T ss_pred             EEEECCCCEEEEEEECCCC-CEECCCCEEEEECC
T ss_conf             9993667469999991794-98769988999876


No 94 
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.12  E-value=0.00066  Score=46.98  Aligned_cols=40  Identities=23%  Similarity=0.312  Sum_probs=36.7

Q ss_pred             ECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf             4178976258985999953753334317778689899823
Q gi|254780673|r   23 KKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCP   62 (467)
Q Consensus        23 ~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~   62 (467)
                      +.++|+.|++||.+++||+.|++.|+.||.+|+|.++--+
T Consensus        38 lp~~G~~v~~g~~~~~iEs~K~~~~i~sPvsG~VvevN~~   77 (113)
T PRK00624         38 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNLA   77 (113)
T ss_pred             CCCCCCEEECCCEEEEEEECCEEECCCCCCCEEEEEEHHH
T ss_conf             7999998847985999996524411218866499985785


No 95 
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.11  E-value=0.029  Score=35.41  Aligned_cols=310  Identities=16%  Similarity=0.112  Sum_probs=163.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC----CCCCC----C----CCCCCHHHHCCCCCEECCCCCH
Q ss_conf             3100000000000000122355443113650699932434----45886----6----5323647540811101166662
Q gi|254780673|r  129 DSSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVA----EYQGA----Y----KVTQGLLQEFGCERVIDTPITE  196 (467)
Q Consensus       129 ~~~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~----~~~g~----f----~~t~gl~~~fg~~R~~d~pi~E  196 (467)
                      +.-.......-+|=-|||-+-+....++|...   |.+.+    .|.|.    |    --.+.++++.  +=+|--++.|
T Consensus        19 dky~~~~G~v~ltG~QALVRl~l~Q~~~D~~~---GlnTagfvSGYrGSPLgg~D~~l~~a~~~L~~~--~I~f~Pg~NE   93 (1168)
T PRK13030         19 DNYTATRGRIFLTGTQALVRLLLMQRRRDRAR---GLNTAGFVSGYRGSPLGGVDQALWKAKKLLDAS--DIRFLPGINE   93 (1168)
T ss_pred             CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCEECCCCCH
T ss_conf             04026778687525589999999999999976---998551305899998217899999988568762--9776576578


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf             7899899998871886445666-----667---89999999998788674211776788879983024457644443321
Q gi|254780673|r  197 HGFAGIGIGASFAGLKPIVEFM-----TFN---FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQC  268 (467)
Q Consensus       197 ~~~~G~a~G~A~~G~~Piv~~~-----~~~---f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~  268 (467)
                      .-....--|--+.++.|=..+-     .+.   =.-|+.|-+.|--     +.|..-.-.|+.-+-.-.+......-+||
T Consensus        94 dLaATavwGsQq~~~~~~~~~dGVfg~WYGKgPGvDRsgD~~rHaN-----~~Gts~~GGvl~~~GDDh~~kSSt~~~qS  168 (1168)
T PRK13030         94 DLAATAVLGTQQVEADPERTVDGVFAMWYGKGPGVDRAGDALKHGN-----AYGSSPHGGVLVVAGDDHGCVSSSMPHQS  168 (1168)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHH-----CCCCCCCCCEEEEEECCCCCCCCCCHHHH
T ss_conf             9999998734234458998655279982077788643255876421-----23789989989998259996217765460


Q ss_pred             HHHHHHHHCCCEEEEEECCHHCCCHHHH--HH-----------------------H-CCCCEEEECC--CCC-----CCC
Q ss_conf             6887632203138665221000105556--54-----------------------1-3783476402--123-----333
Q gi|254780673|r  269 YAAWYSHVPGLKVVIPYTASDAKGLLKA--AI-----------------------R-DPNPVIFLEN--EIL-----YGS  315 (467)
Q Consensus       269 ~~~~~~~iPgl~V~~P~~~~d~~~ll~~--ai-----------------------~-~~~Pvi~le~--~~l-----y~~  315 (467)
                      -. .|.+. +|-|++|++.+|...+=..  ++                       . ++.++-|..+  ..+     .-+
T Consensus       169 e~-~~~~~-~mPvl~Pa~vqe~ld~Gl~g~alSR~sG~WVg~K~vtd~vessasvd~~~~r~~~~~P~~~~~~~~gl~~r  246 (1168)
T PRK13030        169 DF-ALIAW-HMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSSVDLDPLRTRFPAPEGFTPPAGGLHNR  246 (1168)
T ss_pred             HH-HHHHC-CCCEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99-99974-99856899989999989999999877484332678632102246997786655566998767898873235


Q ss_pred             CCCCCCCC-----CEEC----------CCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHC-----CCCCEEEEECCCC
Q ss_conf             34533466-----3121----------44311444316874586025788888888753100-----4675279733006
Q gi|254780673|r  316 SFEVPMVD-----DLVI----------PIGRARIHRQGSDVTIISFGIGMTYATKAAIELEK-----NGIDAELIDLRTI  375 (467)
Q Consensus       316 ~~~~p~~~-----~~~~----------p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~-----~gi~~~vid~r~l  375 (467)
                      ..+.|...     ++.+          +|.+..+-.....+-||+.|.......+|-+.|--     +.+...+.-+-..
T Consensus       247 ~~d~~~~qE~rl~~~kl~aa~afaraN~ldr~~~~~~~~rlGIVa~GKay~Dv~~AL~~LGid~~~~~~~Gi~l~Kvgm~  326 (1168)
T PRK13030        247 WPDLPSLAIEARLAAKLDAVRAFARANSIDRWIAPSPNARVGIVTCGKAHLDLMEALRRLGLDVADLRAAGVRIYKVGLS  326 (1168)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCC
T ss_conf             78982589999999899999999986788635405999847999568449999999998599966886449469984476


Q ss_pred             CCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEECCCCC---C-CCCCHHHHHHCCCCHH
Q ss_conf             85799999999987198999957887676789999999996776428-98299717778---8-8889667656089989
Q gi|254780673|r  376 RPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLD-APILTITGRDV---P-MPYAANLEKLALPNVD  450 (467)
Q Consensus       376 ~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~-~p~~ri~~~d~---p-~P~~~~le~~~~p~~~  450 (467)
                      +|||-+.+.+-++.-..++||||-.      +-|-..+.+..|+.-+ ..|+.++-.|-   | +|.      .+-.+..
T Consensus       327 wPLe~~~~~~Fa~gldeIlVVEEKr------~~iE~q~k~~Ly~~~~~~rp~i~GK~d~~G~~llp~------~geL~~~  394 (1168)
T PRK13030        327 WPLEPTRIRRFADGLEEILVIEEKR------PVIEQQIKDYLYNRPEGARPRVVGKHDAAGAPLLPE------LGELRPS  394 (1168)
T ss_pred             CCCCHHHHHHHHHCCCEEEEEECCH------HHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC------CCCCCHH
T ss_conf             5668799999983678699995036------779999999973686678875870338997963676------6775999


Q ss_pred             HHHHHHHHHHCC
Q ss_conf             999999998502
Q gi|254780673|r  451 EIIESVESICYK  462 (467)
Q Consensus       451 ~I~~av~~v~~~  462 (467)
                      .|..++-+.+.+
T Consensus       395 ~ia~~l~~rl~~  406 (1168)
T PRK13030        395 LIAPVLAARLAR  406 (1168)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999986


No 96 
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.11  E-value=0.0038  Score=41.65  Aligned_cols=109  Identities=21%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             CCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHH-
Q ss_conf             1101166662789989999887188644566666789999999998788674211776788879983024457644443-
Q gi|254780673|r  187 ERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQH-  265 (467)
Q Consensus       187 ~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~H-  265 (467)
                      ..++..- +|...++++.|.+++|.|..+. +..-=+.++.|.+.+-+.         ..+|+|+-...-.+...|..| 
T Consensus        42 ~~~~~~e-~E~~A~~~~~Gas~aG~r~~t~-ts~~Gl~l~~e~l~~a~~---------~~~p~Vi~~~~r~g~~~~~~~~  110 (160)
T cd07034          42 GVVVQAE-SEHAAAEAAIGASAAGARAMTA-TSGPGLNLMAEALYLAAG---------AELPLVIVVAQRPGPSTGLPKP  110 (160)
T ss_pred             EEEEEEC-CHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHHHHHHH---------CCCCEEEEEEECCCCCCCCCCC
T ss_conf             3899855-6899999999998639873743-065339888879999984---------7888899997458886545554


Q ss_pred             HHHHHHHHHHHCC--CEEEEEECCHHCCCHHHHHH----HCCCCEEEE
Q ss_conf             3216887632203--13866522100010555654----137834764
Q gi|254780673|r  266 SQCYAAWYSHVPG--LKVVIPYTASDAKGLLKAAI----RDPNPVIFL  307 (467)
Q Consensus       266 s~~~~~~~~~iPg--l~V~~P~~~~d~~~ll~~ai----~~~~Pvi~l  307 (467)
                      .|+ +.+++.--|  +-|+.|+|++|++.+...++    ++..||+.+
T Consensus       111 ~q~-D~~~~~~~g~~~~vl~p~~~qE~~d~~~~A~~lae~~~~Pvi~~  157 (160)
T cd07034         111 DQS-DLMAARYGGHPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVL  157 (160)
T ss_pred             CCH-HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             417-89999967998799937999999999999999999868998995


No 97 
>TIGR00759 aceE 2-oxo-acid dehydrogenase E1 component, homodimeric type; InterPro: IPR004660   Most members of this family are pyruvate dehydrogenase complex, E1 component. It includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogenase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of Escherichia coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. ; GO: 0016491 oxidoreductase activity.
Probab=97.10  E-value=0.011  Score=38.38  Aligned_cols=219  Identities=17%  Similarity=0.240  Sum_probs=133.2

Q ss_pred             CCCEECCCCCHHHHH----HHHHHHHHCC--CCCHHH-HHHH------HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             111011666627899----8999988718--864456-6666------78999999999878867421177678887998
Q gi|254780673|r  186 CERVIDTPITEHGFA----GIGIGASFAG--LKPIVE-FMTF------NFAMQAIDQIINSAAKTRYMSGGQITTSIVFR  252 (467)
Q Consensus       186 ~~R~~d~pi~E~~~~----G~a~G~A~~G--~~Piv~-~~~~------~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r  252 (467)
                      ...++.-||.|.+.+    -.|.-+|..|  +.||=- |+-|      |..+=|-||.-    . =|+-||--.     |
T Consensus       569 ~GQ~L~EGInEaGA~~SWiAAaTSYa~hg~PMIPfYIyYSMFGfQRiGDl~WAAADQ~A----R-GFllGaTAG-----R  638 (905)
T TIGR00759       569 DGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLCWAAADQRA----R-GFLLGATAG-----R  638 (905)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH----C-CCEECCCCC-----C
T ss_conf             68541310556767777999864565548765415773027640157789998886532----0-000023424-----3


Q ss_pred             EECCCCCCCCHHHHHHHHHHHH--HHCCCEEEEEECCHHCCCHHHHHHH---CCCC--EEEECCCCCCCCCCCCCCCCCE
Q ss_conf             3024457644443321688763--2203138665221000105556541---3783--4764021233333453346631
Q gi|254780673|r  253 GPNGAAARVAAQHSQCYAAWYS--HVPGLKVVIPYTASDAKGLLKAAIR---DPNP--VIFLENEILYGSSFEVPMVDDL  325 (467)
Q Consensus       253 ~p~G~~~~~g~~Hs~~~~~~~~--~iPgl~V~~P~~~~d~~~ll~~ai~---~~~P--vi~le~~~ly~~~~~~p~~~~~  325 (467)
                      +   .-.|-|-|| |+-+|+..  .|||++-.=|+.+++..=+|...++   -.++  |.|-  --.++.+..-|..++.
T Consensus       639 T---TL~GEGLQH-~DGhSl~~~~~~Pnc~~YDPaFAyEvAVI~~~Gl~RMy~E~qed~FyY--~Tv~NE~y~~P~mP~~  712 (905)
T TIGR00759       639 T---TLNGEGLQH-EDGHSLVQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEKQEDVFYY--VTVLNENYVQPPMPEG  712 (905)
T ss_pred             C---CCCCCCCCC-CCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE--EEEECCCCCCCCCCCC
T ss_conf             0---003566410-003678897353743101751023367878778973236674422476--6450578887888724


Q ss_pred             -E------------CCCCCEEEEECCC-CCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHHC
Q ss_conf             -2------------1443114443168-745860257888888887531004-675279733006857999999999871
Q gi|254780673|r  326 -V------------IPIGRARIHRQGS-DVTIISFGIGMTYATKAAIELEKN-GIDAELIDLRTIRPMDWQTIFESVKKT  390 (467)
Q Consensus       326 -~------------~p~Gk~~i~~~G~-ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid~r~l~Pld~~~i~~sv~kt  390 (467)
                       .            ..|-+.. ...++ .+=|++.|..+.++++||+.|+++ ||..+|..+-|-+=|..|.  ..|++.
T Consensus       713 lsh~~~~~gi~kG~Yrf~~~~-~~~~~~~vQLLgSG~i~r~v~~Aa~lLa~DyGV~sDvwSvtSf~ELaRdg--~dv~R~  789 (905)
T TIGR00759       713 LSHEEAEEGILKGLYRFETAT-EEKAKGRVQLLGSGAIMREVIEAAELLAADYGVASDVWSVTSFTELARDG--HDVERW  789 (905)
T ss_pred             CCHHHHHHHHHHHHHHHCCCH-HCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH--HHHHHH
T ss_conf             353442677774034410000-10478713675245689999999999875178314552058756765678--999886


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf             9899995788767678999999999677642898299717778
Q gi|254780673|r  391 GRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV  433 (467)
Q Consensus       391 ~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~  433 (467)
                      +.|==-|+- .    -++|+..|.+.     ++|=..|++-|-
T Consensus       790 nlLHP~e~~-~----vsyVA~~L~~~-----~aPGv~iA~tDY  822 (905)
T TIGR00759       790 NLLHPTETP-R----VSYVAQVLNEA-----DAPGVVIASTDY  822 (905)
T ss_pred             HCCCCCCCC-C----CCHHHHHHHCC-----CCCCEEEEECCH
T ss_conf             425878888-7----64898974127-----998069985221


No 98 
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.09  E-value=0.00095  Score=45.84  Aligned_cols=47  Identities=26%  Similarity=0.184  Sum_probs=39.2

Q ss_pred             EEEEE-EECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf             78987-741789762589859999537533343177786898998237
Q gi|254780673|r   17 GNIAK-WKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPN   63 (467)
Q Consensus        17 G~i~~-W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~e   63 (467)
                      |.|.. -+.++|+.|+.||.++.||++|++.++.||.+|+|.++--..
T Consensus        29 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~~N~~l   76 (96)
T cd06848          29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEAL   76 (96)
T ss_pred             CCEEEEECCCCCCCCCCCCEEEEEEECCEEEEEECCCCEEEEEEHHHH
T ss_conf             998999917999701389859999963357887377166999837965


No 99 
>KOG0238 consensus
Probab=97.04  E-value=0.001  Score=45.69  Aligned_cols=12  Identities=17%  Similarity=0.271  Sum_probs=4.9

Q ss_pred             EEEHHHHHHHHH
Q ss_conf             860257888888
Q gi|254780673|r  343 IISFGIGMTYAT  354 (467)
Q Consensus       343 ii~~G~~~~~a~  354 (467)
                      +|.||..-..|+
T Consensus       386 lvvwg~dR~~Al  397 (670)
T KOG0238         386 LVVWGKDREEAL  397 (670)
T ss_pred             EEEECCCHHHHH
T ss_conf             667648789999


No 100
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=96.98  E-value=0.01  Score=38.55  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             CCCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEE
Q ss_conf             881157898774178976258985999953753334
Q gi|254780673|r   12 PTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVME   47 (467)
Q Consensus        12 esm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~E   47 (467)
                      |+-.+|+|.++++++||.|..|++|+.|+++.....
T Consensus        49 ~s~~~G~l~ki~~~eGd~v~VG~~ia~I~~~~~~~~   84 (406)
T PRK05704         49 PAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAAGA   84 (406)
T ss_pred             CCCCCEEEEEEEECCCCEECCCCEEEEEECCCCCCC
T ss_conf             488898999983089899668998999826887666


No 101
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=96.93  E-value=0.0037  Score=41.68  Aligned_cols=36  Identities=22%  Similarity=0.191  Sum_probs=30.7

Q ss_pred             CEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             3334317778689899823788513269758999437
Q gi|254780673|r   44 AVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        44 at~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      -..++-+..+|.|.++.+++| +.|.-|++|+.|+..
T Consensus        60 ~~~~l~~~VsG~v~~~~v~~G-d~VkkGq~La~LD~~   95 (385)
T PRK09859         60 EVAEIRPQVGGIIIKRNFIEG-DKVNQGDSLYQIDPA   95 (385)
T ss_pred             EEEEEEEECCEEEEEEECCCC-CEEECCCEEEEECCH
T ss_conf             899998145629999983899-988489889982847


No 102
>PRK13380 glycine cleavage system protein H; Provisional
Probab=96.90  E-value=0.0012  Score=45.09  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=36.5

Q ss_pred             ECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf             4178976258985999953753334317778689899823
Q gi|254780673|r   23 KKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCP   62 (467)
Q Consensus        23 ~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~   62 (467)
                      +.++|+.|++||.++.||+.|++.++.||.+|+|.++--.
T Consensus        45 lp~~g~~v~~g~~~~~iEs~K~~~~i~sPvsG~VvevN~~   84 (132)
T PRK13380         45 LPELGTKVEKGKEVATLESVKAASPVPMPLDGEVVEVNDA   84 (132)
T ss_pred             CCCCCCEEECCCEEEEEEECCCCCCCCCCCCCEEEEECHH
T ss_conf             8999987517988999997340011127725258885343


No 103
>PRK01202 glycine cleavage system protein H; Provisional
Probab=96.83  E-value=0.0016  Score=44.20  Aligned_cols=46  Identities=26%  Similarity=0.234  Sum_probs=38.6

Q ss_pred             EEEEEE-ECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf             789877-4178976258985999953753334317778689899823
Q gi|254780673|r   17 GNIAKW-KKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCP   62 (467)
Q Consensus        17 G~i~~W-~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~   62 (467)
                      |.|+.- +.++|+.|++||+++.||+.|++.++.||.+|+|.++--.
T Consensus        37 G~i~~v~lp~~G~~v~~g~~~~~vEs~K~~~~i~sPvsG~Vv~vN~~   83 (127)
T PRK01202         37 GDIVFVELPEVGDTVKAGESFGVVESVKAASDVYAPVSGEVVEVNEA   83 (127)
T ss_pred             CCEEEEECCCCCCEEECCCEEEEEEECCEECCCCCCCCEEEEEECHH
T ss_conf             98899984899988717987899997460211128852089986465


No 104
>pfam01597 GCV_H Glycine cleavage H-protein. This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
Probab=96.81  E-value=0.0017  Score=44.07  Aligned_cols=46  Identities=24%  Similarity=0.225  Sum_probs=38.7

Q ss_pred             EEEEEE-ECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf             789877-4178976258985999953753334317778689899823
Q gi|254780673|r   17 GNIAKW-KKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCP   62 (467)
Q Consensus        17 G~i~~W-~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~   62 (467)
                      |+|+.. +.++|+.|+.||.+++||+.|++.++.||.+|+|.++--.
T Consensus        31 G~i~~v~lp~~g~~v~~g~~~~~iEs~K~v~~i~sPisG~Vv~vN~~   77 (122)
T pfam01597        31 GDLVFVELPEVGTKVKKGESLGAVESVKAASEVYAPVSGEVVEVNEK   77 (122)
T ss_pred             CCEEEEECCCCCCEEECCCEEEEEEECCCCCCEECCCCEEEEEEHHH
T ss_conf             99899988999998516988899997365641436634279987553


No 105
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.71  E-value=0.0019  Score=43.68  Aligned_cols=44  Identities=25%  Similarity=0.231  Sum_probs=37.8

Q ss_pred             EEEEE-EECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf             78987-741789762589859999537533343177786898998
Q gi|254780673|r   17 GNIAK-WKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL   60 (467)
Q Consensus        17 G~i~~-W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~il   60 (467)
                      |.|+- =+.++|+.|++||.++.||+=|+..+|.||.+|.|.++.
T Consensus        39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN   83 (131)
T COG0509          39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN   83 (131)
T ss_pred             CCEEEEECCCCCCEECCCCEEEEEEEEEEECCCCCCCCEEEEEEC
T ss_conf             889999868998711179758999851032025278851699865


No 106
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.69  E-value=0.011  Score=38.31  Aligned_cols=18  Identities=17%  Similarity=0.241  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHCCCCCEE
Q ss_conf             012235544311365069
Q gi|254780673|r  144 EALRDAIAEEMRRDKDVF  161 (467)
Q Consensus       144 ea~~~a~~e~m~~d~~~~  161 (467)
                      |.+-.++.+++...-+.+
T Consensus       109 eriA~~l~~~l~~~aD~~  126 (316)
T cd06252         109 EMIAHYLTTELLPRADYV  126 (316)
T ss_pred             HHHHHHHHHHHHHHCCEE
T ss_conf             999999998557529899


No 107
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein; InterPro: IPR001249   The proteins in this family are a component of the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC) and are involved in the first step in long-chain fatty acid synthesis. In plants this is usually located in the chloroplast. In the first step, biotin carboxylase catalyses the carboxylation of the carrier protein to form an intermediate. Next, the transcarboxylase complex transfers the carboxyl group from the intermediate to acetyl-CoA forming malonyl-CoA. This protein functions in the transfer of CO_2 from one site to another, the biotin binding site locates to the C-terminal of this protein. The biotin is specifically attached to a lysine residue in the sequence AMKM.    The structure of the C-terminal domain of the biotin carboxyl carrier (BCC) protein was shown to be a flattened beta-barrel structure comprising two four-stranded beta sheets interrupted by a structural loop forming a thumb structure. The biotinyl-lysine is located on a tight beta-turn on the opposite end of the molecule. The thumb structure has been shown to attached biotin, thus stabilising the structure. ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=96.63  E-value=0.0019  Score=43.78  Aligned_cols=58  Identities=31%  Similarity=0.355  Sum_probs=53.3

Q ss_pred             EEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf             87741789762589859999537533343177786898998237885132697589994
Q gi|254780673|r   20 AKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAIL   78 (467)
Q Consensus        20 ~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~   78 (467)
                      +.-.++.||.|+.||.+|-+|.-|...++++...|.+.+++++.| +-|.-|+++..+.
T Consensus       101 ~~p~~~~g~~~~~g~~~c~~ea~k~~n~~e~~~~g~~~~~~~~~g-~~~e~g~~l~~~~  158 (159)
T TIGR00531       101 AKPFVEVGDKVNKGDGVCIVEAMKLMNEIEAEVAGEVVEILVEDG-QPVEYGEPLILIE  158 (159)
T ss_pred             CCCEEEECCEECCCCEEEHHHHHHHHHHHCCCCCCEEEEEEECCC-CCCCCCCEEEEEE
T ss_conf             664021055002463320124555654420024653789974288-5010386246761


No 108
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=96.61  E-value=0.016  Score=37.31  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=25.5

Q ss_pred             CEEEEECCCCCEEEEEEE-CCCCCCCCCCCEEEEEEC
Q ss_conf             333431777868989982-378851326975899943
Q gi|254780673|r   44 AVMEVESIDEGILGKILC-PNGTKNVKVNTPIAAILQ   79 (467)
Q Consensus        44 at~EV~A~~~G~i~~ilv-~eG~e~V~VG~~ia~i~~   79 (467)
                      -+..|.+-.+|.|.++.+ ..| +.|.-|++|+.|-.
T Consensus       120 ~~~~v~~r~~G~Ie~L~v~~~G-~~V~kGq~L~~lYS  155 (407)
T PRK09783        120 QYAIVQARAAGFIDKVYPLTVG-DKVQKGTPLLDLTI  155 (407)
T ss_pred             CEEEEEECCCCEEEEEEECCCC-CEECCCCEEEEEEC
T ss_conf             3289971035268898742578-78738978899938


No 109
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.22  E-value=0.018  Score=36.95  Aligned_cols=56  Identities=29%  Similarity=0.363  Sum_probs=38.1

Q ss_pred             EEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCC
Q ss_conf             87741789762589859999537533343177786898998237885132697589994377
Q gi|254780673|r   20 AKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEG   81 (467)
Q Consensus        20 ~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~eg   81 (467)
                      -.|.++.||.|++||+|..|..    ..|.||.+|+|+- ++.+|.+ |+.|..|+-|+--+
T Consensus       175 ~~~~~~IGd~V~kG~vig~v~~----~pV~A~i~GilRG-lirdG~~-V~~G~Ki~dIDPR~  230 (256)
T TIGR03309       175 VTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLT-VTEGLKIGDVDPRG  230 (256)
T ss_pred             EECHHHCCCEEECCCEEEEECC----EEEEEECCCEEEE-EECCCCC-CCCCCEEEEECCCC
T ss_conf             8541441896867968999899----8898765848972-4128978-67998899877998


No 110
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=96.21  E-value=0.022  Score=36.25  Aligned_cols=32  Identities=22%  Similarity=0.312  Sum_probs=28.4

Q ss_pred             CCCCEEEEEEEECCCCCEECCCCEEEEEECCC
Q ss_conf             88115789877417897625898599995375
Q gi|254780673|r   12 PTMTEGNIAKWKKNEGDLIKQGDIIYEVETDK   43 (467)
Q Consensus        12 esm~eG~i~~W~vk~GD~V~~gd~l~eiETDK   43 (467)
                      |+-.+|+|.++++++||.|..|++|++|+++-
T Consensus       104 eSp~~G~l~kIlv~eGd~V~VG~~la~I~~~~  135 (430)
T PTZ00144        104 NSKFSGVLSKIFAEVGDTVLVGKPLCEIDTSG  135 (430)
T ss_pred             CCCCCEEEEEEEECCCCEEECCCEEEEEECCC
T ss_conf             57789799998637999894698699996687


No 111
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=96.02  E-value=0.0059  Score=40.28  Aligned_cols=43  Identities=30%  Similarity=0.438  Sum_probs=35.5

Q ss_pred             EEEEEEECCCCCEECCCCEEEEEECCCCEEE--EECCCCCEEEEEEECCC
Q ss_conf             7898774178976258985999953753334--31777868989982378
Q gi|254780673|r   17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVME--VESIDEGILGKILCPNG   64 (467)
Q Consensus        17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~E--V~A~~~G~i~~ilv~eG   64 (467)
                      |..-+.+||+||.|+.||+|++   ||...+  +.||.+|+|.+|.  -|
T Consensus        39 gl~pkl~VkeGD~V~~Gq~Lf~---dK~~~~v~~~SPvSG~V~~I~--rG   83 (448)
T PRK05352         39 GLKPTMKVKEGDKVKKGQPLFE---DKKNPGVKFTAPASGTVSAIN--RG   83 (448)
T ss_pred             CCCCCEEECCCCEECCCCEEEE---CCCCCCEEEECCCCEEEEEEE--CC
T ss_conf             9998568557999747985565---389896269688982995220--58


No 112
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.02  E-value=0.15  Score=30.49  Aligned_cols=306  Identities=16%  Similarity=0.164  Sum_probs=156.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC----CCCCCCC----C----CCCCCHHHHCCCCCEECCCCCHHHH
Q ss_conf             00000000000001223554431136506999324----3445886----6----5323647540811101166662789
Q gi|254780673|r  132 FAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEE----VAEYQGA----Y----KVTQGLLQEFGCERVIDTPITEHGF  199 (467)
Q Consensus       132 ~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~ged----v~~~~g~----f----~~t~gl~~~fg~~R~~d~pi~E~~~  199 (467)
                      .......-+|=-|||-+-+....++|...   |.+    |..|.|.    |    .-.+.++++.  +=+|--++.|.-.
T Consensus        21 ~~~~G~v~ltG~QALVRl~l~Q~~~D~~~---GlnTagfvSGYrGSPLgg~D~~l~~a~~~L~~~--~i~f~pg~NEdLa   95 (1155)
T PRK09193         21 TLERGRVFLSGIQALVRLPLLQRERDRAA---GLNTAGFISGYRGSPLGGLDQELWRAKKHLAAH--DIVFQPGLNEDLA   95 (1155)
T ss_pred             CCCCCCEEEEHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCEECCCCCHHHH
T ss_conf             04678788646289999999999899976---998450305799998207899999987355551--8775576578999


Q ss_pred             HHHHHHHHHCCCCCHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf             9899998871886445666-----667---89999999998788674211776788879983024457644443321688
Q gi|254780673|r  200 AGIGIGASFAGLKPIVEFM-----TFN---FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAA  271 (467)
Q Consensus       200 ~G~a~G~A~~G~~Piv~~~-----~~~---f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~  271 (467)
                      ...--|--+.++.|=..+-     .+.   =.-|+.|-+.|--     +.|..-.-.++.-.-.-.+......-+||-.+
T Consensus        96 ATavwGsQq~~~~~~~~~DGVfg~WYGKgPGvDRsgDalrHaN-----~~Gts~~GGvl~~~GDDh~~kSSt~~hqSe~~  170 (1155)
T PRK09193         96 ATAVWGSQQVNLFPGAKYDGVFGMWYGKGPGVDRSGDVFRHAN-----AAGTSPHGGVLALAGDDHAAKSSTLPHQSEHA  170 (1155)
T ss_pred             HHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHH-----CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             9998733335668998645278983067788643165876422-----13789989989998259996116772243999


Q ss_pred             HHHHHCCCEEEEEECCHHCCCH--HHHHH-----------------------H-CCC-CEEEECC------CCCCCCCCC
Q ss_conf             7632203138665221000105--55654-----------------------1-378-3476402------123333345
Q gi|254780673|r  272 WYSHVPGLKVVIPYTASDAKGL--LKAAI-----------------------R-DPN-PVIFLEN------EILYGSSFE  318 (467)
Q Consensus       272 ~~~~iPgl~V~~P~~~~d~~~l--l~~ai-----------------------~-~~~-Pvi~le~------~~ly~~~~~  318 (467)
                       |.+. +|-|++|++.+|...+  +-.++                       . +++ +.+.+..      ..+.-+-.+
T Consensus       171 -~~~~-~~Pvl~Pa~vqe~ld~Gl~g~alSR~sG~Wvg~K~v~~~ve~s~~v~~~~~~~~~~~P~~~~~p~~gl~~r~~d  248 (1155)
T PRK09193        171 -FAAA-GMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPD  248 (1155)
T ss_pred             -HHHC-CCCEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -9874-89745799989999989999998866182330566400013135896575435666986667899870014899


Q ss_pred             CCCC-----CCEEC----------CCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHC-----CCCCEEEEECCCCCCC
Q ss_conf             3346-----63121----------44311444316874586025788888888753100-----4675279733006857
Q gi|254780673|r  319 VPMV-----DDLVI----------PIGRARIHRQGSDVTIISFGIGMTYATKAAIELEK-----NGIDAELIDLRTIRPM  378 (467)
Q Consensus       319 ~p~~-----~~~~~----------p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~-----~gi~~~vid~r~l~Pl  378 (467)
                      .|..     -++.+          +|.+..+-.....+-||+.|.......+|-+.|--     +.+...+.-+.-.+||
T Consensus       249 ~~~~~e~rl~~~kl~aa~afaraN~ld~~~~~~~~~r~GIva~Gka~~Dv~~Al~~LGi~~~~~~~~gi~~~Kvgm~wPL  328 (1155)
T PRK09193        249 PPLAQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVTAGKSYLDVRQALRDLGLDEETAARLGIRLYKVGMVWPL  328 (1155)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCC
T ss_conf             82899999999999999999986788745337999847999558249999999998289855687548469860578767


Q ss_pred             CHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEECCCCC---C-CCCCHHHHHHCCCCHHHHH
Q ss_conf             99999999987198999957887676789999999996776428-98299717778---8-8889667656089989999
Q gi|254780673|r  379 DWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLD-APILTITGRDV---P-MPYAANLEKLALPNVDEII  453 (467)
Q Consensus       379 d~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~-~p~~ri~~~d~---p-~P~~~~le~~~~p~~~~I~  453 (467)
                      |-+.|.+-++--..++||||-.      +-|-..|.+..|+.-+ ..|+.++-.|-   | +|..      .-.++..|.
T Consensus       329 e~~~~~~Fa~gl~eilVVEEKr------~~iE~qik~~Ly~~~~~~rp~v~GK~d~~G~~l~p~~------geL~~~~ia  396 (1155)
T PRK09193        329 EPQGVRAFAEGLDEILVVEEKR------QIIEYQLKEELYNWPDDVRPRVVGKFDEQGNWLLPAH------GELSPAIIA  396 (1155)
T ss_pred             CHHHHHHHHHCCCEEEEEECCH------HHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCC------CCCCHHHHH
T ss_conf             8799999984578499995045------7799999999706876779736612789999446866------772999999


Q ss_pred             HHHHHHHC
Q ss_conf             99999850
Q gi|254780673|r  454 ESVESICY  461 (467)
Q Consensus       454 ~av~~v~~  461 (467)
                      .++-+.+.
T Consensus       397 ~~l~~rl~  404 (1155)
T PRK09193        397 KALARRLL  404 (1155)
T ss_pred             HHHHHHHH
T ss_conf             99999998


No 113
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.97  E-value=0.044  Score=34.19  Aligned_cols=18  Identities=17%  Similarity=0.104  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHCCCCCEEE
Q ss_conf             122355443113650699
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFI  162 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~  162 (467)
                      .+...+.+++..+-+.++
T Consensus        95 riA~~l~~~l~~~aD~~i  112 (287)
T cd06251          95 RIAHLFFTEILSHADYGI  112 (287)
T ss_pred             HHHHHHHHHHHHHCCEEE
T ss_conf             999999999885477999


No 114
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=95.80  E-value=0.029  Score=35.40  Aligned_cols=168  Identities=16%  Similarity=0.164  Sum_probs=84.0

Q ss_pred             HHHCCCCCEECCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE----EEEC
Q ss_conf             75408111011666627899899998871-886445666667899999999987886742117767888799----8302
Q gi|254780673|r  181 LQEFGCERVIDTPITEHGFAGIGIGASFA-GLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF----RGPN  255 (467)
Q Consensus       181 ~~~fg~~R~~d~pi~E~~~~G~a~G~A~~-G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~----r~p~  255 (467)
                      .+++.+.|.+-+ -.|.+.+|+|+|+.++ |.+|+|-.|.- =+..+.+.+...+.+..|      +.|+++    ||--
T Consensus        21 ~~~~~~~~hiia-aNEG~AV~iaaG~~Latgk~p~VymQNS-GLGNavNPL~SL~~~~vY------~IP~llligWRG~p   92 (361)
T TIGR03297        21 TDNNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNS-GLGNAVNPLTSLADTEVY------DIPLLLIVGWRGEP   92 (361)
T ss_pred             HHCCCCCCEEEE-CCCHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHCCCCCCC------CCCCEEEEEECCCC
T ss_conf             744776446640-5826699999999975699747999537-720445159771766640------55617998724789


Q ss_pred             CCCCCCCHHHHHHH---HHHHH--HHCCCEEEEEECCHHC----CCHHHHHHHCCCCEEEECCCCCCCC-CCCCCCCCCE
Q ss_conf             44576444433216---88763--2203138665221000----1055565413783476402123333-3453346631
Q gi|254780673|r  256 GAAARVAAQHSQCY---AAWYS--HVPGLKVVIPYTASDA----KGLLKAAIRDPNPVIFLENEILYGS-SFEVPMVDDL  325 (467)
Q Consensus       256 G~~~~~g~~Hs~~~---~~~~~--~iPgl~V~~P~~~~d~----~~ll~~ai~~~~Pvi~le~~~ly~~-~~~~p~~~~~  325 (467)
                      |  ..+-|||.-.-   ..++.  .||=..+  |.+..++    ..++..+.+...|+.++=.+..... ........++
T Consensus        93 g--~kDEPQH~~qG~iT~~lL~~~~Ipy~il--~~~~~~~~~~i~~ai~~~~~~~~P~allv~k~tf~~~~~~~~~~~~~  168 (361)
T TIGR03297        93 G--VHDEPQHVKQGRITLSLLDALEIPWEVL--STDNDEALAQIERALAHALATSRPYALVVRKGTFASYKLKGEPANPL  168 (361)
T ss_pred             C--CCCCCCHHHCCCHHHHHHHHCCCCEEEC--CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCCCCCC
T ss_conf             9--9886540440420299999769987990--86567899999999999999799789998377433110355555657


Q ss_pred             ECCCCCEE----EEE--CCCCCEEEEHHHHHHHHHHHHHHH
Q ss_conf             21443114----443--168745860257888888887531
Q gi|254780673|r  326 VIPIGRAR----IHR--QGSDVTIISFGIGMTYATKAAIEL  360 (467)
Q Consensus       326 ~~p~Gk~~----i~~--~G~ditii~~G~~~~~a~~aa~~L  360 (467)
                      ...+-+.+    +++  ..+++-|-++|..-.+..+..+..
T Consensus       169 ~~~~~Re~aI~~il~~~~~~~~iVsTTG~~SREL~~~r~~~  209 (361)
T TIGR03297       169 PTLMTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRI  209 (361)
T ss_pred             CCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf             78889999999999837999779977886379999999862


No 115
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=95.76  E-value=0.029  Score=35.43  Aligned_cols=28  Identities=39%  Similarity=0.496  Sum_probs=24.7

Q ss_pred             CCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             78689899823788513269758999437
Q gi|254780673|r   52 DEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        52 ~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      ..|+|.++|+++|| .|.-|+.||.|.++
T Consensus        15 ~~g~l~kw~~~~gd-~v~~gd~~aeietd   42 (464)
T PRK11892         15 EEGTLAKWLKKEGD-KVKSGDVIAEIETD   42 (464)
T ss_pred             CCCCCEEEECCCCC-CCCCCCEEEEEEEC
T ss_conf             57712146446897-52578668997506


No 116
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component; InterPro: IPR011603   2-oxoglutarate dehydrogenase is a key enzyme in the TCA cycle, converting 2-oxoglutarate, coenzyme A and NAD(+) to succinyl-CoA, NADH and carbon dioxide . This activity of this enzyme is tightly regulated and it is a major determinant of the metabolic flux through the TCA cycle. This enzyme is composed of multiple copies of three different subunits: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3) which is often shared with similar enzymes such as pyruvate dehydrogenase . The E2 component forms a large multimeric core which binds the peripheral E1 and E3 subunits. The substrate is transferred between the active sites of the different subunits by a lipoyl moiety, bound to a lysine residue from the E2 polypeptide.   This entry represents the E1 subunit of 2-oxoglutarate dehydrogenase. It catalyses the decarboxylation of this compound in a thiamine pyrophosphate-dependent manner, transferring the resultant succinyl group onto the liposyl moiety bound to the E2 subunit. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the E2 component of 2-oxoglutarate dehydrogenase enzyme. ; GO: 0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity, 0030976 thiamin pyrophosphate binding, 0006096 glycolysis.
Probab=95.74  E-value=0.064  Score=33.01  Aligned_cols=282  Identities=17%  Similarity=0.212  Sum_probs=164.7

Q ss_pred             HHHHHHCCCCCEEEEECCCCC--C------------CCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf             554431136506999324344--5------------88665323647540811101166662789989999887188644
Q gi|254780673|r  149 AIAEEMRRDKDVFIMGEEVAE--Y------------QGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPI  214 (467)
Q Consensus       149 a~~e~m~~d~~~~~~gedv~~--~------------~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Pi  214 (467)
                      +....+.....+-+-|||.+.  +            |..|--...|...-+.-++.|.+++|..++|+--|.+...-+-+
T Consensus       629 ~~~~~~~~g~~~~~~g~d~~~g~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~p~~l  708 (990)
T TIGR00239       629 AFATLLDDGTPVRLSGEDSGRGTFFHRHAVLHDQESGAGYTPLSHLHNGKGDFAVWNSPLSEGGVLGFEYGYALTSPETL  708 (990)
T ss_pred             HHHHHHHCCCCEEECCCCCCCCHHHHHHHHEECCCCCCEECCCHHCCCCCCCEEEECCCCCCCCHHHEECCCCCCCCCEE
T ss_conf             44444315743032155332220122111100355663010100002454321210120120000000013323587425


Q ss_pred             H--HHHHHHHH---HHHHHHHHHHH-HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHH-HHHHHHHH------------
Q ss_conf             5--66666789---99999999878-867421177678887998302445764444332-16887632------------
Q gi|254780673|r  215 V--EFMTFNFA---MQAIDQIINSA-AKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQ-CYAAWYSH------------  275 (467)
Q Consensus       215 v--~~~~~~f~---~~a~dqi~n~~-ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~-~~~~~~~~------------  275 (467)
                      +  +.++.||.   ...+||.+... .||..      .+.++...|.| ..|.||.|+. .++.++.-            
T Consensus       709 ~~w~~~~gd~~~~~~~~~d~~~~~g~~~w~~------~~gl~~~lp~g-~~g~gp~~~~~~~~~~l~l~~~~p~~~p~~~  781 (990)
T TIGR00239       709 VLWEAQFGDFANGAQVVIDQFISGGEQKWGR------KCGLVLLLPHG-YEGQGPEHSSGRLERFLQLAAEDPRYFPSEE  781 (990)
T ss_pred             EEEEHHCCCCCCCHHHHHHHHHHHHHHHHHH------HCCEEEECCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             6630000332232132234445201343332------22613551567-6777764204688999987513654476456


Q ss_pred             -------HCCCEEEEEECCHHCCCHHHHH----HH-CCCCEEEECCCCCCCCCCCCCCCC-----CEECCC---CCEEEE
Q ss_conf             -------2031386652210001055565----41-378347640212333334533466-----312144---311444
Q gi|254780673|r  276 -------VPGLKVVIPYTASDAKGLLKAA----IR-DPNPVIFLENEILYGSSFEVPMVD-----DLVIPI---GRARIH  335 (467)
Q Consensus       276 -------iPgl~V~~P~~~~d~~~ll~~a----i~-~~~Pvi~le~~~ly~~~~~~p~~~-----~~~~p~---Gk~~i~  335 (467)
                             --|+.|+.|+++.....+++.-    ++ ...|.+.+-++.+......+...+     .|..-+   ..+...
T Consensus       782 ~~~~~~~dc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pl~~~~~~~ll~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~  861 (990)
T TIGR00239       782 KLQRQHQDCNWQVCVPTTPAQLFHILRRQAKLLLREFRRPLVLLSPKSLLRHPLAVSSLEELSEGGFQPVIGEIEEGGLS  861 (990)
T ss_pred             HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCCC
T ss_conf             77643203530675134247899998888888887641420001216665141024557765235310223212202222


Q ss_pred             ECCCCCE-EEEHHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC---EEEEECCCCCCCHHHHHH
Q ss_conf             3168745-860257888888887531-00467527973300685799999999987198---999957887676789999
Q gi|254780673|r  336 RQGSDVT-IISFGIGMTYATKAAIEL-EKNGIDAELIDLRTIRPMDWQTIFESVKKTGR---LVTVEEGYPQSSVGSTIA  410 (467)
Q Consensus       336 ~~G~dit-ii~~G~~~~~a~~aa~~L-~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~---~i~vee~~~~gg~g~~i~  410 (467)
                      ..-+++. ++-+...+...+...+.- ....-...++.+..+.|+....+.++..+.-+   ++-++|....-|.-....
T Consensus       862 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~p~~~~~~~~~~~~~~~~~~w~~~~p~~~g~w~~~~  941 (990)
T TIGR00239       862 LDPEEVKRLVLCSGKVYYDLSVHEQRRENGDKDLAILRIEQLYPFPHKGLKELLEPYPNLKEIVWCQEEPLNQGAWGYSE  941 (990)
T ss_pred             CCHHHCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf             45113003233336122346666655413641010101122156754789999852145100223112433445310013


Q ss_pred             HHHHHH---HHHHCCCCCEEECCCCCCCCC
Q ss_conf             999996---776428982997177788888
Q gi|254780673|r  411 NQVQRK---VFDYLDAPILTITGRDVPMPY  437 (467)
Q Consensus       411 ~~i~e~---~f~~L~~p~~ri~~~d~p~P~  437 (467)
                      ..+.+-   +-.|-+..++-++.+..-.|.
T Consensus       942 ~~~~~~~~~~d~~~d~~~~~~g~~~~~~~~  971 (990)
T TIGR00239       942 PYLTEVLPEGDKYKDVKLRYAGRPPSGSPA  971 (990)
T ss_pred             CHHHHHCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf             102221245432121022121677555532


No 117
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding 
Probab=95.61  E-value=0.066  Score=32.91  Aligned_cols=13  Identities=15%  Similarity=0.151  Sum_probs=5.5

Q ss_pred             EEECCCCCEEEEE
Q ss_conf             4317778689899
Q gi|254780673|r   47 EVESIDEGILGKI   59 (467)
Q Consensus        47 EV~A~~~G~i~~i   59 (467)
                      .++++..|+=.++
T Consensus         4 ~l~~~~~G~~~~l   16 (359)
T cd06250           4 PLPSPAPGTEREL   16 (359)
T ss_pred             CCCCCCCCCCEEE
T ss_conf             7898889980688


No 118
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family; InterPro: IPR010129   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    Type I secretion is an ABC transporter that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C terminus of the transported protein. This entry represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This entry selects a group of sequences closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.; GO: 0015031 protein transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=95.22  E-value=0.014  Score=37.68  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=30.2

Q ss_pred             EEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCC
Q ss_conf             34317778689899823788513269758999437777
Q gi|254780673|r   46 MEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGET   83 (467)
Q Consensus        46 ~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege~   83 (467)
                      --|-+...|.|.+|+|.|| |.|.-|++|+.|++....
T Consensus        44 k~vQhlegGi~~~I~V~EG-~~V~~Gq~L~~Ld~t~~~   80 (434)
T TIGR01843        44 KVVQHLEGGIVREILVREG-DRVKAGQVLVELDATSVE   80 (434)
T ss_pred             EEEECCCCCEEEEEEECCC-CEECCCCCCEEECHHHHH
T ss_conf             7996686534413552258-642037701354135789


No 119
>TIGR00527 gcvH glycine cleavage system H protein; InterPro: IPR002930   This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex.
Probab=95.20  E-value=0.017  Score=37.03  Aligned_cols=37  Identities=22%  Similarity=0.255  Sum_probs=34.5

Q ss_pred             CCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf             1789762589859999537533343177786898998
Q gi|254780673|r   24 KNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL   60 (467)
Q Consensus        24 vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~il   60 (467)
                      =.+|+.|+.||.+.-||+=|+..|+-||.+|+|.++-
T Consensus        44 PEvG~~v~~~~~~G~vESVKaaSelY~Pv~Gtv~e~N   80 (132)
T TIGR00527        44 PEVGAEVSAGESLGSVESVKAASELYAPVDGTVVEVN   80 (132)
T ss_pred             CCCCCEEECCCCEEEEEEECHHHHCCCCCCCEEEEEC
T ss_conf             8847776238970144100003330389874499853


No 120
>pfam00529 HlyD HlyD family secretion protein.
Probab=95.13  E-value=0.023  Score=36.12  Aligned_cols=35  Identities=29%  Similarity=0.378  Sum_probs=30.2

Q ss_pred             EEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             334317778689899823788513269758999437
Q gi|254780673|r   45 VMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        45 t~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      +++|-+..+|.|.+|+|++| +.|.-|++|+.|++.
T Consensus         2 ~v~V~~~vsG~V~~i~V~~G-d~VkkGq~L~~lD~~   36 (304)
T pfam00529         2 VAEVQPQVSGIVIRILVKEG-DRVKAGDVLVRLDPT   36 (304)
T ss_pred             EEEECCCCCEEEEEEECCCC-CEECCCCEEEEECCH
T ss_conf             66881789879999986890-998899989999868


No 121
>COG3608 Predicted deacylase [General function prediction only]
Probab=95.10  E-value=0.059  Score=33.29  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             0000122355443113650699
Q gi|254780673|r  141 TVREALRDAIAEEMRRDKDVFI  162 (467)
Q Consensus       141 TvRea~~~a~~e~m~~d~~~~~  162 (467)
                      ++.+++-+.+..++..+-++++
T Consensus       120 s~t~ria~~l~r~L~~~aD~Vl  141 (331)
T COG3608         120 SATERIADRLKRLLLPLADIVL  141 (331)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEE
T ss_conf             8799999999986420367899


No 122
>pfam05896 NQRA Na(+)-translocating NADH-quinone reductase subunit A (NQRA). This family consists of several bacterial Na(+)-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na(+)-translocating NADH: ubiquinone oxidoreductase (Na(+)-NQR) generates an electrochemical Na(+) potential driven by aerobic respiration.
Probab=95.03  E-value=0.027  Score=35.70  Aligned_cols=44  Identities=27%  Similarity=0.294  Sum_probs=35.9

Q ss_pred             EEEEEEECCCCCEECCCCEEEEEECCCCEEE--EECCCCCEEEEEEECC
Q ss_conf             7898774178976258985999953753334--3177786898998237
Q gi|254780673|r   17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVME--VESIDEGILGKILCPN   63 (467)
Q Consensus        17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~E--V~A~~~G~i~~ilv~e   63 (467)
                      |..-+.+||+||.|+.||+|++   ||-.-+  +.||.+|+|.+|.-.+
T Consensus        38 glkPkl~VkeGD~Vk~G~pLF~---dK~np~i~f~SPvsG~V~~I~RG~   83 (257)
T pfam05896        38 GMKPKMLVKEGDKVKAGQPLFE---DKKNPGVKFTAPASGTVVAINRGA   83 (257)
T ss_pred             CCCEEEEEECCCEEECCCEEEE---EECCCCCEEECCCCEEEEEECCCC
T ss_conf             8732699834999855875799---736988468567873895010567


No 123
>PRK07051 hypothetical protein; Validated
Probab=94.65  E-value=0.04  Score=34.45  Aligned_cols=26  Identities=15%  Similarity=0.618  Sum_probs=22.4

Q ss_pred             CEEEEEEEECCCCCEECCCCEEEEEE
Q ss_conf             15789877417897625898599995
Q gi|254780673|r   15 TEGNIAKWKKNEGDLIKQGDIIYEVE   40 (467)
Q Consensus        15 ~eG~i~~W~vk~GD~V~~gd~l~eiE   40 (467)
                      ..|+|.+|+++.||.|+.||+|++||
T Consensus        54 ~~G~V~~ilv~~G~~V~~Gq~L~~Ie   79 (80)
T PRK07051         54 VAGRVVRFLVDDGEPVDAGQVLMRIE   79 (80)
T ss_pred             CCCEEEEEEECCCCEECCCCEEEEEE
T ss_conf             98299999956989867999789982


No 124
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.52  E-value=0.062  Score=33.13  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=28.9

Q ss_pred             EEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf             3431777868989982378851326975899943
Q gi|254780673|r   46 MEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ   79 (467)
Q Consensus        46 ~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~   79 (467)
                      .+|.||-.|+|.++++++|+ .|..|++|+++.+
T Consensus         2 ~~V~Apm~G~V~~v~V~~Gd-~V~~G~~l~vlEA   34 (70)
T PRK08225          2 TKVYASMAGNVWKIVVKVGD-TVEEGQDVVILES   34 (70)
T ss_pred             CEEECCCCEEEEEEEECCCC-EECCCCEEEEEEE
T ss_conf             87857899499999928989-9899999999971


No 125
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.24  E-value=0.17  Score=30.13  Aligned_cols=19  Identities=26%  Similarity=0.361  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHCCCCCEEE
Q ss_conf             0122355443113650699
Q gi|254780673|r  144 EALRDAIAEEMRRDKDVFI  162 (467)
Q Consensus       144 ea~~~a~~e~m~~d~~~~~  162 (467)
                      |.+...+.+++...-+.++
T Consensus        93 eriA~~l~~~l~~~aD~~I  111 (288)
T cd06254          93 ERIAYFLTEEVIDKADFLI  111 (288)
T ss_pred             HHHHHHHHHHHHHHCCEEE
T ss_conf             9999999998886598999


No 126
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=94.16  E-value=0.24  Score=28.96  Aligned_cols=47  Identities=19%  Similarity=0.319  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC
Q ss_conf             012235544311365-06999324344588665323647540811101166
Q gi|254780673|r  144 EALRDAIAEEMRRDK-DVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP  193 (467)
Q Consensus       144 ea~~~a~~e~m~~d~-~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p  193 (467)
                      +++.++... +.+-+ -+++.|..+.. .++...-..|.+++|- -|+.|+
T Consensus       204 ~~i~~a~~~-L~~AkrPvIi~G~G~~~-~~a~~~l~~lae~l~i-PV~tt~  251 (572)
T PRK09259        204 DAVDRAIDL-LKKAKRPLIILGKGAAY-AQADEQIREFVESTGI-PFLPMS  251 (572)
T ss_pred             HHHHHHHHH-HHCCCCEEEEECCCCCH-HHHHHHHHHHHHHHCC-CEEECC
T ss_conf             999999999-97279809998878145-5489999999997399-767534


No 127
>pfam03894 XFP D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This family is distantly related to transketolases e.g. pfam02779.
Probab=93.81  E-value=0.18  Score=29.87  Aligned_cols=148  Identities=16%  Similarity=0.213  Sum_probs=88.2

Q ss_pred             HHHHHHHHHCCCCC-EEEEECCC-C--CCCCCCCCCCCHH-HHC---------CCCCEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf             22355443113650-69993243-4--4588665323647-540---------811101166662789989999887188
Q gi|254780673|r  146 LRDAIAEEMRRDKD-VFIMGEEV-A--EYQGAYKVTQGLL-QEF---------GCERVIDTPITEHGFAGIGIGASFAGL  211 (467)
Q Consensus       146 ~~~a~~e~m~~d~~-~~~~gedv-~--~~~g~f~~t~gl~-~~f---------g~~R~~d~pi~E~~~~G~a~G~A~~G~  211 (467)
                      +.+=+++.++.||+ .=+||-|= +  ..+.+|.+|+.-. ...         .+.+.+..-+||+..-|..-|+.+.|.
T Consensus         4 lg~~l~dv~~~Np~~fRvf~PDEt~SNrL~av~e~t~r~w~~~~~~~~~~~~~~~~GrV~e~LSEh~~eG~leGY~LtGr   83 (179)
T pfam03894         4 LGKYLRDVVKLNDTNFRIFGPDETMSNRLWAVFEVTKRQWMMEILPPNDEELSADGGRVDEQLSEHLCEGWLEGYLLTGR   83 (179)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             78999999996875463148872100010899987576101244787753326788504566239999999998875077


Q ss_pred             CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCCCEEEEEECCCCCC---CCHHHHHHH---HHHHHHH-C
Q ss_conf             6445-6666678999999999878867421177------67888799830244576---444433216---8876322-0
Q gi|254780673|r  212 KPIV-EFMTFNFAMQAIDQIINSAAKTRYMSGG------QITTSIVFRGPNGAAAR---VAAQHSQCY---AAWYSHV-P  277 (467)
Q Consensus       212 ~Piv-~~~~~~f~~~a~dqi~n~~ak~~~~~gg------~~~~p~v~r~p~G~~~~---~g~~Hs~~~---~~~~~~i-P  277 (467)
                      +-+. .|--  | .+-+|-.+|+-+||.-++..      -.+++++.-   ...|+   .|.+| |+.   +.++.-- .
T Consensus        84 hglf~SYEA--F-~~iv~sM~~Q~~Kwl~~~~e~~wR~~~~Sln~l~T---S~~WrqdhNg~SH-QdPgf~~~~~~k~~~  156 (179)
T pfam03894        84 HGIFASYEA--F-LHIVDSMLNQHAKWLKATREIPWRKDISSLNYLTS---STVWRQDHNGFSH-QDPGFLTVLLNKKPD  156 (179)
T ss_pred             CCCEEEHHH--H-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEH---HHHHCCCCCCCCC-CCCHHHHHHHHCCCC
T ss_conf             665310999--9-99999999999999999773778888753322000---0233146687766-796299999853888


Q ss_pred             CCEEEEEECCHHCCCHHHHHHHC
Q ss_conf             31386652210001055565413
Q gi|254780673|r  278 GLKVVIPYTASDAKGLLKAAIRD  300 (467)
Q Consensus       278 gl~V~~P~~~~d~~~ll~~ai~~  300 (467)
                      -.+|..|.|++-+-..+..++|+
T Consensus       157 ~~RvylP~DaN~lLa~~~~clrS  179 (179)
T pfam03894       157 VVRVYLPPDANTLLAVFDRCLQS  179 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             05788899705499999999749


No 128
>PRK03598 hypothetical protein; Provisional
Probab=93.49  E-value=0.17  Score=29.98  Aligned_cols=30  Identities=27%  Similarity=0.498  Sum_probs=26.8

Q ss_pred             CEEEEEEEECCCCCEECCCCEEEEEECCCC
Q ss_conf             157898774178976258985999953753
Q gi|254780673|r   15 TEGNIAKWKKNEGDLIKQGDIIYEVETDKA   44 (467)
Q Consensus        15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDKa   44 (467)
                      ..|+|.+.+|++||.|++||+|++|+++..
T Consensus        50 v~G~V~~v~V~eGd~Vk~Gq~La~LD~~~~   79 (331)
T PRK03598         50 VGGRLASLAVDEGDAVKAGQVLGELDHAPY   79 (331)
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEECCHHH
T ss_conf             775999998689798779988999880899


No 129
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=93.47  E-value=0.11  Score=31.38  Aligned_cols=33  Identities=6%  Similarity=0.095  Sum_probs=28.9

Q ss_pred             EEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf             3431777868989982378851326975899943
Q gi|254780673|r   46 MEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ   79 (467)
Q Consensus        46 ~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~   79 (467)
                      -+|.||-.|+|.++++++|| .|..|++|+++.+
T Consensus         3 e~V~Apm~G~V~~v~V~~Gd-~V~~Gd~l~vlEA   35 (71)
T PRK05889          3 EDVRAEIVASVLEVVVNEGD-QIGEGDTLVLLES   35 (71)
T ss_pred             CCCCCCCCEEEEEEEECCCC-EECCCCEEEEEEH
T ss_conf             53148998489999979999-9889999999982


No 130
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=93.34  E-value=0.12  Score=31.14  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=28.8

Q ss_pred             EEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             4317778689899823788513269758999437
Q gi|254780673|r   47 EVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        47 EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      .+.||..|++.++++++|+ .|..|++++++...
T Consensus         1 ~i~ap~~G~v~~~~V~~Gd-~V~~G~~l~~iE~m   33 (67)
T cd06850           1 EVTAPMPGTVVKVLVKEGD-KVEAGQPLAVLEAM   33 (67)
T ss_pred             CEECCCCEEEEEEEECCCC-EECCCCEEEEEEEC
T ss_conf             9108798899999957999-99789999999936


No 131
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=93.29  E-value=0.13  Score=30.85  Aligned_cols=34  Identities=26%  Similarity=0.195  Sum_probs=30.3

Q ss_pred             EEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf             33431777868989982378851326975899943
Q gi|254780673|r   45 VMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ   79 (467)
Q Consensus        45 t~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~   79 (467)
                      -..|.||-.|++-+++|++| |.|..|+++|+|..
T Consensus        70 ~~~V~SPm~Gtv~~~~V~vG-d~V~~Gq~l~IiEA  103 (140)
T COG0511          70 GTQVTSPMVGTVYKPFVEVG-DTVKAGQTLAIIEA  103 (140)
T ss_pred             CCEEECCCCEEEEEEEECCC-CEECCCCEEEEEEE
T ss_conf             86674787618999876579-99758999999982


No 132
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=93.27  E-value=0.7  Score=25.72  Aligned_cols=110  Identities=25%  Similarity=0.228  Sum_probs=58.2

Q ss_pred             CEECCCCCHHHHHHHHHHHHHCC-CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCCCCCCCHH
Q ss_conf             10116666278998999988718-86445666-66789999999998788674211776788879983-02445764444
Q gi|254780673|r  188 RVIDTPITEHGFAGIGIGASFAG-LKPIVEFM-TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG-PNGAAARVAAQ  264 (467)
Q Consensus       188 R~~d~pi~E~~~~G~a~G~A~~G-~~Piv~~~-~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~-p~G~~~~~g~~  264 (467)
                      ...++-.+=..-++.|.|++++. -+.++.++ ..+|.+-++..++|-+.+         +.++++.. -++.++--|.|
T Consensus        45 ~~~~~~~~mG~~~~~A~G~k~a~p~~~Vv~~~GDG~~~~~G~~~l~~av~~---------~~~it~iv~nN~~ygmTggQ  115 (178)
T cd02008          45 NAIDTCTCMGASIGVAIGMAKASEDKKVVAVIGDSTFFHSGILGLINAVYN---------KANITVVILDNRTTAMTGGQ  115 (178)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHH---------CCCEEEEEEECCCCCCCCCC
T ss_conf             000011135773789977898789983799957627766319999999982---------97959999948530013675


Q ss_pred             -------------HHHHHHHHHH--HHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE
Q ss_conf             -------------3321688763--22031386652210001055565413783476
Q gi|254780673|r  265 -------------HSQCYAAWYS--HVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF  306 (467)
Q Consensus       265 -------------Hs~~~~~~~~--~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~  306 (467)
                                   ..-++..+..  .+..+.+..|.+..+++.+|+.|++.++|.++
T Consensus       116 ~sp~~~~~~~~~~~~~d~~~~a~a~G~~~v~~~~~~d~~~~~~~l~~A~~~~G~s~I  172 (178)
T cd02008         116 PHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVI  172 (178)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             589988877787898798999997799999997844199999999999738997899


No 133
>pfam00529 HlyD HlyD family secretion protein.
Probab=93.25  E-value=0.13  Score=30.80  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=29.2

Q ss_pred             CCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEE
Q ss_conf             11578987741789762589859999537533343
Q gi|254780673|r   14 MTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEV   48 (467)
Q Consensus        14 m~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV   48 (467)
                      -..|.|.+++|++||.|++||+|++|++.....++
T Consensus         8 ~vsG~V~~i~V~~Gd~VkkGq~L~~lD~~~~~~~~   42 (304)
T pfam00529         8 QVSGIVIRILVKEGDRVKAGDVLVRLDPTPYQAAL   42 (304)
T ss_pred             CCCEEEEEEECCCCCEECCCCEEEEECCHHHHHHH
T ss_conf             89879999986890998899989999868999999


No 134
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895   The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor.   Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=93.20  E-value=0.41  Score=27.35  Aligned_cols=91  Identities=18%  Similarity=0.300  Sum_probs=69.2

Q ss_pred             CCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEE-EEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             7458602578888888875310046752797330068579999999998719899-995788767678999999999677
Q gi|254780673|r  340 DVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLV-TVEEGYPQSSVGSTIANQVQRKVF  418 (467)
Q Consensus       340 ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i-~vee~~~~gg~g~~i~~~i~e~~f  418 (467)
                      +=-||+.|+.....+|.-+.|..+|=.+-+|.+|-=.||+.+++++++=+|=+.| |.|=.=.-|+.|.=+---|. ++|
T Consensus       266 E~vIi~MGSvaeTieEtvdyL~~kG~KvGllkVrLYRPF~~~~F~~~lP~svK~IAVLDRtKEPGa~GEPLYLDV~-~A~  344 (1194)
T TIGR02176       266 ERVIIAMGSVAETIEETVDYLRSKGEKVGLLKVRLYRPFSAETFLAALPKSVKRIAVLDRTKEPGAAGEPLYLDVR-SAF  344 (1194)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHH-HHH
T ss_conf             3104405856678999999997289327688875127985899998424110122212355688655684488899-886


Q ss_pred             HHC--------CCCCEEECCC
Q ss_conf             642--------8982997177
Q gi|254780673|r  419 DYL--------DAPILTITGR  431 (467)
Q Consensus       419 ~~L--------~~p~~ri~~~  431 (467)
                      ..-        +.-|..||+.
T Consensus       345 ~e~~~~~KCPf~~~P~I~GGR  365 (1194)
T TIGR02176       345 YEMQAEKKCPFESMPVIVGGR  365 (1194)
T ss_pred             HCCCCCCCCCCCCCCEEEEEE
T ss_conf             304001688865678588630


No 135
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.02  E-value=0.34  Score=27.95  Aligned_cols=29  Identities=28%  Similarity=0.479  Sum_probs=12.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             0000000000000012235544311365069
Q gi|254780673|r  131 SFAHAPTSSITVREALRDAIAEEMRRDKDVF  161 (467)
Q Consensus       131 ~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~  161 (467)
                      ..++.+..+.|  +.+...+.+++...-+.+
T Consensus        88 ~FPG~~~Gs~t--eriA~~i~~~l~~~aD~~  116 (293)
T cd06255          88 TFPGNPNGMVT--QQMAHALFEEVRGVADYL  116 (293)
T ss_pred             CCCCCCCCCHH--HHHHHHHHHHHHHHCCEE
T ss_conf             39999999999--999999999888659999


No 136
>PRK06748 hypothetical protein; Validated
Probab=92.94  E-value=0.57  Score=26.35  Aligned_cols=65  Identities=15%  Similarity=0.214  Sum_probs=56.5

Q ss_pred             CEEEEEEEECCCCCEECCCCEEEEEEC-CCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             157898774178976258985999953-753334317778689899823788513269758999437
Q gi|254780673|r   15 TEGNIAKWKKNEGDLIKQGDIIYEVET-DKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        15 ~eG~i~~W~vk~GD~V~~gd~l~eiET-DKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      -.|.+-+.++.+++.|-+=+.|+-|+| |+.-.+|.--.+|.|.-+-+++|+ .|..+++++++.++
T Consensus        12 ~~G~Vekifi~e~syVyEWEkL~~I~~~dg~le~v~vGisG~I~~v~Ve~Gq-~i~~~~lL~~vedD   77 (84)
T PRK06748         12 CYGKVEKLFVTESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQ-AIADQKLLITVRDD   77 (84)
T ss_pred             CCCEEEEEEECCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEECCC-EECCCCEEEEEECC
T ss_conf             6308899998587537864234577506982899998214278898862284-65377389998714


No 137
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=92.80  E-value=0.48  Score=26.89  Aligned_cols=16  Identities=13%  Similarity=0.133  Sum_probs=10.8

Q ss_pred             CHHHHHHHHHHHHCCC
Q ss_conf             9899999999985020
Q gi|254780673|r  448 NVDEIIESVESICYKR  463 (467)
Q Consensus       448 ~~~~I~~av~~v~~~~  463 (467)
                      +.+++-.++++.+..+
T Consensus       513 ~~~eL~~al~~Al~~~  528 (554)
T TIGR03254       513 TPDELKAALNEALASG  528 (554)
T ss_pred             CHHHHHHHHHHHHHCC
T ss_conf             9999999999998279


No 138
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=92.39  E-value=0.14  Score=30.54  Aligned_cols=42  Identities=19%  Similarity=0.214  Sum_probs=37.3

Q ss_pred             EEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf             78987741789762589859999537533343177786898998
Q gi|254780673|r   17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL   60 (467)
Q Consensus        17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~il   60 (467)
                      |.=+.-+||+||.|.+||+|.+=+.  ...-|-||.+|+|.+|.
T Consensus        42 g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~   83 (529)
T COG4656          42 GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE   83 (529)
T ss_pred             CCCCCEEEEECCEEECCCEEECCCC--CEEEEECCCCCEEEEEE
T ss_conf             9863448830888850864203678--44654279873133542


No 139
>PRK12784 hypothetical protein; Provisional
Probab=92.33  E-value=0.79  Score=25.37  Aligned_cols=65  Identities=12%  Similarity=0.175  Sum_probs=56.1

Q ss_pred             CEEEEEEEECCCCCEECCCCEEEEEEC-CCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             157898774178976258985999953-753334317778689899823788513269758999437
Q gi|254780673|r   15 TEGNIAKWKKNEGDLIKQGDIIYEVET-DKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        15 ~eG~i~~W~vk~GD~V~~gd~l~eiET-DKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      -.|++-+.++.+++.|-+=+.|+-|+| |+.-.+|.--.+|.|.-+-+++|+ .|..+++++++.++
T Consensus        12 c~G~Vekifi~e~SyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq-~i~~~tlL~~~edD   77 (84)
T PRK12784         12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQ-QIHTDTLLVRLEDD   77 (84)
T ss_pred             CCCEEEEEEECCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEECCC-EECCCCEEEEEECC
T ss_conf             6318889998587537864234577506982899998201168999862285-43477189998603


No 140
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=91.83  E-value=0.28  Score=28.53  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=29.6

Q ss_pred             EEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf             33431777868989982378851326975899943
Q gi|254780673|r   45 VMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ   79 (467)
Q Consensus        45 t~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~   79 (467)
                      ...|.||-.|+|.++++++|+ .|..|++|++|.+
T Consensus        63 ~~~v~aPm~G~v~~i~v~~Gd-~V~~g~~l~vlEA   96 (132)
T PRK06549         63 ADAIPSPMPGTILKVLVAVGD-QVTENQPLLILEA   96 (132)
T ss_pred             CCEECCCCCEEEEEEEECCCC-EECCCCEEEEEEE
T ss_conf             999808999799999938999-9879998999980


No 141
>pfam04952 AstE_AspA Succinylglutamate desuccinylase / Aspartoacylase family. This family includes Succinylglutamate desuccinylase EC:3.1.-.- that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. The family also include aspartoacylase EC:3.5.1.15 which cleaves acylaspartate into a fatty acid and aspartate. Mutations in human aspartoacylase (ACY-2) lead to Canavan disease. This family is probably structurally related to pfam00246 (Bateman A pers. obs.).
Probab=91.68  E-value=0.78  Score=25.42  Aligned_cols=19  Identities=21%  Similarity=0.371  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHCCCCCEEE
Q ss_conf             0122355443113650699
Q gi|254780673|r  144 EALRDAIAEEMRRDKDVFI  162 (467)
Q Consensus       144 ea~~~a~~e~m~~d~~~~~  162 (467)
                      |.+...+.+.+..+-++++
T Consensus        85 eria~~~~~~~~~~aD~~i  103 (289)
T pfam04952        85 ERIADAFFRALLPRADIVL  103 (289)
T ss_pred             HHHHHHHHHHHHCCCCEEE
T ss_conf             9999999975440577899


No 142
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=91.58  E-value=0.24  Score=29.04  Aligned_cols=31  Identities=23%  Similarity=0.504  Sum_probs=27.0

Q ss_pred             CEEEEEEEECCCCCEECCCCEEEEEECCCCE
Q ss_conf             1578987741789762589859999537533
Q gi|254780673|r   15 TEGNIAKWKKNEGDLIKQGDIIYEVETDKAV   45 (467)
Q Consensus        15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDKat   45 (467)
                      ..|+|.++++++||.|++||+|++|+.....
T Consensus        94 VsG~I~~i~v~~Gd~VkkGqvLa~iD~~~~~  124 (415)
T PRK11556         94 VDGQLMALHFQEGQQVKAGDLLAEIDPSQFK  124 (415)
T ss_pred             EEEEEEEEECCCCCEECCCCEEEEECCHHHH
T ss_conf             5029999985898997899999998835789


No 143
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=91.49  E-value=0.21  Score=29.40  Aligned_cols=30  Identities=27%  Similarity=0.277  Sum_probs=23.3

Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             7778689899823788513269758999437
Q gi|254780673|r   50 SIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        50 A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      +-.+|+|.++++++|+ .|..|++|+.+.+.
T Consensus        10 ~~~eg~I~~~~v~~Gd-~V~~Gd~l~~iEa~   39 (73)
T cd06663          10 HLGDGTVVKWLKKVGD-KVKKGDVLAEIEAM   39 (73)
T ss_pred             CCEEEEEEEEEECCCC-EECCCCEEEEEEEE
T ss_conf             8307999999926999-99799999999950


No 144
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=91.48  E-value=0.26  Score=28.71  Aligned_cols=29  Identities=21%  Similarity=0.306  Sum_probs=20.9

Q ss_pred             CCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             778689899823788513269758999437
Q gi|254780673|r   51 IDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        51 ~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      -.+|+|.++++++| |.|..|++|+.+.++
T Consensus        14 ~~EG~I~~W~~k~G-D~V~~gd~L~eVeTD   42 (404)
T COG0508          14 MTEGTIVEWLKKVG-DKVKEGDVLVEVETD   42 (404)
T ss_pred             CEEEEEEEEEECCC-CEECCCCCEEEEEEC
T ss_conf             13678858972699-863699806999806


No 145
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=91.47  E-value=0.41  Score=27.36  Aligned_cols=31  Identities=19%  Similarity=0.473  Sum_probs=27.0

Q ss_pred             CEEEEEEEECCCCCEECCCCEEEEEECCCCE
Q ss_conf             1578987741789762589859999537533
Q gi|254780673|r   15 TEGNIAKWKKNEGDLIKQGDIIYEVETDKAV   45 (467)
Q Consensus        15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDKat   45 (467)
                      ..|+|.+.+|++||.|++||+|++|+.+--.
T Consensus        57 VsG~V~~V~V~egq~VkkGq~L~~LD~~~~~   87 (348)
T PRK10476         57 VGGRIVELAVTENQAVKKGDLLFRIDPRPYE   87 (348)
T ss_pred             CCEEEEEEEECCCCEECCCCEEEEECCHHHH
T ss_conf             4459999994699986489789997768999


No 146
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=91.36  E-value=0.33  Score=27.98  Aligned_cols=32  Identities=25%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             EEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf             431777868989982378851326975899943
Q gi|254780673|r   47 EVESIDEGILGKILCPNGTKNVKVNTPIAAILQ   79 (467)
Q Consensus        47 EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~   79 (467)
                      .|.||-.|+|.++++++|+ .|..|++++++.+
T Consensus        81 ~v~apmpG~v~~v~v~~Gd-~V~~g~~l~vlEa  112 (148)
T PRK05641         81 VVTAPMPGKILKILVKEGD-QVKTGQGLLILEA  112 (148)
T ss_pred             EEECCCCEEEEEEEECCCC-EECCCCEEEEEEH
T ss_conf             7976999089999968999-9879999999994


No 147
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=91.12  E-value=0.34  Score=27.92  Aligned_cols=32  Identities=16%  Similarity=0.322  Sum_probs=27.6

Q ss_pred             CEEEEEEEECCCCCEECCCCEEEEEECCCCEE
Q ss_conf             15789877417897625898599995375333
Q gi|254780673|r   15 TEGNIAKWKKNEGDLIKQGDIIYEVETDKAVM   46 (467)
Q Consensus        15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~   46 (467)
                      .+|+|.+|++++||.|++||+|++|+++..-.
T Consensus        45 v~G~I~~i~v~~Gd~V~kGqvL~~ld~~~~~~   76 (347)
T PRK11578         45 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAEN   76 (347)
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEECHHHHHH
T ss_conf             77899999989939888999999987499999


No 148
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=90.90  E-value=0.36  Score=27.78  Aligned_cols=40  Identities=28%  Similarity=0.412  Sum_probs=32.9

Q ss_pred             EEECCCCCEECCCCEEEEEECCCCE--EEEECCCCCEEEEEEECC
Q ss_conf             7741789762589859999537533--343177786898998237
Q gi|254780673|r   21 KWKKNEGDLIKQGDIIYEVETDKAV--MEVESIDEGILGKILCPN   63 (467)
Q Consensus        21 ~W~vk~GD~V~~gd~l~eiETDKat--~EV~A~~~G~i~~ilv~e   63 (467)
                      .-+|++||.|+.||+|+|   ||-.  +-+.||.+|+|.+|.-.+
T Consensus        42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~TapvsG~V~aI~RG~   83 (447)
T COG1726          42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE   83 (447)
T ss_pred             CCEECCCCEEECCCEEEE---CCCCCCEEEECCCCCEEEEEECCC
T ss_conf             415334772202653112---156898589456782588864465


No 149
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=90.89  E-value=0.32  Score=28.10  Aligned_cols=150  Identities=12%  Similarity=0.112  Sum_probs=63.3

Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCC---CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             777868989982378851326975899943777721---122223321-2344222332233322233221000000112
Q gi|254780673|r   50 SIDEGILGKILCPNGTKNVKVNTPIAAILQEGETAL---DIDKMLLEK-PDVAISPSSKNTTLVFSNEDNDKVDHQKSKN  125 (467)
Q Consensus        50 A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege~a~---~~~~~~a~~-~~aa~aaa~~~~s~~~~~a~~~a~~~~~a~~  125 (467)
                      +-.+|+|.++++++|| .|..|++|+.+.++-...+   ..+.....- .++...-+....-..- ...+|.+...+.+.
T Consensus        12 ~m~eg~i~~W~~~~Gd-~V~~g~~l~eVeTDKa~~ei~a~~~G~l~~i~~~~G~~v~VG~~ia~i-~~asP~ar~lA~e~   89 (324)
T PRK11856         12 GMTEGEIVEWLVKEGD-TVKKGDPLAEVETDKATVEVESPVAGTLRKILVEEGDVVPVGAPIAVI-VRASPLARKLAREL   89 (324)
T ss_pred             CCCEEEEEEEEECCCC-EECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEECCCCEEEEE-CCCCCHHHHHHHHC
T ss_conf             9517999999908999-978999499998076668980688839989960897995799989994-46782445568772


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHH
Q ss_conf             3333100000000000000122355443113650699932-434458866532364754081110116666278998999
Q gi|254780673|r  126 DIQDSSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGE-EVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGI  204 (467)
Q Consensus       126 ~~~~~~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~ge-dv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~  204 (467)
                      ...-....++......+|.++.+.|.+.+..-|.+..+-+ |+.+       -..+.++....+-.+.-++...++-.|+
T Consensus        90 gidl~~i~gtG~~gr~~r~~ia~~m~~s~~~ip~~~~~~~vd~~~-------l~~~r~~~~~~~~~~~klt~~~~~ikA~  162 (324)
T PRK11856         90 GVDLATVRGTGPGGRGLRKAIAKRMVNSKFNIPHFTLTDEVDATD-------LLALRKSLKKAAVEGGKLTVLAFLVKAV  162 (324)
T ss_pred             CCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEHHH-------HHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             999766778999986258999999887730398299999875799-------9999999765430488768679999999


Q ss_pred             HHHH
Q ss_conf             9887
Q gi|254780673|r  205 GASF  208 (467)
Q Consensus       205 G~A~  208 (467)
                      ..|+
T Consensus       163 ~~AL  166 (324)
T PRK11856        163 ADAL  166 (324)
T ss_pred             HHHH
T ss_conf             9997


No 150
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776    This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=90.82  E-value=0.28  Score=28.56  Aligned_cols=62  Identities=23%  Similarity=0.421  Sum_probs=42.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEEC--CCC-----CCCCC-CCCCCCH--------HHHCCCCCEECCCCCH----HH
Q ss_conf             000000122355443113650699932--434-----45886-6532364--------7540811101166662----78
Q gi|254780673|r  139 SITVREALRDAIAEEMRRDKDVFIMGE--EVA-----EYQGA-YKVTQGL--------LQEFGCERVIDTPITE----HG  198 (467)
Q Consensus       139 ~~TvRea~~~a~~e~m~~d~~~~~~ge--dv~-----~~~g~-f~~t~gl--------~~~fg~~R~~d~pi~E----~~  198 (467)
                      -+++|+|..--+|-+|+.+..+=++-+  +||     -|||| |-+..-|        +.++ .+|+=||||.=    ||
T Consensus         3 Dv~LRDaHQSL~ATRmRteDMLPi~~~LD~vGfwSLEvWGGATFDaC~RFL~EDPW~RLR~l-k~~~pnT~L~MLLRGQN   81 (616)
T TIGR01108         3 DVVLRDAHQSLIATRMRTEDMLPILEKLDDVGFWSLEVWGGATFDACIRFLNEDPWERLREL-KKALPNTKLQMLLRGQN   81 (616)
T ss_pred             EEEECCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHH-HHHCCCCCHHHHHCCCC
T ss_conf             01352067766753057313689998750249556520244105578442488855899999-97357875123420454


Q ss_pred             HHH
Q ss_conf             998
Q gi|254780673|r  199 FAG  201 (467)
Q Consensus       199 ~~G  201 (467)
                      ++|
T Consensus        82 LlG   84 (616)
T TIGR01108        82 LLG   84 (616)
T ss_pred             CCC
T ss_conf             234


No 151
>KOG3373 consensus
Probab=90.72  E-value=0.19  Score=29.79  Aligned_cols=37  Identities=30%  Similarity=0.259  Sum_probs=20.6

Q ss_pred             CCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf             7897625898599995375333431777868989982
Q gi|254780673|r   25 NEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILC   61 (467)
Q Consensus        25 k~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv   61 (467)
                      .+|-.|+++|.+.-+|+=|+.-||-+|.+|.|.+|.-
T Consensus        89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe  125 (172)
T KOG3373          89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINE  125 (172)
T ss_pred             CCCCCCCCCCCEEEEEEHHHHHHHCCCCCCEEEEECC
T ss_conf             8897223676011442013456530767752788245


No 152
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=90.47  E-value=0.32  Score=28.14  Aligned_cols=30  Identities=23%  Similarity=0.385  Sum_probs=25.2

Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             7778689899823788513269758999437
Q gi|254780673|r   50 SIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        50 A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      +..+|+|.++++++|+ .|..|++|+.+.++
T Consensus        11 ~~~eg~i~~w~v~~Gd-~V~~gd~l~~vEt~   40 (74)
T cd06849          11 SMTEGTIVEWLVKEGD-SVEEGDVLAEVETD   40 (74)
T ss_pred             CCCEEEEEEEEECCCC-EECCCCEEEEEECC
T ss_conf             8506999999927989-99789999999858


No 153
>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694    emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds. EmrB encodes a highly hydrophobic 56.2-kDa peptide, with 14 potential alpha-helices to span the inner membrane. EmrA encodes a putative 42.7-kDa peptide containing a single hydrophobic domain and a large C-terminal hydrophilic domain.; GO: 0015238 drug transporter activity, 0006855 multidrug transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=90.04  E-value=0.4  Score=27.43  Aligned_cols=35  Identities=14%  Similarity=0.113  Sum_probs=29.8

Q ss_pred             EEEEEC-CCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             334317-778689899823788513269758999437
Q gi|254780673|r   45 VMEVES-IDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        45 t~EV~A-~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      .+.|-| ..+|.|.++.+.++ +.|.-|+.|+.|+..
T Consensus        42 ~~~v~sF~VsG~v~~v~~~d~-d~Vk~GD~Lv~LD~t   77 (379)
T TIGR00998        42 QLQVSSFQVSGSVIEVNVDDT-DYVKQGDVLVRLDPT   77 (379)
T ss_pred             CEEEEEEEEEEEEEEEEECCC-CCCEECCEEEEECCC
T ss_conf             302324657324899974378-842031156676771


No 154
>pfam00364 Biotin_lipoyl Biotin-requiring enzyme. This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the model may not recognize the Glycine cleavage system H proteins.
Probab=89.71  E-value=0.41  Score=27.39  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=18.4

Q ss_pred             CCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             8689899823788513269758999437
Q gi|254780673|r   53 EGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        53 ~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      +|++ ++++++| |.|..|++|+.+.+.
T Consensus        14 ~~~~-~w~v~~G-d~V~~g~~l~~iEt~   39 (73)
T pfam00364        14 EGTA-EWLVKVG-DKVKAGQVLCEVEAM   39 (73)
T ss_pred             ECCE-EEEECCC-CEECCCCEEEEEEEC
T ss_conf             2348-4865898-999289989999966


No 155
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=89.10  E-value=0.61  Score=26.15  Aligned_cols=29  Identities=21%  Similarity=0.511  Sum_probs=25.8

Q ss_pred             CEEEEEEEECCCCCEECCCCEEEEEECCC
Q ss_conf             15789877417897625898599995375
Q gi|254780673|r   15 TEGNIAKWKKNEGDLIKQGDIIYEVETDK   43 (467)
Q Consensus        15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDK   43 (467)
                      ..|+|.++++++||.|++||+|++|+..-
T Consensus        70 v~G~v~~v~v~~Gd~V~kGq~La~lD~~~   98 (385)
T PRK09578         70 VAGIVTARTYEEGQEVKQGAVLFRIDPAP   98 (385)
T ss_pred             CCEEEEEEEECCCCEECCCCEEEEECCHH
T ss_conf             44699999807999873898899985346


No 156
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction.  The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase).  A similar protein is also found in a few bacteria.
Probab=88.83  E-value=1.9  Score=22.74  Aligned_cols=57  Identities=26%  Similarity=0.349  Sum_probs=40.6

Q ss_pred             ECCCCCEECCCCEEEEE-ECCCCEEE--EECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf             41789762589859999-53753334--31777868989982378851326975899943777
Q gi|254780673|r   23 KKNEGDLIKQGDIIYEV-ETDKAVME--VESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE   82 (467)
Q Consensus        23 ~vk~GD~V~~gd~l~ei-ETDKat~E--V~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege   82 (467)
                      .+|+||.|..||+|-+| ||+...--  ||--..|.|..+ +..| + ..+.++++.++.+|.
T Consensus        54 ~v~~Gd~V~~GDi~G~V~E~~~i~HkImvpp~~~G~v~~i-~~~g-~-y~v~~~~~~~~~~g~  113 (369)
T cd01134          54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAG-D-YTVDDVILEVEFDGK  113 (369)
T ss_pred             CCCCCCEECCCCEEEEEECCCCEEEEEECCCCCCEEEEEE-ECCC-C-CEEEEEEEEECCCCC
T ss_conf             2677999627867999855783677786489873799999-1589-8-524656999706898


No 157
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family; InterPro: IPR014315   Members of this protein are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. (strain PCC 7120) is partially characterised as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. which has seven members..
Probab=88.50  E-value=0.18  Score=29.92  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=29.5

Q ss_pred             EEEECCCC-----CEEEEEE-ECCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf             34317778-----6898998-23788513269758999437777211
Q gi|254780673|r   46 MEVESIDE-----GILGKIL-CPNGTKNVKVNTPIAAILQEGETALD   86 (467)
Q Consensus        46 ~EV~A~~~-----G~i~~il-v~eG~e~V~VG~~ia~i~~ege~a~~   86 (467)
                      +.|-+|-+     -.|.+|| |.+|| .|..|++||+|+.-.+-..+
T Consensus        14 ~~v~aP~~Gf~g~~Ri~~LlPV~eGD-~V~~Gq~lA~Ld~~~~r~a~   59 (363)
T TIGR02971        14 VAVAAPSSGFAGTDRIKKLLPVAEGD-RVKAGQVLAELDSRPERRAE   59 (363)
T ss_pred             EEEECCCCCCCCCCHHHHHCCCCCCC-CCCCCCEEEEECCCHHHHHH
T ss_conf             88414788887753155506778887-01157536764570579999


No 158
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family; InterPro: IPR010129   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    Type I secretion is an ABC transporter that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C terminus of the transported protein. This entry represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This entry selects a group of sequences closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.; GO: 0015031 protein transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=88.15  E-value=0.32  Score=28.15  Aligned_cols=35  Identities=20%  Similarity=0.419  Sum_probs=28.9

Q ss_pred             CCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEE
Q ss_conf             81157898774178976258985999953753334
Q gi|254780673|r   13 TMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVME   47 (467)
Q Consensus        13 sm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~E   47 (467)
                      +.+-|.|.+.+|++||.|++||+|+++++=.+--+
T Consensus        48 hlegGi~~~I~V~EG~~V~~Gq~L~~Ld~t~~~A~   82 (434)
T TIGR01843        48 HLEGGIVREILVREGDRVKAGQVLVELDATSVEAD   82 (434)
T ss_pred             CCCCCEEEEEEECCCCEECCCCCCEEECHHHHHHH
T ss_conf             68653441355225864203770135413578999


No 159
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=88.04  E-value=1.6  Score=23.19  Aligned_cols=110  Identities=19%  Similarity=0.153  Sum_probs=60.8

Q ss_pred             CCCCCEECCCC-CH-HHHHHHHHHHHHCC-CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             08111011666-62-78998999988718-86445666-66789999999998788674211776788879983024457
Q gi|254780673|r  184 FGCERVIDTPI-TE-HGFAGIGIGASFAG-LKPIVEFM-TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAA  259 (467)
Q Consensus       184 fg~~R~~d~pi-~E-~~~~G~a~G~A~~G-~~Piv~~~-~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~  259 (467)
                      ..|.+++..+- +- ..-++.|+|++++- -|+++.+. ...|.+..  |-+..+.        +.++|+++..-.-.++
T Consensus        34 ~~~~~~~~~~~~g~mG~~~p~AiGa~~a~p~~~vv~i~GDG~f~~~~--~el~ta~--------~~~l~i~~iv~nN~~~  103 (168)
T cd00568          34 RRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMMTG--QELATAV--------RYGLPVIVVVFNNGGY  103 (168)
T ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECC--HHHHHHH--------HCCCCEEEEEEECCHH
T ss_conf             89995982898753777999999999878998399997797421131--7664565--------3188426999977613


Q ss_pred             CCCHHHH-----------------HHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE
Q ss_conf             6444433-----------------2168876322031386652210001055565413783476
Q gi|254780673|r  260 RVAAQHS-----------------QCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF  306 (467)
Q Consensus       260 ~~g~~Hs-----------------~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~  306 (467)
                        |..+.                 -++..+.... |++.+...++.|.+..|+.+++.+.|+++
T Consensus       104 --~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~el~~al~~a~~~~~p~li  164 (168)
T cd00568         104 --GTIRMHQEAFYGGRVSGTDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALI  164 (168)
T ss_pred             --HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf             --67799998502898765658888778999974-98699989999999999999838997899


No 160
>PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated
Probab=88.02  E-value=2.1  Score=22.39  Aligned_cols=13  Identities=15%  Similarity=0.225  Sum_probs=5.8

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9899999999985
Q gi|254780673|r  448 NVDEIIESVESIC  460 (467)
Q Consensus       448 ~~~~I~~av~~v~  460 (467)
                      +.+++-+++++-.
T Consensus       504 ~~~eL~~al~~a~  516 (548)
T PRK07449        504 TWAELEEALDDAL  516 (548)
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9999999999998


No 161
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=87.89  E-value=0.82  Score=25.25  Aligned_cols=30  Identities=33%  Similarity=0.529  Sum_probs=26.4

Q ss_pred             CEEEEEEEECCCCCEECCCCEEEEEECCCC
Q ss_conf             157898774178976258985999953753
Q gi|254780673|r   15 TEGNIAKWKKNEGDLIKQGDIIYEVETDKA   44 (467)
Q Consensus        15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDKa   44 (467)
                      ..|.|.++++++||.|++||+|++|+..-.
T Consensus        68 VsG~v~~~~v~~Gd~VkkGq~La~LD~~~~   97 (385)
T PRK09859         68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPL   97 (385)
T ss_pred             CCEEEEEEECCCCCEEECCCEEEEECCHHH
T ss_conf             562999998389998848988998284799


No 162
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=87.89  E-value=0.59  Score=26.25  Aligned_cols=47  Identities=15%  Similarity=0.199  Sum_probs=37.9

Q ss_pred             CCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf             811578987741789762589859999537533343177786898998
Q gi|254780673|r   13 TMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL   60 (467)
Q Consensus        13 sm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~il   60 (467)
                      +..-|.-++-+|++||.|..||.|.+-+ .-.+.-|-||.+|+|..|-
T Consensus        48 ~QHiGap~~p~VkvGD~VlkGQ~I~~~~-g~vsapVHAptSGtV~aIe   94 (725)
T PRK05035         48 KQHIGAEGELLVSVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVTAIE   94 (725)
T ss_pred             CCCCCCCCCCCCCCCCEECCCCEEEECC-CCEEEEEECCCCEEEEEEE
T ss_conf             7779987714147899976888745469-8458605679982998750


No 163
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase; InterPro: IPR013466    Proteins in this entry are closely related to characterised examples of thymidine phosphorylase (2.4.2.4 from EC) and pyrimidine nucleoside phosphorylase (2.4.2.2 from EC). Most examples are found in the archaea, but other examples are found in bacteria such as Legionella pneumophila (strain Paris) and Rhodopseudomonas palustris CGA009.; GO: 0009032 thymidine phosphorylase activity.
Probab=87.78  E-value=0.4  Score=27.41  Aligned_cols=70  Identities=21%  Similarity=0.267  Sum_probs=45.2

Q ss_pred             CCCCE-EEEHH-----HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             68745-86025-----7888888887531004675279733006857999999999871989999578876767899999
Q gi|254780673|r  338 GSDVT-IISFG-----IGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIAN  411 (467)
Q Consensus       338 G~dit-ii~~G-----~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~  411 (467)
                      |..++ ++|||     +.+.-||||.+-|+--.       -..=-|.  +++-+|+.--+.||=.. +....|-|-+++.
T Consensus       314 G~~VE~~~TyG~QPIGr~iGPaLEAkeal~vL~-------~~~~aP~--sL~EKSl~LAg~LLEmg-G~~~~G~Gk~~A~  383 (499)
T TIGR02645       314 GVTVEVAITYGSQPIGRGIGPALEAKEALAVLE-------SSKEAPR--SLVEKSLALAGILLEMG-GAAPRGAGKELAR  383 (499)
T ss_pred             CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHC-------CCCCCCH--HHHHHHHHHHHHHHHCC-CCCCCCCCHHHHH
T ss_conf             907999995188786677673366899999834-------7866773--58999999987885427-8788877589999


Q ss_pred             HHHHHH
Q ss_conf             999967
Q gi|254780673|r  412 QVQRKV  417 (467)
Q Consensus       412 ~i~e~~  417 (467)
                      -+-+.+
T Consensus       384 e~L~SG  389 (499)
T TIGR02645       384 ELLDSG  389 (499)
T ss_pred             HHHHHH
T ss_conf             876547


No 164
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=86.90  E-value=2.4  Score=21.95  Aligned_cols=11  Identities=45%  Similarity=0.730  Sum_probs=7.4

Q ss_pred             HHHHCCCEEEE
Q ss_conf             63220313866
Q gi|254780673|r  273 YSHVPGLKVVI  283 (467)
Q Consensus       273 ~~~iPgl~V~~  283 (467)
                      |+.-|||..++
T Consensus       195 l~~pPGLs~v~  205 (368)
T PRK13479        195 IEGVPGFGFVI  205 (368)
T ss_pred             CCCCCCCEEEE
T ss_conf             45799710122


No 165
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=86.87  E-value=2.1  Score=22.40  Aligned_cols=29  Identities=17%  Similarity=0.326  Sum_probs=21.6

Q ss_pred             CCEEEEEECCHHCCCHHHHHHHCCCCEEE
Q ss_conf             31386652210001055565413783476
Q gi|254780673|r  278 GLKVVIPYTASDAKGLLKAAIRDPNPVIF  306 (467)
Q Consensus       278 gl~V~~P~~~~d~~~ll~~ai~~~~Pvi~  306 (467)
                      |.+-....++.|++..|+.+++.++|++.
T Consensus       146 G~~~~~v~~~~el~~al~~a~~~~~p~vI  174 (178)
T cd02002         146 GVEAERVETPEELDEALREALAEGGPALI  174 (178)
T ss_pred             CCCEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf             99489978999999999999838996899


No 166
>PRK11269 glyoxylate carboligase; Provisional
Probab=86.82  E-value=2.4  Score=21.92  Aligned_cols=13  Identities=15%  Similarity=0.220  Sum_probs=6.9

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9899999999985
Q gi|254780673|r  448 NVDEIIESVESIC  460 (467)
Q Consensus       448 ~~~~I~~av~~v~  460 (467)
                      +.+++-.|.++-+
T Consensus       527 ~~~el~~Al~~Al  539 (591)
T PRK11269        527 KPEDIAPAFEQAK  539 (591)
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9999999999997


No 167
>pfam02749 QRPTase_N Quinolinate phosphoribosyl transferase, N-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The N-terminal domain has an alpha/beta hammerhead fold.
Probab=86.57  E-value=0.81  Score=25.31  Aligned_cols=23  Identities=30%  Similarity=0.773  Sum_probs=19.3

Q ss_pred             EEEECCCCCEECCCCEEEEEECC
Q ss_conf             87741789762589859999537
Q gi|254780673|r   20 AKWKKNEGDLIKQGDIIYEVETD   42 (467)
Q Consensus        20 ~~W~vk~GD~V~~gd~l~eiETD   42 (467)
                      ++|++++||.|+.||+|++++-+
T Consensus        47 v~~~~~dG~~v~~g~~i~~i~G~   69 (88)
T pfam02749        47 VEWLVKDGERVEAGDVILEIEGP   69 (88)
T ss_pred             EEEECCCCCEECCCCEEEEEEEC
T ss_conf             99996889991799999999988


No 168
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; InterPro: IPR008703 This family consists of several bacterial Na^+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na^+-translocating NADH: ubiquinone oxidoreductase (Na^+-NQR) generates an electrochemical Na^+ potential driven by aerobic respiration .; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006814 sodium ion transport.
Probab=86.41  E-value=0.37  Score=27.68  Aligned_cols=71  Identities=24%  Similarity=0.272  Sum_probs=45.9

Q ss_pred             EEEEEEECCCCCEECCCCEEEEEECCCCEEE--EECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             7898774178976258985999953753334--31777868989982378851326975899943777721122223321
Q gi|254780673|r   17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVME--VESIDEGILGKILCPNGTKNVKVNTPIAAILQEGETALDIDKMLLEK   94 (467)
Q Consensus        17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~E--V~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege~a~~~~~~~a~~   94 (467)
                      |-.-+-.|++||.|+.|++|+|   ||.-=+  +.||.+|+|.+|.  =| ++-.+-.+  +|..+|++....+...+..
T Consensus        38 g~~p~~~v~~GD~V~~G~~L~~---~K~~P~v~fTsPvsG~V~ai~--RG-~KR~Llsv--vi~~~gDe~~~~~~~~~~~  109 (466)
T TIGR01936        38 GLRPKMKVRPGDKVKAGQVLFE---DKKNPGVKFTSPVSGEVVAIN--RG-AKRVLLSV--VIKKDGDEQGEFAKFPAYD  109 (466)
T ss_pred             CCCCEEEEEECCEEEECCHHHH---HCCCCCCEEECCCCCEEEEEE--CC-CCCEEEEE--EEECCCCCCCCCCEECCCC
T ss_conf             8665067700770100222333---026898568617775699974--18-97246478--8813788653002000346


Q ss_pred             C
Q ss_conf             2
Q gi|254780673|r   95 P   95 (467)
Q Consensus        95 ~   95 (467)
                      .
T Consensus       110 L  110 (466)
T TIGR01936       110 L  110 (466)
T ss_pred             H
T ss_conf             0


No 169
>pfam09891 DUF2118 Uncharacterized protein conserved in archaea (DUF2118). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=85.93  E-value=2.7  Score=21.62  Aligned_cols=45  Identities=33%  Similarity=0.313  Sum_probs=36.1

Q ss_pred             CEEEEEEEECCCCCEECCCCEEEEEECCCCEEE-EECCCCCEEEEE
Q ss_conf             157898774178976258985999953753334-317778689899
Q gi|254780673|r   15 TEGNIAKWKKNEGDLIKQGDIIYEVETDKAVME-VESIDEGILGKI   59 (467)
Q Consensus        15 ~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~E-V~A~~~G~i~~i   59 (467)
                      .||-.+--...+||.|.+||.++-+.|-|=.+- +.||.+|+|.=+
T Consensus        86 veGy~v~~i~~~G~rV~~g~~lA~v~T~KGevR~~~spv~G~Vv~i  131 (149)
T pfam09891        86 AEGYKVYPIVDEGDRVLKGDRLAAVTTRKGEVRYVRSPVEGTVVFI  131 (149)
T ss_pred             ECCEEEEEECCCCCEEECCCEEEEEEECCCEEEEECCCCCEEEEEE
T ss_conf             0746998872656477218648999816841799449976899999


No 170
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=85.82  E-value=2.7  Score=21.58  Aligned_cols=308  Identities=17%  Similarity=0.186  Sum_probs=156.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCEEEEECC----CCCCCCC----C----CCCCCHHHHCCCCCEECCCCCHHHHHHHH
Q ss_conf             0000000001223554431136506999324----3445886----6----53236475408111011666627899899
Q gi|254780673|r  136 PTSSITVREALRDAIAEEMRRDKDVFIMGEE----VAEYQGA----Y----KVTQGLLQEFGCERVIDTPITEHGFAGIG  203 (467)
Q Consensus       136 ~~~~~TvRea~~~a~~e~m~~d~~~~~~ged----v~~~~g~----f----~~t~gl~~~fg~~R~~d~pi~E~~~~G~a  203 (467)
                      ...-+|=-|||-+.+....++|...   |.+    |..|.|.    |    .-.+.++++.  +=+|--++.|.-....-
T Consensus        27 G~v~ltG~QALVRl~l~Q~~~D~~~---GlnTagfvSGYrGSPLg~~D~~l~~a~~~L~~~--~i~f~pg~NEdLaATav  101 (1186)
T PRK13029         27 GRIYISGTQALVRLPLLQRARDRRA---GLNTAGFISGYRGSPLGALDQALWKAKKHLAAA--DVVFQPGVNEELAATAV  101 (1186)
T ss_pred             CCEEEEHHHHHHHHHHHHHHHHHHC---CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEECCCCCHHHHHHHH
T ss_conf             8687534189999999888899976---987013135799998228899999988578763--95762665889999988


Q ss_pred             HHHHHCCCCCHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9988718864456666-67-------899999999987886742117767888799830244576444433216887632
Q gi|254780673|r  204 IGASFAGLKPIVEFMT-FN-------FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSH  275 (467)
Q Consensus       204 ~G~A~~G~~Piv~~~~-~~-------f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~  275 (467)
                      -|--+.++.|-..+-- |.       =.-|+.|-+.|--     +.|..-.-.|+.-.-.-.+......-+||-.+ |.+
T Consensus       102 wGsQq~~~~~~~~~dGVfg~WYGKgPGvDRsgDa~rHaN-----~~Gts~~GGvl~~~GDDh~~kSSt~~hqSe~~-~~~  175 (1186)
T PRK13029        102 WGSQQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHAN-----LAGTSPLGGVLVLAGDDHGAKSSSVAHQSDHT-FIA  175 (1186)
T ss_pred             HHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCC-----CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH-HHH
T ss_conf             744002458998765458884277888642276876431-----13779989989998359997037675560999-987


Q ss_pred             HCCCEEEEEECCHHCCCHHHH--HH-HC---------------CCCEEEEC-CC--CCCCCCCCCCCC------------
Q ss_conf             203138665221000105556--54-13---------------78347640-21--233333453346------------
Q gi|254780673|r  276 VPGLKVVIPYTASDAKGLLKA--AI-RD---------------PNPVIFLE-NE--ILYGSSFEVPMV------------  322 (467)
Q Consensus       276 iPgl~V~~P~~~~d~~~ll~~--ai-~~---------------~~Pvi~le-~~--~ly~~~~~~p~~------------  322 (467)
                      . +|-|++|++.+|...+=..  ++ |+               -.-++-+. .+  +.....++.|..            
T Consensus       176 ~-~iPvl~Pa~vqe~ld~Gl~g~alSR~sG~Wvg~K~v~~~ve~~~sv~~~~~r~~~~~p~~~~~p~~gl~~r~~d~~~~  254 (1186)
T PRK13029        176 W-GIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLA  254 (1186)
T ss_pred             C-CCCEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             5-997437999899999999999998673857079986200011469965756455559864568998732478998358


Q ss_pred             C-----CEEC----------CCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHC-----CCCCEEEEECCCCCCCCHHH
Q ss_conf             6-----3121----------44311444316874586025788888888753100-----46752797330068579999
Q gi|254780673|r  323 D-----DLVI----------PIGRARIHRQGSDVTIISFGIGMTYATKAAIELEK-----NGIDAELIDLRTIRPMDWQT  382 (467)
Q Consensus       323 ~-----~~~~----------p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~-----~gi~~~vid~r~l~Pld~~~  382 (467)
                      .     ++.+          +|.+..+-.+...+-||+.|.......+|-..|--     +.+...+.-+--.+|||.+.
T Consensus       255 qe~r~~~~kl~aa~af~ran~ld~~~~~~~~~r~Giv~~Gk~~~dv~~Al~~lGi~~~~~~~~gi~i~Kvgm~wPLe~~~  334 (1186)
T PRK13029        255 QEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLLKVGCVWPLDPQS  334 (1186)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf             99999999999999999868866022059988579994584489999999983999789986595699824787888799


Q ss_pred             HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEECCCCC--------CCCCCHH-HHHHCCCCHHHH
Q ss_conf             999998719899995788767678999999999677642-898299717778--------8888966-765608998999
Q gi|254780673|r  383 IFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYL-DAPILTITGRDV--------PMPYAAN-LEKLALPNVDEI  452 (467)
Q Consensus       383 i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L-~~p~~ri~~~d~--------p~P~~~~-le~~~~p~~~~I  452 (467)
                      +.+-++--..++||||-.      +-|-.+|.+..|++- +..|+.++-.|.        ..|.+.. |-...-.+...|
T Consensus       335 ~~~Fa~gl~eilVVEEKr------~~iE~q~k~~ly~~~~~~rP~v~GK~D~~~~~~~~~~~~~G~~llp~~geL~~~~i  408 (1186)
T PRK13029        335 VREFAQGLEEVLVVEEKR------AVIEYQLKEELYNWREDVRPAIFGKFDHRDGAGGEWSVPAGRWLLPAHAELSPALI  408 (1186)
T ss_pred             HHHHHHCCCEEEEEEECH------HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             999984788799997256------77999999996078877897478424577765555567778826786678699999


Q ss_pred             HHHHHHHHC
Q ss_conf             999999850
Q gi|254780673|r  453 IESVESICY  461 (467)
Q Consensus       453 ~~av~~v~~  461 (467)
                      ..++-+.+.
T Consensus       409 a~~l~~rl~  417 (1186)
T PRK13029        409 AKAIARRLA  417 (1186)
T ss_pred             HHHHHHHHH
T ss_conf             999999999


No 171
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208   The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=85.56  E-value=0.77  Score=25.45  Aligned_cols=43  Identities=19%  Similarity=0.205  Sum_probs=33.8

Q ss_pred             EEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf             78987741789762589859999537533343177786898998
Q gi|254780673|r   17 GNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL   60 (467)
Q Consensus        17 G~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~il   60 (467)
                      |.=++=.||+||.|-+||.|+.=+. =.+.-|=||.||+|.+|-
T Consensus        40 G~p~~p~V~~GD~VLkGq~Ia~~~G-~~sap~HaPtSG~v~~I~   82 (444)
T TIGR01945        40 GAPAEPIVKVGDKVLKGQLIAKADG-FVSAPIHAPTSGTVVAIE   82 (444)
T ss_pred             CCCCCCEECCCCEEECCCEECCCCC-EEEEEEECCCCCEEEEEE
T ss_conf             8777730027865206611006774-078700078110688741


No 172
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=85.14  E-value=2.7  Score=21.60  Aligned_cols=114  Identities=17%  Similarity=0.086  Sum_probs=52.3

Q ss_pred             HHHCCCCCEECCCC--CHHHHHHHHHHHHHCC-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             75408111011666--6278998999988718-864456666-6789999999998788674211776788879983024
Q gi|254780673|r  181 LQEFGCERVIDTPI--TEHGFAGIGIGASFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNG  256 (467)
Q Consensus       181 ~~~fg~~R~~d~pi--~E~~~~G~a~G~A~~G-~~Piv~~~~-~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G  256 (467)
                      +.-..|.|++..+-  +=..-++.|+|++++. -||++.+.- ..|.|...+  +..++        +.++|+++..-+-
T Consensus        38 ~~~~~p~~~~~~~~~g~mG~glpaAiGAk~A~Pdr~Vv~i~GDGsf~m~~~E--L~Ta~--------r~~lpv~~vV~NN  107 (196)
T cd02013          38 LRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMSMME--IMTAV--------RHKLPVTAVVFRN  107 (196)
T ss_pred             CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCHHH--HHHHH--------HHCCCEEEEEEEC
T ss_conf             6758999598069866476799999999972789749999579734214489--99999--------9788906999978


Q ss_pred             CCCCCCHH---------------HHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH---CCCCEE
Q ss_conf             45764444---------------33216887632203138665221000105556541---378347
Q gi|254780673|r  257 AAARVAAQ---------------HSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR---DPNPVI  305 (467)
Q Consensus       257 ~~~~~g~~---------------Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~---~~~Pvi  305 (467)
                      .+++.--+               +.-+|..+-... |..-..-.++.|+...|+.|+.   +..|++
T Consensus       108 ~~~g~i~~~q~~~~~~~~~~~~~~~~df~~~A~a~-G~~g~~V~~~~el~~al~~Ala~~~~~~P~l  173 (196)
T cd02013         108 RQWGAEKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTV  173 (196)
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             05789999999870897424536999868999975-9878997899999999999998567998699


No 173
>pfam07831 PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain. This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as E. coli thymidine phosphorylase (TP). The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer.
Probab=85.10  E-value=0.81  Score=25.27  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=21.7

Q ss_pred             CCEEEEEEEECCCCCEECCCCEEEEEECCC
Q ss_conf             115789877417897625898599995375
Q gi|254780673|r   14 MTEGNIAKWKKNEGDLIKQGDIIYEVETDK   43 (467)
Q Consensus        14 m~eG~i~~W~vk~GD~V~~gd~l~eiETDK   43 (467)
                      +.-+.=..+++|.||.|++||+|++|=++.
T Consensus        28 iD~~vGi~l~~k~Gd~V~~g~pl~~i~~~~   57 (75)
T pfam07831        28 IDPGAGIYLHKKVGDKVKKGDPLATIYAND   57 (75)
T ss_pred             CCHHHHHHEECCCCCEECCCCEEEEEECCC
T ss_conf             471122540246899966999399997799


No 174
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=85.02  E-value=3  Score=21.32  Aligned_cols=38  Identities=21%  Similarity=0.169  Sum_probs=25.6

Q ss_pred             HHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE
Q ss_conf             168876322031386652210001055565413783476
Q gi|254780673|r  268 CYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF  306 (467)
Q Consensus       268 ~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~  306 (467)
                      +|..+-... |.+-.--.++.|+...|+.|+..++|++.
T Consensus       142 Df~~~A~a~-G~~g~~V~~~~eL~~Al~~Al~~~gP~vI  179 (205)
T cd02003         142 DFAANARSL-GARVEKVKTIEELKAALAKAKASDRTTVI  179 (205)
T ss_pred             CHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf             899999874-97089938889999999999968996999


No 175
>TIGR01730 RND_mfp efflux transporter, RND family, MFP subunit; InterPro: IPR006143   Gram-negative bacteria produce a number of proteins which are secreted into the growth medium by a mechanism that does not require a cleaved N-terminal signal sequence. These proteins, while having different functions, require the help of two or more proteins for their secretion across the cell envelope. These secretion proteins include members belonging to the ABC transporter family (see the relevant entry IPR003439 from INTERPRO) and a protein belonging to a family which includes the following members , , , , :   Hemolysin secretion protein D from Escherichia coli.  Lactococcin A secretion protein lcnD from Lactococcus lactis. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae.  Calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) cyaD from Bordetella pertussis.  Colicin Vsecretion protein cvaA from Escherichia coli. Proteases secretion protein prtE from Erwinia chrysanthemi.  Alkaline protease secretion protein aprE from Pseudomonas aeruginosa. Multidrug resistance protein A from Escherichia coli.    The secretion proteins are evolutionary related and consist of from 390 to 480 amino acid residues. They seem to be anchored in the inner membrane by a N-terminal transmembrane region. Their exact role in the secretion process is not yet known.; GO: 0008565 protein transporter activity, 0009306 protein secretion, 0016020 membrane.
Probab=84.99  E-value=2.4  Score=22.03  Aligned_cols=36  Identities=25%  Similarity=0.316  Sum_probs=29.7

Q ss_pred             EEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCC
Q ss_conf             3343177786898998237885132697589994377
Q gi|254780673|r   45 VMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEG   81 (467)
Q Consensus        45 t~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~eg   81 (467)
                      ..++.....|.+..+.+.+| +.|.-|+.++.++...
T Consensus        26 ~~~~~~~~~g~~~~~~~~~g-~~~~~g~~~~~~~~~~   61 (333)
T TIGR01730        26 EAELAPEVAGKLTKLLVREG-QKVKKGQLLARLDDDD   61 (333)
T ss_pred             HHHHHHHCCCEEEEEECCCC-CCCCCCCEEEEECCHH
T ss_conf             01001110440022110036-4201362457655457


No 176
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=84.64  E-value=0.95  Score=24.79  Aligned_cols=42  Identities=17%  Similarity=0.180  Sum_probs=27.9

Q ss_pred             CCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             685799999999987198999957887676789999999996776
Q gi|254780673|r  375 IRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD  419 (467)
Q Consensus       375 l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~  419 (467)
                      |--|+.+.+.+.++..+.-+.+|=   +||+.-+=+..+.+-+-+
T Consensus       234 LDN~s~~~~k~av~~~~~~~~lEa---SGgI~l~ni~~yA~tGVD  275 (296)
T PRK09016        234 LDNFTTEQMREAVKRTNGKAALEV---SGNVTLETLREFAETGVD  275 (296)
T ss_pred             ECCCCHHHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHCCCC
T ss_conf             889899999999997479679998---789989999999972999


No 177
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393   Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , .   Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=84.51  E-value=1.3  Score=23.93  Aligned_cols=48  Identities=23%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHCCCE---EEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             279733006857999999999871989---999578876767899999999967764
Q gi|254780673|r  367 AELIDLRTIRPMDWQTIFESVKKTGRL---VTVEEGYPQSSVGSTIANQVQRKVFDY  420 (467)
Q Consensus       367 ~~vid~r~l~Pld~~~i~~sv~kt~~~---i~vee~~~~gg~g~~i~~~i~e~~f~~  420 (467)
                      ++||=|=..+|   +.|.+.|++.+.-   +.+|=   +||+.-+=++...+.+-||
T Consensus       207 ADiImLDNm~p---~~~~~av~~~~~~~p~~~~Ea---SGGitl~n~~~ya~~gVD~  257 (276)
T TIGR00078       207 ADIIMLDNMKP---EEIKEAVELLKGRNPNVLVEA---SGGITLDNIEEYAETGVDV  257 (276)
T ss_pred             CCEEECCCCCH---HHHHHHHHHHHHCCCEEEEEE---ECCCCHHHHHHHHHCCCCE
T ss_conf             95998069894---799999999970299089998---3699878999984089758


No 178
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family; InterPro: IPR014315   Members of this protein are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. (strain PCC 7120) is partially characterised as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. which has seven members..
Probab=84.41  E-value=0.6  Score=26.22  Aligned_cols=40  Identities=25%  Similarity=0.432  Sum_probs=28.9

Q ss_pred             CCCCCC--C-EEEEEEEE-CCCCCEECCCCEEEEEEC-CCCEEEE
Q ss_conf             888881--1-57898774-178976258985999953-7533343
Q gi|254780673|r    9 SLSPTM--T-EGNIAKWK-KNEGDLIKQGDIIYEVET-DKAVMEV   48 (467)
Q Consensus         9 ~lgesm--~-eG~i~~W~-vk~GD~V~~gd~l~eiET-DKat~EV   48 (467)
                      -.++++  . .-.|.+.| |++||.|+.|++|+++++ ++...|+
T Consensus        16 v~aP~~Gf~g~~Ri~~LlPV~eGD~V~~Gq~lA~Ld~~~~r~a~l   60 (363)
T TIGR02971        16 VAAPSSGFAGTDRIKKLLPVAEGDRVKAGQVLAELDSRPERRAEL   60 (363)
T ss_pred             EECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHH
T ss_conf             414788887753155506778887011575367645705799999


No 179
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.30  E-value=1.3  Score=23.84  Aligned_cols=41  Identities=15%  Similarity=0.127  Sum_probs=25.1

Q ss_pred             CCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             85799999999987198999957887676789999999996776
Q gi|254780673|r  376 RPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD  419 (467)
Q Consensus       376 ~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~  419 (467)
                      --|..+.+.+.++..+.=+.+|-   .||+.-+=+..+.+-+-|
T Consensus       226 DNms~~~~~~av~~~~~~~~lEa---SGgI~~~ni~~yA~tGVD  266 (288)
T PRK06978        226 DNFTLDMMREAVRVTAGRAVLEV---SGGVNFDTVRAFAETGVD  266 (288)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHCCCC
T ss_conf             79999999999996479679999---899999999999966999


No 180
>PRK09824 beta-glucoside-specific PTS system components IIABC; Provisional
Probab=83.14  E-value=1.9  Score=22.64  Aligned_cols=17  Identities=35%  Similarity=0.304  Sum_probs=9.5

Q ss_pred             CCCCEEEEECCCCCEEE
Q ss_conf             37533343177786898
Q gi|254780673|r   41 TDKAVMEVESIDEGILG   57 (467)
Q Consensus        41 TDKat~EV~A~~~G~i~   57 (467)
                      .+|+..|---.-+|++.
T Consensus        35 ~skvd~~~lk~i~gV~g   51 (625)
T PRK09824         35 ESKAQAEVLKKTPGIIM   51 (625)
T ss_pred             CCCCCHHHHHCCCCCEE
T ss_conf             45118998957998128


No 181
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase; InterPro: IPR000053   Two highly similar activities are represented in this group: thymidine phosphorylase (TP, gene deoA, 2.4.2.4 from EC) and pyrimidine-nucleoside phosphorylase (PyNP, gene pdp, 2.4.2.2 from EC). Both are dimeric enzymes that function in the salvage pathway to catalyse the reversible phosphorolysis of pyrimidine nucleosides to the free base and sugar moieties. In the case of thymidine phosphorylase, thymidine (and to a lesser extent, 2'-deoxyuridine) is lysed to produce thymine (or uracil) and 2'-deoxyribose-1-phosphate. Pyrimidine-nucleoside phosphorylase performs the analogous reaction on thymidine (to produce the same products) and uridine (to produce uracil and ribose-1-phosphate). PyNP is typically the only pyrimidine nucleoside phosphorylase encoded by Gram positive bacteria, while eukaryotes and proteobacteria encode two: TP, and the unrelated uridine phosphorylase. In humans, TP was originally characterised as platelet-derived endothelial cell growth factor and gliostatin . Structurally, the enzymes are homodimers, each composed of a rigid all alpha-helix lobe and a mixed alpha-helix/beta-sheet lobe, which are connected by a flexible hinge , . Prior to substrate binding, the lobes are separated by a large cleft. A functional active site and subsequent catalysis occurs upon closing of the cleft. The active site, composed of a phosphate binding site and a (deoxy)ribonucleotide binding site within the cleft region, is highly conserved between the two enzymes of this group. Active site residues (Escherichia coli DeoA numbering) include the phosphate binding Lys84 and Ser86 (close to a glycine-rich loop), Ser113, and Thr123, and the pyrimidine nucleoside-binding Arg171, Ser186, and Lys190. Sequence comparison between the active site residues for both enzymes reveals only one difference , which has been proposed to partially mediate substrate specificity. In TP, position 111 is a methionine, while the analogous position in PyNP is lysine. It should be noted that the uncharacterised archaeal members of this family differ in a number of respects from either of the characterised activities. The residue at position 108 is lysine, indicating the activity might be PyNP-like (though the determinants of substrate specificity have not been fully elucidated). Position 171 is glutamate (negative charge side chain) rather than arginine (positive charge side chain). In addition, a large loop that may "lock in" the substrates within the active site is much smaller than in the characterised members. It is not clear what effect these and other differences have on activity and specificity.; GO: 0006206 pyrimidine base metabolic process.
Probab=83.03  E-value=1.3  Score=23.80  Aligned_cols=45  Identities=22%  Similarity=0.295  Sum_probs=27.6

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCCC
Q ss_conf             999999987198999957887676789999999-996776428982
Q gi|254780673|r  381 QTIFESVKKTGRLVTVEEGYPQSSVGSTIANQV-QRKVFDYLDAPI  425 (467)
Q Consensus       381 ~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i-~e~~f~~L~~p~  425 (467)
                      ..+.+.-++.||=+++.=..-..=+|..|-..| .+++.+.|+..-
T Consensus       218 ~~mv~~G~~~Grkv~a~lTdMn~PLG~a~GNa~EV~EA~~~L~G~~  263 (425)
T TIGR02644       218 KLMVEIGKGAGRKVVALLTDMNQPLGRAIGNALEVKEAVDFLKGEK  263 (425)
T ss_pred             HHHHHHHHHCCCEEEEEEECCCHHHHHHCCHHHHHHHHHHHHCCCC
T ss_conf             9999999726987999972586068861011899999999865884


No 182
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=82.85  E-value=3.6  Score=20.71  Aligned_cols=47  Identities=19%  Similarity=0.274  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC
Q ss_conf             012235544311365-06999324344588665323647540811101166
Q gi|254780673|r  144 EALRDAIAEEMRRDK-DVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP  193 (467)
Q Consensus       144 ea~~~a~~e~m~~d~-~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p  193 (467)
                      +++.++.. .+.+-+ -+++.|..+.. -|+...-+.|.++.|- .|+-++
T Consensus       185 ~~l~~~~~-~L~~AkrPvii~G~g~~~-~~a~~~l~~lae~l~~-PV~~t~  232 (521)
T PRK07092        185 AALAALGD-ALDAARNPALVVGPAVDR-AGAWDDAVRLAERHRA-PVWVAP  232 (521)
T ss_pred             HHHHHHHH-HHHCCCCCEEEECCCCCC-CCHHHHHHHHHHHHCC-CEEEEC
T ss_conf             99999999-997289978998767040-3549999999998699-778732


No 183
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=82.73  E-value=1.5  Score=23.38  Aligned_cols=59  Identities=17%  Similarity=0.207  Sum_probs=31.1

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHH--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
Q ss_conf             27973300685799999999987--19899995788767678999999999677642898299717778888
Q gi|254780673|r  367 AELIDLRTIRPMDWQTIFESVKK--TGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMP  436 (467)
Q Consensus       367 ~~vid~r~l~Pld~~~i~~sv~k--t~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P  436 (467)
                      +++|=|-.   |..+.+.+.++.  .+.-+.+|-   +||+.-+=+....+-+-+     ..-++.+-+..|
T Consensus       209 aDiImLDN---m~~e~~~~av~~l~~~~~~~lEa---SGgIt~~ni~~yA~tGVD-----~IS~galths~~  269 (280)
T COG0157         209 ADIIMLDN---MSPEELKEAVKLLGLAGRALLEA---SGGITLENIREYAETGVD-----VISVGALTHSAP  269 (280)
T ss_pred             CCEEEECC---CCHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHCCCC-----EEEECCCCCCCC
T ss_conf             99999769---99999999999744477669997---589787789998626997-----998073304775


No 184
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=82.36  E-value=0.91  Score=24.95  Aligned_cols=17  Identities=18%  Similarity=0.284  Sum_probs=7.3

Q ss_pred             EECCCCCCCCCCCEEEEE
Q ss_conf             823788513269758999
Q gi|254780673|r   60 LCPNGTKNVKVNTPIAAI   77 (467)
Q Consensus        60 lv~eG~e~V~VG~~ia~i   77 (467)
                      ++++| |.|..|++|..+
T Consensus        85 ~v~~G-d~V~~G~~L~~~  101 (124)
T cd00210          85 HVEEG-QRVKQGDKLLEF  101 (124)
T ss_pred             EECCC-CEECCCCEEEEE
T ss_conf             97488-999899999998


No 185
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=82.34  E-value=3.4  Score=20.87  Aligned_cols=53  Identities=32%  Similarity=0.416  Sum_probs=44.1

Q ss_pred             CCEEE---EHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf             74586---025788888888753100467527973300685799999999987198999
Q gi|254780673|r  340 DVTII---SFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVT  395 (467)
Q Consensus       340 ditii---~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~  395 (467)
                      .+.|+   .||++-..|...|+-|.+.|+.++++++.+-   |.+-|.+-+.+...+++
T Consensus       248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv  303 (388)
T COG0426         248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV  303 (388)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC---CHHHHHHHHHHCCEEEE
T ss_conf             179998422378799999998776115996299991558---89999999875377999


No 186
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=82.25  E-value=3.8  Score=20.56  Aligned_cols=107  Identities=17%  Similarity=0.203  Sum_probs=59.3

Q ss_pred             CEE-CCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC---
Q ss_conf             101-166662-7899899998871886445666667--899999999987886742117767888799830244576---
Q gi|254780673|r  188 RVI-DTPITE-HGFAGIGIGASFAGLKPIVEFMTFN--FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR---  260 (467)
Q Consensus       188 R~~-d~pi~E-~~~~G~a~G~A~~G~~Piv~~~~~~--f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~---  260 (467)
                      |+| |-|.+= ...+..|+|+|++--||++. ...|  |.+ -    +|..+..     .+.++|+++..-.-.+++   
T Consensus        43 ~~~~NRG~sGIdg~lstAiGaa~a~~~pvv~-i~GDgsf~~-d----~~eL~t~-----~~~~~pv~ivV~NN~GggIf~  111 (175)
T cd02009          43 RVFANRGASGIDGTLSTALGIALATDKPTVL-LTGDLSFLH-D----LNGLLLG-----KQEPLNLTIVVINNNGGGIFS  111 (175)
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHCCCCCEEE-EEECHHHHC-C----HHHHHHH-----HHCCCCEEEEEEECCCCHHHH
T ss_conf             7994688535220899999999658998899-970268661-6----7899999-----866998299999489833999


Q ss_pred             --------------CCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE
Q ss_conf             --------------4444332168876322031386652210001055565413783476
Q gi|254780673|r  261 --------------VAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF  306 (467)
Q Consensus       261 --------------~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~  306 (467)
                                    .+..|.-++..+ +.-=|+.-..+.+..|++..|..++..++|++.
T Consensus       112 ~l~~~~~~~~~~~~~~tp~~~df~~l-A~a~G~~~~~v~~~~el~~al~~~~~~~gp~lI  170 (175)
T cd02009         112 LLPQASFEDEFERLFGTPQGLDFEHL-AKAYGLEYRRVSSLDELEQALESALAQDGPHVI  170 (175)
T ss_pred             HHHHHHCCCCCCEEECCCCCCCHHHH-HHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf             98775036864312157776689999-998699779849999999999999838998999


No 187
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.08  E-value=1.6  Score=23.14  Aligned_cols=39  Identities=13%  Similarity=0.049  Sum_probs=18.8

Q ss_pred             CCCHHHHHHHHHHC---CCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             57999999999871---9899995788767678999999999677
Q gi|254780673|r  377 PMDWQTIFESVKKT---GRLVTVEEGYPQSSVGSTIANQVQRKVF  418 (467)
Q Consensus       377 Pld~~~i~~sv~kt---~~~i~vee~~~~gg~g~~i~~~i~e~~f  418 (467)
                      -|..+.+.+.++.-   ..-+.+|=   .||+.-+=+....+-+-
T Consensus       226 Nms~e~~~~av~~~~~~~~~v~lEa---SGgI~~~ni~~yA~tGV  267 (288)
T PRK07896        226 NFPVWQTQEAVQRRDARAPTVLLES---SGGLTLDTAAAYAATGV  267 (288)
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHCCC
T ss_conf             9999999999999837698748999---88999999999996599


No 188
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=81.78  E-value=4  Score=20.45  Aligned_cols=46  Identities=26%  Similarity=0.243  Sum_probs=35.0

Q ss_pred             CCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             985999953753334317778689899823788513269758999437
Q gi|254780673|r   33 GDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        33 gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      -...-.++. .-..++.+...|.+.+|++++| +.|..|++++.+++.
T Consensus        55 ~~~~G~v~~-~~~~~v~~~~~G~v~~i~v~~G-~~Vk~Gq~L~~ld~~  100 (372)
T COG0845          55 VRAPGRVEA-TRSVEVLARVAGIVAEILVKEG-DRVKKGQLLARLDPS  100 (372)
T ss_pred             EEEEEEEEE-EEEEEEECCCCCEEEEEEECCC-CEEECCCEEEEECCH
T ss_conf             787569986-1347874036747989983689-888359748995532


No 189
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=81.75  E-value=2.5  Score=21.84  Aligned_cols=172  Identities=18%  Similarity=0.258  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH-HHHH-HHHHHHCCCEEEEEECCHHCCCHHHHHHH
Q ss_conf             899999999987886742117767888799830244576444433-2168-87632203138665221000105556541
Q gi|254780673|r  222 FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHS-QCYA-AWYSHVPGLKVVIPYTASDAKGLLKAAIR  299 (467)
Q Consensus       222 f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~~-~~~~~iPgl~V~~P~~~~d~~~ll~~ai~  299 (467)
                      |.-=-.+++-..||+...-..|....|+.+-|    +.|.|-||- |.+. .+..+-|+.+|++-+.. +.-.-+..+++
T Consensus       121 FVvG~sN~lA~aAA~~Va~~pg~~yNPLfIyG----~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae-~F~~~~v~al~  195 (447)
T PRK00149        121 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYG----GVGLGKTHLLHAIGNYILEKNPNAKVVYVSSE-KFTNDFVKALR  195 (447)
T ss_pred             CEECCCCHHHHHHHHHHHHCCCCCCCCEEEEC----CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHH-HHHHHHHHHHH
T ss_conf             22269859999999999837676778558977----99887889999999999985899728995499-99999999985


Q ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEE-----------EEECCCCCEEEEHHHHHHHHHHHHHHHHC---CCC
Q ss_conf             3783476402123333345334663121443114-----------44316874586025788888888753100---467
Q gi|254780673|r  300 DPNPVIFLENEILYGSSFEVPMVDDLVIPIGRAR-----------IHRQGSDVTIISFGIGMTYATKAAIELEK---NGI  365 (467)
Q Consensus       300 ~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~-----------i~~~G~ditii~~G~~~~~a~~aa~~L~~---~gi  365 (467)
                      .++.--|   |-.| ++.++--.||.-+=-||..           ....|+.+-+-+-. .-.+.-..-+.|..   -|+
T Consensus       196 ~~~~~~F---r~~y-r~~DvLliDDiqfl~gk~~tqeeff~~fn~l~~~~kqiv~tsd~-~P~~l~~l~~rL~SRf~~Gl  270 (447)
T PRK00149        196 NNAMEEF---KEKY-RSVDVLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVITSDR-PPKELEGLEDRLRSRFEWGL  270 (447)
T ss_pred             CCCHHHH---HHHH-HCCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCC-CHHHCCCCCHHHHHHHHCCE
T ss_conf             1869999---9999-72885432148886055779999999999999849968995788-96765651177886763762


Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             527973300685799999999987198999957887676789999999996
Q gi|254780673|r  366 DAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRK  416 (467)
Q Consensus       366 ~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~  416 (467)
                      .++      |.|.|.++-++.+++--.    +.   .-.+..++...|.++
T Consensus       271 ~~~------i~~Pd~e~r~~Il~~k~~----~~---~~~l~~~v~~~iA~~  308 (447)
T PRK00149        271 TVD------IEPPDLETRVAILQKKAE----EE---GINLPNEVLEFIAKR  308 (447)
T ss_pred             EEE------CCCCCHHHHHHHHHHHHH----HC---CCCCCHHHHHHHHHH
T ss_conf             651------059999999999999999----72---899998999999971


No 190
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=81.67  E-value=4  Score=20.42  Aligned_cols=114  Identities=14%  Similarity=0.129  Sum_probs=57.2

Q ss_pred             HHHHCCCCCEECCCCCHHHHHH----HHHHHHHCC-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             4754081110116666278998----999988718-864456666-6789999999998788674211776788879983
Q gi|254780673|r  180 LLQEFGCERVIDTPITEHGFAG----IGIGASFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG  253 (467)
Q Consensus       180 l~~~fg~~R~~d~pi~E~~~~G----~a~G~A~~G-~~Piv~~~~-~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~  253 (467)
                      +.+-+.|.|++..+=  .+.+|    .|+|++++- -||++.+.- ..|.|...+  +..+.        +.++|+++..
T Consensus        32 ~~~~~~p~~~~~s~~--~g~mG~glpaAiGa~lA~p~~~Vv~i~GDG~f~m~~~E--L~Ta~--------~~~lpi~iiV   99 (177)
T cd02010          32 YYRTYAPNTCLISNG--LATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNSQE--LETAV--------RLKIPLVVLI   99 (177)
T ss_pred             HCCCCCCCEEECCCC--CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCHH--HHHHH--------HHCCCEEEEE
T ss_conf             677589990874898--63688899999999987899859999289861106668--88999--------7288403999


Q ss_pred             ECCCCCC-------------CCHHH-HHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE
Q ss_conf             0244576-------------44443-32168876322031386652210001055565413783476
Q gi|254780673|r  254 PNGAAAR-------------VAAQH-SQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF  306 (467)
Q Consensus       254 p~G~~~~-------------~g~~H-s~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~  306 (467)
                      -.-.+++             .|... .-++..+-... |.+-..-.++.|+...|+.++..++|+++
T Consensus       100 ~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~el~~al~~a~~~~gp~li  165 (177)
T cd02010         100 WNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVI  165 (177)
T ss_pred             EECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf             9898048999999986397534618999989999987-98799989999999999999848995999


No 191
>pfam00358 PTS_EIIA_1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1.
Probab=80.23  E-value=1.2  Score=24.08  Aligned_cols=17  Identities=18%  Similarity=0.255  Sum_probs=6.3

Q ss_pred             EECCCCCCCCCCCEEEEE
Q ss_conf             823788513269758999
Q gi|254780673|r   60 LCPNGTKNVKVNTPIAAI   77 (467)
Q Consensus        60 lv~eG~e~V~VG~~ia~i   77 (467)
                      ++++|+ .|..|++|+.+
T Consensus        90 ~v~~Gd-~V~~G~~L~~~  106 (133)
T pfam00358        90 HVEEGD-RVKQGDKLLEF  106 (133)
T ss_pred             EECCCC-EECCCCEEEEE
T ss_conf             975899-99899999998


No 192
>PRK04350 thymidine phosphorylase; Provisional
Probab=80.00  E-value=2.6  Score=21.71  Aligned_cols=18  Identities=11%  Similarity=0.285  Sum_probs=6.5

Q ss_pred             CHHHHHHHHHHHHHCCCC
Q ss_conf             627899899998871886
Q gi|254780673|r  195 TEHGFAGIGIGASFAGLK  212 (467)
Q Consensus       195 ~E~~~~G~a~G~A~~G~~  212 (467)
                      ++-.+..+-...+.+||-
T Consensus       124 sd~e~aaFl~A~~~~gm~  141 (502)
T PRK04350        124 SDIELSAFLTASAINGLD  141 (502)
T ss_pred             CHHHHHHHHHHHHHCCCC
T ss_conf             899999999999734999


No 193
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.97  E-value=2.4  Score=21.93  Aligned_cols=55  Identities=15%  Similarity=0.140  Sum_probs=30.6

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCC
Q ss_conf             279733006857999999999871989999578876767899999999967764289829971777
Q gi|254780673|r  367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRD  432 (467)
Q Consensus       367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d  432 (467)
                      +++|=|-   -|+.+.+.+.++.-+.-+.+|   ..||+.-+=+....+-+-+     ..-+++.-
T Consensus       213 ~d~ImLD---Nmsp~~~~~av~~~~~~~~~E---aSGgI~~~ni~~yA~tGvD-----~IS~g~lt  267 (281)
T PRK06106        213 VDAVLLD---NMSPDTLREAVAIVAGRAITE---ASGRITPETAPAIAASGVD-----LISVGWLT  267 (281)
T ss_pred             CCEEEEC---CCCHHHHHHHHHHHCCCEEEE---EECCCCHHHHHHHHHCCCC-----EEECCHHH
T ss_conf             9899987---999999999999856846899---9789999999999973999-----99838432


No 194
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit; InterPro: IPR005726   ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , .  F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP.   A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species.    This entry represents the alpha subunit from the A1 complex of A-ATPases. The A1 complex contains three copies each of subunits alpha (or A) and beta (or B) (IPR005724 from INTERPRO), both of which form the headpiece that participates in nucleotide binding. However, only the alpha subunit is catalytic, the beta subunit being regulatory in function .   More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=78.88  E-value=4.9  Score=19.81  Aligned_cols=56  Identities=36%  Similarity=0.464  Sum_probs=44.5

Q ss_pred             ECCCCCEECCCCEEEEE-ECCCCEEE--EECCCCC-EEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf             41789762589859999-53753334--3177786-8989982378851326975899943777
Q gi|254780673|r   23 KKNEGDLIKQGDIIYEV-ETDKAVME--VESIDEG-ILGKILCPNGTKNVKVNTPIAAILQEGE   82 (467)
Q Consensus        23 ~vk~GD~V~~gd~l~ei-ETDKat~E--V~A~~~G-~i~~ilv~eG~e~V~VG~~ia~i~~ege   82 (467)
                      .++.||.|+.||+|-.| ||..+..-  ||-...| .|.+|  .+| + ..|-+.|+.+..+|.
T Consensus       122 ~v~~Gd~V~~Gd~~G~V~ET~~i~h~ilvPp~~~gg~~~~~--~~G-~-ftV~d~i~~~~~~G~  181 (584)
T TIGR01043       122 TVKEGDKVEGGDIIGVVQETSLIEHKILVPPNVEGGEIVEI--AEG-D-FTVEDTIAVVEKDGE  181 (584)
T ss_pred             EECCCCEECCCCEEEEECCCCCEEEEEEECCCCCCCEEEEE--ECC-C-EEEEEEEEEEECCCC
T ss_conf             12268643476158776376503347773574578757787--267-3-146556899822788


No 195
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=78.86  E-value=4  Score=20.41  Aligned_cols=45  Identities=13%  Similarity=0.232  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHH-H------HHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             89999999996-7------7642898299717778888896676560899899999999985
Q gi|254780673|r  406 GSTIANQVQRK-V------FDYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVESIC  460 (467)
Q Consensus       406 g~~i~~~i~e~-~------f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~av~~v~  460 (467)
                      ..++...+.++ +      +..|+..+.||+...    +.. .+     +.+..+++++.++
T Consensus       304 ~~~~~~~l~~~~~i~i~~g~g~~~~~~fRIg~mG----~~~-~~-----di~~~l~al~~~L  355 (356)
T cd06451         304 GDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMG----EAT-RE-----DVLGVLSALEEAL  355 (356)
T ss_pred             HHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCC----CCC-HH-----HHHHHHHHHHHHH
T ss_conf             9999999999789999788665689589861898----999-99-----9999999999985


No 196
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=78.65  E-value=2.5  Score=21.86  Aligned_cols=50  Identities=12%  Similarity=0.193  Sum_probs=23.8

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             27973300685799999999987198999957887676789999999996776
Q gi|254780673|r  367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD  419 (467)
Q Consensus       367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~  419 (467)
                      +++|=|-...|=+.....+.+++...-+.+|-   .||+.-+=+....+-+-+
T Consensus       204 ~d~I~LDn~s~~~ik~~v~~~~~~~~~v~iea---SGgI~~~ni~~yA~tGvD  253 (272)
T cd01573         204 ADILQLDKFSPEELAELVPKLRSLAPPVLLAA---AGGINIENAAAYAAAGAD  253 (272)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHCCCC
T ss_conf             99999779999999999999744488769999---899999999999973999


No 197
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=77.97  E-value=5.2  Score=19.63  Aligned_cols=59  Identities=24%  Similarity=0.384  Sum_probs=41.3

Q ss_pred             EEEE----CCCCCEECCCCEEEEEE-CC---CCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf             8774----17897625898599995-37---5333431777868989982378851326975899943777
Q gi|254780673|r   20 AKWK----KNEGDLIKQGDIIYEVE-TD---KAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE   82 (467)
Q Consensus        20 ~~W~----vk~GD~V~~gd~l~eiE-TD---Kat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege   82 (467)
                      .+|.    +|+||.|..||+|-.|. |-   |..  ||-+.+|.+..+.+.+| + ..|.++||.+.+++.
T Consensus       114 ~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~im--vpp~~~~~~v~~i~~~G-~-ytv~d~ia~v~~~~g  180 (588)
T COG1155         114 KKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRI--MVPPGVSGKVTWIAEEG-E-YTVEDVIATVSTEGG  180 (588)
T ss_pred             CCCCCCCCCCCCCEECCCCEEEEECCCCCEEEEE--ECCCCCCEEEEEEECCC-C-CEEEEEEEEEECCCC
T ss_conf             5200034666698752685489860677357998--37887762899995588-7-156679999952797


No 198
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.79  E-value=2.7  Score=21.58  Aligned_cols=50  Identities=20%  Similarity=0.366  Sum_probs=24.9

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHCC--CEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             2797330068579999999998719--8999957887676789999999996776
Q gi|254780673|r  367 AELIDLRTIRPMDWQTIFESVKKTG--RLVTVEEGYPQSSVGSTIANQVQRKVFD  419 (467)
Q Consensus       367 ~~vid~r~l~Pld~~~i~~sv~kt~--~~i~vee~~~~gg~g~~i~~~i~e~~f~  419 (467)
                      +++|=|-...|=+...+.+.+++.+  .=+.+|=   .||+--+=++.+.+-+-|
T Consensus       204 ~d~I~LDn~s~e~~~~~v~~l~~~~~~~~v~iea---SGGI~~~ni~~ya~tGVD  255 (279)
T PRK08385        204 ADIIMLDNMTPEEIREVIEALKELGLREKVKIEV---SGGITPETIAEYAKLDVD  255 (279)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHCCCC
T ss_conf             9999984999999999999987507689789999---789989999999855989


No 199
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.17  E-value=2.9  Score=21.38  Aligned_cols=48  Identities=10%  Similarity=0.077  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             279733006857999999999871989999578876767899999999967
Q gi|254780673|r  367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKV  417 (467)
Q Consensus       367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~  417 (467)
                      +++|=|-...|=+.....+..++...=+.+|=   .||+.-+=+....+-+
T Consensus       202 aDiI~LDn~~~e~~k~~v~~~~~~~~~v~iea---SGGI~~~ni~~yA~~G  249 (272)
T PRK05848        202 ADIVMCDNMSVEETKEIVAYRNANYPHVLLEA---SGNISLETINAYAKSG  249 (272)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEE---ECCCCHHHHHHHHHCC
T ss_conf             99899589999999999998746488779999---7999899999999659


No 200
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=76.75  E-value=3.2  Score=21.08  Aligned_cols=11  Identities=18%  Similarity=0.015  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q ss_conf             88888888753
Q gi|254780673|r  349 GMTYATKAAIE  359 (467)
Q Consensus       349 ~~~~a~~aa~~  359 (467)
                      .+..++|+.+-
T Consensus       327 ~iGnaLEv~Ea  337 (500)
T TIGR03327       327 AIGPALEAKEA  337 (500)
T ss_pred             CCCCHHHHHHH
T ss_conf             24318999999


No 201
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321   These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=76.63  E-value=1.6  Score=23.12  Aligned_cols=85  Identities=16%  Similarity=0.193  Sum_probs=36.5

Q ss_pred             EECCCCCEEEEH---HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC-CCEEEE----ECCCCCCCHH
Q ss_conf             431687458602---57888888887531004675279733006857999999999871-989999----5788767678
Q gi|254780673|r  335 HRQGSDVTIISF---GIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKT-GRLVTV----EEGYPQSSVG  406 (467)
Q Consensus       335 ~~~G~ditii~~---G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt-~~~i~v----ee~~~~gg~g  406 (467)
                      +||-=||=+|+=   --++..||.||+.        .+.-|-||=       -+|.-+| +|+|-+    |-....-.++
T Consensus       197 LReDPDvILiGE~RD~ET~~~AL~AAET--------GHLV~gTLH-------TnsA~~ti~RIid~FP~~~~~qiR~~La  261 (350)
T TIGR01420       197 LREDPDVILIGEMRDLETVELALTAAET--------GHLVFGTLH-------TNSAAKTIERIIDVFPAEEQEQIRTQLA  261 (350)
T ss_pred             HCCCCCEEEEECCCCHHHHHHHHHHHHH--------CCHHHHHHH-------HHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             1028988998255627899999987421--------315676666-------4238887677742597756689999998


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf             99999999967764289829971777888
Q gi|254780673|r  407 STIANQVQRKVFDYLDAPILTITGRDVPM  435 (467)
Q Consensus       407 ~~i~~~i~e~~f~~L~~p~~ri~~~d~p~  435 (467)
                      ..+.+.++++.... +.-.-|+...++=+
T Consensus       262 ~~L~Av~sQrL~p~-~~G~GRv~~~Eil~  289 (350)
T TIGR01420       262 ESLVAVISQRLLPK-KNGGGRVLAVEILI  289 (350)
T ss_pred             HHHHHHHCCCCEEE-CCCCCEEEEEEEEC
T ss_conf             76787700054223-38962588887521


No 202
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.57  E-value=3  Score=21.27  Aligned_cols=47  Identities=17%  Similarity=0.167  Sum_probs=24.5

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             27973300685799999999987198999957887676789999999996776
Q gi|254780673|r  367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD  419 (467)
Q Consensus       367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~  419 (467)
                      +++|=|-...   .+.+.+.++.-+.-+.+|   ..||+.-+=+....+-+-|
T Consensus       214 ~D~ImLDnms---~~~i~~av~~i~~~~~lE---aSGgI~~~ni~~yA~tGVD  260 (281)
T PRK06543        214 VDTIMLDNFT---LDQLREGVELIDGRAIVE---ASGNVSLNTVPAIASTGVD  260 (281)
T ss_pred             CCEEEECCCC---HHHHHHHHHHHCCCEEEE---EECCCCHHHHHHHHHCCCC
T ss_conf             9999977989---999999999757937999---9889999999999973999


No 203
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.41  E-value=3.1  Score=21.21  Aligned_cols=47  Identities=19%  Similarity=0.162  Sum_probs=23.4

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             27973300685799999999987198999957887676789999999996776
Q gi|254780673|r  367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD  419 (467)
Q Consensus       367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~  419 (467)
                      +++|=|-...|   +.+.+.++....-+.+|=   .||+.-+=+....+-+-|
T Consensus       209 ~diImLDNm~p---~~ik~~v~~~~~~~~~Ea---SGgI~~~ni~~yA~tGVD  255 (277)
T PRK08072        209 ADIIMFDNRTP---DEIREFVKLVPSAIVTEA---SGGITLENLPKYGGTGVD  255 (277)
T ss_pred             CCEEEECCCCH---HHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHCCCC
T ss_conf             98999879899---999999996169649999---889989999999964999


No 204
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=76.26  E-value=2.7  Score=21.60  Aligned_cols=51  Identities=10%  Similarity=0.087  Sum_probs=30.6

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             527973300685799999999987198999957887676789999999996776
Q gi|254780673|r  366 DAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD  419 (467)
Q Consensus       366 ~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~  419 (467)
                      .+++|-|-...|=+.....+.+++.+.=+++|-   .||+--+=+....+-+-|
T Consensus       209 gaD~IlLDnmsp~~l~~av~~~~~~~~~~~lEa---SGGI~~~ni~~yA~tGVD  259 (284)
T PRK06096        209 QPDVLQLDKFSPQQATEIAQIAPSLAPHCTLAL---TGGINLTTLKNYLDCGIR  259 (284)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHCCCC
T ss_conf             999999689899999999999872179779999---899999999999980999


No 205
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component; InterPro: IPR001127   The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) ,  is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars.   The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII).    The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site.    An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , .     ; GO: 0005351 sugar:hydrogen ion symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane.
Probab=75.71  E-value=1.4  Score=23.70  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=20.1

Q ss_pred             EEEEECCCCCEECCCCEEEEEECCCCEE
Q ss_conf             9877417897625898599995375333
Q gi|254780673|r   19 IAKWKKNEGDLIKQGDIIYEVETDKAVM   46 (467)
Q Consensus        19 i~~W~vk~GD~V~~gd~l~eiETDKat~   46 (467)
                      +=+-++++||.|++||.|.|+.-|+..-
T Consensus        89 vF~~~v~~G~~V~~Gd~l~efD~~~i~~  116 (129)
T TIGR00830        89 VFTSHVEEGDKVKKGDPLLEFDLPAIKK  116 (129)
T ss_pred             EEEEEEEECCEECCCCEEEEECHHHHHH
T ss_conf             2478764387871797799956699963


No 206
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component; InterPro: IPR011297   The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) ,  is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars.   The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII).    The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site.    An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , .    This entry represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (hydroquinone-O-beta-D-glucopyranoside) . These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system.
Probab=75.48  E-value=1  Score=24.64  Aligned_cols=12  Identities=25%  Similarity=0.598  Sum_probs=3.9

Q ss_pred             HHHHHHHHHHCC
Q ss_conf             998999988718
Q gi|254780673|r  199 FAGIGIGASFAG  210 (467)
Q Consensus       199 ~~G~a~G~A~~G  210 (467)
                      |+|-|+|=+..|
T Consensus       410 ~igGa~GG~i~G  421 (660)
T TIGR01995       410 MIGGAVGGAIIG  421 (660)
T ss_pred             EHHHHHHHHHHH
T ss_conf             057889999999


No 207
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=75.21  E-value=3  Score=21.30  Aligned_cols=54  Identities=17%  Similarity=0.211  Sum_probs=27.7

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCC
Q ss_conf             27973300685799999999987198999957887676789999999996776428982997177
Q gi|254780673|r  367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGR  431 (467)
Q Consensus       367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~  431 (467)
                      +++|-|-...|   +.+.+.++.-+.=+.+|   ..||+--+=+....+-+-+     ..-++++
T Consensus       203 adiI~LDn~sp---e~~~~~v~~~~~~v~ie---aSGgIn~~ni~~ya~~GvD-----~Is~g~l  256 (268)
T cd01572         203 ADIIMLDNMSP---EELREAVALLKGRVLLE---ASGGITLENIRAYAETGVD-----YISVGAL  256 (268)
T ss_pred             CCEEEECCCCH---HHHHHHHHHHCCCEEEE---EECCCCHHHHHHHHHCCCC-----EEECCHH
T ss_conf             99999779999---99999999866956999---9899989999999975999-----9983854


No 208
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.18  E-value=2.9  Score=21.35  Aligned_cols=47  Identities=17%  Similarity=0.266  Sum_probs=24.5

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             27973300685799999999987198999957887676789999999996776
Q gi|254780673|r  367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFD  419 (467)
Q Consensus       367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~  419 (467)
                      +++|-|-...   .+.+.+.++..+.=+.+|   -.||+--+=+....+-+-|
T Consensus       210 aDiI~LDnms---~~~lk~av~~~~~~~~iE---aSGGI~~~ni~~yA~tGvD  256 (277)
T PRK05742        210 ADIVMLDELS---LDDMREAVRLTAGRAKLE---ASGGINETTLRVIAETGVD  256 (277)
T ss_pred             CCEEEECCCC---HHHHHHHHHHHCCCEEEE---EECCCCHHHHHHHHHCCCC
T ss_conf             9899986999---999999999747974899---9889999999999974999


No 209
>pfam06898 YqfD Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown.
Probab=74.65  E-value=5.1  Score=19.69  Aligned_cols=18  Identities=17%  Similarity=0.543  Sum_probs=8.2

Q ss_pred             EEECCCCCEEEEEEECCC
Q ss_conf             431777868989982378
Q gi|254780673|r   47 EVESIDEGILGKILCPNG   64 (467)
Q Consensus        47 EV~A~~~G~i~~ilv~eG   64 (467)
                      .+-|-.+|+|.++.+..|
T Consensus       191 ~iVA~k~GvI~~i~v~~G  208 (383)
T pfam06898       191 NIVAKKDGIITRMYVTKG  208 (383)
T ss_pred             CEEECCCCEEEEEEECCC
T ss_conf             658999979999996477


No 210
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=74.51  E-value=6.4  Score=19.01  Aligned_cols=112  Identities=17%  Similarity=0.155  Sum_probs=55.4

Q ss_pred             CCCCCEECCCC-CH-HHHHHHHHHHHHCC-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             08111011666-62-78998999988718-864456666-6789999999998788674211776788879983024457
Q gi|254780673|r  184 FGCERVIDTPI-TE-HGFAGIGIGASFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAA  259 (467)
Q Consensus       184 fg~~R~~d~pi-~E-~~~~G~a~G~A~~G-~~Piv~~~~-~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~  259 (467)
                      ..|.|++-.+- .- ..-++.|+|++++- -||++.+.- ..|.|...+  +..++        +.++|+++..-.-.++
T Consensus        39 ~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~Vv~i~GDG~f~m~~~E--l~Ta~--------~~~lpi~~vV~nN~~~  108 (178)
T cd02014          39 NGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD--LITAV--------KYNLPVIVVVFNNSDL  108 (178)
T ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHH--HHHHH--------HHCCCCEEEEEECCHH
T ss_conf             8998487378865377899999999984899808999777067406189--99899--------8589813999989615


Q ss_pred             C-------------CC-HHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE
Q ss_conf             6-------------44-44332168876322031386652210001055565413783476
Q gi|254780673|r  260 R-------------VA-AQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF  306 (467)
Q Consensus       260 ~-------------~g-~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~  306 (467)
                      +             .| ..+.-++..+-... |+.-..-.++.|+...|+.+++.++|+++
T Consensus       109 g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gP~li  168 (178)
T cd02014         109 GFIKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVI  168 (178)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf             8999999985799752537999889999976-97079978999999999999968997999


No 211
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=73.58  E-value=6.7  Score=18.85  Aligned_cols=33  Identities=18%  Similarity=0.374  Sum_probs=17.3

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             999578876767899999999967764289829
Q gi|254780673|r  394 VTVEEGYPQSSVGSTIANQVQRKVFDYLDAPIL  426 (467)
Q Consensus       394 i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~  426 (467)
                      ++||-+...-....++..++.+++..|||+|+-
T Consensus        90 iiid~sT~~p~~~~~~~~~~~~~g~~~lDaPVs  122 (163)
T pfam03446        90 IIIDGSTISPDDTRRLAKELKEKGIRFLDAPVS  122 (163)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             898679899999999999875303443478776


No 212
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.30  E-value=4.1  Score=20.34  Aligned_cols=59  Identities=14%  Similarity=0.182  Sum_probs=28.9

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCC
Q ss_conf             5279733006857999999999871989999578876767899999999967764289829971777
Q gi|254780673|r  366 DAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRD  432 (467)
Q Consensus       366 ~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d  432 (467)
                      .+++|-|-...|=+.....+.+++.+.=+.+|=   .||+.-+=+....+-+-+     ..-++++-
T Consensus       213 g~DiI~LDnm~~~~~~~~v~~l~~~~~~v~iEa---SGgIn~~ni~~yA~tGVD-----~Is~galt  271 (285)
T PRK07428        213 GADIIMLDNMPVDQMQQAVQLIRQQNPRVKIEA---SGNITLETIRAVAETGVD-----YISTSAPI  271 (285)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHCCCC-----EEECCHHH
T ss_conf             999999879999999999999873089889999---899999999999974999-----99838310


No 213
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=73.04  E-value=6.9  Score=18.77  Aligned_cols=62  Identities=16%  Similarity=0.233  Sum_probs=29.8

Q ss_pred             HHHHCCCCCEECCCCCHHHHHHHH----HHHHHCC-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             475408111011666627899899----9988718-864456666-6789999999998788674211776788879983
Q gi|254780673|r  180 LLQEFGCERVIDTPITEHGFAGIG----IGASFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG  253 (467)
Q Consensus       180 l~~~fg~~R~~d~pi~E~~~~G~a----~G~A~~G-~~Piv~~~~-~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~  253 (467)
                      ++.-+.|.++++.+-.  +-+|.+    +|++++. -|||+.+.- ..|.|...+  +-.++        +.++|+++..
T Consensus        41 ~~~~~~p~~~~~s~~~--g~mG~glPaAiGaklA~Pdr~Vv~i~GDGsf~m~~~E--L~Ta~--------r~~lpii~vV  108 (202)
T cd02006          41 MLHVYKPRHWINCGQA--GPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEE--LAVGA--------QHRIPYIHVL  108 (202)
T ss_pred             HCCCCCCCEEECCCCC--CHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH--HHHHH--------HHCCCEEEEE
T ss_conf             5686899918658998--7033189999999987699859999768405512999--99999--------9699839999


No 214
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=72.99  E-value=6.9  Score=18.76  Aligned_cols=113  Identities=17%  Similarity=0.157  Sum_probs=55.9

Q ss_pred             HHHCCCCCEECCCCCHHHHHH----HHHHHHHCC-CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             754081110116666278998----999988718-86445666-667899999999987886742117767888799830
Q gi|254780673|r  181 LQEFGCERVIDTPITEHGFAG----IGIGASFAG-LKPIVEFM-TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP  254 (467)
Q Consensus       181 ~~~fg~~R~~d~pi~E~~~~G----~a~G~A~~G-~~Piv~~~-~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p  254 (467)
                      ..-.+|.|++..+-  .+.+|    .|+|++++- -||++.+. ...|.|...+  +..+++        .++|+++..-
T Consensus        35 ~~~~~p~~~~~s~~--~g~mG~~lpaAIGa~la~p~r~vv~i~GDG~f~m~~~E--L~Ta~~--------~~lpi~~iV~  102 (186)
T cd02015          35 YRFKKPRSWLTSGG--LGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNIQE--LATAAQ--------YNLPVKIVIL  102 (186)
T ss_pred             CCCCCCCEEECCCC--CCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHH--HHHHHH--------HCCCCEEEEE
T ss_conf             36189993984798--73566599999999986899818999767077503599--999998--------6699479999


Q ss_pred             CCCCCC-------------CCHHH-H--HHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE
Q ss_conf             244576-------------44443-3--2168876322031386652210001055565413783476
Q gi|254780673|r  255 NGAAAR-------------VAAQH-S--QCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF  306 (467)
Q Consensus       255 ~G~~~~-------------~g~~H-s--~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~  306 (467)
                      .-.+++             ...+. .  -++..+-. -=|..-..-.++.|++..|+.+++.++|++.
T Consensus       103 NN~~~g~i~~~q~~~~~~~~~~~~~~~~pd~~~iA~-a~G~~~~~v~~~~el~~al~~a~~~~gP~li  169 (186)
T cd02015         103 NNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAE-AYGIKGLRVEKPEELEAALKEALASDGPVLL  169 (186)
T ss_pred             ECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH-HCCCEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf             897068899999997289766656788877689999-7597699978999999999999848997999


No 215
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=72.84  E-value=4.1  Score=20.33  Aligned_cols=48  Identities=15%  Similarity=0.218  Sum_probs=22.3

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             2797330068579999999998719899995788767678999999999677
Q gi|254780673|r  367 AELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVF  418 (467)
Q Consensus       367 ~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f  418 (467)
                      +++|=|-...|=+.....+.++...++. +|   ..||+.-+=+....+-+-
T Consensus       202 ~D~I~LDn~~~~~~~~~v~~~~~~~~v~-ie---aSGgI~~~ni~~ya~~Gv  249 (269)
T cd01568         202 ADIIMLDNMSPEELKEAVKLLKGLPRVL-LE---ASGGITLENIRAYAETGV  249 (269)
T ss_pred             CCEEEECCCCHHHHHHHHHHHCCCCCEE-EE---EECCCCHHHHHHHHHCCC
T ss_conf             9999987989999999999847799859-99---989999999999997599


No 216
>pfam02666 PS_Dcarbxylase Phosphatidylserine decarboxylase. This is a family of phosphatidylserine decarboxylases, EC:4.1.1.65. These enzymes catalyse the reaction: Phosphatidyl-L-serine <= phosphatidylethanolamine + CO2. Phosphatidylserine decarboxylase plays a central role in the biosynthesis of aminophospholipids by converting phosphatidylserine to phosphatidylethanolamine.
Probab=72.58  E-value=7.1  Score=18.70  Aligned_cols=24  Identities=13%  Similarity=0.264  Sum_probs=14.8

Q ss_pred             EEEEECCCCCEEEEHHHHHHHHHH
Q ss_conf             144431687458602578888888
Q gi|254780673|r  332 ARIHRQGSDVTIISFGIGMTYATK  355 (467)
Q Consensus       332 ~~i~~~G~ditii~~G~~~~~a~~  355 (467)
                      ...+++|+.+-.+.+|+++-..++
T Consensus       155 g~~v~kG~e~G~f~fGStV~l~f~  178 (201)
T pfam02666       155 GDEVKKGDELGYFKFGSTVVLLFP  178 (201)
T ss_pred             CCEEECCCEEEEEECCCEEEEEEE
T ss_conf             979845748807962880999995


No 217
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=72.50  E-value=6.7  Score=18.83  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=31.6

Q ss_pred             ECCCCE-----EEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             537533-----34317778689899823788513269758999437
Q gi|254780673|r   40 ETDKAV-----MEVESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        40 ETDKat-----~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      .||.|-     +-|-+..+|.|.++.+.+. +.|.-|++|..|+..
T Consensus        43 ~TddAyv~~~vv~Iap~VsG~V~eV~V~dn-q~Vk~Gd~L~~iD~~   87 (352)
T COG1566          43 STDDAYVRADVVPIAPQVSGRVTEVNVKDN-QLVKKGDVLFRIDPR   87 (352)
T ss_pred             CCCCEEEEEEEEEECCCCCEEEEEEEECCC-CEECCCCEEEEECCH
T ss_conf             457669997799983767358999991689-885189768998957


No 218
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=72.41  E-value=2.3  Score=22.11  Aligned_cols=27  Identities=30%  Similarity=0.326  Sum_probs=15.0

Q ss_pred             EEEEEECCCCCEECCCCEEEEEECCCC
Q ss_conf             898774178976258985999953753
Q gi|254780673|r   18 NIAKWKKNEGDLIKQGDIIYEVETDKA   44 (467)
Q Consensus        18 ~i~~W~vk~GD~V~~gd~l~eiETDKa   44 (467)
                      +-=+-++++||.|+.||.|++..-|+.
T Consensus        87 egF~~~v~~Gd~Vk~Gd~Li~fDl~~I  113 (156)
T COG2190          87 EGFESLVKEGDKVKAGDPLLEFDLDLI  113 (156)
T ss_pred             CCEEEEEECCCEECCCCEEEEECHHHH
T ss_conf             324787507998815989899979999


No 219
>PRK10255 N-acetyl glucosamine specific PTS system components IIABC; Provisional
Probab=70.66  E-value=2.4  Score=21.95  Aligned_cols=10  Identities=30%  Similarity=0.288  Sum_probs=4.9

Q ss_pred             HHHCCCEEEE
Q ss_conf             9871989999
Q gi|254780673|r  387 VKKTGRLVTV  396 (467)
Q Consensus       387 v~kt~~~i~v  396 (467)
                      +|++|..=++
T Consensus       431 lK~~GA~Gvv  440 (648)
T PRK10255        431 CKRLGASGVV  440 (648)
T ss_pred             HHHCCCCEEE
T ss_conf             9866998599


No 220
>PRK08266 hypothetical protein; Provisional
Probab=70.39  E-value=7.9  Score=18.37  Aligned_cols=16  Identities=13%  Similarity=0.123  Sum_probs=10.2

Q ss_pred             CHHHHHHHHHHHHCCC
Q ss_conf             9899999999985020
Q gi|254780673|r  448 NVDEIIESVESICYKR  463 (467)
Q Consensus       448 ~~~~I~~av~~v~~~~  463 (467)
                      +.+++-+++++....+
T Consensus       497 ~~~el~~al~~a~~~~  512 (531)
T PRK08266        497 SPEELRAALEAALALG  512 (531)
T ss_pred             CHHHHHHHHHHHHHCC
T ss_conf             9999999999998289


No 221
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 protein; InterPro: IPR005695    Gram-negative bacteria have evolved transport complexes that export macromolecules and toxic substances such as heavy metals across the two membranes of the cell envelope in a single energy coupled step. The process requires (1) a cytoplasmic membrane export system, (2) a membrane fusion protein (MFP), and (3) an outer membrane factor. Phylogenetic analyses reveal that the MFPs cluster in accordance with the type of cytoplasmic membrane transport systems with which they function - proteins in this family are associated with reisistance to heavy metal poisoning. ; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport.
Probab=70.37  E-value=5.7  Score=19.32  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=27.9

Q ss_pred             EEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCC
Q ss_conf             3431777868989982378851326975899943777
Q gi|254780673|r   46 MEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGE   82 (467)
Q Consensus        46 ~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege   82 (467)
                      .||-||.+|.|.+-.+..| +-|.-++.+..|.+.+.
T Consensus       105 ~evrsP~~G~i~~k~v~~G-~~v~~~~~~f~~~~~~~  140 (284)
T TIGR00999       105 AEVRSPFDGYIVEKSVTLG-DYVAPQAELFRVADLGA  140 (284)
T ss_pred             HHHCCCCCCEEEEEEEECC-CCCCCCCCEEEEECCCE
T ss_conf             2211886878999974117-20068973377764716


No 222
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=70.33  E-value=7.9  Score=18.36  Aligned_cols=14  Identities=21%  Similarity=0.382  Sum_probs=7.1

Q ss_pred             CHHHHHHHHHHHHC
Q ss_conf             98999999999850
Q gi|254780673|r  448 NVDEIIESVESICY  461 (467)
Q Consensus       448 ~~~~I~~av~~v~~  461 (467)
                      +.+++-.++++.+.
T Consensus       494 ~~~el~~al~~A~~  507 (549)
T PRK06457        494 DPNELEEAIEEFLN  507 (549)
T ss_pred             CHHHHHHHHHHHHC
T ss_conf             99999999999981


No 223
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=70.04  E-value=8  Score=18.32  Aligned_cols=15  Identities=27%  Similarity=0.244  Sum_probs=10.6

Q ss_pred             HHHHHCCCEEEEEEC
Q ss_conf             763220313866522
Q gi|254780673|r  272 WYSHVPGLKVVIPYT  286 (467)
Q Consensus       272 ~~~~iPgl~V~~P~~  286 (467)
                      -++.-|||..++-|.
T Consensus       194 ~l~~PPGla~v~~S~  208 (383)
T COG0075         194 ALGAPPGLAFVAVSE  208 (383)
T ss_pred             HCCCCCCCCEEEECH
T ss_conf             115898614367779


No 224
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=69.96  E-value=2.3  Score=22.09  Aligned_cols=122  Identities=23%  Similarity=0.249  Sum_probs=61.6

Q ss_pred             CCHHHHCCC-CCEECCCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE--EE
Q ss_conf             364754081-110116666-27899899998871886445666667899999999987886742117767888799--83
Q gi|254780673|r  178 QGLLQEFGC-ERVIDTPIT-EHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF--RG  253 (467)
Q Consensus       178 ~gl~~~fg~-~R~~d~pi~-E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~--r~  253 (467)
                      ++|+...-. .-+.+.|.+ |..-+|.++|+.++|.||-.-.|..     .+-.-+|-.+.+. .+ -+++++|++  ||
T Consensus        31 k~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQns-----GlGNsiNal~SL~-~t-y~iPl~ml~ShRG  103 (172)
T COG4032          31 KNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNS-----GLGNSINALASLY-VT-YKIPLLMLASHRG  103 (172)
T ss_pred             HHHHHHHHCCCCCCCCCCCCHHCCEEEEHHHHHCCCCCEEEEECC-----CCCHHHHHHHHHH-HH-HCCCHHHHHHCCC
T ss_conf             758988754877564554201025021024554289967988436-----7316899999999-87-4223555201134


Q ss_pred             ECCCCCCCCHHHH--HHHHHHHHHHCCCEEEEEECCHHCCCHHHH----HHHCCCCEEEECC
Q ss_conf             0244576444433--216887632203138665221000105556----5413783476402
Q gi|254780673|r  254 PNGAAARVAAQHS--QCYAAWYSHVPGLKVVIPYTASDAKGLLKA----AIRDPNPVIFLEN  309 (467)
Q Consensus       254 p~G~~~~~g~~Hs--~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~----ai~~~~Pvi~le~  309 (467)
                      -.+-+.  -+|--  --...++. +=++--..|..|.+++.++..    +.+.-.||..|=+
T Consensus       104 ~~~E~i--~AQVpmGr~~~kiLe-~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls  162 (172)
T COG4032         104 VLKEGI--EAQVPMGRALPKILE-GLELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLS  162 (172)
T ss_pred             HHHCCC--CCCCCCCHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             130377--313642121589996-56886314578888887787899999871786599945


No 225
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=68.45  E-value=8.6  Score=18.09  Aligned_cols=156  Identities=17%  Similarity=0.104  Sum_probs=77.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC---CCEECCCCCHHHHHHHHHH
Q ss_conf             3100000000000000122355443113650699932434458866532364754081---1101166662789989999
Q gi|254780673|r  129 DSSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGC---ERVIDTPITEHGFAGIGIG  205 (467)
Q Consensus       129 ~~~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~---~R~~d~pi~E~~~~G~a~G  205 (467)
                      ..++.-....++|-.|++-++|.++.-+    .+||  |  +|+.   ...|.+..-.   =|++.+ --|++...+|-|
T Consensus        20 ~~~~~~~~~~~mtgae~lv~~L~~~GV~----~vFG--v--PG~~---~l~l~dal~~~~~i~~V~~-rhE~~A~~mAdg   87 (612)
T PRK07789         20 AGRPRHVAPEQMTGAQAVVRSLEELGVD----VVFG--I--PGGA---ILPVYDPLFDSTKLRHVLV-RHEQGAGHAAEG   87 (612)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCC----EEEE--C--CCCC---HHHHHHHHHCCCCCEEECC-CCHHHHHHHHHH
T ss_conf             7899888998524999999999987999----9997--9--8845---5999999753699649831-968999999999


Q ss_pred             HHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-CCC-CCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf             8871886445666667-899999999987886742117767888799830-244-5764444332168876322031386
Q gi|254780673|r  206 ASFAGLKPIVEFMTFN-FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP-NGA-AARVAAQHSQCYAAWYSHVPGLKVV  282 (467)
Q Consensus       206 ~A~~G~~Piv~~~~~~-f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p-~G~-~~~~g~~Hs~~~~~~~~~iPgl~V~  282 (467)
                      +|..--||=|.+-++. =.+.++.-|.+-     |.    -++||++-.. ... ..+.+.++..+...++..+--. ..
T Consensus        88 YAR~tG~~gv~~~t~GPG~~Na~~gla~A-----~~----d~~Pvl~I~G~~~~~~~g~~~~qe~d~~~~~~~vtk~-~~  157 (612)
T PRK07789         88 YAQATGRVGVCMATSGPGATNLVTPIADA-----NM----DSVPVVAITGQVGSGLIGTDAFQEADIVGITMPITKH-NF  157 (612)
T ss_pred             HHHHHCCCEEEEEECCCHHHHHHHHHHHH-----HH----HCCCEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHE-EE
T ss_conf             99997899899980681799999999999-----96----0998899968787543789987522488764334401-23


Q ss_pred             EEECCHHCCCHHHHHHH-----CCCCEEE
Q ss_conf             65221000105556541-----3783476
Q gi|254780673|r  283 IPYTASDAKGLLKAAIR-----DPNPVIF  306 (467)
Q Consensus       283 ~P~~~~d~~~ll~~ai~-----~~~Pvi~  306 (467)
                      ...++.++...+..|++     -++||..
T Consensus       158 ~v~~~~~i~~~l~~A~~~A~~grpGPV~i  186 (612)
T PRK07789        158 LVTRAEDIPRVIAEAFHIASTGRPGPVLV  186 (612)
T ss_pred             EECCHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             21899999999999999996189963899


No 226
>KOG1668 consensus
Probab=67.92  E-value=2.9  Score=21.42  Aligned_cols=14  Identities=29%  Similarity=0.261  Sum_probs=5.9

Q ss_pred             HHHCCCEEEEECCC
Q ss_conf             98719899995788
Q gi|254780673|r  387 VKKTGRLVTVEEGY  400 (467)
Q Consensus       387 v~kt~~~i~vee~~  400 (467)
                      ++|+.-.++|+++-
T Consensus       190 ikKlqi~~vveddk  203 (231)
T KOG1668         190 IKKLQIQCVVEDDK  203 (231)
T ss_pred             EEEEEEEEEEECCC
T ss_conf             03688999998375


No 227
>PRK12474 hypothetical protein; Provisional
Probab=67.85  E-value=8.8  Score=18.01  Aligned_cols=16  Identities=13%  Similarity=0.181  Sum_probs=10.2

Q ss_pred             CHHHHHHHHHHHHCCC
Q ss_conf             9899999999985020
Q gi|254780673|r  448 NVDEIIESVESICYKR  463 (467)
Q Consensus       448 ~~~~I~~av~~v~~~~  463 (467)
                      +.+++-.++++.+..+
T Consensus       494 ~~~el~~al~~Al~~~  509 (518)
T PRK12474        494 TAEEFSAQYAAAMAQR  509 (518)
T ss_pred             CHHHHHHHHHHHHCCC
T ss_conf             9999999999997399


No 228
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=67.71  E-value=8.9  Score=17.99  Aligned_cols=118  Identities=21%  Similarity=0.199  Sum_probs=60.1

Q ss_pred             CCHHHHCC--CCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             36475408--11101166662789989999887188644566666-7899999999987886742117767888799830
Q gi|254780673|r  178 QGLLQEFG--CERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTF-NFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP  254 (467)
Q Consensus       178 ~gl~~~fg--~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~-~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p  254 (467)
                      ..|.+.+.  .-|++.+- .|+..+++|.|++..+.||=+.+++. -=+..+++.|.|-     |+    -+.||++-..
T Consensus        24 ~~l~~~~~~~~i~~i~~~-~E~~A~~~A~g~~~~tg~~~v~~~~~gpG~~n~~~~l~~A-----~~----~~~Pvl~i~g   93 (155)
T cd07035          24 LPLLDALARSGIRYILVR-HEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANA-----YL----DSIPLLVITG   93 (155)
T ss_pred             HHHHHHHHHCCCEEEEEC-CHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-----HH----CCCCEEEEEC
T ss_conf             999998650798799878-7799999999999865997599982776888788999999-----98----3898089946


Q ss_pred             CCCCCC--CCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH----C-CCCEEE
Q ss_conf             244576--444433216887632203138665221000105556541----3-783476
Q gi|254780673|r  255 NGAAAR--VAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR----D-PNPVIF  306 (467)
Q Consensus       255 ~G~~~~--~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~-~~Pvi~  306 (467)
                      .-....  .+.+...+...+|..+- ....-..++.++...+..|++    . ++||.+
T Consensus        94 ~~~~~~~~~~~~q~~d~~~~~~~~~-k~~~~i~~~~~~~~~i~~A~~~a~s~~~gPv~l  151 (155)
T cd07035          94 QRPTAGEGRGAFQEIDQVALFRPIT-KWAYRVTSPEEIPEALRRAFRIALSGRPGPVAL  151 (155)
T ss_pred             CCCHHHHCCCCCCCCCHHHHCCCCC-CEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             8886772755654536476527766-325788999999999999999974598945899


No 229
>pfam07462 MSP1_C Merozoite surface protein 1 (MSP1) C-terminus. This family represents the C-terminal region of merozoite surface protein 1 (MSP1) which are found in a number of Plasmodium species. MSP-1 is a 200-kDa protein expressed on the surface of the P. vivax merozoite. MSP-1 of Plasmodium species is synthesized as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19-kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate.
Probab=67.52  E-value=4.9  Score=19.82  Aligned_cols=38  Identities=11%  Similarity=0.130  Sum_probs=25.1

Q ss_pred             EECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHH
Q ss_conf             93243445886653236475408111011666627899
Q gi|254780673|r  163 MGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFA  200 (467)
Q Consensus       163 ~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~  200 (467)
                      ||.|..+..-...|+.|=.+.=.|+-+..-+|+|-..+
T Consensus       339 f~~~ddd~ed~dQV~tGeae~~~~e~il~~~~neyevv  376 (574)
T pfam07462       339 FGNDDDDDEDLDQVATGEAESEEMKNILSAFKNEYDVI  376 (574)
T ss_pred             CCCCCCCCHHHHHHHCCCCCCCCHHHHHCCCCCCCEEE
T ss_conf             77886641033120016645655344202577733168


No 230
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878    This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=67.37  E-value=9  Score=17.95  Aligned_cols=150  Identities=19%  Similarity=0.146  Sum_probs=77.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHH
Q ss_conf             223332223322100000011233331000000000000-0012235544311365069993243445886653236475
Q gi|254780673|r  104 KNTTLVFSNEDNDKVDHQKSKNDIQDSSFAHAPTSSITV-REALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQ  182 (467)
Q Consensus       104 ~~~s~~~~~a~~~a~~~~~a~~~~~~~~~~~~~~~~~Tv-Rea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~  182 (467)
                      .......+.+.-+...--.+..+++..-.-.+....+.. .|-|-.++-|+           +||++..+          
T Consensus        54 ~~~~e~~~~~~l~~V~IlsTGGTIASrVDYeTGAV~P~ftAeel~~~~PEL-----------~~iAni~a----------  112 (413)
T TIGR02153        54 PPEEEIEKKPELPKVSILSTGGTIASRVDYETGAVKPAFTAEELARAVPEL-----------LEIANIKA----------  112 (413)
T ss_pred             CCHHHHCCCCCCCEEEEEECCCEEEEEEEEEECCCCCCCCHHHHHHHCCCH-----------HEECCCCE----------
T ss_conf             672430557788727999828878999730305600453989998617400-----------20124310----------


Q ss_pred             HCCCCCEECCCCCHH-------HHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             408111011666627-------899899998871886445-666667899999999987886742117767888799830
Q gi|254780673|r  183 EFGCERVIDTPITEH-------GFAGIGIGASFAGLKPIV-EFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP  254 (467)
Q Consensus       183 ~fg~~R~~d~pi~E~-------~~~G~a~G~A~~G~~Piv-~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p  254 (467)
                           |.+=.=+||+       .|.--.+..--.|-.=|| .|=|        |-.-..||=+.||.-..++.||||.  
T Consensus       113 -----~~~~niLSENMkP~~W~~IA~~V~~al~~G~~GVVvaHGT--------DTM~YTAaALSFm~~~Gl~~PvVlV--  177 (413)
T TIGR02153       113 -----RAVFNILSENMKPEYWIKIAEAVAKALEEGADGVVVAHGT--------DTMAYTAAALSFMFKTGLPVPVVLV--  177 (413)
T ss_pred             -----EEEEHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC--------CHHHHHHHHHHHHHHCCCCCCEEEE--
T ss_conf             -----5600010778885899999999999840899538994158--------7468999999999971699988998--


Q ss_pred             CCCCCCCCHHHH---------HHHH--HHHH---HHCCCEEEEEECCHHCCCHHHH
Q ss_conf             244576444433---------2168--8763---2203138665221000105556
Q gi|254780673|r  255 NGAAARVAAQHS---------QCYA--AWYS---HVPGLKVVIPYTASDAKGLLKA  296 (467)
Q Consensus       255 ~G~~~~~g~~Hs---------~~~~--~~~~---~iPgl~V~~P~~~~d~~~ll~~  296 (467)
                             |+|=|         .++.  ..++   -|=...|+|=.+.-|.+.++..
T Consensus       178 -------GAQRSSDRPSSDAa~NL~~A~~~A~~a~~aEV~VvMHG~tsD~yc~~HR  226 (413)
T TIGR02153       178 -------GAQRSSDRPSSDAALNLIAAVRAATSAPIAEVVVVMHGETSDTYCLVHR  226 (413)
T ss_pred             -------CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEC
T ss_conf             -------5743588873137999999999833697100388840124886799965


No 231
>TIGR02876 spore_yqfD sporulation protein YqfD; InterPro: IPR010690   This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown ..
Probab=66.88  E-value=3.8  Score=20.57  Aligned_cols=29  Identities=14%  Similarity=0.305  Sum_probs=18.7

Q ss_pred             EEEEECCCCCEEEEEEECCCCCCCCCCCE
Q ss_conf             33431777868989982378851326975
Q gi|254780673|r   45 VMEVESIDEGILGKILCPNGTKNVKVNTP   73 (467)
Q Consensus        45 t~EV~A~~~G~i~~ilv~eG~e~V~VG~~   73 (467)
                      -..+-|--||+|.++++..|+-.|..|+.
T Consensus       191 p~niVAkk~G~i~~~~v~~G~~~Vk~GD~  219 (406)
T TIGR02876       191 PRNIVAKKDGVIKRVYVTSGEAVVKKGDV  219 (406)
T ss_pred             CCCEEEECCEEEEEEEEECCEEEECCCCE
T ss_conf             72326633408888655111648548887


No 232
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=66.14  E-value=7  Score=18.73  Aligned_cols=12  Identities=42%  Similarity=0.415  Sum_probs=5.1

Q ss_pred             HHHCCCEEEEEC
Q ss_conf             987198999957
Q gi|254780673|r  387 VKKTGRLVTVEE  398 (467)
Q Consensus       387 v~kt~~~i~vee  398 (467)
                      |++-.-+.+++-
T Consensus       389 Vk~Gd~l~tiya  400 (435)
T COG0213         389 VKKGDPLATIYA  400 (435)
T ss_pred             ECCCCEEEEEEC
T ss_conf             026974799862


No 233
>pfam03358 FMN_red NADPH-dependent FMN reductase.
Probab=66.08  E-value=9.5  Score=17.78  Aligned_cols=27  Identities=41%  Similarity=0.433  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             888888887531004675279733006
Q gi|254780673|r  349 GMTYATKAAIELEKNGIDAELIDLRTI  375 (467)
Q Consensus       349 ~~~~a~~aa~~L~~~gi~~~vid~r~l  375 (467)
                      ....+....+.|.+.|+++++||++.+
T Consensus        16 t~~l~~~~~~~l~~~g~e~~~idl~~~   42 (147)
T pfam03358        16 TRKLAEWAAELLEEAGAEVELIDLADL   42 (147)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             999999999998776992599632334


No 234
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=65.94  E-value=9.6  Score=17.76  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=17.7

Q ss_pred             CCCCEEECCCCCCCCCCHHH-HHHCCCCHHHH-HHHHHHHHCCC
Q ss_conf             89829971777888889667-65608998999-99999985020
Q gi|254780673|r  422 DAPILTITGRDVPMPYAANL-EKLALPNVDEI-IESVESICYKR  463 (467)
Q Consensus       422 ~~p~~ri~~~d~p~P~~~~l-e~~~~p~~~~I-~~av~~v~~~~  463 (467)
                      ++++.+|-.-|+- |....+ .|..+.+...+ -++++++.+..
T Consensus       268 ~s~i~~ivvTnTi-~~~~~~~~ki~vlsva~llAeaI~rih~~~  310 (323)
T PRK02458        268 TAPIKEILVTDSV-KTKERVPKNVTYLSASELIAEAIIRIHERK  310 (323)
T ss_pred             CCCCCEEEECCCC-CCHHHCCCCCEEEEHHHHHHHHHHHHHCCC
T ss_conf             4998689985897-872244898889877999999999986799


No 235
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.93  E-value=5.7  Score=19.34  Aligned_cols=48  Identities=10%  Similarity=0.119  Sum_probs=26.0

Q ss_pred             CCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCC
Q ss_conf             85799999999987198999957887676789999999996776428982997177
Q gi|254780673|r  376 RPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGR  431 (467)
Q Consensus       376 ~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~  431 (467)
                      --|+.+.+.+.++.-+.=+.+|=   .||+.-+=+....+-+-|     ..-+++.
T Consensus       224 DNms~~~i~~av~~i~~~~~lEa---SGgI~~~ni~~yA~tGVD-----~IS~g~L  271 (290)
T PRK06559        224 DNMSLEQIEQAITLIAGRSRIEC---SGNIDMTTISRFRGLAID-----YVSSGSL  271 (290)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHCCCC-----EEECCHH
T ss_conf             79899999999998579679999---789989999999973999-----9988822


No 236
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=64.58  E-value=10  Score=17.59  Aligned_cols=108  Identities=15%  Similarity=0.168  Sum_probs=57.1

Q ss_pred             CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC--CCCCCCHH
Q ss_conf             1011666627899899998871886445666667-89999999998788674211776788879983024--45764444
Q gi|254780673|r  188 RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFN-FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNG--AAARVAAQ  264 (467)
Q Consensus       188 R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~-f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G--~~~~~g~~  264 (467)
                      |++.+. .||+..-+|.|+|..--||.+.+.+.. =+..++.-+.|-     |.    -+.||++-+..-  ...+.|..
T Consensus        37 ~~i~~~-hE~~A~~mA~gyar~tgkp~v~~~t~GPG~~N~~~gl~~A-----~~----d~~Pvl~itg~~~~~~~g~g~~  106 (162)
T cd07037          37 RLHVRV-DERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEA-----YY----SGVPLLVLTADRPPELRGTGAN  106 (162)
T ss_pred             EEEEEC-CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH-----HH----CCCCEEEEECCCCHHHCCCCCC
T ss_conf             699536-6778999999999987998799947883588888999987-----53----2998899968997886178988


Q ss_pred             HHHHHHHHHHHHCCCE--EEEEECCHH---CCCHHHHHHH-----CCCCEE
Q ss_conf             3321688763220313--866522100---0105556541-----378347
Q gi|254780673|r  265 HSQCYAAWYSHVPGLK--VVIPYTASD---AKGLLKAAIR-----DPNPVI  305 (467)
Q Consensus       265 Hs~~~~~~~~~iPgl~--V~~P~~~~d---~~~ll~~ai~-----~~~Pvi  305 (467)
                      +..+...+|+.+--..  |-.|.+..|   ...+++.|++     -++||.
T Consensus       107 Q~~dq~~l~~~itK~s~~v~~~~~~~~~~~i~~~l~~A~~~A~tg~pGPV~  157 (162)
T cd07037         107 QTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVH  157 (162)
T ss_pred             CCCCHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             643787773655207877688323655789999999999997189999689


No 237
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=62.12  E-value=11  Score=17.28  Aligned_cols=94  Identities=20%  Similarity=0.276  Sum_probs=43.4

Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCHHHHCCC--CCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             5544311365069993243445886-6532364754081--110116666278998999988718864456666678999
Q gi|254780673|r  149 AIAEEMRRDKDVFIMGEEVAEYQGA-YKVTQGLLQEFGC--ERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQ  225 (467)
Q Consensus       149 a~~e~m~~d~~~~~~gedv~~~~g~-f~~t~gl~~~fg~--~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~  225 (467)
                      .+...|+. -++++      |-|-. |+-|....++...  -+|+|+|+|=.     -.| |..|  |  .+|... --.
T Consensus        90 ~L~~~L~~-GDIII------D~GNs~~~dt~rr~~~l~~kgI~fld~GVSGG-----e~G-Ar~G--p--siMvGG-~~~  151 (474)
T PTZ00142         90 NILPHLEK-GDIII------DGGNEWYNNSERRIKLCKEKGILYIGMGVSGG-----EEG-ARYG--P--SLMPGG-NPY  151 (474)
T ss_pred             HHHHCCCC-CCEEE------ECCCCCHHHHHHHHHHHHHCCCCEECCCCCCC-----HHH-HHCC--C--EECCCC-CHH
T ss_conf             99850889-99898------79988865799999999857991864788843-----577-7339--8--213588-688


Q ss_pred             HHH---HHHHHH-HHHHHHCCCCCCCCE-EEEEECCCCCCCCHHHHH
Q ss_conf             999---999878-867421177678887-998302445764444332
Q gi|254780673|r  226 AID---QIINSA-AKTRYMSGGQITTSI-VFRGPNGAAARVAAQHSQ  267 (467)
Q Consensus       226 a~d---qi~n~~-ak~~~~~gg~~~~p~-v~r~p~G~~~~~g~~Hs~  267 (467)
                      +|+   +|+... ||    .++   -|. .+-||.|+++..=.-|..
T Consensus       152 a~~~v~Pileaiaak----~~~---~~c~~~~G~~GaGH~vKMVHNG  191 (474)
T PTZ00142        152 AYDHVKDIFQACSAK----VGD---SPCCDYVGPGSSGHYVKMVHNG  191 (474)
T ss_pred             HHHHHHHHHHHHHCC----CCC---CCCEEEECCCCCCHHHHHHCCC
T ss_conf             999876899997161----699---9871036898710310010354


No 238
>TIGR02013 rpoB DNA-directed RNA polymerase, beta subunit; InterPro: IPR010243   DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel.   RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise:  RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors.  RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs.  Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits.   This entry describes orthologues of the beta subunit of bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=61.28  E-value=4.4  Score=20.14  Aligned_cols=29  Identities=10%  Similarity=0.135  Sum_probs=18.0

Q ss_pred             CCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             1110116666278998999988718864456666
Q gi|254780673|r  186 CERVIDTPITEHGFAGIGIGASFAGLKPIVEFMT  219 (467)
Q Consensus       186 ~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~  219 (467)
                      +++|==|=+|=.-+|++|++|     .||.|+=.
T Consensus       724 ~~~VdyMDVSP~Q~VSVaAaL-----IPFLEHDD  752 (1449)
T TIGR02013       724 PDEVDYMDVSPKQIVSVAAAL-----IPFLEHDD  752 (1449)
T ss_pred             CCCEEEEEECCHHHHHHHHHC-----CCCCCCCH
T ss_conf             760247651832355665542-----63323541


No 239
>PRK02597 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=61.03  E-value=12  Score=17.16  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=29.0

Q ss_pred             EECCCCCEECCCCEEEEEE-------CCCCEEEEECCCCCEE
Q ss_conf             7417897625898599995-------3753334317778689
Q gi|254780673|r   22 WKKNEGDLIKQGDIIYEVE-------TDKAVMEVESIDEGIL   56 (467)
Q Consensus        22 W~vk~GD~V~~gd~l~eiE-------TDKat~EV~A~~~G~i   56 (467)
                      .+|+.|+.|+.+|+|+||-       |+|+.-+|-|..+|-+
T Consensus       410 L~V~n~q~V~~~qvIAEi~a~~~~~~~Ek~~K~I~sd~~GEv  451 (1295)
T PRK02597        410 LFVDDGQTVEADQTLAEIAAGAVKKSTEKATKDVICDLAGEV  451 (1295)
T ss_pred             EEEECCCEEECCCEEEEEECCCCCCCEEEEEEEEEECCCCEE
T ss_conf             999899698427389999537631112666322672577559


No 240
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=60.54  E-value=12  Score=17.10  Aligned_cols=105  Identities=22%  Similarity=0.274  Sum_probs=50.3

Q ss_pred             CCCCCHH--HHHHHHHHHHHCCCCCHHHHHHH-HH-HHH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC-HH
Q ss_conf             1666627--89989999887188644566666-78-999-9999998788674211776788879983024457644-44
Q gi|254780673|r  191 DTPITEH--GFAGIGIGASFAGLKPIVEFMTF-NF-AMQ-AIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVA-AQ  264 (467)
Q Consensus       191 d~pi~E~--~~~G~a~G~A~~G~~Piv~~~~~-~f-~~~-a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g-~~  264 (467)
                      +.+|.-|  ..+|.|-.+-+.|.+.-|.+-+| |= ..+ .|-.-+|-|+-        +++|+||..-+-. |..+ +.
T Consensus       135 ~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v--------~klPvvf~ieNN~-yAiSvp~  205 (358)
T COG1071         135 SGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAV--------WKLPVVFVIENNQ-YAISVPR  205 (358)
T ss_pred             CCEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHH--------HCCCEEEEEECCC-CEEECCH
T ss_conf             840466534799999999974899818999945786553339999899998--------5698799996687-1670456


Q ss_pred             HHHHHHHHHH------HHCCCEEEEEECCHHCCCHH---HHH----HHCCCCEEEECC
Q ss_conf             3321688763------22031386652210001055---565----413783476402
Q gi|254780673|r  265 HSQCYAAWYS------HVPGLKVVIPYTASDAKGLL---KAA----IRDPNPVIFLEN  309 (467)
Q Consensus       265 Hs~~~~~~~~------~iPgl~V~~P~~~~d~~~ll---~~a----i~~~~Pvi~le~  309 (467)
                      ..|+-...++      .|||++|    |..|.-.++   +.|    .+-.+|+++ |.
T Consensus       206 ~~q~~~~~~~~ra~aygipgv~V----DG~D~~avy~~~~~A~e~AR~g~GPtLI-E~  258 (358)
T COG1071         206 SRQTAAEIIAARAAAYGIPGVRV----DGNDVLAVYEAAKEAVERARAGEGPTLI-EA  258 (358)
T ss_pred             HHCCCCHHHHHHHHCCCCCEEEE----CCCCHHHHHHHHHHHHHHHHCCCCCEEE-EE
T ss_conf             64033246775501058872787----7977999999999999999748998899-99


No 241
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=60.45  E-value=12  Score=17.09  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=14.1

Q ss_pred             CEEEEHHHHHHHHHHHHHHHHCCCC
Q ss_conf             4586025788888888753100467
Q gi|254780673|r  341 VTIISFGIGMTYATKAAIELEKNGI  365 (467)
Q Consensus       341 itii~~G~~~~~a~~aa~~L~~~gi  365 (467)
                      .+-++||.+.+.|.-++.-...-||
T Consensus       611 AcgvAWGaySqkaasiatG~nr~GI  635 (772)
T COG1152         611 ACGVAWGAYSQKAASIATGCNRWGI  635 (772)
T ss_pred             EEEEEEHHHHHHHHHHHCCCCCCCC
T ss_conf             0478400344788988628631177


No 242
>PRK08617 acetolactate synthase; Reviewed
Probab=60.38  E-value=12  Score=17.08  Aligned_cols=17  Identities=12%  Similarity=0.092  Sum_probs=10.1

Q ss_pred             CCHHHHHHHHHHHHCCC
Q ss_conf             99899999999985020
Q gi|254780673|r  447 PNVDEIIESVESICYKR  463 (467)
Q Consensus       447 p~~~~I~~av~~v~~~~  463 (467)
                      -+.+++-+++++....+
T Consensus       510 ~~~~eL~~al~~A~~~~  526 (552)
T PRK08617        510 TSPDELEPVLKEALATD  526 (552)
T ss_pred             CCHHHHHHHHHHHHHCC
T ss_conf             99999999999998189


No 243
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component; InterPro: IPR010199   This entry describes an NADPH-dependent sulphite reductase flavoprotein subunit. Most members of the proteins of this entry are found in Cys biosynthesis gene clusters. The closest homologues are designated as subunits nitrate reductase.; GO: 0004783 sulfite reductase (NADPH) activity, 0000103 sulfate assimilation, 0019344 cysteine biosynthetic process.
Probab=60.31  E-value=12  Score=17.07  Aligned_cols=93  Identities=20%  Similarity=0.248  Sum_probs=53.3

Q ss_pred             CCCCCEEEEHHHHHHHHHHHH-----HHHH--------CCCCCEEEEECCC--CCC--CCH--HHHHHHHHH-CCCE---
Q ss_conf             168745860257888888887-----5310--------0467527973300--685--799--999999987-1989---
Q gi|254780673|r  337 QGSDVTIISFGIGMTYATKAA-----IELE--------KNGIDAELIDLRT--IRP--MDW--QTIFESVKK-TGRL---  393 (467)
Q Consensus       337 ~G~ditii~~G~~~~~a~~aa-----~~L~--------~~gi~~~vid~r~--l~P--ld~--~~i~~sv~k-t~~~---  393 (467)
                      .-..+|-++=.-.-..|.-+.     +++.        .-=.+..||||-.  =.|  .++  +.++..+++ |=||   
T Consensus       340 ~~fELT~~t~~~~~~yA~~~~~~~L~~l~~P~~~~~L~~y~~~~~~~D~~~ny~~Pap~~l~a~~li~lLRPL~PRLYSI  419 (628)
T TIGR01931       340 SHFELTQLTKPLVKAYAELTGNEELKALIAPEDKEKLKAYIANTPLVDLVRNYDYPAPADLDAEQLISLLRPLTPRLYSI  419 (628)
T ss_pred             HCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf             05760104878999999876563107560787558999997359878997224789986359799999747788511218


Q ss_pred             ------------EEEEC-------CCCCCCHHHHHHHHHHHHH-----------HH---HCCCCCEEEC
Q ss_conf             ------------99957-------8876767899999999967-----------76---4289829971
Q gi|254780673|r  394 ------------VTVEE-------GYPQSSVGSTIANQVQRKV-----------FD---YLDAPILTIT  429 (467)
Q Consensus       394 ------------i~vee-------~~~~gg~g~~i~~~i~e~~-----------f~---~L~~p~~ri~  429 (467)
                                  |||..       ..+.||-++-+++++.+..           |.   .-|.||+-||
T Consensus       420 aSSq~ev~dEVHlTVg~V~y~~~G~~r~GgaS~fLA~rl~~gd~v~vyve~N~nFRLP~d~dtPiIMIG  488 (628)
T TIGR01931       420 ASSQAEVDDEVHLTVGVVRYEAEGRARLGGASGFLAERLEEGDTVKVYVERNDNFRLPEDPDTPIIMIG  488 (628)
T ss_pred             HHHHHHCCCEEEEEEEEEEEEECCEEEECCCHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEC
T ss_conf             889865688068876688982056477441057788650889767788751778888888897878736


No 244
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=60.22  E-value=12  Score=17.06  Aligned_cols=36  Identities=17%  Similarity=0.236  Sum_probs=30.1

Q ss_pred             EEECCCCCEECCCCEEEEEE--------CCCCEEEEECCCCCEE
Q ss_conf             77417897625898599995--------3753334317778689
Q gi|254780673|r   21 KWKKNEGDLIKQGDIIYEVE--------TDKAVMEVESIDEGIL   56 (467)
Q Consensus        21 ~W~vk~GD~V~~gd~l~eiE--------TDKat~EV~A~~~G~i   56 (467)
                      =.+|+.|+.|+.+|+|+|+-        ++|+.-+|-|..+|-+
T Consensus       408 lL~V~n~q~V~s~QvIAEi~~~~~~~~~~Ek~~K~i~S~~~GEv  451 (1350)
T CHL00117        408 LLLVQNDQYVESEQVIAEIRAGTSTLKFKEKVRKHIYSDSEGEM  451 (1350)
T ss_pred             EEEEECCCEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCCCE
T ss_conf             89998995875161899970577755453058877754886426


No 245
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=59.78  E-value=12  Score=17.01  Aligned_cols=16  Identities=6%  Similarity=0.067  Sum_probs=10.7

Q ss_pred             CHHHHHHHHHHHHCCC
Q ss_conf             9899999999985020
Q gi|254780673|r  448 NVDEIIESVESICYKR  463 (467)
Q Consensus       448 ~~~~I~~av~~v~~~~  463 (467)
                      +.+++-.++++.+..+
T Consensus       518 ~~~el~~al~~al~~~  533 (564)
T PRK08155        518 NEADPQAALQEAINRP  533 (564)
T ss_pred             CHHHHHHHHHHHHCCC
T ss_conf             9999999999997589


No 246
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=58.32  E-value=13  Score=16.84  Aligned_cols=14  Identities=36%  Similarity=0.313  Sum_probs=7.8

Q ss_pred             CEEEEECCCCCCCC
Q ss_conf             52797330068579
Q gi|254780673|r  366 DAELIDLRTIRPMD  379 (467)
Q Consensus       366 ~~~vid~r~l~Pld  379 (467)
                      +++|||..+.-|.-
T Consensus        36 ~v~vid~Gt~~~~l   49 (160)
T COG0680          36 NVEVIDGGTAGPNL   49 (160)
T ss_pred             CEEEEECCCCCHHH
T ss_conf             73899768770889


No 247
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=57.93  E-value=13  Score=16.80  Aligned_cols=40  Identities=28%  Similarity=0.253  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCC
Q ss_conf             88888875310046752797330068579999999998719
Q gi|254780673|r  351 TYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTG  391 (467)
Q Consensus       351 ~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~  391 (467)
                      ..|.+|.+-|.++||+.+.+|++ -.|++.+.|.+.+++.|
T Consensus        10 stcrkA~k~L~~~~i~~~~~d~~-~~p~~~~el~~~~~~~G   49 (105)
T cd03035          10 DTVKKARKWLEARGVAYTFHDYR-KDGLDAATLERWLAKVG   49 (105)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEE-CCCCCHHHHHHHHHHCC
T ss_conf             78999999999879980899756-78989999999998679


No 248
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=57.33  E-value=13  Score=16.73  Aligned_cols=111  Identities=21%  Similarity=0.322  Sum_probs=68.6

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             00000000122355443113650699932434458866532364754081110116666278998999988718864456
Q gi|254780673|r  137 TSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE  216 (467)
Q Consensus       137 ~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~  216 (467)
                      .+..+=-|.-|-|++.++.+||.+.++.|=          |-|| |-|-.          +..|-+==+||..|..-|+.
T Consensus       173 ~KGlSGGErKRLafA~E~ltdP~~LFcDEP----------TSGL-DSfmA----------~~Vv~~L~~LA~~G~tiI~t  231 (671)
T TIGR00955       173 VKGLSGGERKRLAFASELLTDPIILFCDEP----------TSGL-DSFMA----------YSVVQVLKGLAQKGKTIICT  231 (671)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEECCC----------CCHH-HHHHH----------HHHHHHHHHHHCCCCEEEEE
T ss_conf             455201136789988788718942650388----------9534-59999----------99999999985089799998


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCHHC
Q ss_conf             -666678999999999878867421177678887998302445764444332168876322-03138665221000
Q gi|254780673|r  217 -FMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHV-PGLKVVIPYTASDA  290 (467)
Q Consensus       217 -~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~i-Pgl~V~~P~~~~d~  290 (467)
                       ||--.=++.-||||       ..|+.|+    ++++|        -|+|+   -.+|+.+ |...+=.-.||+|.
T Consensus       232 IHQPSs~lF~lFd~i-------~lla~Gr----vvy~G--------~p~~a---~~FF~~~Gpd~~cP~~yNPADF  285 (671)
T TIGR00955       232 IHQPSSELFELFDKI-------ILLAEGR----VVYLG--------SPDQA---VPFFSELGPDFPCPENYNPADF  285 (671)
T ss_pred             EECCCHHHHHHHCCE-------EEEECCE----EEEEC--------CCHHH---HHHHHHCCCCCCCCCCCCCHHH
T ss_conf             305618898511716-------7752772----79827--------81036---8989844888789788888889


No 249
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=55.65  E-value=14  Score=16.55  Aligned_cols=26  Identities=35%  Similarity=0.077  Sum_probs=14.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             66278998999988718864456666
Q gi|254780673|r  194 ITEHGFAGIGIGASFAGLKPIVEFMT  219 (467)
Q Consensus       194 i~E~~~~G~a~G~A~~G~~Piv~~~~  219 (467)
                      -.||+...+|-|+|..--||=|.+-+
T Consensus        67 rhE~~A~~aAdGYAR~tGk~gv~~~T   92 (615)
T PRK07418         67 RHEQGAAHAADGYARATGKVGVCFGT   92 (615)
T ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             97899999999999997999899964


No 250
>TIGR00072 hydrog_prot hydrogenase maturation protease; InterPro: IPR000671   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised . More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin  and archaean preflagellin have been described , .   Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure.   Metalloproteases are the most diverse of the four main types of protease, with more than 30 families identified to date . In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as abXHEbbHbc, where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesized as a precursor devoid of the metalloenzyme active site. This precursor undergoes a complex post-translational maturation process that requires a number of accessory proteins , , . At one step of this process, after nickel incorporation, each hydrogenase isoenzyme is processed by proteolytic cleavage at the C-terminal end by the corresponding hydrogenase maturation endopeptidase . For example, Escherichia coli HycI is involved in processing of pre-HycE (the large subunit of hydrogenase 3) , ; HybD is involved in processing of pre-HybC (the large subunit of hydrogenase 2) ; and HyaD is assumed to be involved in processing of the large subunit of hydrogenase 1. This group represents metallopeptidases of the MEROPS peptidase family A31 (HybD endopeptidase family, clan AE).   The cleavage site is after a His or an Arg, liberating a short peptide , . This cleavage occurs only in the presence of nickel, and the endopeptidase probably uses the metal in the large subunit of [NiFe]-hydrogenases as a recognition motif . There is no direct evidence for the active site or substrate-binding site, but there are predictions based on an available structure .   Nomenclature note: the following names are used in different organisms for members of this group: HycI, HybD, HyaD, HoxM, HoxW, HupD, HynC, HupM, VhoD, VhtD . Gene/protein names are sometimes used interchangeably to designate various "hydrogenase cluster" proteins unrelated to each other in various organisms. For example, the following names are used for members of this group, but also for unrelated proteins: HupD is used in Azotobacter chroococcum and Anabaena sp. to designate an unrelated hydrogenase maturation factor; HydD is used to designate hydrogenase structural genes in Thermococcus litoralis, Pyrococcus abyssi, and other species.; GO: 0008047 enzyme activator activity, 0008233 peptidase activity.
Probab=54.86  E-value=15  Score=16.46  Aligned_cols=30  Identities=17%  Similarity=0.086  Sum_probs=13.8

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             52797330068579999999998719899995
Q gi|254780673|r  366 DAELIDLRTIRPMDWQTIFESVKKTGRLVTVE  397 (467)
Q Consensus       366 ~~~vid~r~l~Pld~~~i~~sv~kt~~~i~ve  397 (467)
                      +++|||.-|.-+-....|. +. +++|+|+||
T Consensus        39 nv~~iDgGt~g~~l~~~l~-~~-~~~~~iivD   68 (170)
T TIGR00072        39 NVEVIDGGTGGLDLLGLLE-EA-DPKKVIIVD   68 (170)
T ss_pred             EEEEEECCCCCHHHHHHHH-HC-CCCEEEEEE
T ss_conf             2899806657866788774-15-885789997


No 251
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level HMM (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=54.71  E-value=15  Score=16.44  Aligned_cols=15  Identities=33%  Similarity=0.487  Sum_probs=10.3

Q ss_pred             HHHHHHCCCEEEEEE
Q ss_conf             876322031386652
Q gi|254780673|r  271 AWYSHVPGLKVVIPY  285 (467)
Q Consensus       271 ~~~~~iPgl~V~~P~  285 (467)
                      ..++..|||.++.-+
T Consensus       187 K~l~~ppGl~~v~~~  201 (355)
T TIGR03301       187 KCLEGVPGFGFVIAR  201 (355)
T ss_pred             CCCCCCCCEEEEEEC
T ss_conf             556788875788866


No 252
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=54.44  E-value=15  Score=16.42  Aligned_cols=97  Identities=20%  Similarity=0.185  Sum_probs=59.5

Q ss_pred             CCEEEEHHHHHHHHHHHHHHHH---CCC-CCEEEEECCCCCCCCHHH---------HHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf             7458602578888888875310---046-752797330068579999---------999998719899995788767678
Q gi|254780673|r  340 DVTIISFGIGMTYATKAAIELE---KNG-IDAELIDLRTIRPMDWQT---------IFESVKKTGRLVTVEEGYPQSSVG  406 (467)
Q Consensus       340 ditii~~G~~~~~a~~aa~~L~---~~g-i~~~vid~r~l~Pld~~~---------i~~sv~kt~~~i~vee~~~~gg~g  406 (467)
                      |+-|=---+.+..|+..|+.+-   .+| |.-.-+-=.+|-|-...-         -.+++-+-+|+|+||++...|--.
T Consensus       285 DvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDDSIVRGTTs  364 (470)
T COG0034         285 DVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDDSIVRGTTS  364 (470)
T ss_pred             CEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCH
T ss_conf             57983498876899999998399655552102324346668867887750303037017885897699972651457669


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCCH
Q ss_conf             999999999677642898299717778--888896
Q gi|254780673|r  407 STIANQVQRKVFDYLDAPILTITGRDV--PMPYAA  439 (467)
Q Consensus       407 ~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~~  439 (467)
                      ..|...+-+-+-.   ---.|+++|.+  |++|+-
T Consensus       365 r~IV~mlReAGAk---EVHvriasP~i~~Pc~YGI  396 (470)
T COG0034         365 RRIVQMLREAGAK---EVHVRIASPPIRYPCFYGI  396 (470)
T ss_pred             HHHHHHHHHHCCC---EEEEEECCCCCCCCCCCCC
T ss_conf             9999999971887---8899842897567786645


No 253
>pfam02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
Probab=53.64  E-value=15  Score=16.33  Aligned_cols=111  Identities=18%  Similarity=0.144  Sum_probs=50.4

Q ss_pred             CCCCEECCCCCH--HHHHHHHHHHHHCC-CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             811101166662--78998999988718-86445666-667899999999987886742117767888799830244576
Q gi|254780673|r  185 GCERVIDTPITE--HGFAGIGIGASFAG-LKPIVEFM-TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR  260 (467)
Q Consensus       185 g~~R~~d~pi~E--~~~~G~a~G~A~~G-~~Piv~~~-~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~  260 (467)
                      .|.|++..+-.-  -.-++.|+|++++- -|+++.+. ...|.+..  |=+..+++        .++|+++..-.-..++
T Consensus        17 ~p~~~~~~~~~g~mG~~~p~AiGa~~a~p~~~vi~i~GDG~f~~~~--~el~Ta~~--------~~~~i~~iv~nN~~yg   86 (150)
T pfam02775        17 PPRRYLTSGGLGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQMNG--QELATAVR--------YNLPITVVVLNNGGYG   86 (150)
T ss_pred             CCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHCCC--CHHHHHHH--------HCCCCCEEEEECCHHH
T ss_conf             9990884898732322899999999978998499998897211134--37999998--------4888568999764258


Q ss_pred             C-----------------CHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE
Q ss_conf             4-----------------444332168876322031386652210001055565413783476
Q gi|254780673|r  261 V-----------------AAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF  306 (467)
Q Consensus       261 ~-----------------g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~  306 (467)
                      .                 ...+.-++..+-... |.....-.+..|.+..++.+++.++|+++
T Consensus        87 ~~~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gP~~i  148 (150)
T pfam02775        87 MTRGQQTPFGGKRYSGPDGDLPPVDFAKLAEAY-GAKGARVESPEELEEALKEALAHDGPALI  148 (150)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf             889998874299745656788887899999985-98699978999999999999828999899


No 254
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=53.34  E-value=15  Score=16.30  Aligned_cols=19  Identities=26%  Similarity=0.274  Sum_probs=8.3

Q ss_pred             CHHHHHHHHHHHHHCCCCC
Q ss_conf             6278998999988718864
Q gi|254780673|r  195 TEHGFAGIGIGASFAGLKP  213 (467)
Q Consensus       195 ~E~~~~G~a~G~A~~G~~P  213 (467)
                      -|++...+|-|+|...-||
T Consensus        58 hE~~A~~mAdgyar~tg~~   76 (568)
T PRK08327         58 HEIVAIAMAIGYALGTGKP   76 (568)
T ss_pred             CHHHHHHHHHHHHHHHCCC
T ss_conf             6899999999999985998


No 255
>TIGR00354 polC DNA polymerase II, large subunit DP2; InterPro: IPR004475 This family represents the large subunit, DP2, of a two subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0006308 DNA catabolic process.
Probab=53.18  E-value=9  Score=17.95  Aligned_cols=109  Identities=23%  Similarity=0.263  Sum_probs=65.8

Q ss_pred             CEEEEECCCCCCC-CCCCCCCCHHHHC-CCCCEECCCCCHHHHHHHHHHHHH------CC----CCCHH---HHHHH---
Q ss_conf             0699932434458-8665323647540-811101166662789989999887------18----86445---66666---
Q gi|254780673|r  159 DVFIMGEEVAEYQ-GAYKVTQGLLQEF-GCERVIDTPITEHGFAGIGIGASF------AG----LKPIV---EFMTF---  220 (467)
Q Consensus       159 ~~~~~gedv~~~~-g~f~~t~gl~~~f-g~~R~~d~pi~E~~~~G~a~G~A~------~G----~~Piv---~~~~~---  220 (467)
                      +|+ +-||.|+|- -|=+.-..|++|| .=+||+|+=--|.-+=.+-+|||=      -|    |--+.   .|-+|   
T Consensus       842 DVi-ipescAeYlvrVANFiDDLLekFYk~ErFYNvK~~EDLiGHLviGlAPHTSAgvlGRIIGft~a~agYAHPYFHaA  920 (1173)
T TIGR00354       842 DVI-IPESCAEYLVRVANFIDDLLEKFYKLERFYNVKKKEDLIGHLVIGLAPHTSAGVLGRIIGFTDASAGYAHPYFHAA  920 (1173)
T ss_pred             CEE-ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHCCEEEECCCCEECCCCCHHHC
T ss_conf             167-4671201265454356577787632576436664324100121015730001232000211462100247650201


Q ss_pred             ---------HHHHHHHHHHHHHHHHHH-HHCCCCCCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf             ---------789999999998788674-211776788879983024457644443321
Q gi|254780673|r  221 ---------NFAMQAIDQIINSAAKTR-YMSGGQITTSIVFRGPNGAAARVAAQHSQC  268 (467)
Q Consensus       221 ---------~f~~~a~dqi~n~~ak~~-~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~  268 (467)
                               |-.|+=+|-+.|---|+. ---|||+++|+|+-+..-.-==++-.|..+
T Consensus       921 KRRNCDgDEDsfmLLLDalLNFSkkfLPdkRGGqMDAPLVLtti~DP~EvD~EvHN~D  978 (1173)
T TIGR00354       921 KRRNCDGDEDSFMLLLDALLNFSKKFLPDKRGGQMDAPLVLTTIVDPKEVDDEVHNMD  978 (1173)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHCCCCCCCCH
T ss_conf             3568896056899999888732365477878797563245301247033087636602


No 256
>PRK07064 hypothetical protein; Provisional
Probab=53.13  E-value=16  Score=16.28  Aligned_cols=14  Identities=7%  Similarity=0.088  Sum_probs=6.5

Q ss_pred             CHHHHHHHHHHHHC
Q ss_conf             98999999999850
Q gi|254780673|r  448 NVDEIIESVESICY  461 (467)
Q Consensus       448 ~~~~I~~av~~v~~  461 (467)
                      +.+++-+++++-+.
T Consensus       503 ~~~eL~~al~~A~~  516 (544)
T PRK07064        503 SADDFEAVLREALA  516 (544)
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             99999999999982


No 257
>TIGR03257 met_CoM_red_bet methyl-coenzyme M reductase, beta subunit. Members of this protein family are the beta subunit of methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). This enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes.
Probab=52.94  E-value=13  Score=16.77  Aligned_cols=12  Identities=25%  Similarity=-0.233  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             888888887531
Q gi|254780673|r  349 GMTYATKAAIEL  360 (467)
Q Consensus       349 ~~~~a~~aa~~L  360 (467)
                      +.+.|..||-.|
T Consensus       297 ~lWNAYaaAG~~  308 (433)
T TIGR03257       297 PKWNAYAAAGLV  308 (433)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999987778


No 258
>pfam01551 Peptidase_M23 Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins, for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.
Probab=52.42  E-value=11  Score=17.37  Aligned_cols=68  Identities=19%  Similarity=0.222  Sum_probs=38.5

Q ss_pred             EEEECCCCCC---CCCEEEEEEEECCCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf             3566788888---8115789877417897625898599995375333431777868989982378851326975899943
Q gi|254780673|r    3 ILVTMPSLSP---TMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQ   79 (467)
Q Consensus         3 ~ei~mP~lge---sm~eG~i~~W~vk~GD~V~~gd~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~   79 (467)
                      ++|..|. |.   ++..|+|..+--..+     .--.+.|+.+.-..-+-    +-|.++.++.|+ .|..|++|+.+..
T Consensus         6 iDi~~~~-G~~V~A~~~G~V~~~~~~~~-----~G~~v~i~h~~g~~~~Y----~hl~~~~V~~G~-~V~~G~~IG~~G~   74 (96)
T pfam01551         6 IDIAAPT-GTPVYAAADGVVVFAGYLGG-----YGNLVIIDHGNGYETLY----AHLSKILVKVGQ-RVKAGQVIGTVGS   74 (96)
T ss_pred             EEECCCC-CCEEEEEECEEEEEEEECCC-----CCEEEEEEECCCCEEEE----CCCEEEEECCCC-CHHHCCEEEEECC
T ss_conf             9846589-99899623679999898399-----88599999389876998----364467795898-9013999998678


Q ss_pred             CC
Q ss_conf             77
Q gi|254780673|r   80 EG   81 (467)
Q Consensus        80 eg   81 (467)
                      .+
T Consensus        75 sg   76 (96)
T pfam01551        75 TG   76 (96)
T ss_pred             CC
T ss_conf             99


No 259
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=51.62  E-value=16  Score=16.12  Aligned_cols=118  Identities=14%  Similarity=0.023  Sum_probs=61.2

Q ss_pred             CCHHHHC---CCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             3647540---8111011666627899899998871886445666667899999999987886742117767888799830
Q gi|254780673|r  178 QGLLQEF---GCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP  254 (467)
Q Consensus       178 ~gl~~~f---g~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p  254 (467)
                      ..|.+.+   +.-|++.+- .|++...+|-|+|...-||-+.+-+.   ..+.-..++.++.- |+    -+.||++-..
T Consensus        27 ~~l~~al~~~~~i~~i~~r-hE~~A~~mA~gyar~tg~~gv~~~t~---GpG~tN~~~gl~~A-~~----~~~Pll~i~g   97 (164)
T cd07039          27 NGLMDALRREGKIEFIQVR-HEEAAAFAASAEAKLTGKLGVCLGSS---GPGAIHLLNGLYDA-KR----DRAPVLAIAG   97 (164)
T ss_pred             HHHHHHHHHCCCCEEEEEC-CHHHHHHHHHHHHHHHCCCEEEEEEC---CCHHHHHHHHHHHH-HH----CCCCEEEEEC
T ss_conf             9999999865997399548-78999999999999979987999842---82388899999999-98----5897799966


Q ss_pred             CCC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH----CCCCEE
Q ss_conf             244--576444433216887632203138665221000105556541----378347
Q gi|254780673|r  255 NGA--AARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR----DPNPVI  305 (467)
Q Consensus       255 ~G~--~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~----~~~Pvi  305 (467)
                      .-.  ..+.+.++.-+...+|..+--.. ....++.++...++.|++    ..+||.
T Consensus        98 ~~~~~~~~~~~~Q~~d~~~~~~~~tK~~-~~v~~~~~~~~~~~~A~~~A~~~~GPV~  153 (164)
T cd07039          98 QVPTDELGTDYFQEVDLLALFKDVAVYN-ETVTSPEQLPELLDRAIRTAIAKRGVAV  153 (164)
T ss_pred             CCCHHHCCCCCCCCCCHHHHHHHHHCEE-EECCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             7755434899874274999989974578-8859999999999999998540899999


No 260
>pfam11160 DUF2945 Protein of unknown function (DUF2945). This family of proteins has no known function.
Probab=51.61  E-value=16  Score=16.11  Aligned_cols=34  Identities=29%  Similarity=0.445  Sum_probs=27.0

Q ss_pred             CCCCCEEEEEEEECCCCCE------ECCCCEEEEEECCCC
Q ss_conf             8881157898774178976------258985999953753
Q gi|254780673|r   11 SPTMTEGNIAKWKKNEGDL------IKQGDIIYEVETDKA   44 (467)
Q Consensus        11 gesm~eG~i~~W~vk~GD~------V~~gd~l~eiETDKa   44 (467)
                      ..+.+.|+|.+-+-++.+.      -+.||+=+|||+||.
T Consensus         9 ~~g~~~G~V~~~~T~~~~~~G~~v~AS~ddPqYeV~SdkT   48 (62)
T pfam11160         9 EAGEVSGKIVKVHTEDTEYKGRTVRASEDDPQYEVESDKT   48 (62)
T ss_pred             CCCEEEEEEEEEECCCCEECCEEEECCCCCCEEEEEECCC
T ss_conf             9966868999998377288885876797898489885687


No 261
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=51.54  E-value=16  Score=16.11  Aligned_cols=14  Identities=21%  Similarity=0.562  Sum_probs=9.7

Q ss_pred             CCCCHHHHHHCCCC
Q ss_conf             88896676560899
Q gi|254780673|r  435 MPYAANLEKLALPN  448 (467)
Q Consensus       435 ~P~~~~le~~~~p~  448 (467)
                      +|.+..+++-.+|+
T Consensus       562 ~~~g~~~~~~~~~~  575 (594)
T PRK09107        562 IPSGKAHNEMLLPD  575 (594)
T ss_pred             CCCCCCHHHHCCCC
T ss_conf             99889898824882


No 262
>PRK07308 flavodoxin; Validated
Probab=51.45  E-value=17  Score=16.10  Aligned_cols=58  Identities=17%  Similarity=0.234  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             57888888887531004675279733006857999999999871989999578876767899999
Q gi|254780673|r  347 GIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIAN  411 (467)
Q Consensus       347 G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~  411 (467)
                      |+.-..|...++.|...|+.++|.++..+.+.|.       .+...+|++--.|-.|-+-.....
T Consensus        13 Gnae~~A~~i~~~l~~~G~~v~v~~~~~~~~~~l-------~~~~~~ii~tsT~G~Ge~Pd~~~~   70 (147)
T PRK07308         13 GNTEEIADIVADKLQELGHDVDVDECTTVDASDF-------EDADIAIVATYTYGDGDLPDEIVD   70 (147)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH-------CCCCEEEEEECCCCCCCCCHHHHH
T ss_conf             2799999999999997599407611364997686-------118879999557899978734999


No 263
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=51.45  E-value=17  Score=16.10  Aligned_cols=47  Identities=19%  Similarity=0.130  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC
Q ss_conf             1223554431136506999324344588665323647540811101166
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP  193 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p  193 (467)
                      .++++.........-+++.|..+. ..+++..-..|.+++| -.|+.|+
T Consensus       196 ~i~~a~~~L~~A~rPvIl~G~g~~-~~~a~~~l~~lae~l~-~Pv~tt~  242 (562)
T PRK06048        196 QIKRAAEEIANACRPVIYAGGGVI-SSNASAELVELAETLN-APVTTTL  242 (562)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCC-CCHHHHHHHHHHHHHC-CCEEECC
T ss_conf             999999999827997899577645-1228999999999859-8878633


No 264
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=50.76  E-value=17  Score=16.02  Aligned_cols=14  Identities=7%  Similarity=0.444  Sum_probs=7.1

Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             99899999999985
Q gi|254780673|r  447 PNVDEIIESVESIC  460 (467)
Q Consensus       447 p~~~~I~~av~~v~  460 (467)
                      -+.+++-.++++..
T Consensus       501 ~~~~eL~~al~~a~  514 (539)
T TIGR03393       501 SEAEQLADVLEKVA  514 (539)
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             89999999999998


No 265
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing; InterPro: IPR005855    Glucosamine:fructose-6-phosphate aminotransferase (2.6.1.16 from EC) catalyses the formation of glucosamine 6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. The final product of the hexosamine pathway, UDP-N-acetyl glucosamine, is an active precursor of numerous macromolecules containing amino sugars.   This family of sequences belong to the MEROPS peptidase family C44 (clan PB(C)), and are classified as non-peptidase homologs.; GO: 0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity, 0016051 carbohydrate biosynthetic process, 0005737 cytoplasm.
Probab=50.68  E-value=17  Score=16.08  Aligned_cols=41  Identities=17%  Similarity=0.212  Sum_probs=22.0

Q ss_pred             CEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEE
Q ss_conf             114443168745860257888888887531004-67527973
Q gi|254780673|r  331 RARIHRQGSDVTIISFGIGMTYATKAAIELEKN-GIDAELID  371 (467)
Q Consensus       331 k~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~-gi~~~vid  371 (467)
                      ....+++=+.|+||+||+..+-.|-+...++.- +|-|+|.=
T Consensus       298 ~~~~l~~~~~I~IvACGTSYHAGLv~kY~iE~lA~iPv~Ve~  339 (628)
T TIGR01135       298 AEELLKNIDRIQIVACGTSYHAGLVAKYLIERLAGIPVEVEV  339 (628)
T ss_pred             CHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             123431555689995401688999999999986189728998


No 266
>PRK07524 hypothetical protein; Provisional
Probab=50.41  E-value=17  Score=15.99  Aligned_cols=16  Identities=6%  Similarity=0.287  Sum_probs=10.1

Q ss_pred             CHHHHHHHHHHHHCCC
Q ss_conf             9899999999985020
Q gi|254780673|r  448 NVDEIIESVESICYKR  463 (467)
Q Consensus       448 ~~~~I~~av~~v~~~~  463 (467)
                      +.+++-+++++.+..+
T Consensus       504 ~~~el~~al~~al~~~  519 (534)
T PRK07524        504 DLDQLQAALRAAFARP  519 (534)
T ss_pred             CHHHHHHHHHHHHCCC
T ss_conf             9999999999998089


No 267
>TIGR00874 talAB transaldolase; InterPro: IPR004730   Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated  in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.   Transaldolase is evolutionary related  to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0004801 transaldolase activity, 0006098 pentose-phosphate shunt, 0005737 cytoplasm.
Probab=50.29  E-value=6.9  Score=18.77  Aligned_cols=58  Identities=34%  Similarity=0.364  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHH-CCCCCEEEEEC--------------CCCCCCCHHHHHHHHH-HCC-CEEEEECCCCCCCHH
Q ss_conf             78888888875310-04675279733--------------0068579999999998-719-899995788767678
Q gi|254780673|r  348 IGMTYATKAAIELE-KNGIDAELIDL--------------RTIRPMDWQTIFESVK-KTG-RLVTVEEGYPQSSVG  406 (467)
Q Consensus       348 ~~~~~a~~aa~~L~-~~gi~~~vid~--------------r~l~Pld~~~i~~sv~-kt~-~~i~vee~~~~gg~g  406 (467)
                      ..+++-.+||+.|+ ++||+|.+==|              .-|+|| .--|++=-+ .++ +==.+|++.-.-|+.
T Consensus       136 ASTWeGI~AAe~LE~~~GI~CNlTLLFs~~QA~AcAeA~VtLISPF-VGRIlDWYka~~g~k~Y~~~~DPGV~SV~  210 (324)
T TIGR00874       136 ASTWEGIRAAEELEVKEGIHCNLTLLFSFVQAIACAEAKVTLISPF-VGRILDWYKASTGKKEYSIEEDPGVASVK  210 (324)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEECCC-HHHHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf             8761478999998874796402288877999999865686676683-44466688643788898644577522257


No 268
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=50.05  E-value=17  Score=15.95  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=9.3

Q ss_pred             EEEEHHHHHHHHHHHHHHHHCCCC
Q ss_conf             586025788888888753100467
Q gi|254780673|r  342 TIISFGIGMTYATKAAIELEKNGI  365 (467)
Q Consensus       342 tii~~G~~~~~a~~aa~~L~~~gi  365 (467)
                      +-|+||.|.+.|...|.=+..-||
T Consensus       614 cgvaWGa~SQKAaaIatG~nR~GI  637 (779)
T PRK00941        614 CGVAWGAYSQKAAAIATGFNRWGI  637 (779)
T ss_pred             EEEEECHHHHHHHHHHCCCCEECC
T ss_conf             788641330778998708651078


No 269
>PRK11637 hypothetical protein; Provisional
Probab=49.60  E-value=10  Score=17.53  Aligned_cols=14  Identities=14%  Similarity=0.396  Sum_probs=6.5

Q ss_pred             EEEEECCCCCEEEE
Q ss_conf             14443168745860
Q gi|254780673|r  332 ARIHRQGSDVTIIS  345 (467)
Q Consensus       332 ~~i~~~G~ditii~  345 (467)
                      +..+..|.-|..++
T Consensus       362 Gq~V~~Gq~Ig~vG  375 (404)
T PRK11637        362 GAQVRAGQPIALVG  375 (404)
T ss_pred             CCEECCCCEEEEEE
T ss_conf             79989999698732


No 270
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=48.92  E-value=18  Score=15.83  Aligned_cols=91  Identities=14%  Similarity=0.159  Sum_probs=51.6

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC----
Q ss_conf             8887531004675279733006857999999999871989999578876767899999999967764289829971----
Q gi|254780673|r  354 TKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTIT----  429 (467)
Q Consensus       354 ~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~----  429 (467)
                      -+|.+.|++.||+...   + -+++..+.    +.....++++++...         ..+....-......+.+++    
T Consensus        44 ~~a~~~l~~~Gid~s~---~-sr~i~~~~----~~~~DlIl~Md~~~~---------~~l~~~~p~~~~~kv~~l~~~~~  106 (140)
T smart00226       44 PRAVEVLKEHGIALSH---H-ASQLTSSD----FKNADLVLAMDHSHL---------RNICRLKPRVSRAKVELFGEYVT  106 (140)
T ss_pred             HHHHHHHHHHCCCCCC---C-CCCCCHHH----HHHCCEEEEECHHHH---------HHHHHHCCCCCCHHEEEHHHHCC
T ss_conf             8999999995988221---4-35487878----716999999092789---------99876568644102464745366


Q ss_pred             --CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             --777888889667656089989999999998502
Q gi|254780673|r  430 --GRDVPMPYAANLEKLALPNVDEIIESVESICYK  462 (467)
Q Consensus       430 --~~d~p~P~~~~le~~~~p~~~~I~~av~~v~~~  462 (467)
                        ..|+|-||...++. |--..+.|-++++..+.|
T Consensus       107 ~~~~dI~DPyg~~~~~-F~~~~~~I~~~~~~ll~k  140 (140)
T smart00226      107 GSHGDVDDPYYGGIDG-FEQVYDELENALQEFLKQ  140 (140)
T ss_pred             CCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHC
T ss_conf             6687378999997799-999999999999999819


No 271
>PRK07050 cystathionine beta-lyase; Provisional
Probab=48.71  E-value=18  Score=15.81  Aligned_cols=47  Identities=23%  Similarity=0.366  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC-CCEECCCC
Q ss_conf             122355443113650699932434458866532364754081-11011666
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGC-ERVIDTPI  194 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~-~R~~d~pi  194 (467)
                      |+..++...++....++ ...++  |||.+..-+.+..+||= -+++|.--
T Consensus        92 Ai~~~ll~ll~~Gd~vv-~~~~~--Yg~T~~~~~~~l~~~Gi~v~f~d~~d  139 (394)
T PRK07050         92 AISNVYFGLVKAGDDVL-IPDNV--YGPNRDFGEWLAKDFGITVRFYDPMI  139 (394)
T ss_pred             HHHHHHHHHCCCCCEEE-ECCCC--CHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             99999999607998578-35666--33389999987531887999979999


No 272
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=48.05  E-value=19  Score=15.74  Aligned_cols=76  Identities=21%  Similarity=0.315  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EE-EEECCCCCCCHH------HHHHHHHHHHHHHH
Q ss_conf             88888753100467527973300685799999999987198----99-995788767678------99999999967764
Q gi|254780673|r  352 YATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LV-TVEEGYPQSSVG------STIANQVQRKVFDY  420 (467)
Q Consensus       352 ~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i-~vee~~~~gg~g------~~i~~~i~e~~f~~  420 (467)
                      .+-+|-+.|.+.|++.+++|.+ -.|++.+.+...+++.+.    ++ +=+..|+.-++.      +++...+.++. ..
T Consensus        11 t~rka~~~L~~~~i~~~~idy~-~~p~~~~eL~~~~~~~~~~~~~lir~~~~~~k~l~l~~~~~s~~e~i~ll~~~P-~L   88 (112)
T cd03034          11 KSRNALALLEEAGIEPEIVEYL-KTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLADPELSDEELIDAMAAHP-IL   88 (112)
T ss_pred             HHHHHHHHHHHCCCCCEEEECC-CCCCCHHHHHHHHHHCCCCHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHCH-HH
T ss_conf             8999999999879984898501-467999999999988299999998636854555488742126899999999786-87


Q ss_pred             CCCCCEEEC
Q ss_conf             289829971
Q gi|254780673|r  421 LDAPILTIT  429 (467)
Q Consensus       421 L~~p~~ri~  429 (467)
                      ++.|+..-+
T Consensus        89 ikRPIl~~~   97 (112)
T cd03034          89 IERPIVVTG   97 (112)
T ss_pred             HHCCEEEEC
T ss_conf             608779869


No 273
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase; InterPro: IPR006003    The enzymes for catabolism of the pentitols D-arabinitol and ribitol include NAD-dependent pentose dehydrogenase (dalD and rbtD), ATP-dependent pentulose kinases (dalK and rbtK) and a pentose-specific ion symporter (dalT and rbtT). Of the two kinases (19.3 0dentity), DalK (487 aa) belongs to the family of short D-xylulokinases and RbtK (D-ribulokinase; 535 aa) to the family of long kinases . .
Probab=48.04  E-value=7  Score=18.72  Aligned_cols=104  Identities=13%  Similarity=0.114  Sum_probs=39.2

Q ss_pred             CEEEEHHHHHHHHHHHHHHHHC---CC-CCEEEEEC---CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             4586025788888888753100---46-75279733---00685799999999987198999957887676789999999
Q gi|254780673|r  341 VTIISFGIGMTYATKAAIELEK---NG-IDAELIDL---RTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQV  413 (467)
Q Consensus       341 itii~~G~~~~~a~~aa~~L~~---~g-i~~~vid~---r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i  413 (467)
                      +.+.=+..|-..|+....+++.   .| .-..-|=+   .+=.||=.+ |+.-+-.-=-|++ -+....-=+|+++.--.
T Consensus       439 la~lY~a~~~~iaygtRqI~ea~~~~Gr~~~k~i~~sGg~~qnpl~~q-~~Ad~C~~Pvlip-r~~~e~Vl~GaA~LGA~  516 (574)
T TIGR01315       439 LALLYLATLEAIAYGTRQIVEALTAAGRAVIKSILISGGLAQNPLLVQ-LLADICDLPVLIP-RDVQEAVLLGAAILGAA  516 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHH-HHHHHCCCCEECC-HHHCHHHHHHHHHHHHH
T ss_conf             999999999998643889999986268602201134176445257888-8963417873244-11020577768888876


Q ss_pred             HH------HHHHHCCCCCEEECCCCCC-CCCCHHHHHHCC
Q ss_conf             99------6776428982997177788-888966765608
Q gi|254780673|r  414 QR------KVFDYLDAPILTITGRDVP-MPYAANLEKLAL  446 (467)
Q Consensus       414 ~e------~~f~~L~~p~~ri~~~d~p-~P~~~~le~~~~  446 (467)
                      ..      +.|+-|..-..|++..+-- -|....-|+..+
T Consensus       517 A~asakPdg~~~sl~~am~~m~~~gk~v~p~~~~~e~~lh  556 (574)
T TIGR01315       517 ASASAKPDGIAESLEEAMKRMSKVGKLVYPREETAEKKLH  556 (574)
T ss_pred             HCCCCCCCCCCCCHHHHHHHCCCCCCEECCCCCHHHHHHH
T ss_conf             3135688888876799998528998533267654678877


No 274
>CHL00006 consensus
Probab=48.03  E-value=19  Score=15.74  Aligned_cols=36  Identities=14%  Similarity=0.220  Sum_probs=31.3

Q ss_pred             EEECCCCCEECCCCEEEEEE--------CCCCEEEEECCCCCEE
Q ss_conf             77417897625898599995--------3753334317778689
Q gi|254780673|r   21 KWKKNEGDLIKQGDIIYEVE--------TDKAVMEVESIDEGIL   56 (467)
Q Consensus        21 ~W~vk~GD~V~~gd~l~eiE--------TDKat~EV~A~~~G~i   56 (467)
                      =++|+.|+.|+.+|+|+||-        ++|+.=+|-|..+|-+
T Consensus       405 lL~V~n~q~V~s~QvIAEi~a~~~~~~~kEk~~K~i~s~~~GE~  448 (1372)
T CHL00006        405 FLLVQNDQYVESEQVIAEIRAGTSTFNFKERVRKHIYSDSEGEM  448 (1372)
T ss_pred             EEEEECCCEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCCCC
T ss_conf             89998995885052899982577666630258767752776412


No 275
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=47.95  E-value=19  Score=15.73  Aligned_cols=38  Identities=32%  Similarity=0.399  Sum_probs=17.7

Q ss_pred             HCCCCC-EEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC
Q ss_conf             113650-6999324344588665323647540811101166
Q gi|254780673|r  154 MRRDKD-VFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP  193 (467)
Q Consensus       154 m~~d~~-~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p  193 (467)
                      +.+-++ +++.|..+... ++...-..|.+++| --|+.|+
T Consensus       198 l~~A~rPvi~~G~Gv~~~-~a~~~l~~lae~l~-~PV~tt~  236 (535)
T TIGR03394       198 MRSATSPVMMVCVEVRRY-GLEAKVAELAQRLG-VPVVTTF  236 (535)
T ss_pred             HHHCCCCEEEEECCCCCC-CHHHHHHHHHHHHC-CCCCCCC
T ss_conf             985568829983140024-57999999999728-8844264


No 276
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=47.62  E-value=19  Score=15.70  Aligned_cols=31  Identities=19%  Similarity=0.394  Sum_probs=17.2

Q ss_pred             CC-CCCCHHHHHHCCCCH------HHHHHHHHHHHCCC
Q ss_conf             88-888966765608998------99999999985020
Q gi|254780673|r  433 VP-MPYAANLEKLALPNV------DEIIESVESICYKR  463 (467)
Q Consensus       433 ~p-~P~~~~le~~~~p~~------~~I~~av~~v~~~~  463 (467)
                      .| +|-+..|++-..|..      ..-+...|++++-|
T Consensus       548 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (586)
T PRK06276        548 LPMVPPGGNLTNILGPERQEPTPKAQCFSEMKKILNPK  585 (586)
T ss_pred             CCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             89999899988836886446651778888787531789


No 277
>PRK05569 flavodoxin; Provisional
Probab=47.55  E-value=17  Score=16.04  Aligned_cols=32  Identities=13%  Similarity=0.075  Sum_probs=21.9

Q ss_pred             EHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             02578888888875310046752797330068
Q gi|254780673|r  345 SFGIGMTYATKAAIELEKNGIDAELIDLRTIR  376 (467)
Q Consensus       345 ~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~  376 (467)
                      .||++-..|...++-+.+.|+++++.++....
T Consensus        11 ~~GnTe~mA~~IaeG~~~~G~ev~v~~~~~~~   42 (141)
T PRK05569         11 CGGNVEVLANTIADGAKEAGAEVTIKHVADAK   42 (141)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             96089999999999999769819999842399


No 278
>PRK08236 hypothetical protein; Provisional
Probab=47.45  E-value=8  Score=18.31  Aligned_cols=49  Identities=18%  Similarity=0.195  Sum_probs=32.8

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCH
Q ss_conf             23554431136506999324344588665323647540811101166662
Q gi|254780673|r  147 RDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITE  196 (467)
Q Consensus       147 ~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E  196 (467)
                      ..++.+.+..+..++++=-.||.---++ .|.-|.++|+|+.++|+||+=
T Consensus        14 ~~~~~~g~~~~~~v~ll~sGIGkVnAA~-~t~~li~~~~pd~VIntGiAG   62 (207)
T PRK08236         14 KEAVLRGLGGDGAVDVLAAGVGPAAAAA-STARALAAAPYDLVVSAGIAG   62 (207)
T ss_pred             HHHHHHHCCCCCCEEEEECCCCHHHHHH-HHHHHHHHCCCCEEEEECCCC
T ss_conf             9999986089977899947825999999-999999867999999934345


No 279
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=47.16  E-value=19  Score=15.65  Aligned_cols=46  Identities=13%  Similarity=0.191  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECC
Q ss_conf             122355443113650699932434458866532364754081110116
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDT  192 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~  192 (467)
                      ++.++..-......-+++.|..+.. .|++..-..|.+++| -.|+.|
T Consensus       196 ~i~~a~~lL~~AkrPvIl~G~G~~~-~~a~~~l~~lae~l~-~Pv~tT  241 (572)
T PRK06456        196 KIKKAAEILINAERPIILVGTGVVW-SNATPEVLELAELLH-IPIVST  241 (572)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHHHHC-CCCEEC
T ss_conf             9999999998189988999558241-436499999999839-981220


No 280
>PRK08322 acetolactate synthase; Reviewed
Probab=46.96  E-value=19  Score=15.63  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=18.6

Q ss_pred             CEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCC
Q ss_conf             069993243445886653236475408111011666
Q gi|254780673|r  159 DVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPI  194 (467)
Q Consensus       159 ~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi  194 (467)
                      -+++.|..+... ++...-+.|.+++|- .|+.|+-
T Consensus       199 PvIi~G~g~~~~-~a~~~l~~lae~l~~-PV~tt~~  232 (547)
T PRK08322        199 PLILIGAGANRK-TASKALTEFVDKTGI-PFFTTQM  232 (547)
T ss_pred             CEEECCCCCCCH-HHHHHHHHHHHHHCC-CEEEECC
T ss_conf             789868885734-099999999998299-7896046


No 281
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=46.60  E-value=15  Score=16.50  Aligned_cols=82  Identities=20%  Similarity=0.176  Sum_probs=48.5

Q ss_pred             CEEEEHHHHHHHHHHHHHH---HHCCCCCEEEEEC-CCC--CCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             4586025788888888753---1004675279733-006--857999999999871989999578876767899999999
Q gi|254780673|r  341 VTIISFGIGMTYATKAAIE---LEKNGIDAELIDL-RTI--RPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQ  414 (467)
Q Consensus       341 itii~~G~~~~~a~~aa~~---L~~~gi~~~vid~-r~l--~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~  414 (467)
                      ++.+-++.....|+.+..+   +++.||.++=|-+ --+  +|+=.+.   -..-||+-|++-.+-...=+|+.+..-+.
T Consensus       403 l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql---~aDvtg~~v~i~~s~~a~llGsAm~~avA  479 (544)
T COG1069         403 LALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQL---YADVTGRPVVIPASDQAVLLGAAMFAAVA  479 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHH---HHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             899999999999866999999999769701478871773238999999---87740975785266420256789999987


Q ss_pred             HHHHHHCCCCC
Q ss_conf             96776428982
Q gi|254780673|r  415 RKVFDYLDAPI  425 (467)
Q Consensus       415 e~~f~~L~~p~  425 (467)
                      -..|..|...-
T Consensus       480 ag~~~dl~~A~  490 (544)
T COG1069         480 AGVHPDLPAAA  490 (544)
T ss_pred             CCCCCCHHHHH
T ss_conf             05574469999


No 282
>PRK06242 flavodoxin; Provisional
Probab=46.52  E-value=20  Score=15.58  Aligned_cols=62  Identities=18%  Similarity=0.218  Sum_probs=31.5

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHH-HHHHCCCCHHHHHHHHH
Q ss_conf             99957887676789999999996776428982997177788888966-76560899899999999
Q gi|254780673|r  394 VTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAAN-LEKLALPNVDEIIESVE  457 (467)
Q Consensus       394 i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~-le~~~~p~~~~I~~av~  457 (467)
                      ++..-|.....+...+...+.++++..+..  --+-+-|+.-|+... .-....|+.+|+-+|.+
T Consensus        79 ~F~T~G~~~~~~~~~l~~~L~~kg~~v~G~--F~CkG~dt~gp~k~~ggi~kghPn~~Dl~~A~~  141 (150)
T PRK06242         79 IFSTSGLGKSKYHKALRKKLEEKGFIIIGE--FTCKGFDTFGPFKLIGGINKGHPNEKDLENAKE  141 (150)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHCCCEEEEE--EEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             998889897336899999999689979788--984150255744321665489949899999999


No 283
>PRK05939 hypothetical protein; Provisional
Probab=46.48  E-value=20  Score=15.58  Aligned_cols=46  Identities=13%  Similarity=0.211  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCC-CCCEECCCC
Q ss_conf             12235544311365069993243445886653236475408-111011666
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFG-CERVIDTPI  194 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg-~~R~~d~pi  194 (467)
                      |+.-++...++....++ ...++  |||.+....- +.+|| .-+++|.--
T Consensus        73 Ai~~~l~~ll~~Gd~il-~~~~~--YG~t~~l~~~-l~~~GI~v~~vd~~d  119 (396)
T PRK05939         73 AIAAVFLTLLRAGDHLV-SSQYL--FGNTNSLLGT-LQGLGVEVTMVDATD  119 (396)
T ss_pred             HHHHHHHHHCCCCCEEE-ECCCC--CCHHHHHHHH-HHHCCEEEEEECCCC
T ss_conf             99999998358898899-53886--9229999998-653186999988979


No 284
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=46.34  E-value=14  Score=16.67  Aligned_cols=29  Identities=0%  Similarity=0.110  Sum_probs=10.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf             678999999999677642898299717778
Q gi|254780673|r  404 SVGSTIANQVQRKVFDYLDAPILTITGRDV  433 (467)
Q Consensus       404 g~g~~i~~~i~e~~f~~L~~p~~ri~~~d~  433 (467)
                      .+++.+.+.++++.... +.+--|+...+.
T Consensus       257 ~La~sL~aVisQ~L~~~-~~g~GRv~~~EI  285 (353)
T COG2805         257 QLAESLRAVISQRLLPK-KDGGGRVAAFEI  285 (353)
T ss_pred             HHHHHHHHHHHHHCEEC-CCCCCEEEEEHH
T ss_conf             99999999976331003-689961464157


No 285
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=45.41  E-value=20  Score=15.47  Aligned_cols=108  Identities=15%  Similarity=0.118  Sum_probs=51.1

Q ss_pred             CCCCEECCCCC--HHHHHHHHHHHHHCC-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             81110116666--278998999988718-864456666-67899999999987886742117767888799830244576
Q gi|254780673|r  185 GCERVIDTPIT--EHGFAGIGIGASFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR  260 (467)
Q Consensus       185 g~~R~~d~pi~--E~~~~G~a~G~A~~G-~~Piv~~~~-~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~  260 (467)
                      .+.|++..+-.  =..-+..|+|++++- -||++.+.- ..|.|...+  +..+.        +.++|+++-.-+-.+++
T Consensus        39 ~~~~~~~~~~~g~mG~~lpaAiGa~lA~p~~~Vv~i~GDG~f~m~~~E--l~Ta~--------r~~l~vi~vV~NN~~~~  108 (183)
T cd02005          39 KGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQE--LSTMI--------RYGLNPIIFLINNDGYT  108 (183)
T ss_pred             CCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH--HHHHH--------HHCCCEEEEEEECCCCC
T ss_conf             999898377750377899999999997899847999567367620889--99999--------82998199999899432


Q ss_pred             -----CCHHHH------HHHHHHHHH------HCCCEEEEEECCHHCCCHHHHHHH-CCCCEE
Q ss_conf             -----444433------216887632------203138665221000105556541-378347
Q gi|254780673|r  261 -----VAAQHS------QCYAAWYSH------VPGLKVVIPYTASDAKGLLKAAIR-DPNPVI  305 (467)
Q Consensus       261 -----~g~~Hs------~~~~~~~~~------iPgl~V~~P~~~~d~~~ll~~ai~-~~~Pvi  305 (467)
                           ++..++      -+|..+...      ++|++|   .++.|++..|+.|+. .+.|++
T Consensus       109 ~~r~~~~~~~~~~~~~~~df~~~A~a~G~~~g~~g~rV---~~~~el~~al~~Al~~~~~P~l  168 (183)
T cd02005         109 IERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRV---KTEGELDEALKDALFNRDKLSL  168 (183)
T ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEE---CCHHHHHHHHHHHHHCCCCEEE
T ss_conf             55751268656576999999999999478668428997---8999999999999972898299


No 286
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=45.33  E-value=20  Score=15.46  Aligned_cols=19  Identities=37%  Similarity=0.211  Sum_probs=8.3

Q ss_pred             CHHHHHHHHHHHHHCCCCC
Q ss_conf             6278998999988718864
Q gi|254780673|r  195 TEHGFAGIGIGASFAGLKP  213 (467)
Q Consensus       195 ~E~~~~G~a~G~A~~G~~P  213 (467)
                      -||+...+|.|+|..--||
T Consensus        47 HEq~Aa~mAdgyar~TGkp   65 (550)
T COG0028          47 HEQGAAFAADGYARATGKP   65 (550)
T ss_pred             CHHHHHHHHHHHHHHHCCC
T ss_conf             5899999999999982998


No 287
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=45.06  E-value=21  Score=15.43  Aligned_cols=115  Identities=19%  Similarity=0.150  Sum_probs=54.9

Q ss_pred             HHHHCCCCCEECCCCCH--HHHHHHHHHHHHCC-CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             47540811101166662--78998999988718-86445666-6678999999999878867421177678887998302
Q gi|254780673|r  180 LLQEFGCERVIDTPITE--HGFAGIGIGASFAG-LKPIVEFM-TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPN  255 (467)
Q Consensus       180 l~~~fg~~R~~d~pi~E--~~~~G~a~G~A~~G-~~Piv~~~-~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~  255 (467)
                      +..-+.|.|++..+---  ..-++.|+|++++- -||++.+. ...|.|...+  +..+.        +.++|+++..-.
T Consensus        32 ~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~E--L~Ta~--------~~~lpi~~iV~n  101 (172)
T cd02004          32 ILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFSGME--LETAV--------RYNLPIVVVVGN  101 (172)
T ss_pred             HCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHCCCHH--HHHHH--------HHCCCEEEEEEE
T ss_conf             74737999498079876477799999999997899849999779734024078--88999--------849885999982


Q ss_pred             CCCCCCCHHHH-----------------HHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEE
Q ss_conf             44576444433-----------------2168876322031386652210001055565413783476
Q gi|254780673|r  256 GAAARVAAQHS-----------------QCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIF  306 (467)
Q Consensus       256 G~~~~~g~~Hs-----------------~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~  306 (467)
                      -.+++. ..+.                 -++..+ +.-=|.+-....++.|++..|+.+++.++|+++
T Consensus       102 N~~~~~-i~~~q~~~~~~~~~~~~~~~~~df~~i-A~a~G~~~~~v~~~~el~~al~~a~~~~~p~li  167 (172)
T cd02004         102 NGGWYQ-GLDGQQLSYGLGLPVTTLLPDTRYDLV-AEAFGGKGELVTTPEELKPALKRALASGKPALI  167 (172)
T ss_pred             CCCHHH-HHHHHHHHHCCCCCCEECCCCCCHHHH-HHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf             883289-999989872689874321899877899-997598289978999999999999958996999


No 288
>pfam09363 XFP_C XFP C-terminal domain. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Probab=44.95  E-value=20  Score=15.54  Aligned_cols=133  Identities=17%  Similarity=0.319  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCCCCCCCHHH-HHHHHHH-HHHHCCCEEEEEECCHH----------CCC
Q ss_conf             99999987886742117767888-79983024457644443-3216887-63220313866522100----------010
Q gi|254780673|r  226 AIDQIINSAAKTRYMSGGQITTS-IVFRGPNGAAARVAAQH-SQCYAAW-YSHVPGLKVVIPYTASD----------AKG  292 (467)
Q Consensus       226 a~dqi~n~~ak~~~~~gg~~~~p-~v~r~p~G~~~~~g~~H-s~~~~~~-~~~iPgl~V~~P~~~~d----------~~~  292 (467)
                      |-.++..-++.|.|.|..+-.-| ||+-     ..|.-|+. +..=..+ -.++|.|+|=. -|..|          ..+
T Consensus        13 A~~hc~~G~~iW~wAS~d~g~ePDVVlA-----~aGd~pT~E~LAA~~lLr~~~P~lkiR~-VNVvDLm~L~~~~~hphg   86 (203)
T pfam09363        13 AIAHCTKGLGIWDWASNDDGEEPDVVMA-----CAGDVPTLETLAAVDLLREHFPDLKIRV-VNVVDLMKLQPPSEHPHG   86 (203)
T ss_pred             HHHHHHCCCEEEEECCCCCCCCCCEEEE-----CCCCCCCHHHHHHHHHHHHHCCCCEEEE-EEEEEHHHHCCCCCCCCC
T ss_conf             9999975870897434799999999998-----1787211999999999998698756999-997671321788889988


Q ss_pred             H----HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECC-CCCEEEEHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             5----556541378347640212333334533466312144311444316-87458602578888888875310046752
Q gi|254780673|r  293 L----LKAAIRDPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQG-SDVTIISFGIGMTYATKAAIELEKNGIDA  367 (467)
Q Consensus       293 l----l~~ai~~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G-~ditii~~G~~~~~a~~aa~~L~~~gi~~  367 (467)
                      |    +.+.+-.+.||||==|.  |..-     ...  +-++     |.+ ..+.+-+|              .++|--.
T Consensus        87 Lsd~~Fd~lFT~DkPViF~fHG--Yp~l-----I~~--L~~~-----R~n~~n~hV~GY--------------~EeGttT  138 (203)
T pfam09363        87 LSDREFDSLFTTDKPVIFAFHG--YPWL-----IHR--LTYR-----RTNHHNLHVRGY--------------KEEGTTT  138 (203)
T ss_pred             CCHHHHHHHCCCCCCEEEECCC--CHHH-----HHH--HHCC-----CCCCCCEEEEEE--------------CCCCCCC
T ss_conf             9978999756799977998179--8889-----999--8557-----899884578710--------------0178878


Q ss_pred             EEEECCCCCCCCH-HHHHHHHHHCCC
Q ss_conf             7973300685799-999999987198
Q gi|254780673|r  368 ELIDLRTIRPMDW-QTIFESVKKTGR  392 (467)
Q Consensus       368 ~vid~r~l~Pld~-~~i~~sv~kt~~  392 (467)
                      +=+||+-++-+|. ....+.+.+..+
T Consensus       139 TPFDM~v~N~~dRfhLa~dai~~~~~  164 (203)
T pfam09363       139 TPFDMRVLNELDRFHLAIDAIDRVPR  164 (203)
T ss_pred             CCHHHHHHCCCCHHHHHHHHHHHCHH
T ss_conf             71678877076689999999996520


No 289
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=44.91  E-value=21  Score=15.42  Aligned_cols=71  Identities=18%  Similarity=0.226  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH-HHH-HHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCC
Q ss_conf             9999987886742117767888799830244576444433-216-887632203138665221000105556541378
Q gi|254780673|r  227 IDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHS-QCY-AAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPN  302 (467)
Q Consensus       227 ~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~-~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~  302 (467)
                      .++....+++......|....|+.+-||.|    .|-+|- |.. ..+...-||.+|++-+ +.+...-+..++++..
T Consensus        15 ~N~~a~~~~~~i~~~~~~~~npl~i~G~~G----~GKTHLLqA~~~~~~~~~~~~~v~yl~-~~~~~~~~~~~l~~~~   87 (219)
T pfam00308        15 SNRFAHAAALAVAEAPGKAYNPLFIYGGVG----LGKTHLLHAIGNYALRNFPNLRVVYLT-SEEFLNDFVDALRDNK   87 (219)
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCEEEECCCC----CCHHHHHHHHHHHHHHHCCCCEEEEEE-HHHHHHHHHHHHHCCC
T ss_conf             389999999999967587678269988999----988899999999999849998288843-9999998899998188


No 290
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=44.91  E-value=21  Score=15.42  Aligned_cols=26  Identities=15%  Similarity=0.149  Sum_probs=10.1

Q ss_pred             EEEEHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             586025788888888753100467527
Q gi|254780673|r  342 TIISFGIGMTYATKAAIELEKNGIDAE  368 (467)
Q Consensus       342 tii~~G~~~~~a~~aa~~L~~~gi~~~  368 (467)
                      .|+++|+..-.- .+++.+.+.|+.+.
T Consensus       183 ~v~~CGP~~Mmk-~v~~~~~~~~v~~~  208 (281)
T PRK06222        183 RVFAIGPVIMMK-AVAELTKPYGIKTI  208 (281)
T ss_pred             EEEEECCHHHHH-HHHHHHHHCCCCEE
T ss_conf             899989999999-99999987699799


No 291
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=44.82  E-value=21  Score=15.41  Aligned_cols=54  Identities=26%  Similarity=0.369  Sum_probs=31.8

Q ss_pred             CCCCCEECCCCEEEEEE-CCCCEEE--EECCCCCEEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             17897625898599995-3753334--317778689899823788513269758999437
Q gi|254780673|r   24 KNEGDLIKQGDIIYEVE-TDKAVME--VESIDEGILGKILCPNGTKNVKVNTPIAAILQE   80 (467)
Q Consensus        24 vk~GD~V~~gd~l~eiE-TDKat~E--V~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~e   80 (467)
                      +|+||.|..||+|-+|. |.=..-.  ||--..|.|..| +.+| + ..|.++||.+.+.
T Consensus       124 ~~~Gd~v~~Gdilg~V~Et~~i~H~imvPp~~~g~v~~i-~~~G-~-ytv~d~ia~v~~~  180 (585)
T PRK04192        124 VKVGDKVVAGDVLGTVQETGSIEHKIMVPPGVSGTIKEI-ASEG-D-YTVDDTIAVVEDE  180 (585)
T ss_pred             CCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCEEEEE-ECCC-C-EEEEEEEEEEECC
T ss_conf             355874157865788504665334110698887338997-0588-5-0430169998626


No 292
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=44.78  E-value=21  Score=15.40  Aligned_cols=51  Identities=14%  Similarity=0.184  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCC-CCCEECCCCCHHHH
Q ss_conf             12235544311365069993243445886653236475408-11101166662789
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFG-CERVIDTPITEHGF  199 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg-~~R~~d~pi~E~~~  199 (467)
                      |+.-++.-.++....++ ...++  |||.+..-+.+..+|| .-+++|. ..++++
T Consensus        79 Ais~~l~~~l~~Gd~vv-~~~~~--Yg~T~~l~~~~~~~~gi~v~~~d~-~d~~~~  130 (386)
T PRK08045         79 AIHLVTTVFLKPGDLLV-APHDC--YGGSYRLFDSLAKRGCYRVLFVDQ-GDEQAL  130 (386)
T ss_pred             HHHHHHHHHCCCCCEEE-ECCCC--CHHHHHHHHHHHCCCCEEEEEECC-CCHHHH
T ss_conf             99999997079999899-83786--348999999872079579999699-998999


No 293
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=43.99  E-value=21  Score=15.32  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHCCC--CCEECCCCCH
Q ss_conf             66532364754081--1101166662
Q gi|254780673|r  173 AYKVTQGLLQEFGC--ERVIDTPITE  196 (467)
Q Consensus       173 ~f~~t~gl~~~fg~--~R~~d~pi~E  196 (467)
                      -|..|+.+.++...  -+++|.|+|=
T Consensus        97 ~~~~t~~~~~~l~~~gi~flDapVSG  122 (298)
T PRK12490         97 RYKDDLRRAEELAERGIHYVDCGTSG  122 (298)
T ss_pred             CHHHHHHHHHHHHHCCCCEECCCCCC
T ss_conf             99999999999997599030553578


No 294
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=43.76  E-value=21  Score=15.30  Aligned_cols=72  Identities=15%  Similarity=0.194  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             57888888887531004675279733006857999999999871989999578876767899999999967764289829
Q gi|254780673|r  347 GIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPIL  426 (467)
Q Consensus       347 G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~  426 (467)
                      |.+-..|...|..|.+.|+.|++.|++-+.-++++.       .. -|++--+...|-|-+++-+.|..+.-..-..|..
T Consensus        12 GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~-------yd-avVIgAsI~~~h~~~~~~~Fv~k~~e~L~~kP~A   83 (175)
T COG4635          12 GQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALED-------YD-AVVIGASIRYGHFHEAVQSFVKKHAEALSTKPSA   83 (175)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCHHH-------CC-EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             758999999999755417705653656540268411-------75-6998241136666899999999999998159866


No 295
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=43.09  E-value=22  Score=15.23  Aligned_cols=14  Identities=14%  Similarity=0.128  Sum_probs=8.3

Q ss_pred             CHHHHHHHHHHHHC
Q ss_conf             98999999999850
Q gi|254780673|r  448 NVDEIIESVESICY  461 (467)
Q Consensus       448 ~~~~I~~av~~v~~  461 (467)
                      +.+++-.++++.+.
T Consensus       520 ~~~el~~al~~Al~  533 (574)
T PRK07979        520 HPDELESKLSEALE  533 (574)
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             99999999999984


No 296
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=41.66  E-value=23  Score=15.08  Aligned_cols=13  Identities=15%  Similarity=0.061  Sum_probs=5.5

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9899999999985
Q gi|254780673|r  448 NVDEIIESVESIC  460 (467)
Q Consensus       448 ~~~~I~~av~~v~  460 (467)
                      +.+++-.++++.+
T Consensus       523 ~~~el~~Al~~Al  535 (571)
T PRK07710        523 DPLEAKEQLQHAI  535 (571)
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9999999999998


No 297
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=41.49  E-value=14  Score=16.64  Aligned_cols=19  Identities=37%  Similarity=0.775  Sum_probs=9.8

Q ss_pred             HHHHHHHHCCCCCEEEEEC
Q ss_conf             2355443113650699932
Q gi|254780673|r  147 RDAIAEEMRRDKDVFIMGE  165 (467)
Q Consensus       147 ~~a~~e~m~~d~~~~~~ge  165 (467)
                      .+++...|+.||+++++||
T Consensus        64 ~~~lr~aLR~~PDvI~vGE   82 (198)
T cd01131          64 ENALKAALRQDPDVILVGE   82 (198)
T ss_pred             HHHHHHHHHHCCCEEECCC
T ss_conf             9999999854888575277


No 298
>pfam02776 TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain.
Probab=41.36  E-value=23  Score=15.05  Aligned_cols=118  Identities=20%  Similarity=0.145  Sum_probs=59.1

Q ss_pred             CCCHHHHCCCC---CEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             23647540811---1011666627899899998871886445666667-8999999999878867421177678887998
Q gi|254780673|r  177 TQGLLQEFGCE---RVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFN-FAMQAIDQIINSAAKTRYMSGGQITTSIVFR  252 (467)
Q Consensus       177 t~gl~~~fg~~---R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~-f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r  252 (467)
                      ...|.+.+...   |+ =....|++.+.+|.|+|...-||-+.+.+.. =+..++..|.|-     |.    -+.||++-
T Consensus        27 ~~~l~~al~~~~~i~~-i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~gl~~A-----~~----~~~Pvl~i   96 (172)
T pfam02776        27 ILPLLDALAKSPGIRY-VLVRHEQGAGFAADGYARATGKPGVVLVTSGPGATNALTGLANA-----YV----DSIPVLVI   96 (172)
T ss_pred             HHHHHHHHHHCCCCEE-EEECCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH-----HH----CCCCEEEE
T ss_conf             7999999986799769-98687799999999999986998799983580688799999999-----87----59984999


Q ss_pred             EECCCCCCC--CHHH-HHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH-----CCCCEE
Q ss_conf             302445764--4443-3216887632203138665221000105556541-----378347
Q gi|254780673|r  253 GPNGAAARV--AAQH-SQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR-----DPNPVI  305 (467)
Q Consensus       253 ~p~G~~~~~--g~~H-s~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~-----~~~Pvi  305 (467)
                      ...-.....  +..| .-+...+|+.+-- ......++.++...+..|++     -++||.
T Consensus        97 ~g~~~~~~~~~~~~q~~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~  156 (172)
T pfam02776        97 SGQVPTSDLGQGAFQEELDQLALFRPVTK-WAERVTSPDEIPEALDRAFRTALSGRPGPVY  156 (172)
T ss_pred             ECCCCHHHCCCCCCHHHHHHHCCCCCEEE-EEEECCCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             36887776078952000455414566066-8888899999999999999998329997799


No 299
>PRK05858 hypothetical protein; Provisional
Probab=41.30  E-value=23  Score=15.04  Aligned_cols=47  Identities=21%  Similarity=0.147  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC
Q ss_conf             012235544311365-06999324344588665323647540811101166
Q gi|254780673|r  144 EALRDAIAEEMRRDK-DVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP  193 (467)
Q Consensus       144 ea~~~a~~e~m~~d~-~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p  193 (467)
                      ++++++. +.+.+-+ -+++.|.++.. .++...-+.|.+++|- .|+.|+
T Consensus       193 ~~i~~a~-~~L~~AkrPvii~G~gv~~-~~a~~~l~~lae~lg~-Pv~tt~  240 (543)
T PRK05858        193 DALDRAA-GLLSTAQRPVIMAGTNVWW-GHAEAALLRLAEELHI-PVLMNG  240 (543)
T ss_pred             HHHHHHH-HHHHHCCCCEEEECCCCCC-CCHHHHHHHHHHHHCC-CEEECC
T ss_conf             9999999-9998279978996864223-3339999999998699-778755


No 300
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=41.14  E-value=23  Score=15.03  Aligned_cols=47  Identities=11%  Similarity=0.119  Sum_probs=25.7

Q ss_pred             EHHHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf             025788888888753100--46752797330068579999999998719899
Q gi|254780673|r  345 SFGIGMTYATKAAIELEK--NGIDAELIDLRTIRPMDWQTIFESVKKTGRLV  394 (467)
Q Consensus       345 ~~G~~~~~a~~aa~~L~~--~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i  394 (467)
                      .||++-..|...|+-|.+  .|+.++++|++.-   |...|+..+.+.+.++
T Consensus       261 myGnT~~MA~aIA~Gl~~~~~gv~V~~~n~~~~---~~seI~~~i~~s~gvl  309 (479)
T PRK05452        261 MSNNTRMMADAIAQGIAEVDPRVAVKIFNVARS---DKNEILTNVFRSKGVL  309 (479)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC---CHHHHHHHHHHCCEEE
T ss_conf             503099999999999985179944999974679---9899999998689899


No 301
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit; InterPro: IPR006443   This family of sequences describe a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex aeolicus. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilised mainly in the nitrate respiration by nitrate reductase . In Escherichia coli and Salmonella typhi, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in Escherichia coli which contain selenocysteine .; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0005737 cytoplasm.
Probab=41.00  E-value=19  Score=15.61  Aligned_cols=68  Identities=22%  Similarity=0.368  Sum_probs=45.9

Q ss_pred             CCEEEEEECCHHCCCH-HHHHHHCC---CC-EEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHH
Q ss_conf             3138665221000105-55654137---83-4764021233333453346631214431144431687458602578888
Q gi|254780673|r  278 GLKVVIPYTASDAKGL-LKAAIRDP---NP-VIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTY  352 (467)
Q Consensus       278 gl~V~~P~~~~d~~~l-l~~ai~~~---~P-vi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~  352 (467)
                      +|.+|+=+||+|..=+ ++.+|+..   +- +|.+.+  +|+|...+   -|...|      +|.|+|||.+.  .|+..
T Consensus       233 dli~v~GgNPAEnHP~gFkWai~Akek~GAkiI~iDP--RfnRTa~v---aDl~ap------iRsGsDIaFL~--G~i~Y  299 (1043)
T TIGR01553       233 DLILVMGGNPAENHPVGFKWAIKAKEKKGAKIIVIDP--RFNRTAAV---ADLYAP------IRSGSDIAFLN--GLIKY  299 (1043)
T ss_pred             CEEEECCCCCCCCCCCCCEEHHHHHCCCCCEEEEECC--CCCCCHHH---CEEEEE------CCCCCHHHHHH--HHHHH
T ss_conf             6889717787202676510022111137877999788--98710100---113321------68983388876--79999


Q ss_pred             HHHHHH
Q ss_conf             888875
Q gi|254780673|r  353 ATKAAI  358 (467)
Q Consensus       353 a~~aa~  358 (467)
                      .|+--.
T Consensus       300 ~Le~e~  305 (1043)
T TIGR01553       300 VLEKEK  305 (1043)
T ss_pred             HHHHCC
T ss_conf             874033


No 302
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=40.64  E-value=24  Score=14.98  Aligned_cols=42  Identities=19%  Similarity=0.303  Sum_probs=23.0

Q ss_pred             CCCCEEECCCCC-CCCCCHHHHHHCCCCHHHHH-HHHHHHHCCC
Q ss_conf             898299717778-88889667656089989999-9999985020
Q gi|254780673|r  422 DAPILTITGRDV-PMPYAANLEKLALPNVDEII-ESVESICYKR  463 (467)
Q Consensus       422 ~~p~~ri~~~d~-p~P~~~~le~~~~p~~~~I~-~av~~v~~~~  463 (467)
                      ++++.+|-.-|+ |.|.....+|....|...++ ++++++.+..
T Consensus       267 ~s~i~~ivvTdTi~~p~~~~~~ki~~lsva~llAeaI~ri~~~~  310 (321)
T PRK02269        267 KSAIEKLIVLDTIYLPEERLIDKIEQISIADLVAEAIIRIHEKR  310 (321)
T ss_pred             CCCCCEEEEECCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHCCC
T ss_conf             08998899808977864455898289876899999999986799


No 303
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=40.48  E-value=24  Score=14.96  Aligned_cols=148  Identities=15%  Similarity=0.114  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCC-CCHHHHHH-HH
Q ss_conf             01223554431136506999324344588665323647540811101166662789989999887188-64456666-67
Q gi|254780673|r  144 EALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGL-KPIVEFMT-FN  221 (467)
Q Consensus       144 ea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~-~Piv~~~~-~~  221 (467)
                      .++.+++.|.....+++++ -.|++=++        +..-|  -++-..--.-....++|.|+.++.- +.|+.++- .+
T Consensus        12 ~~~~~a~~~l~i~~~~~v~-vs~iGC~~--------~~~~~--~~~~~~~~~hG~a~~~A~G~k~a~p~~~Vva~~GDG~   80 (193)
T cd03375          12 KALAKALAELGIDPEKVVV-VSGIGCSS--------RLPYY--FNTYGFHTLHGRALAVATGVKLANPDLTVIVVSGDGD   80 (193)
T ss_pred             HHHHHHHHHHCCCCCCEEE-EECCCCCC--------CCCCH--HHCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEEECCH
T ss_conf             9999999981899667899-95877467--------66461--1158652021160888867987599973999970655


Q ss_pred             HHHHHHHHHHHHHHH-----------HHH-HCCCCCCCCEEEEEECCCCCC---CCH-HHHHHHHHHHH--HHCCCEEEE
Q ss_conf             899999999987886-----------742-117767888799830244576---444-43321688763--220313866
Q gi|254780673|r  222 FAMQAIDQIINSAAK-----------TRY-MSGGQITTSIVFRGPNGAAAR---VAA-QHSQCYAAWYS--HVPGLKVVI  283 (467)
Q Consensus       222 f~~~a~dqi~n~~ak-----------~~~-~~gg~~~~p~v~r~p~G~~~~---~g~-~Hs~~~~~~~~--~iPgl~V~~  283 (467)
                      |..-.+.+++|-+-+           ..| |+|||.+ |-+   |.|....   .|. ...-++..+..  +++-...+.
T Consensus        81 ~~~iG~~~l~~A~~rn~~i~~iv~DN~~ygmTGgQ~s-ptT---~~g~~t~ttp~G~~~~~~d~~~ia~a~G~~yVa~~~  156 (193)
T cd03375          81 LAAIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQAS-PTT---PEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGF  156 (193)
T ss_pred             HHHCCHHHHHHHHHHCCCEEEEEECCCCEECCCCCCC-CCC---CCCCEECCCCCCCCCCCCCHHHHHHHCCCCEEEEEC
T ss_conf             7645618899999809974999985840442368348-898---898554136778765788999999875998799965


Q ss_pred             EECCHHCCCHHHHHHHCCCCEEE
Q ss_conf             52210001055565413783476
Q gi|254780673|r  284 PYTASDAKGLLKAAIRDPNPVIF  306 (467)
Q Consensus       284 P~~~~d~~~ll~~ai~~~~Pvi~  306 (467)
                      |.++.+++..++.|++.++|.++
T Consensus       157 ~~~~~~l~~~ik~Al~~~G~s~I  179 (193)
T cd03375         157 SGDIKQLKEIIKKAIQHKGFSFV  179 (193)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             79999999999999808998899


No 304
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=40.11  E-value=24  Score=14.92  Aligned_cols=52  Identities=17%  Similarity=0.165  Sum_probs=26.1

Q ss_pred             CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
Q ss_conf             79999999998719899995788767678999999999677642898299717778888
Q gi|254780673|r  378 MDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMP  436 (467)
Q Consensus       378 ld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P  436 (467)
                      +|.+.|....+.+..+..+.-.....-+.+-+...+.++.       ++-|+.+.+|+.
T Consensus       359 i~~~~i~~f~~~~~~~~~~~~~~~~~P~aA~iGGiaAQEv-------iK~iT~kf~Pi~  410 (425)
T cd01493         359 ISDKEIKLFCKNAAFLRVIRGRSLEHNISAFMGGIAAQEV-------IKLITKQYVPID  410 (425)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-------HHHHCCCCCCCC
T ss_conf             8999999999865456543057784669999879999999-------998558850767


No 305
>PRK11798 ClpXP protease specificity-enhancing factor; Provisional
Probab=40.03  E-value=24  Score=14.91  Aligned_cols=55  Identities=16%  Similarity=0.308  Sum_probs=31.7

Q ss_pred             CCCEECCCCEEEEEE--------CCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             897625898599995--------37533343177786898998237885132697589994377772112
Q gi|254780673|r   26 EGDLIKQGDIIYEVE--------TDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEGETALDI   87 (467)
Q Consensus        26 ~GD~V~~gd~l~eiE--------TDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~ege~a~~~   87 (467)
                      +-+.|+.|+++.-|-        -|.-.+...|-++|+-.+|.       |++++++++..-|...+-..
T Consensus        40 P~~~v~dg~IvLNIsp~Av~~L~i~nd~isF~ARF~G~~~~i~-------vP~~aV~aIyArEnG~Gm~F  102 (140)
T PRK11798         40 PMEYVKDGQIVLNISPRAVGNLQLDNDAISFNARFGGVPRQIY-------VPIAAVLAIYARENGQGMMF  102 (140)
T ss_pred             CHHHCCCCEEEEECCHHHHHCEEECCCEEEEEEEECCEEEEEE-------EEHHHHHHHHHHCCCCCCCC
T ss_conf             9888019989997798886030775878999879799158999-------77899642530103787544


No 306
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=39.50  E-value=22  Score=15.20  Aligned_cols=37  Identities=24%  Similarity=0.251  Sum_probs=24.0

Q ss_pred             EECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             431687458602578888888875310046752797330
Q gi|254780673|r  335 HRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLR  373 (467)
Q Consensus       335 ~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r  373 (467)
                      +.+.+.+-+.|.|..-..+.+||..|.+.|..  |.+|+
T Consensus        61 l~~d~~iVvyC~~~~~~~s~~aA~~L~~~Gf~--V~~l~   97 (110)
T cd01521          61 LDKEKLFVVYCDGPGCNGATKAALKLAELGFP--VKEMI   97 (110)
T ss_pred             CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCC--EEECC
T ss_conf             79997189997899864179999999977997--48815


No 307
>pfam01451 LMWPc Low molecular weight phosphotyrosine protein phosphatase.
Probab=39.16  E-value=25  Score=14.82  Aligned_cols=91  Identities=16%  Similarity=0.196  Sum_probs=50.3

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC---
Q ss_conf             88887531004675279733006857999999999871989999578876767899999999967764289829971---
Q gi|254780673|r  353 ATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTIT---  429 (467)
Q Consensus       353 a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~---  429 (467)
                      ..++.+.|++.||+..-   +.-++|+.+.    +.....+|+++++..         ..+.+. |......+..++   
T Consensus        45 ~~~a~~vl~~~Gi~~~~---h~sr~l~~~~----~~~~DlIl~M~~~~~---------~~l~~~-~p~~~~k~~~l~~~~  107 (140)
T pfam01451        45 DPRAVEVLKEHGIDISG---HRARQITEEL----FNSFDLILTMDGEHA---------RQILPQ-APMVRGKVKLLGDPA  107 (140)
T ss_pred             CHHHHHHHHHHCCCCCC---CCCCCCCHHH----CCCCCEEEEECHHHH---------HHHHHH-CCCCCCEEEECCCCC
T ss_conf             98899999983975578---7445475444----787999999681688---------988611-876544687634414


Q ss_pred             -CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             -77788888966765608998999999999850
Q gi|254780673|r  430 -GRDVPMPYAANLEKLALPNVDEIIESVESICY  461 (467)
Q Consensus       430 -~~d~p~P~~~~le~~~~p~~~~I~~av~~v~~  461 (467)
                       ..|+|-||...++.+ --..+.|-++++....
T Consensus       108 ~~~~I~DP~~~~~~~f-~~~~~~I~~~v~~ll~  139 (140)
T pfam01451       108 EQLDIDDPYYGDEDGF-EEVRDEIEERSKKLLK  139 (140)
T ss_pred             CCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHC
T ss_conf             5999989999998999-9999999999999975


No 308
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=39.12  E-value=25  Score=14.82  Aligned_cols=99  Identities=19%  Similarity=0.231  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHH-HH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHH-HHHH-
Q ss_conf             89989999887188644566666789-99-99999987886742117767888799830244576444433216-8876-
Q gi|254780673|r  198 GFAGIGIGASFAGLKPIVEFMTFNFA-MQ-AIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHSQCY-AAWY-  273 (467)
Q Consensus       198 ~~~G~a~G~A~~G~~Piv~~~~~~f~-~~-a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs~~~-~~~~-  273 (467)
                      ..+|.|.++-+.|..-|+-..+.|=. .+ .|-.-+|.|+.        +++||+|..-+-...-.-+.+.|+. ..+. 
T Consensus       130 ~A~G~A~a~k~~~~~~V~v~ffGDGA~~eG~fhEalN~Aa~--------~~LPviFv~eNN~yaist~~~~~~~~~~i~~  201 (341)
T TIGR03181       130 HAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGV--------FKAPVVFFVQNNQWAISVPRSKQTAAPTLAQ  201 (341)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHH--------HCCCEEEEEEECCCCCCCCHHHHCCCCHHHH
T ss_conf             14778889987299988999946886432469999999998--------3899899996177357776334237736987


Q ss_pred             ----HHHCCCEEEEEECCHHCCCH---HHHHH---H-CCCCEEEECC
Q ss_conf             ----32203138665221000105---55654---1-3783476402
Q gi|254780673|r  274 ----SHVPGLKVVIPYTASDAKGL---LKAAI---R-DPNPVIFLEN  309 (467)
Q Consensus       274 ----~~iPgl~V~~P~~~~d~~~l---l~~ai---~-~~~Pvi~le~  309 (467)
                          -.||+++|    |.+|...+   .+.|+   | -.+|++ +|.
T Consensus       202 ra~~yGi~~~~v----DG~D~~av~~a~~~Av~~~R~g~gP~l-iE~  243 (341)
T TIGR03181       202 KAIAYGIPGVQV----DGNDVLAVYAVTKEAVERARSGGGPTL-IEA  243 (341)
T ss_pred             HHHHCCCCEEEC----CCCCHHHHHHHHHHHHHHHHCCCCCEE-EEE
T ss_conf             514249886744----885679999999999999855899889-999


No 309
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=38.99  E-value=25  Score=14.80  Aligned_cols=26  Identities=23%  Similarity=0.254  Sum_probs=13.1

Q ss_pred             CEEEEECCCCCCCCCCCCCCCHHHHCC
Q ss_conf             069993243445886653236475408
Q gi|254780673|r  159 DVFIMGEEVAEYQGAYKVTQGLLQEFG  185 (467)
Q Consensus       159 ~~~~~gedv~~~~g~f~~t~gl~~~fg  185 (467)
                      -+++.|..+... ++...-+.|.+++|
T Consensus       199 Pvil~G~gv~~~-~a~~~l~~lae~l~  224 (548)
T PRK08978        199 PVLYVGGGVGMA-QAVPALREFLAATG  224 (548)
T ss_pred             EEEEECCCCCCC-CHHHHHHHHHHHHC
T ss_conf             299999670401-58999999999859


No 310
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=38.81  E-value=25  Score=14.79  Aligned_cols=21  Identities=14%  Similarity=0.232  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             8888887531004675279733
Q gi|254780673|r  351 TYATKAAIELEKNGIDAELIDL  372 (467)
Q Consensus       351 ~~a~~aa~~L~~~gi~~~vid~  372 (467)
                      ..+..|++.|.+.|.. .|+|+
T Consensus        75 ~RS~~Aa~~L~~~Gf~-nV~ni   95 (117)
T cd01522          75 NRSIAAAEAAAQAGFT-NVYNV   95 (117)
T ss_pred             CHHHHHHHHHHHCCCC-CEEEE
T ss_conf             1599999999985987-77981


No 311
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=38.36  E-value=26  Score=14.74  Aligned_cols=69  Identities=14%  Similarity=0.143  Sum_probs=45.6

Q ss_pred             EEEEECCCCCCCCHHHH-------HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCC
Q ss_conf             27973300685799999-------99998719899995788767678999999999677642898299717778--8888
Q gi|254780673|r  367 AELIDLRTIRPMDWQTI-------FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPY  437 (467)
Q Consensus       367 ~~vid~r~l~Pld~~~i-------~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~  437 (467)
                      -.-+.=.+|.|=+.+.-       ++++-|-+++|+|||+...|--...|...|-+-+-   +.--.|+++|.+  |+.|
T Consensus       304 n~y~gRtFI~P~qR~~~v~~Kl~~~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGA---keVh~ri~sPpi~~pC~y  380 (442)
T PRK08341        304 NRYIGRTFIMPSGRELKVKLKLSPVREVINGKRVVLVDDSIVRGTTMKRIVKMLRDAGA---REVHVRIASPPIRYPCYM  380 (442)
T ss_pred             CCCCCCCCCCCCCHHHCEEEEEEEEEEEECCCCEEEEECCEEECCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCC
T ss_conf             01215544388730021044650100012798149961434105429999999997699---889999689985777767


Q ss_pred             C
Q ss_conf             9
Q gi|254780673|r  438 A  438 (467)
Q Consensus       438 ~  438 (467)
                      +
T Consensus       381 G  381 (442)
T PRK08341        381 G  381 (442)
T ss_pred             C
T ss_conf             6


No 312
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=37.90  E-value=26  Score=14.69  Aligned_cols=46  Identities=24%  Similarity=0.320  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCC-CCCEECCC
Q ss_conf             12235544311365069993243445886653236475408-11101166
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFG-CERVIDTP  193 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg-~~R~~d~p  193 (467)
                      |+..++...++....++ ...++  |||.+..-...+.+|| .-+++|.-
T Consensus        91 Ais~~l~~ll~~Gd~iv-~~~~~--YggT~~l~~~~l~~~Gi~~~~vd~~  137 (433)
T PRK08134         91 ALHLAIATLMGAGSHIV-ASSAL--YGGSHNLLHYTLPRFGIETTFVKPR  137 (433)
T ss_pred             HHHHHHHHHCCCCCEEE-ECCCE--ECCHHHHHHHHHHHCCEEEEEECCC
T ss_conf             99999997489999899-71880--7737999998776348379998897


No 313
>KOG3424 consensus
Probab=37.89  E-value=26  Score=14.69  Aligned_cols=56  Identities=18%  Similarity=0.394  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHCCCCC-EEEEECCCCCCCCC----CC---CCCCHHHHCCCC-CEECCCCCHHHH
Q ss_conf             00122355443113650-69993243445886----65---323647540811-101166662789
Q gi|254780673|r  143 REALRDAIAEEMRRDKD-VFIMGEEVAEYQGA----YK---VTQGLLQEFGCE-RVIDTPITEHGF  199 (467)
Q Consensus       143 Rea~~~a~~e~m~~d~~-~~~~gedv~~~~g~----f~---~t~gl~~~fg~~-R~~d~pi~E~~~  199 (467)
                      .+-||+-|++....+|+ ||+||--- .|||-    |+   -|.....+|-|. |+.-.+++|..-
T Consensus        37 K~EIrEKlA~mYkt~~d~V~vfgfrt-~fGggkstgfalIYdsie~akkfEpkyrl~r~gl~e~~k  101 (132)
T KOG3424          37 KTEIREKLAKMYKTTPDAVFVFGFRT-HFGGGKSTGFALIYDSVEYAKKFEPKYRLVRLGLAEKIK  101 (132)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEEEEE-CCCCCCCCEEEEEEEHHHHHHHCCCCEEEECCCCCHHCC
T ss_conf             89999999999647877089988641-147865440456430589987248522300104411201


No 314
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=37.88  E-value=17  Score=15.98  Aligned_cols=22  Identities=41%  Similarity=0.371  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             8888888875310046752797
Q gi|254780673|r  349 GMTYATKAAIELEKNGIDAELI  370 (467)
Q Consensus       349 ~~~~a~~aa~~L~~~gi~~~vi  370 (467)
                      .+.+.++||+.|+++||.|.+-
T Consensus       139 sTWEGI~Aa~~Le~eGI~cNlT  160 (391)
T PRK12309        139 STWEGIKAAEVLEKEGIHCNLT  160 (391)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEE
T ss_conf             8789999999998659604366


No 315
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=37.85  E-value=26  Score=14.68  Aligned_cols=146  Identities=18%  Similarity=0.219  Sum_probs=86.5

Q ss_pred             CCCCCCEECCCCCEEEEE-CCCCCEEEEHH-HHHHHHHHHHHHHHCCCC---CEEEEECCCCCCCCHHH--HHHHHHHCC
Q ss_conf             334663121443114443-16874586025-788888888753100467---52797330068579999--999998719
Q gi|254780673|r  319 VPMVDDLVIPIGRARIHR-QGSDVTIISFG-IGMTYATKAAIELEKNGI---DAELIDLRTIRPMDWQT--IFESVKKTG  391 (467)
Q Consensus       319 ~p~~~~~~~p~Gk~~i~~-~G~ditii~~G-~~~~~a~~aa~~L~~~gi---~~~vid~r~l~Pld~~~--i~~sv~kt~  391 (467)
                      +|.+.-+..|+.-..+.+ .-++.+||+-- ..+..|...|+.|...++   ..-+++-|-.+|=..+.  +.-.|+ -+
T Consensus       262 IPVDnL~a~pll~~y~~~~~l~n~VVVSPD~GgvkRAr~~A~~L~~~~i~d~~lAii~KrR~~~neve~m~iIGDVk-GK  340 (443)
T PTZ00145        262 VPVDNLEAQLIGLDYFTKKDLYKPVIVSPDAGGVYRARKFQDGLNHRGIGDCGIAMLIKQRTKPNEIEKMDLVGNVY-DS  340 (443)
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCC-CC
T ss_conf             86213652476799998459988889838997499999999985545567886599996559999366535575027-98


Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHH-----------------HHC-CCCCEEECCCCCCCCCCHH---HHHHCCCCHH
Q ss_conf             899995788767678999999999677-----------------642-8982997177788888966---7656089989
Q gi|254780673|r  392 RLVTVEEGYPQSSVGSTIANQVQRKVF-----------------DYL-DAPILTITGRDVPMPYAAN---LEKLALPNVD  450 (467)
Q Consensus       392 ~~i~vee~~~~gg~g~~i~~~i~e~~f-----------------~~L-~~p~~ri~~~d~p~P~~~~---le~~~~p~~~  450 (467)
                      .+|+||+=.-+||-=..-+..+.+++-                 ..| ++++..|-.-|+ +|....   .+|-...|..
T Consensus       341 ~~IIVDDmIDTgGTL~~AA~~Lke~GAk~VyA~aTHGVfSg~AierI~~S~I~evVVTDT-Ip~~~~~~~~~KI~vLSVA  419 (443)
T PTZ00145        341 DVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIDRIEKSPLEEVVVTDT-VKSNKNIDSCKKITKLSVS  419 (443)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEECCC-CCCCCCCCCCCCCEEEEHH
T ss_conf             789967743455679999999996799879999977307854898975489978998788-5783100238995798768


Q ss_pred             HHH-HHHHHHHCCCCCC
Q ss_conf             999-9999985020026
Q gi|254780673|r  451 EII-ESVESICYKRKAK  466 (467)
Q Consensus       451 ~I~-~av~~v~~~~~~~  466 (467)
                      .++ ++++++.+..-++
T Consensus       420 ~LlAEAIrRIh~~eSVS  436 (443)
T PTZ00145        420 VLVADAIRRIHQKESLN  436 (443)
T ss_pred             HHHHHHHHHHHCCCCHH
T ss_conf             99999999861899789


No 316
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=37.81  E-value=26  Score=14.68  Aligned_cols=47  Identities=15%  Similarity=0.150  Sum_probs=26.5

Q ss_pred             EHHHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf             025788888888753100--46752797330068579999999998719899
Q gi|254780673|r  345 SFGIGMTYATKAAIELEK--NGIDAELIDLRTIRPMDWQTIFESVKKTGRLV  394 (467)
Q Consensus       345 ~~G~~~~~a~~aa~~L~~--~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i  394 (467)
                      .||++-..|...++-|.+  +|+.++++|+..-.   ...|+..+.+.+.++
T Consensus       257 myG~T~~mA~aia~gl~~~~~gv~V~~~d~~~~~---~s~i~~~i~~a~~~i  305 (395)
T PRK11921        257 MWNSTRRMAEAIAEGIKKANPDVTVKLFNSAKSD---KNDIITEVFKSKAIL  305 (395)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC---HHHHHHHHHHCCCEE
T ss_conf             6067999999999999840899669999898899---999999998669589


No 317
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=37.75  E-value=26  Score=14.67  Aligned_cols=13  Identities=38%  Similarity=0.534  Sum_probs=7.5

Q ss_pred             CCEEEEHHHHHHH
Q ss_conf             7458602578888
Q gi|254780673|r  340 DVTIISFGIGMTY  352 (467)
Q Consensus       340 ditii~~G~~~~~  352 (467)
                      |+.|++.|..-+.
T Consensus       231 D~VivaiGv~Pnt  243 (400)
T PRK09754        231 DVVIYGIGISAND  243 (400)
T ss_pred             CEEEECCCCCCCH
T ss_conf             8999897675375


No 318
>cd01856 YlqF YlqF.  Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=37.70  E-value=26  Score=14.67  Aligned_cols=54  Identities=11%  Similarity=0.098  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHHCCCEEEEEECCH
Q ss_conf             899999999987886742117767888799830244576444-4332168876322031386652210
Q gi|254780673|r  222 FAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAA-QHSQCYAAWYSHVPGLKVVIPYTAS  288 (467)
Q Consensus       222 f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~-~Hs~~~~~~~~~iPgl~V~~P~~~~  288 (467)
                      +..++..|+-+.+-.          ..+++-.-.++.   +- +....++.++..-|=+-|+.=+|..
T Consensus         5 hm~k~~~~~~~~l~~----------sDlIl~V~DaR~---pl~~~~~~l~~~~~~K~~ilV~NK~DL~   59 (171)
T cd01856           5 HMAKALRQIKEKLKL----------VDLVIEVRDARI---PLSSRNPLLEKILGNKPRIIVLNKADLA   59 (171)
T ss_pred             HHHHHHHHHHHHHHH----------CCEEEEEEECCC---CCCCCCHHHHHHHCCCCEEEEEECCCCC
T ss_conf             899999999999986----------999999998988---8876528999997689889998555558


No 319
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854    This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=37.49  E-value=17  Score=15.99  Aligned_cols=44  Identities=20%  Similarity=0.479  Sum_probs=30.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q ss_conf             662789989999887188644566666------7899999999987886742
Q gi|254780673|r  194 ITEHGFAGIGIGASFAGLKPIVEFMTF------NFAMQAIDQIINSAAKTRY  239 (467)
Q Consensus       194 i~E~~~~G~a~G~A~~G~~Piv~~~~~------~f~~~a~dqi~n~~ak~~~  239 (467)
                      |=.=++-|+.-=+||.|-||.  |++.      .|.+--+++|+..+++.-.
T Consensus        72 IGkLAVcGTvNDvav~GA~P~--YLs~gfIlEEGfp~e~L~~iv~Sm~~~A~  121 (345)
T TIGR02124        72 IGKLAVCGTVNDVAVSGAKPL--YLSCGFILEEGFPIEDLERIVKSMAEAAR  121 (345)
T ss_pred             CCCEEEECCHHHHHHCCCHHH--HHCCCEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             111777333246753384457--85072013407876789999999999999


No 320
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=37.47  E-value=26  Score=14.67  Aligned_cols=29  Identities=28%  Similarity=0.259  Sum_probs=20.1

Q ss_pred             HHHHCCCEEEEEECCHHCCCHHHHHHHCC
Q ss_conf             63220313866522100010555654137
Q gi|254780673|r  273 YSHVPGLKVVIPYTASDAKGLLKAAIRDP  301 (467)
Q Consensus       273 ~~~iPgl~V~~P~~~~d~~~ll~~ai~~~  301 (467)
                      |.++-|.+||+-.=.--+=..+++|||..
T Consensus       287 ~~~~~Gk~VVVLGGGDTaMDCvRTaiR~G  315 (480)
T TIGR01318       287 LIDVEGKRVVVLGGGDTAMDCVRTAIRLG  315 (480)
T ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf             42347766898588875257889999817


No 321
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=37.11  E-value=27  Score=14.61  Aligned_cols=88  Identities=15%  Similarity=0.149  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHC---CCC-CEEEEECCCCCCCCHH---HH------HHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             788888888753100---467-5279733006857999---99------9999871989999578876767899999999
Q gi|254780673|r  348 IGMTYATKAAIELEK---NGI-DAELIDLRTIRPMDWQ---TI------FESVKKTGRLVTVEEGYPQSSVGSTIANQVQ  414 (467)
Q Consensus       348 ~~~~~a~~aa~~L~~---~gi-~~~vid~r~l~Pld~~---~i------~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~  414 (467)
                      +....|+.-|+.+.-   +|+ .-.-+.=.||.|=+..   .+      ++++-|-+|+|+|||+...|--...|...+-
T Consensus       303 Sg~~aA~gya~~sgipy~~gliKNrYvgRTFI~P~q~~R~~~vr~Kln~i~~~i~gK~vvlVDDSIVRGtT~k~Iv~~Lr  382 (503)
T PRK09246        303 TSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTTSEQIVQMAR  382 (503)
T ss_pred             CCHHHHHHHHHHCCCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHCEECCHHHCCCCEEEEEECCEECCCCHHHHHHHHH
T ss_conf             71889999999719961201210365576776986889998676520036431569769998455311641999999999


Q ss_pred             HHHHHHCCCCCEEECCCCC--CCCCC
Q ss_conf             9677642898299717778--88889
Q gi|254780673|r  415 RKVFDYLDAPILTITGRDV--PMPYA  438 (467)
Q Consensus       415 e~~f~~L~~p~~ri~~~d~--p~P~~  438 (467)
                      +.+-   +.--.|+++|.+  |+.|+
T Consensus       383 ~aGA---keVh~riasPpi~~Pc~yG  405 (503)
T PRK09246        383 DAGA---KKVYFASAAPPVRYPNVYG  405 (503)
T ss_pred             HCCC---CEEEEEECCCCCCCCCCCC
T ss_conf             7599---8899996799857877673


No 322
>TIGR02104 pulA_typeI pullulanase, type I; InterPro: IPR011840    Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the entries in IPR011838 from INTERPRO and IPR011839 from INTERPRO but having a different domain architecture with shorter sequences. Members are called type I pullulanases ..
Probab=37.01  E-value=21  Score=15.30  Aligned_cols=33  Identities=12%  Similarity=0.106  Sum_probs=24.5

Q ss_pred             CEEEEEECCCCEEEEECCCCCEEEEEEECCCCC
Q ss_conf             859999537533343177786898998237885
Q gi|254780673|r   34 DIIYEVETDKAVMEVESIDEGILGKILCPNGTK   66 (467)
Q Consensus        34 d~l~eiETDKat~EV~A~~~G~i~~ilv~eG~e   66 (467)
                      +.=++-.-+|.++-|=||.+=.|.=+|.+.+++
T Consensus        12 ~LG~~Y~~~~T~F~~WaPtA~~V~l~lY~~~~~   44 (655)
T TIGR02104        12 ELGAVYTPEKTTFRVWAPTATEVKLLLYKSGED   44 (655)
T ss_pred             EEEEEECCCCCEEEEECCCCCEEEEEEEECCCC
T ss_conf             140288677468998668555689999713688


No 323
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit; InterPro: IPR012754   DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel.   RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise:  RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors.  RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs.  Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits.   This entry represents the beta-prime subunit, RpoC, found in most bacteria. It excludes some, mainly cyanobacterial, species where RpoC is replaced by two homologous proteins that include an additional domain. One arm of the "claw" is predominantly formed by this subunit, the other being predominantly formed by the beta subunit. The active site of the enzyme is defined by three invariant aspartate residues within the beta-prime subunit .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=37.00  E-value=26  Score=14.73  Aligned_cols=24  Identities=33%  Similarity=0.358  Sum_probs=13.2

Q ss_pred             CCCEEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf             786898998237885132697589994
Q gi|254780673|r   52 DEGILGKILCPNGTKNVKVNTPIAAIL   78 (467)
Q Consensus        52 ~~G~i~~ilv~eG~e~V~VG~~ia~i~   78 (467)
                      ..|++  |+|.+| +.|.-|++||.++
T Consensus      1186 ~~G~~--i~V~~g-~~V~~G~~~aefD 1209 (1552)
T TIGR02386      1186 KLGTK--ILVEDG-DAVKEGQRIAEFD 1209 (1552)
T ss_pred             CCCCE--EEEECC-CCCCCCCEEEEEC
T ss_conf             65668--886158-6205887578844


No 324
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=36.93  E-value=27  Score=14.59  Aligned_cols=11  Identities=9%  Similarity=0.452  Sum_probs=4.7

Q ss_pred             CCCEEEEEECC
Q ss_conf             88879983024
Q gi|254780673|r  246 TTSIVFRGPNG  256 (467)
Q Consensus       246 ~~p~v~r~p~G  256 (467)
                      .-|++++...|
T Consensus       151 GyPV~lKAa~G  161 (471)
T PRK07178        151 GYPVMLKATSG  161 (471)
T ss_pred             CCCEEEEECCC
T ss_conf             98158632026


No 325
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=36.89  E-value=27  Score=14.58  Aligned_cols=18  Identities=17%  Similarity=0.202  Sum_probs=9.8

Q ss_pred             CCCEEEEEC----CCCCCCHHH
Q ss_conf             198999957----887676789
Q gi|254780673|r  390 TGRLVTVEE----GYPQSSVGS  407 (467)
Q Consensus       390 t~~~i~vee----~~~~gg~g~  407 (467)
                      .+|++.+=|    ..+.+|-|-
T Consensus       278 ~~rv~LiGDAAH~~~P~aGQG~  299 (384)
T PRK08849        278 KNNCVLLGDAAHTINPLAGQGV  299 (384)
T ss_pred             CCCEEEECCHHHCCCCCCCCCH
T ss_conf             6888997252334697212524


No 326
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=36.56  E-value=27  Score=14.55  Aligned_cols=31  Identities=19%  Similarity=0.328  Sum_probs=12.6

Q ss_pred             EEEEECCCCCCCCCCCCCCCHHHHCCCCCEECC
Q ss_conf             699932434458866532364754081110116
Q gi|254780673|r  160 VFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDT  192 (467)
Q Consensus       160 ~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~  192 (467)
                      +++.|..+. ..++.+.-..|.+++| --|+.|
T Consensus       214 vii~G~g~~-~~~a~~~l~~lae~l~-iPv~tt  244 (566)
T PRK07282        214 VILAGGGIN-YAEAAKELVEFAERYQ-IPVVTS  244 (566)
T ss_pred             EEEECCCCC-HHHHHHHHHHHHHHHC-CCEEEE
T ss_conf             899888837-2459999999999869-989950


No 327
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase; InterPro: IPR011282   This entry represents a narrowly defined clade of animal and bacterial (almost exclusively proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homologue from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.; GO: 0008890 glycine C-acetyltransferase activity.
Probab=36.48  E-value=28  Score=14.54  Aligned_cols=122  Identities=19%  Similarity=0.238  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHC--CCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCC--CCCEECCCCCEEEEEC-CCCC
Q ss_conf             21688763220--31386652210001055565413783476402123333345334--6631214431144431-6874
Q gi|254780673|r  267 QCYAAWYSHVP--GLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFEVPM--VDDLVIPIGRARIHRQ-GSDV  341 (467)
Q Consensus       267 ~~~~~~~~~iP--gl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~~p~--~~~~~~p~Gk~~i~~~-G~di  341 (467)
                      ..+|.-++..=  -=+|++||+.----||+++.+-..+-||-          -..+.  .-|- +.+=||+.+|- -.|.
T Consensus        88 K~LE~~iA~F~~~EDtILY~scFDANgGlFE~LLg~eDAiiS----------DaLNHASIIDG-vRLCKAkrYRY~~~dm  156 (395)
T TIGR01822        88 KELEAKIAAFLGTEDTILYASCFDANGGLFETLLGEEDAIIS----------DALNHASIIDG-VRLCKAKRYRYANNDM  156 (395)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHCCCCCCCHH----------HHHCCCHHHHH-HHHHHHHHHHHHCCCH
T ss_conf             899999999716530445456663055422010475442210----------22243102300-3542233432305888


Q ss_pred             EEEEHHHHHHHHHHH--HHHHHCCCCCEE-EEEC-CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf             586025788888888--753100467527-9733-00685799999999987198999957887676789
Q gi|254780673|r  342 TIISFGIGMTYATKA--AIELEKNGIDAE-LIDL-RTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGS  407 (467)
Q Consensus       342 tii~~G~~~~~a~~a--a~~L~~~gi~~~-vid~-r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~  407 (467)
                      .=+-  ..+++|.+.  ...|    |..+ |+.| =.|.|||  .|.....|++.||.|||++-+|=+|.
T Consensus       157 ~dLe--~~L~~A~~~Gar~~L----i~tDGvFSMDG~iA~L~--~i~~LA~~Y~ALv~~DecHA~GflG~  218 (395)
T TIGR01822       157 ADLE--AQLKEAQAAGARHRL----IATDGVFSMDGTIAPLD--EICDLADKYDALVMVDECHATGFLGA  218 (395)
T ss_pred             HHHH--HHHHHHHHCCCCEEE----EEECCEEECCCCEECHH--HHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf             8999--999999973895899----86466020687310767--89999985598788744334233278


No 328
>PRK06460 hypothetical protein; Provisional
Probab=36.48  E-value=28  Score=14.54  Aligned_cols=46  Identities=13%  Similarity=0.396  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCC
Q ss_conf             1223554431136506999324344588665323647540811-101166
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTP  193 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~p  193 (467)
                      |+.-++...++....++ ...++  |||.+..-++++.+||=+ +++|.-
T Consensus        72 Ai~~~l~~~l~~Gdhiv-~~~~~--Yg~t~~l~~~~l~~~Gv~v~~~d~~  118 (375)
T PRK06460         72 AISTTLLTLLKPGSSVL-IHRDM--FGRSYRFFTDFLRNWGVKVEVARPG  118 (375)
T ss_pred             HHHHHHHHHHCCCCEEE-ECCCC--CCCHHHHHHHHHHHCCEEEEEECCC
T ss_conf             99999999728999899-71787--5867999999987378677973899


No 329
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=36.39  E-value=28  Score=14.53  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=12.6

Q ss_pred             CCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCC
Q ss_conf             4431144431687458602578888888875310046
Q gi|254780673|r  328 PIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNG  364 (467)
Q Consensus       328 p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~g  364 (467)
                      |+|+.--..+.+++.+|+=|..+---+..++.|.+.|
T Consensus        87 PlG~~f~~~~~~~~llVaGGiG~APl~~la~~l~~~g  123 (248)
T cd06219          87 PLGKPSEIENYGTVVFVGGGVGIAPIYPIAKALKEAG  123 (248)
T ss_pred             CCCCCCCCCCCCEEEEECCCEECCCHHHHHHHHHHCC
T ss_conf             6888745078961999847352253599999999879


No 330
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein; InterPro: IPR013459   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of the gene in Rhizobium leguminosarum  abolishes rhamnose transport and prevents growth on rhamnose as a carbon source..
Probab=36.32  E-value=22  Score=15.25  Aligned_cols=120  Identities=20%  Similarity=0.125  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHH-HHHHHHCCCCCHHHHHHHHH
Q ss_conf             01223554431136506999324344588665323647540811101166662789989-99988718864456666678
Q gi|254780673|r  144 EALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGI-GIGASFAGLKPIVEFMTFNF  222 (467)
Q Consensus       144 ea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~-a~G~A~~G~~Piv~~~~~~f  222 (467)
                      +||--|+...|+|+=.|+-|.=||.+                .-|-+-.-=|....+|- .+=++..-+.    .-..+|
T Consensus        68 dAlvpalkkA~~rgI~Vv~~DS~v~p----------------egR~l~~n~a~~~~IG~~~vql~A~~~~----~~kG~~  127 (307)
T TIGR02637        68 DALVPALKKAMKRGIKVVTWDSGVAP----------------EGRKLFLNQADAELIGRTQVQLAAEQLE----EGKGEI  127 (307)
T ss_pred             CHHHHHHHHHHHCCCEEEEECCCCCC----------------CCCEEEECCCCHHHHHHHHHHHHHHHHC----CCCCCE
T ss_conf             22789999998569829985278881----------------3454422646831288999999999717----898858


Q ss_pred             HHH-HHHHHHHHHHHHHHHC----CC-CCCCCEEEEEECCCCCCCCHHHHH-HHHHHHHHHCCCEE-EEEECC
Q ss_conf             999-9999998788674211----77-678887998302445764444332-16887632203138-665221
Q gi|254780673|r  223 AMQ-AIDQIINSAAKTRYMS----GG-QITTSIVFRGPNGAAARVAAQHSQ-CYAAWYSHVPGLKV-VIPYTA  287 (467)
Q Consensus       223 ~~~-a~dqi~n~~ak~~~~~----gg-~~~~p~v~r~p~G~~~~~g~~Hs~-~~~~~~~~iPgl~V-~~P~~~  287 (467)
                      +.+ |-.---|+-+=..+|-    .- .-.+.+|-.    .++.+-.+-|- .=..+|.+-|||+. ++|.|.
T Consensus       128 AILSAa~T~tNQN~WI~~mK~~Lk~p~y~~~kLV~~----vYGDD~~~KS~~ea~GLl~s~PNlK~IiaPTTV  196 (307)
T TIGR02637       128 AILSAASTATNQNAWIEIMKKELKDPKYPKVKLVAV----VYGDDDAEKSYQEAQGLLKSYPNLKGIIAPTTV  196 (307)
T ss_pred             EEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE----EECCCCHHHHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf             885033100146799999997547877888307999----846780341188861365428971278787638


No 331
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=36.21  E-value=28  Score=14.51  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH-HHHH-HHHHHHCCCEEEEEECCHHCCCHHHHHH
Q ss_conf             7899999999987886742117767888799830244576444433-2168-8763220313866522100010555654
Q gi|254780673|r  221 NFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQHS-QCYA-AWYSHVPGLKVVIPYTASDAKGLLKAAI  298 (467)
Q Consensus       221 ~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~~-~~~~~iPgl~V~~P~~~~d~~~ll~~ai  298 (467)
                      +|.-=..++....+++...-+.|....|+.+-|+    .|.|-+|- |... ..+.+-|+.+|++-+... ...-+-.++
T Consensus        88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~----~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~-f~~~~v~a~  162 (408)
T COG0593          88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGG----VGLGKTHLLQAIGNEALANGPNARVVYLTSED-FTNDFVKAL  162 (408)
T ss_pred             HEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECC----CCCCHHHHHHHHHHHHHHHCCCCEEEECCHHH-HHHHHHHHH
T ss_conf             2204774499999999987566886895799879----99978999999999998629986488504899-899999998


Q ss_pred             HC
Q ss_conf             13
Q gi|254780673|r  299 RD  300 (467)
Q Consensus       299 ~~  300 (467)
                      ++
T Consensus       163 ~~  164 (408)
T COG0593         163 RD  164 (408)
T ss_pred             HH
T ss_conf             85


No 332
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=36.18  E-value=28  Score=14.51  Aligned_cols=28  Identities=14%  Similarity=0.304  Sum_probs=13.2

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             52797330068579999999998719899995
Q gi|254780673|r  366 DAELIDLRTIRPMDWQTIFESVKKTGRLVTVE  397 (467)
Q Consensus       366 ~~~vid~r~l~Pld~~~i~~sv~kt~~~i~ve  397 (467)
                      +++++|.-+.-    -.++.......++|+||
T Consensus        32 ~v~~id~gt~g----~~ll~~~~~~~~vIiVD   59 (146)
T cd06063          32 HVRLVDCGTAG----MEVMFRARGAKQLIIID   59 (146)
T ss_pred             CEEEEECCCCH----HHHHHHHCCCCEEEEEE
T ss_conf             85999888836----88886433788379999


No 333
>PRK13984 putative oxidoreductase; Provisional
Probab=35.78  E-value=28  Score=14.47  Aligned_cols=57  Identities=18%  Similarity=0.201  Sum_probs=38.0

Q ss_pred             EEEECCCCCEEEEHHHHHHHHHHHHHHHHCC---CCCEEEEECC-C--CCCCCHHHHHHHHHH
Q ss_conf             4443168745860257888888887531004---6752797330-0--685799999999987
Q gi|254780673|r  333 RIHRQGSDVTIISFGIGMTYATKAAIELEKN---GIDAELIDLR-T--IRPMDWQTIFESVKK  389 (467)
Q Consensus       333 ~i~~~G~ditii~~G~~~~~a~~aa~~L~~~---gi~~~vid~r-~--l~Pld~~~i~~sv~k  389 (467)
                      ....-|+.+.+|+=|++-..|...|..|...   ..++.++..| +  -.|-+.+.+..+.+.
T Consensus       413 ~~~~~gK~VVVIGGGnTAmDcaRTA~Rl~a~~~Ga~~V~vv~yrR~~~eMPA~~~Ev~~A~EE  475 (604)
T PRK13984        413 PKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGKVNVTVTSLERTFEEMPADMEEIEEGLEE  475 (604)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHCCCCHHHHHHHHHC
T ss_conf             766669758998981889999999987301324774305517878734289988988999868


No 334
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.63  E-value=28  Score=14.45  Aligned_cols=14  Identities=0%  Similarity=0.100  Sum_probs=6.4

Q ss_pred             CHHHHHHHHHHHHC
Q ss_conf             98999999999850
Q gi|254780673|r  448 NVDEIIESVESICY  461 (467)
Q Consensus       448 ~~~~I~~av~~v~~  461 (467)
                      +.+++-.++++.+.
T Consensus       536 ~~~eL~~al~~Al~  549 (587)
T PRK06965        536 KTSDVEPALKEALR  549 (587)
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             99999999999986


No 335
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein; InterPro: IPR005696    Bacteriocins are antibacterial proteinaceous compounds produced by bacteria. In Gram-positive bacteria, they are divided into four classes. Within the class II, constituted by non-modified peptides produced mainly by lactic acid bacteria, bacteriocins of the subclass IIa, such as mesentericin Y105, are of particular interest. They are active against the foodborne pathogen Listeria monocytogenes and share a similar primary structure, with a conserved N-terminal motif (YGNGV). Subclass IIa bacteriocins induce membrane permeabilization of sensitive strains, but their target specificity and their molecular mode of action remain elusive. This family of proteins is involved in the secretion of such bacteriocins although the mechanism of this process is not well understood. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=35.49  E-value=13  Score=16.95  Aligned_cols=44  Identities=14%  Similarity=0.164  Sum_probs=31.5

Q ss_pred             EEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCC
Q ss_conf             999537533343177786898998237885132697589994377
Q gi|254780673|r   37 YEVETDKAVMEVESIDEGILGKILCPNGTKNVKVNTPIAAILQEG   81 (467)
Q Consensus        37 ~eiETDKat~EV~A~~~G~i~~ilv~eG~e~V~VG~~ia~i~~eg   81 (467)
                      ++|++-|..-.+=|+..-.|.+-.-.|| ..|+-|+.|.......
T Consensus        52 g~~~p~~~~~~iQst~n~~I~~N~L~En-k~VKKG~~Lv~y~~~~   95 (476)
T TIGR01000        52 GSIEPAKVIAKIQSTSNNAIKENYLKEN-KFVKKGDLLVVYTNTN   95 (476)
T ss_pred             EEECCCCCCHHHCCCCCCHHHHHHHHHC-CEEECCCEEEEEECCH
T ss_conf             2661432012122884214565133209-7883387899971743


No 336
>TIGR00107 deoD purine nucleoside phosphorylase; InterPro: IPR004402 Purine nucleoside phosphorylase 2.4.2.1 from EC also called inosine phosphorylase (pnp) cleave guanosine or inosine to respective bases and sugar-1-phosphate molecules. These enzymes are involved in the salvage of nucleotides and nucleosides.; GO: 0004731 purine-nucleoside phosphorylase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=35.17  E-value=29  Score=14.40  Aligned_cols=57  Identities=25%  Similarity=0.207  Sum_probs=40.7

Q ss_pred             CCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCC---CCCCHHHHHHHHHHCCCEEEEECC
Q ss_conf             8745860257888888887531004675279733006---857999999999871989999578
Q gi|254780673|r  339 SDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTI---RPMDWQTIFESVKKTGRLVTVEEG  399 (467)
Q Consensus       339 ~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l---~Pld~~~i~~sv~kt~~~i~vee~  399 (467)
                      .|...++--.++..|.++|+.+   |++..|=++-|-   .-.|.+ .++..+|.+.|=|==|.
T Consensus       122 ~D~~~~Adf~L~~~A~~tAk~~---g~~~~vG~vF~~D~FY~~~~~-~~~~~~ky~~LaVEMEA  181 (234)
T TIGR00107       122 EDFAAIADFELVELAYDTAKAL---GIDVRVGNVFSADAFYSPDKD-VFDLMAKYGILAVEMEA  181 (234)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHC---CCCEEECCEECCCCCCCCCHH-HHHHHHHCCCCEEHHHH
T ss_conf             4433478989999999999867---972776523311113074488-99999875987223768


No 337
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=35.16  E-value=29  Score=14.40  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=17.3

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC
Q ss_conf             6506999324344588665323647540811101166
Q gi|254780673|r  157 DKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP  193 (467)
Q Consensus       157 d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p  193 (467)
                      ..-+++.|..+... ++...-..|.+++|- .|+.|+
T Consensus       199 krPvii~G~g~~~~-~a~~~l~~lae~lg~-Pv~tt~  233 (553)
T PRK08199        199 ERPLVILGGSGWTP-AAVADLRAFAERWGL-PVATAF  233 (553)
T ss_pred             CCCEEEECCCCCCH-HHHHHHHHHHHHHCC-CEEECC
T ss_conf             89889937873554-799999999998598-889514


No 338
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=34.96  E-value=29  Score=14.38  Aligned_cols=32  Identities=34%  Similarity=0.403  Sum_probs=21.7

Q ss_pred             EEEEHHHHHHHHHHHHHH----HHCCCCCEEEEECC
Q ss_conf             586025788888888753----10046752797330
Q gi|254780673|r  342 TIISFGIGMTYATKAAIE----LEKNGIDAELIDLR  373 (467)
Q Consensus       342 tii~~G~~~~~a~~aa~~----L~~~gi~~~vid~r  373 (467)
                      -||++|+.+-.+.-++++    |+++||++++...+
T Consensus         5 IlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~   40 (94)
T PRK10310          5 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR   40 (94)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             999858837599999999999999859806899974


No 339
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=34.94  E-value=29  Score=14.38  Aligned_cols=49  Identities=20%  Similarity=0.342  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCCCCH
Q ss_conf             1223554431136506999324344588665323647540811-101166662
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTPITE  196 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~pi~E  196 (467)
                      |+.-++...++....++ ...++  |||.+..-+.++.+||=+ +++|..--|
T Consensus        92 Ai~~~lla~l~~Gdhiv-~~~~~--Yg~t~~l~~~~l~~~Gi~~~~vd~~d~~  141 (397)
T PRK07504         92 AVTAAILCQLKAGDHVV-AARAL--FGSCRYVVETLLPRYGIESTLVDGLDLD  141 (397)
T ss_pred             HHHHHHHHHCCCCCEEE-ECCCC--CHHHHHHHHHHHHCCCEEEEEECCCCHH
T ss_conf             99999998558999898-55887--5569999999986078589987898858


No 340
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=34.88  E-value=29  Score=14.37  Aligned_cols=52  Identities=17%  Similarity=0.262  Sum_probs=37.7

Q ss_pred             HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC
Q ss_conf             99998719899995788767678999999999677642898299717778--88889
Q gi|254780673|r  384 FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA  438 (467)
Q Consensus       384 ~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~  438 (467)
                      ++++-|-+++|+|||+...|--...|...+-+.+-   +.--.|+++|.+  |+.|+
T Consensus       336 i~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGA---keVh~riasPpi~~PC~YG  389 (489)
T PRK07847        336 LREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGA---AEVHVRIASPPVKWPCFYG  389 (489)
T ss_pred             CHHEECCCEEEEECCCCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC
T ss_conf             26417798799984783566779999999997699---8899996899857887674


No 341
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP).  It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=34.86  E-value=24  Score=14.91  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=15.7

Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCHHC
Q ss_conf             7998302445764444332168876322--03138665221000
Q gi|254780673|r  249 IVFRGPNGAAARVAAQHSQCYAAWYSHV--PGLKVVIPYTASDA  290 (467)
Q Consensus       249 ~v~r~p~G~~~~~g~~Hs~~~~~~~~~i--Pgl~V~~P~~~~d~  290 (467)
                      +++-||.|.+    -+  -.+.+++.++  ++.+|+.--||.+.
T Consensus        83 ilitGptGSG----Kt--Ttl~a~l~~~~~~~~~i~tiEdPvE~  120 (264)
T cd01129          83 ILVTGPTGSG----KT--TTLYSALSELNTPEKNIITVEDPVEY  120 (264)
T ss_pred             EEEECCCCCC----HH--HHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             9997899997----79--99999998643688508998676314


No 342
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=34.70  E-value=29  Score=14.35  Aligned_cols=96  Identities=18%  Similarity=0.256  Sum_probs=54.4

Q ss_pred             CEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCE----E-EEECCCCCC------CHHHHH
Q ss_conf             45860257888888887531004675279733006857999999999871989----9-995788767------678999
Q gi|254780673|r  341 VTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRL----V-TVEEGYPQS------SVGSTI  409 (467)
Q Consensus       341 itii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~----i-~vee~~~~g------g~g~~i  409 (467)
                      +||..+-+.- .|.+|-.-|++.||..+++|... .|++.+.+.+-+++++--    + +-..-++.-      ---.++
T Consensus         3 itiy~~p~C~-t~rka~~~L~~~gi~~~~~~~~~-~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~~~~~~~~~~   80 (117)
T COG1393           3 ITIYGNPNCS-TCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKLGDGVEELINTRGTTYRELNLDKEDLSDEEL   80 (117)
T ss_pred             EEEEECCCCH-HHHHHHHHHHHCCCCCEEEEEEC-CCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCCCCCCCHHHH
T ss_conf             8997279875-89999999998699967988206-999999999999984846999987145058775875323586999


Q ss_pred             HHHHHHHHHHHCCCCCEEECCCCCCCCCCHH
Q ss_conf             9999996776428982997177788888966
Q gi|254780673|r  410 ANQVQRKVFDYLDAPILTITGRDVPMPYAAN  440 (467)
Q Consensus       410 ~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~  440 (467)
                      +..+.++- ..++.|+. +....+-+-|...
T Consensus        81 ~~~i~~~~-~LikRPiv-v~~~~~~iG~~~e  109 (117)
T COG1393          81 IEALLENP-SLIKRPIV-VDNKKLRVGFNEE  109 (117)
T ss_pred             HHHHHHCH-HHHCCCEE-EECCCEEECCCHH
T ss_conf             99998583-44048769-8599468548999


No 343
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=34.11  E-value=30  Score=14.29  Aligned_cols=63  Identities=16%  Similarity=0.244  Sum_probs=47.7

Q ss_pred             EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf             44316874586025788888888753100467527973300685799999999987198999957
Q gi|254780673|r  334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEE  398 (467)
Q Consensus       334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee  398 (467)
                      ++..|.-|.|-+  ..+..+...+..|.+.||...|.|.+.=..-.+..|+.-..+-|.+-+...
T Consensus       440 ~~~~gqPVLVGT--~SVe~SE~ls~lL~~~gi~h~VLNAk~~n~~~EAeIIA~AG~~gaVTIATN  502 (946)
T PRK12902        440 MHKQGRPVLVGT--TSVEKSELLSALLAEQGIPHNLLNAKPENVEREAEIVAQAGRKGAVTIATN  502 (946)
T ss_pred             HHHCCCCEEEEE--CCHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEECC
T ss_conf             975899889972--757989999999985588620325786442789999994699996897454


No 344
>KOG2891 consensus
Probab=33.93  E-value=12  Score=17.16  Aligned_cols=55  Identities=29%  Similarity=0.457  Sum_probs=32.7

Q ss_pred             CHHHHCCCCCEECCCCCHH---HHHHHHHHHHHCCCC--------CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6475408111011666627---899899998871886--------445666667899999999987
Q gi|254780673|r  179 GLLQEFGCERVIDTPITEH---GFAGIGIGASFAGLK--------PIVEFMTFNFAMQAIDQIINS  233 (467)
Q Consensus       179 gl~~~fg~~R~~d~pi~E~---~~~G~a~G~A~~G~~--------Piv~~~~~~f~~~a~dqi~n~  233 (467)
                      .-.++||.-|+.|.||+..   -|.|--.|.-.-||-        ..|.||-+--..+|||.++|.
T Consensus       180 ~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~  245 (445)
T KOG2891         180 KAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGM  245 (445)
T ss_pred             HHHHHHCCCEECCCCCCCHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999973650213775565668884376445032034557511389999999987599999987232


No 345
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=33.80  E-value=30  Score=14.25  Aligned_cols=32  Identities=31%  Similarity=0.412  Sum_probs=20.6

Q ss_pred             CCEEEEHH-HHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             74586025-788888888753100467527973
Q gi|254780673|r  340 DVTIISFG-IGMTYATKAAIELEKNGIDAELID  371 (467)
Q Consensus       340 ditii~~G-~~~~~a~~aa~~L~~~gi~~~vid  371 (467)
                      |+-|+..| .....|++.+..|.+.||.+++-.
T Consensus         3 dv~ii~~~~~~~~~a~~i~~~LR~~gi~v~~~~   35 (91)
T cd00859           3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDY   35 (91)
T ss_pred             EEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             899998186999999999999998899399973


No 346
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=33.79  E-value=30  Score=14.25  Aligned_cols=19  Identities=32%  Similarity=0.330  Sum_probs=8.9

Q ss_pred             CCCCEECCCCEEEEEECCC
Q ss_conf             7897625898599995375
Q gi|254780673|r   25 NEGDLIKQGDIIYEVETDK   43 (467)
Q Consensus        25 k~GD~V~~gd~l~eiETDK   43 (467)
                      .+|-.++.+|-|+.|.-..
T Consensus        27 ~~g~V~sv~DgIa~v~Gl~   45 (504)
T COG0056          27 EVGTVISVGDGIARVSGLE   45 (504)
T ss_pred             CCCEEEEEECCEEEEECCC
T ss_conf             1644999725469994474


No 347
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.76  E-value=30  Score=14.25  Aligned_cols=14  Identities=7%  Similarity=0.045  Sum_probs=7.5

Q ss_pred             CHHHHHHHHHHHHC
Q ss_conf             98999999999850
Q gi|254780673|r  448 NVDEIIESVESICY  461 (467)
Q Consensus       448 ~~~~I~~av~~v~~  461 (467)
                      +.+++-+|+++.+.
T Consensus       520 ~~~el~~Al~~Al~  533 (572)
T PRK08979        520 DPAELESGLAKALA  533 (572)
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             99999999999985


No 348
>COG0094 RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
Probab=33.68  E-value=5.8  Score=19.29  Aligned_cols=135  Identities=22%  Similarity=0.322  Sum_probs=61.5

Q ss_pred             CCEECCCCCHH-----HHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             11011666627-----89989999-8871886445666667899999999987886742117767888799830244576
Q gi|254780673|r  187 ERVIDTPITEH-----GFAGIGIG-ASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR  260 (467)
Q Consensus       187 ~R~~d~pi~E~-----~~~G~a~G-~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~  260 (467)
                      +=++|+++-|+     .+...+.= ..+.|-||++...            .++.+.|..+.|-.+.+-|++|+       
T Consensus        33 KvvvNmGvGea~~d~k~l~~A~~~L~~ItGQKPv~tkA------------kksia~FkiR~g~pIG~KVTLRg-------   93 (180)
T COG0094          33 KVVVNMGVGEAAADGKRLEKAAKDLELITGQKPVITKA------------KKSIAGFKIREGMPIGVKVTLRG-------   93 (180)
T ss_pred             EEEEECCCHHHHHCHHHHHHHHHHHHHHHCCCCEEEEH------------HCCCCCCCCCCCCEEEEEEEECH-------
T ss_conf             99997553232214489999999999986898656201------------13554566227973268999764-------


Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCC--CCCCCCCCEECCCCCEEEEECC
Q ss_conf             44443321688763220313866522100010555654137834764021233333--4533466312144311444316
Q gi|254780673|r  261 VAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSS--FEVPMVDDLVIPIGRARIHRQG  338 (467)
Q Consensus       261 ~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~--~~~p~~~~~~~p~Gk~~i~~~G  338 (467)
                            +...-++-.  -+.|+.|. -.|.+|+-..++...+-+-|       |-.  ...|+.+ |    .+. +--.|
T Consensus        94 ------~rm~eFL~r--l~~i~lPr-vrdfrGls~~sFDg~GN~sf-------GI~E~i~FPei~-y----D~~-~~i~G  151 (180)
T COG0094          94 ------ERMYEFLDR--LLNIALPR-VRDFRGLSPKSFDGRGNYSF-------GIKEQIIFPEID-Y----DPI-IGIRG  151 (180)
T ss_pred             ------HHHHHHHHH--HHHHHCCC-CCCCCCCCCCCCCCCCCEEE-------CCCCEEECCCCC-C----CCC-CCCCC
T ss_conf             ------889999999--99763544-22346778566379785576-------650124067645-6----766-77267


Q ss_pred             CCCEEEEHHHHHHHHHHHHHHHHCCCC
Q ss_conf             874586025788888888753100467
Q gi|254780673|r  339 SDVTIISFGIGMTYATKAAIELEKNGI  365 (467)
Q Consensus       339 ~ditii~~G~~~~~a~~aa~~L~~~gi  365 (467)
                      =|+||++.-..-.   ++...|...++
T Consensus       152 Mdi~ivtta~~d~---e~R~ll~~~~~  175 (180)
T COG0094         152 MDITIVTTAKGDV---EARALLSAFGI  175 (180)
T ss_pred             CEEEEEECCCCHH---HHHHHHHHCCC
T ss_conf             4289995279719---99999985599


No 349
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.65  E-value=30  Score=14.24  Aligned_cols=16  Identities=13%  Similarity=-0.099  Sum_probs=8.5

Q ss_pred             EEEEECCCCCEECCCC
Q ss_conf             9877417897625898
Q gi|254780673|r   19 IAKWKKNEGDLIKQGD   34 (467)
Q Consensus        19 i~~W~vk~GD~V~~gd   34 (467)
                      +++++++-|-.|..-|
T Consensus        27 ~a~~L~~~G~~v~~~D   42 (487)
T PRK03369         27 VLAALTRFGARPTVCD   42 (487)
T ss_pred             HHHHHHHCCCEEEEEE
T ss_conf             9999997869799998


No 350
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=33.61  E-value=31  Score=14.23  Aligned_cols=77  Identities=23%  Similarity=0.287  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EE-EEECCCCCCC------H-HHHHHHHHHHHHH
Q ss_conf             888888753100467527973300685799999999987198----99-9957887676------7-8999999999677
Q gi|254780673|r  351 TYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LV-TVEEGYPQSS------V-GSTIANQVQRKVF  418 (467)
Q Consensus       351 ~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i-~vee~~~~gg------~-g~~i~~~i~e~~f  418 (467)
                      ..|.+|-+.|.+.||+.+++|.+. .|++.+.|.+.+++++.    ++ +=+..|+.-|      + -.++...+.++- 
T Consensus        10 s~~rka~~~L~~~~i~~~~~d~~k-~~~s~~eL~~~l~~~~~~~~~li~~~~~~~k~l~~~~~~~ls~~e~~~ll~~~P-   87 (105)
T cd02977          10 STSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHP-   87 (105)
T ss_pred             HHHHHHHHHHHHCCCCCEEEHHHH-CCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHCH-
T ss_conf             789999999985799738860432-269999999999975998999986332459884983401399999999999696-


Q ss_pred             HHCCCCCEEEC
Q ss_conf             64289829971
Q gi|254780673|r  419 DYLDAPILTIT  429 (467)
Q Consensus       419 ~~L~~p~~ri~  429 (467)
                      ..|..|+...+
T Consensus        88 ~LlkRPIi~~~   98 (105)
T cd02977          88 KLIKRPIVVDG   98 (105)
T ss_pred             HHHCCCEEEEC
T ss_conf             78339769869


No 351
>PRK06234 methionine gamma-lyase; Provisional
Probab=33.46  E-value=31  Score=14.21  Aligned_cols=46  Identities=17%  Similarity=0.424  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCC
Q ss_conf             1223554431136506999324344588665323647540811-101166
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTP  193 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~p  193 (467)
                      |+..++...++....+ +...++  |||.+..-..++.+||-+ +++|.-
T Consensus        91 Ai~~~l~~~l~~Gdhi-v~~~~~--YGgT~~l~~~~l~~~Gi~~~~vd~~  137 (399)
T PRK06234         91 AISSSLWSALKAGDHV-VASDTL--YGCTFALLNHGLTRYGVEVTFVDTS  137 (399)
T ss_pred             HHHHHHHHHCCCCCEE-EECCCC--CHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999999971899989-975887--2048999998865168578862688


No 352
>TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117   The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases..
Probab=33.02  E-value=12  Score=17.03  Aligned_cols=40  Identities=8%  Similarity=0.189  Sum_probs=30.1

Q ss_pred             HHHHHH-HHHCCCEEEEECCCCCCC-HHHHHHHHHHHHHHHH
Q ss_conf             999999-987198999957887676-7899999999967764
Q gi|254780673|r  381 QTIFES-VKKTGRLVTVEEGYPQSS-VGSTIANQVQRKVFDY  420 (467)
Q Consensus       381 ~~i~~s-v~kt~~~i~vee~~~~gg-~g~~i~~~i~e~~f~~  420 (467)
                      .-+..+ -+|+.|+++|||+|.... .|..+++...|.+|..
T Consensus       724 ~~my~~g~R~~rK~~~iDEAW~Ll~~g~~~~~~~FIE~gyRr  765 (900)
T TIGR02746       724 GEMYLTGDRKRRKILIIDEAWSLLDDGANPQAANFIETGYRR  765 (900)
T ss_pred             HHHHHCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf             776305889755167644248987427851358988876320


No 353
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=32.71  E-value=32  Score=14.13  Aligned_cols=52  Identities=10%  Similarity=0.234  Sum_probs=37.7

Q ss_pred             HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC
Q ss_conf             99998719899995788767678999999999677642898299717778--88889
Q gi|254780673|r  384 FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA  438 (467)
Q Consensus       384 ~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~  438 (467)
                      ++++-+-+|+|+||++...|--...|...+-+-+-   +.-..|+++|.+  |+.|+
T Consensus       350 ~~~~v~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGa---keVh~ri~sPpi~~pc~yG  403 (472)
T PRK05793        350 LKVNVEGKRVVLIDDSIVRGTTSKRLVESLRRAGA---KEVHFRVSSPPVKYPCYFG  403 (472)
T ss_pred             EEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC
T ss_conf             02100698699980770557679999999997799---9899996899968876665


No 354
>PRK10126 tyrosine phosphatase; Provisional
Probab=32.25  E-value=19  Score=15.68  Aligned_cols=92  Identities=11%  Similarity=0.096  Sum_probs=50.9

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC----
Q ss_conf             8887531004675279733006857999999999871989999578876767899999999967764289829971----
Q gi|254780673|r  354 TKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTIT----  429 (467)
Q Consensus       354 ~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~----  429 (467)
                      -.|...|.+.||+.+--   .-.+++.+.    +...-.+++.++..         ...|.+. +......+..++    
T Consensus        47 ~~a~~~~~~~gid~~~h---~arqi~~~~----~~~~DlIl~Md~~~---------~~~l~~~-~P~~~~kv~ll~~~~~  109 (147)
T PRK10126         47 PTAISVAAEHQLSLEGH---CARQISRRL----CRNYDLILTMEKRH---------IERLCEM-APEMRGKVMLFGHWDN  109 (147)
T ss_pred             HHHHHHHHHCCCCCCCC---EEEECCHHH----HHHCCEEEECCHHH---------HHHHHHH-CCCHHHEEEEHHHCCC
T ss_conf             99999999829996678---441088878----63689999889899---------9999986-8312411764421078


Q ss_pred             CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf             7778888896676560899899999999985020
Q gi|254780673|r  430 GRDVPMPYAANLEKLALPNVDEIIESVESICYKR  463 (467)
Q Consensus       430 ~~d~p~P~~~~le~~~~p~~~~I~~av~~v~~~~  463 (467)
                      ..|+|-||....+. |--..+.|-.+++....|=
T Consensus       110 ~~dVpDPy~~~~~~-Fe~~~~~Ie~~~~~~~~~L  142 (147)
T PRK10126        110 ECEIPDPYRKSRET-FAAVYTLLERSARQWAQAL  142 (147)
T ss_pred             CCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf             98599999899899-9999999999999999999


No 355
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=32.17  E-value=32  Score=14.07  Aligned_cols=50  Identities=14%  Similarity=0.181  Sum_probs=36.6

Q ss_pred             HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC
Q ss_conf             998719899995788767678999999999677642898299717778--88889
Q gi|254780673|r  386 SVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA  438 (467)
Q Consensus       386 sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~  438 (467)
                      ++-+-+++|+|||+...|--...|...+-+.+-   +.--.|+++|.+  |+.|+
T Consensus       352 ~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGA---keVh~ri~sPpi~~pC~yG  403 (474)
T PRK06388        352 EVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGA---KEVHVRIGSPHIIAPCYFG  403 (474)
T ss_pred             EEECCCEEEEECCCCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC
T ss_conf             441798899981661656679999999997799---8899997899967886662


No 356
>CHL00037 petA cytochrome f
Probab=31.92  E-value=26  Score=14.76  Aligned_cols=18  Identities=17%  Similarity=0.056  Sum_probs=9.9

Q ss_pred             CCCCCCHHHHHHHHHHHH
Q ss_conf             887676789999999996
Q gi|254780673|r  399 GYPQSSVGSTIANQVQRK  416 (467)
Q Consensus       399 ~~~~gg~g~~i~~~i~e~  416 (467)
                      +.-.||||-.=.+.+-++
T Consensus       265 nPNVGGFGQ~e~EIVLQ~  282 (320)
T CHL00037        265 NPNVGGFGQGDAEIVLQD  282 (320)
T ss_pred             CCCCCCCCCCCEEEEECC
T ss_conf             998676676614899418


No 357
>PRK08114 cystathionine beta-lyase; Provisional
Probab=31.91  E-value=32  Score=14.04  Aligned_cols=46  Identities=17%  Similarity=0.306  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCC
Q ss_conf             1223554431136506999324344588665323647540811-101166
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTP  193 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~p  193 (467)
                      |+.-++...++....++ ...++  |||.+..-+.++.+||=+ +++|.-
T Consensus        89 Ais~~ll~ll~~Gd~il-~~~~~--YggT~~l~~~~l~~~Gi~v~~~d~~  135 (395)
T PRK08114         89 AVANSILAFVEQGDHVL-MTGTA--YEPSQDFCSKILSKLGVTTTWFDPL  135 (395)
T ss_pred             HHHHHHHHHHCCCCEEE-ECCCC--CHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             99999999708999899-76888--5689999999998759569985799


No 358
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=31.47  E-value=33  Score=14.00  Aligned_cols=61  Identities=15%  Similarity=0.274  Sum_probs=45.8

Q ss_pred             EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf             44316874586025788888888753100467527973300685799999999987198999957
Q gi|254780673|r  334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEE  398 (467)
Q Consensus       334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee  398 (467)
                      +...|.-|.|-+  ..+..+...++.|.++||.+.|.|.+.  .-.+..|+.-..+-|++-+...
T Consensus       434 ~h~~GqPVLVGT--~SVe~SE~ls~~L~~~gi~h~VLNAk~--~~~EA~IIA~AG~~GaVTIATN  494 (775)
T PRK12326        434 VHETGQPVLVGT--RDVAESEELAERLVRRGVPAVVLNAKN--DAEEAAVIAEAGKYGAVTVSTQ  494 (775)
T ss_pred             HHHCCCCEEEEE--CCHHHHHHHHHHHHHCCCCCEECCCCC--HHHHHHHHHHCCCCCCEEEECC
T ss_conf             997599889970--718989999999987699830236897--2769999994599998798233


No 359
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=31.33  E-value=33  Score=13.98  Aligned_cols=30  Identities=17%  Similarity=0.273  Sum_probs=11.1

Q ss_pred             EEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCC
Q ss_conf             6999324344588665323647540811101166
Q gi|254780673|r  160 VFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTP  193 (467)
Q Consensus       160 ~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~p  193 (467)
                      +++.|..+.   ++..--..|.+++|- .|+.|+
T Consensus       205 vi~~G~G~~---~a~~~l~~lAe~lg~-PV~tt~  234 (574)
T PRK09124        205 TLLCGSGCA---GAHDELVALADTLKA-PIVHAL  234 (574)
T ss_pred             EEEECCCHH---HHHHHHHHHHHHHCC-CEEEEC
T ss_conf             899791032---379999999998599-889605


No 360
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=31.08  E-value=33  Score=13.95  Aligned_cols=63  Identities=11%  Similarity=0.189  Sum_probs=46.1

Q ss_pred             EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf             44316874586025788888888753100467527973300685799999999987198999957
Q gi|254780673|r  334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEE  398 (467)
Q Consensus       334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee  398 (467)
                      ++..|.-|.|-+  ..+..+...+..|.+.||.++|.|.+.=..-.+..|+.-..+.|.+-+...
T Consensus       420 ~h~~GqPVLvGT--~SVe~SE~ls~~L~~~gi~h~vLNAk~~n~~~EA~IiA~AG~~gaVTIATN  482 (891)
T CHL00122        420 MHKIGRPILVGT--TSVEKSELLSQLLEEYQLPHNLLNAKPENVKRESEIIAQAGRKGAITIATN  482 (891)
T ss_pred             HHHCCCCEEEEC--CCHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCEEEECC
T ss_conf             996799989834--655889999999997478622023884307899999995699993897155


No 361
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=31.02  E-value=34  Score=13.94  Aligned_cols=101  Identities=22%  Similarity=0.286  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCC----CEEEE-EC-------CCCCCCHHHHHHHHHHHHHH
Q ss_conf             88888875310046752797330068579999999998719----89999-57-------88767678999999999677
Q gi|254780673|r  351 TYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTG----RLVTV-EE-------GYPQSSVGSTIANQVQRKVF  418 (467)
Q Consensus       351 ~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~----~~i~v-ee-------~~~~gg~g~~i~~~i~e~~f  418 (467)
                      ..|.+|..-|.++||+.+.+|++ -.|+..+.|...++++.    .++.- ..       ....-+. ++..+.+.++. 
T Consensus        11 ~TcrKA~kWL~~~~I~y~~~di~-k~p~s~~el~~~L~~~~~g~~~lintrs~~~r~L~~~~~~ls~-~E~i~ll~~~p-   87 (132)
T PRK13344         11 TSCKKAKTWLNAHQLAYKEQNLG-KEPLTKEEILAILSKTENGVESIVSSKNRYAKALDCDIEELSV-SEVIDLIQENP-   87 (132)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEE-CCCCCHHHHHHHHHHCCCCHHHHEECCCCHHHHCCCCHHHCCH-HHHHHHHHHCC-
T ss_conf             67899999999879963885412-2796999999999981558999137888216642756443999-99999999590-


Q ss_pred             HHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHH
Q ss_conf             6428982997177788888966765608998999999
Q gi|254780673|r  419 DYLDAPILTITGRDVPMPYAANLEKLALPNVDEIIES  455 (467)
Q Consensus       419 ~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~a  455 (467)
                      ..|+.|+.. ...-.-+.|...--+.++|...+-.+-
T Consensus        88 ~LiKRPil~-~~~~~~vGF~ede~r~Flpr~~r~~e~  123 (132)
T PRK13344         88 RILKSPILI-DDKRLQVGYKEDDIRAFLPRSIRNVEN  123 (132)
T ss_pred             CCEECCEEE-ECCEEEECCCHHHHHHHCCHHHHHHHH
T ss_conf             103274795-199889625999999876988899999


No 362
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=30.93  E-value=34  Score=13.94  Aligned_cols=52  Identities=13%  Similarity=0.293  Sum_probs=38.2

Q ss_pred             HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC
Q ss_conf             99998719899995788767678999999999677642898299717778--88889
Q gi|254780673|r  384 FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA  438 (467)
Q Consensus       384 ~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~  438 (467)
                      ++++-+-+++|+|||+...|--...|...|-+-+-   +.--.|+++|.+  |+.|+
T Consensus       334 ~~~~i~gK~vvlvDDSIVRGtT~k~ii~~Lr~aGa---keVh~~i~sPpi~~pC~yG  387 (445)
T PRK08525        334 MRKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGA---SEIHMAIACPEIKFPCTYG  387 (445)
T ss_pred             HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC
T ss_conf             34521798699981761557789999999997799---8899996899968886676


No 363
>PRK05968 hypothetical protein; Provisional
Probab=30.84  E-value=34  Score=13.93  Aligned_cols=46  Identities=20%  Similarity=0.348  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC-CCEECCC
Q ss_conf             122355443113650699932434458866532364754081-1101166
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGC-ERVIDTP  193 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~-~R~~d~p  193 (467)
                      |+..++...++....++ ...++  |||.+..-+.++.+||= -+++|.-
T Consensus        90 Ais~~l~~ll~~Gd~iv-~~~~~--YggT~~l~~~~l~~~GI~v~~vd~~  136 (389)
T PRK05968         90 AISSTVLSFVEPGDRIV-AVRHV--YPDAYRLFGTLLKRMGVEVDYVDGR  136 (389)
T ss_pred             HHHHHHHHHHCCCCEEE-ECCCC--CCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf             99999999608999898-58876--6758999998886078469996899


No 364
>pfam03960 ArsC ArsC family. This family is related to glutaredoxins pfam00462.
Probab=30.52  E-value=34  Score=13.89  Aligned_cols=91  Identities=21%  Similarity=0.264  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EE-EEECCCC-------CCCHHHHHHHHHHHHHHH
Q ss_conf             88888753100467527973300685799999999987198----99-9957887-------676789999999996776
Q gi|254780673|r  352 YATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LV-TVEEGYP-------QSSVGSTIANQVQRKVFD  419 (467)
Q Consensus       352 ~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i-~vee~~~-------~gg~g~~i~~~i~e~~f~  419 (467)
                      .|.+|.+.|.+.||..+++|.+. .|++.+.|...+++++.    ++ +=+..|+       .-+ -+++.+.+.++- .
T Consensus         8 t~rka~~~L~~~~i~~~~~d~~~-~p~s~~el~~~l~~~~~~~~~li~~~~~~~k~l~~~~~~ls-~~e~~~ll~~~P-~   84 (111)
T pfam03960         8 TCRKALAWLEEHGIEYQEIDYLE-TPPSKEELKDILSKTGDGWEELLNTRGTTYRELNLDVEELS-EDELIELMLENP-S   84 (111)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCCCCCCCC-HHHHHHHHHHCC-H
T ss_conf             99999999998799808973246-79999999999998399899998852777888399733279-999999998483-1


Q ss_pred             HCCCCCEEECCCCCCCCCCHHHHHHCC
Q ss_conf             428982997177788888966765608
Q gi|254780673|r  420 YLDAPILTITGRDVPMPYAANLEKLAL  446 (467)
Q Consensus       420 ~L~~p~~ri~~~d~p~P~~~~le~~~~  446 (467)
                      .|+.|+...+ ...-+-+.+.--+.++
T Consensus        85 LikRPIi~~~-~~~~iG~~~e~i~~~l  110 (111)
T pfam03960        85 LIRRPIVVDG-KRLLVGFNEEEIRAFL  110 (111)
T ss_pred             HEECCEEEEC-CEEEECCCHHHHHHHC
T ss_conf             3222579739-9889769999999758


No 365
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=30.51  E-value=34  Score=13.89  Aligned_cols=52  Identities=13%  Similarity=0.233  Sum_probs=36.4

Q ss_pred             HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC
Q ss_conf             99998719899995788767678999999999677642898299717778--88889
Q gi|254780673|r  384 FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA  438 (467)
Q Consensus       384 ~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~  438 (467)
                      ++++-|-+++|+|||+...|--...|...+-+-+-   +.--.|+++|.+  |+.|+
T Consensus       342 ~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGA---keVh~ri~sPpi~~Pc~yG  395 (471)
T PRK06781        342 VRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGA---TEVHVRIASPPLKYPCFYG  395 (471)
T ss_pred             CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC
T ss_conf             10004898899981660557569999999997799---8899996899857876665


No 366
>TIGR02870 spore_II_D stage II sporulation protein D; InterPro: IPR014225   This entry contains the stage II sporulation protein D (SpoIID), which is a protein involved in the endospore formation program. SpoIID is one of the three genes (spoIID, spoIIM and spoIIP, , , ), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan - mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the engulfment stage. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers .
Probab=30.46  E-value=31  Score=14.14  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=28.3

Q ss_pred             EEECCCCCE--EEEHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             443168745--86025788888888753100467527
Q gi|254780673|r  334 IHRQGSDVT--IISFGIGMTYATKAAIELEKNGIDAE  368 (467)
Q Consensus       334 i~~~G~dit--ii~~G~~~~~a~~aa~~L~~~gi~~~  368 (467)
                      +.+.+++|.  -++|||.|..+.-=|.-|+++|=..+
T Consensus       307 ~~~~~d~I~i~t~GyGHGVGMSQYGAn~MA~~Gk~Y~  343 (358)
T TIGR02870       307 WKVQGDKIVITTIGYGHGVGMSQYGANAMAKEGKTYD  343 (358)
T ss_pred             EEEECCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             9986787999987154555523788999986179742


No 367
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.29  E-value=34  Score=13.86  Aligned_cols=32  Identities=16%  Similarity=0.320  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
Q ss_conf             01223554431136506999324344588665
Q gi|254780673|r  144 EALRDAIAEEMRRDKDVFIMGEEVAEYQGAYK  175 (467)
Q Consensus       144 ea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~  175 (467)
                      +-++++-.-.-.--..+++.||||+.||+.++
T Consensus       177 ~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~  208 (437)
T COG0621         177 DILKEVKRLVAQGVKEIVLTGQDVNAYGKDLG  208 (437)
T ss_pred             HHHHHHHHHHHCCCEEEEEEEEEHHHCCCCCC
T ss_conf             99999999998897499999881101044677


No 368
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=30.14  E-value=35  Score=13.85  Aligned_cols=102  Identities=22%  Similarity=0.234  Sum_probs=52.7

Q ss_pred             CCEEEEHHHHHH-----HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             745860257888-----888887531004675279733006857999999999871989999578876767899999999
Q gi|254780673|r  340 DVTIISFGIGMT-----YATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQ  414 (467)
Q Consensus       340 ditii~~G~~~~-----~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~  414 (467)
                      ++.+-|.|....     .--.+.+.|++.||+.+=   +.-++|+.+.    +...-.++++++..         ...|.
T Consensus        29 ~i~v~SAG~~~~~~G~~~~~~a~~~l~~~Gid~~~---h~sr~i~~~~----~~~~DlIl~M~~~~---------~~~l~   92 (141)
T cd00115          29 DIEVDSAGTSGWHVGGRPDPRAIAVLAEHGIDISG---HRARQLTEDD----FDEFDLIITMDESN---------LAELL   92 (141)
T ss_pred             CEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC---CCEEECCCCC----CCCCCEEEECCHHH---------HHHHH
T ss_conf             86999610256677999898899999994998434---5101243025----66589999898689---------99998


Q ss_pred             HHHHHHCCCCCEEEC----CCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             967764289829971----777888889667656089989999999998
Q gi|254780673|r  415 RKVFDYLDAPILTIT----GRDVPMPYAANLEKLALPNVDEIIESVESI  459 (467)
Q Consensus       415 e~~f~~L~~p~~ri~----~~d~p~P~~~~le~~~~p~~~~I~~av~~v  459 (467)
                       ..|......+..++    ..|+|-||...++. |--..+.|-++++.+
T Consensus        93 -~~~p~~~~kv~~l~~~~~~~~I~DPy~~~~~~-f~~~~~~I~~~v~~l  139 (141)
T cd00115          93 -EPPPGGRAKVELLGEYAGDREVPDPYYGSLEA-FEEVYDLIEEAIKAL  139 (141)
T ss_pred             -HCCCCCCCEEEECHHHCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHH
T ss_conf             -60877533598613335787278988998799-999999999999997


No 369
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=30.06  E-value=35  Score=13.84  Aligned_cols=56  Identities=21%  Similarity=0.287  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCE-----EEEECCCCCCCHHHHHHH
Q ss_conf             88888887531004675279733006857999999999871989-----999578876767899999
Q gi|254780673|r  350 MTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRL-----VTVEEGYPQSSVGSTIAN  411 (467)
Q Consensus       350 ~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~-----i~vee~~~~gg~g~~i~~  411 (467)
                      =..|.+|.+.|.+.||..+.+|+..    |.+...+..++++..     |+++ +...||+-. +.+
T Consensus        10 C~~C~~aK~lL~~~~i~y~ei~v~~----~~~~~~~~~~~~~~~~TvPqIfi~-g~~IGG~~~-l~~   70 (75)
T cd03418          10 CPYCVRAKALLDKKGVDYEEIDVDG----DPALREEMINRSGGRRTVPQIFIG-DVHIGGCDD-LYA   70 (75)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCC----CHHHHHHHHHHCCCCCEECEEEEC-CEEEECHHH-HHH
T ss_conf             9779999999998199868986279----999999999980899353979999-979837899-999


No 370
>TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase; InterPro: IPR011812    This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain, which describes transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are proteobacteria that produce murein (peptidoglycan).; GO: 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=30.01  E-value=35  Score=13.83  Aligned_cols=11  Identities=27%  Similarity=0.368  Sum_probs=6.4

Q ss_pred             HCCCEEEEEEC
Q ss_conf             20313866522
Q gi|254780673|r  276 VPGLKVVIPYT  286 (467)
Q Consensus       276 iPgl~V~~P~~  286 (467)
                      -|||+...=+.
T Consensus        64 S~nlk~AvIAs   74 (228)
T TIGR02070        64 SPNLKRAVIAS   74 (228)
T ss_pred             CHHHCEEEEEC
T ss_conf             81120104111


No 371
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=29.90  E-value=35  Score=13.82  Aligned_cols=52  Identities=17%  Similarity=0.216  Sum_probs=37.2

Q ss_pred             HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC
Q ss_conf             99998719899995788767678999999999677642898299717778--88889
Q gi|254780673|r  384 FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA  438 (467)
Q Consensus       384 ~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~  438 (467)
                      ++++-|-+++|+||++...|--...|...+-+.+-   +.-..|+++|.+  |+.|+
T Consensus       345 ~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGA---keVh~ri~sPpi~~pc~yG  398 (480)
T PRK09123        345 NRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGA---KEVHLRIASPPTTHPCFYG  398 (480)
T ss_pred             CCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC
T ss_conf             33345898299980661536769999999997799---8899996899857876674


No 372
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=29.74  E-value=35  Score=13.80  Aligned_cols=49  Identities=14%  Similarity=0.161  Sum_probs=33.8

Q ss_pred             CCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHHH
Q ss_conf             168745860257888888887531004675279733006857--999999999
Q gi|254780673|r  337 QGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPM--DWQTIFESV  387 (467)
Q Consensus       337 ~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pl--d~~~i~~sv  387 (467)
                      .|+.+.+|+=|+.-..|...|..|-.  -++.++..|+...+  ..+.+..+.
T Consensus       450 ~GK~VVVIGGGntAmDcaRTA~RlGA--~~VtivYRR~~~eMPA~~~Ev~~A~  500 (639)
T PRK12809        450 EGKRVVVLGGGDTTMDCLRTSIRLNA--ASVTCAYRRDEVSMPGSRKEVVNAR  500 (639)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCC--CEEEECCCCCCCCCCCCCEECCCHH
T ss_conf             67779998998218999999998399--8775215477457999700301012


No 373
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=29.58  E-value=35  Score=13.78  Aligned_cols=40  Identities=15%  Similarity=0.302  Sum_probs=19.3

Q ss_pred             EEECCCC-CCCCCCHHHHHHCCCCHHHHH-HHHHHHHCCCCC
Q ss_conf             9971777-888889667656089989999-999998502002
Q gi|254780673|r  426 LTITGRD-VPMPYAANLEKLALPNVDEII-ESVESICYKRKA  465 (467)
Q Consensus       426 ~ri~~~d-~p~P~~~~le~~~~p~~~~I~-~av~~v~~~~~~  465 (467)
                      .++-.-| +|.|.....+|....+...++ ++++++.+..-.
T Consensus       285 ~~vvvTdTip~~~~~~~~ki~vlsvA~llAeaI~ri~~~~Sv  326 (331)
T PRK02812        285 EEVIVTNTIPVPEERRFPQLKVLSVANMLGEAIWRIHEESSV  326 (331)
T ss_pred             CEEEEECCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHCCCCH
T ss_conf             779980894485000699819987389999999998779976


No 374
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=29.55  E-value=35  Score=13.78  Aligned_cols=130  Identities=18%  Similarity=0.171  Sum_probs=57.5

Q ss_pred             CCCCCCCEEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCC
Q ss_conf             7767888799830244576444433-216887632203138665221000105556541378347640212333334533
Q gi|254780673|r  242 GGQITTSIVFRGPNGAAARVAAQHS-QCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFEVP  320 (467)
Q Consensus       242 gg~~~~p~v~r~p~G~~~~~g~~Hs-~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~~p  320 (467)
                      +|....|+.+-|    +.|.|-||- |.+. ....-|+++|++-+. .+.-.=+..+++.++.--|   |-.|. +.++-
T Consensus       137 ~g~~yNPLfIyG----~~GlGKTHLL~AIg-n~i~~~~~kV~Yvta-e~F~~~~v~ai~~~~~~~F---r~~yr-~~DvL  206 (455)
T PRK12422        137 KGFPFNPIYLFG----PEGSGKTHLMQAAV-SALRESGGKILYVSS-ELFTEHLVSAIRSGEMQRF---RSFYR-NVDAL  206 (455)
T ss_pred             CCCCCCCEEEEC----CCCCCHHHHHHHHH-HHHHCCCCEEEEECH-HHHHHHHHHHHHCCCHHHH---HHHHH-CCCEE
T ss_conf             887678758878----99997899999999-985379986999749-9999999999975889999---99996-38877


Q ss_pred             CCCCEECCCCCEE-----------EEECCCCCEEEEHHHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf             4663121443114-----------44316874586025788888888753100---467527973300685799999999
Q gi|254780673|r  321 MVDDLVIPIGRAR-----------IHRQGSDVTIISFGIGMTYATKAAIELEK---NGIDAELIDLRTIRPMDWQTIFES  386 (467)
Q Consensus       321 ~~~~~~~p~Gk~~-----------i~~~G~ditii~~G~~~~~a~~aa~~L~~---~gi~~~vid~r~l~Pld~~~i~~s  386 (467)
                      -.||.-+=-||..           ....|+.|-|-+-- .-.+....-+.|..   -|+.++      |.|-|.++..+.
T Consensus       207 LIDDIQfl~gK~~tqeEff~tfN~L~~~~KQIVitsDr-~P~el~~l~~RL~SRf~~GL~v~------I~~Pd~etr~~I  279 (455)
T PRK12422        207 FIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSSY-APGDLKAMEERLISRFEWGIAIP------IHPLTREGLRSF  279 (455)
T ss_pred             EEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCC-CHHHHHHHHHHHHHHHHCCEEEC------CCCCCHHHHHHH
T ss_conf             63147887284889999999999999859969996898-95765126899998863761321------689998999999


Q ss_pred             HH
Q ss_conf             98
Q gi|254780673|r  387 VK  388 (467)
Q Consensus       387 v~  388 (467)
                      ++
T Consensus       280 l~  281 (455)
T PRK12422        280 LM  281 (455)
T ss_pred             HH
T ss_conf             99


No 375
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=29.46  E-value=36  Score=13.77  Aligned_cols=57  Identities=21%  Similarity=0.378  Sum_probs=29.7

Q ss_pred             CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH-----CCCCEEEECCCCCCCCCCCC
Q ss_conf             7888799830244576444433216887632203138665221000105556541-----37834764021233333453
Q gi|254780673|r  245 ITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR-----DPNPVIFLENEILYGSSFEV  319 (467)
Q Consensus       245 ~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~-----~~~Pvi~le~~~ly~~~~~~  319 (467)
                      +.-||+++...|++++                 ||+++.  ++.|++..+..+-+     ..++-+|+|.-+.-.+..++
T Consensus       151 iGyPv~iKA~~GGGGr-----------------Gmrvv~--~~~el~~~~~~~~~Ea~~aFg~~~v~iEk~i~~~RHIEV  211 (449)
T PRK08591        151 IGYPVIIKATAGGGGR-----------------GMRVVR--TEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEI  211 (449)
T ss_pred             CCCCEEEEECCCCCCC-----------------EEEEEC--CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEE
T ss_conf             4996698852689877-----------------699985--678999999999999997379985678771256536789


Q ss_pred             C
Q ss_conf             3
Q gi|254780673|r  320 P  320 (467)
Q Consensus       320 p  320 (467)
                      .
T Consensus       212 Q  212 (449)
T PRK08591        212 Q  212 (449)
T ss_pred             E
T ss_conf             9


No 376
>PRK12346 transaldolase A; Provisional
Probab=29.44  E-value=31  Score=14.23  Aligned_cols=22  Identities=41%  Similarity=0.474  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             8888888875310046752797
Q gi|254780673|r  349 GMTYATKAAIELEKNGIDAELI  370 (467)
Q Consensus       349 ~~~~a~~aa~~L~~~gi~~~vi  370 (467)
                      .+.+.++|++.|+++||.|.+-
T Consensus       134 ~TweGi~Aa~~Le~eGI~cnlT  155 (316)
T PRK12346        134 STWEGIRAAEELEKEGINCNLT  155 (316)
T ss_pred             CCHHHHHHHHHHHHCCCCEEEE
T ss_conf             8678999999999759714356


No 377
>pfam00354 Pentaxin Pentaxin family. Pentaxins are also known as pentraxins.
Probab=29.28  E-value=36  Score=13.75  Aligned_cols=47  Identities=21%  Similarity=0.355  Sum_probs=37.1

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHH
Q ss_conf             50699932434458866532364754081110116666278998999
Q gi|254780673|r  158 KDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGI  204 (467)
Q Consensus       158 ~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~  204 (467)
                      ...+++|||=..+||.|..++.|.-+.-.-++.|--++..-|-.++.
T Consensus       121 ~G~liLGQeQd~~gG~Fd~~qsf~G~is~v~~Wd~vL~~~eI~~~~~  167 (193)
T pfam00354       121 PPSIILGQEQDSYGGGFDASQSFVGEIGDLNMWDYVLTPEQIKTVYK  167 (193)
T ss_pred             CCEEEEEECCCCCCCCCCCCCCEEEEECCEEEECCCCCHHHHHHHHC
T ss_conf             98899977124567875756744598434478854599999999982


No 378
>pfam04430 DUF498 Protein of unknown function (DUF498/DUF598). This is a large family of uncharacterized proteins found in all domains of life. The structure shows a novel fold with three beta sheets. A dimeric form is found in the crystal structure. It was suggested that the cleft in between the two monomers might bing nucleic acid.
Probab=29.13  E-value=28  Score=14.54  Aligned_cols=37  Identities=27%  Similarity=0.276  Sum_probs=26.2

Q ss_pred             CCCCCEEEEHHH-HHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             168745860257-8888888875310046752797330
Q gi|254780673|r  337 QGSDVTIISFGI-GMTYATKAAIELEKNGIDAELIDLR  373 (467)
Q Consensus       337 ~G~ditii~~G~-~~~~a~~aa~~L~~~gi~~~vid~r  373 (467)
                      ..-|+.|+++|. ......+..+.|.+.||.+|+-|-+
T Consensus        52 ~~peiliiGtG~~~~~l~~~~~~~l~~~gI~vE~m~T~   89 (110)
T pfam04430        52 PKPEVLIIGTGARLRFLPPELREALRKLGIGVEVMDTG   89 (110)
T ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECHH
T ss_conf             99878999559866789999999999759907997759


No 379
>PRK05269 transaldolase B; Provisional
Probab=28.95  E-value=32  Score=14.11  Aligned_cols=22  Identities=36%  Similarity=0.445  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             8888888875310046752797
Q gi|254780673|r  349 GMTYATKAAIELEKNGIDAELI  370 (467)
Q Consensus       349 ~~~~a~~aa~~L~~~gi~~~vi  370 (467)
                      ++.+.++|++.|+++||.|-+-
T Consensus       135 ~TweGi~Aa~~Le~~gI~~nlT  156 (320)
T PRK05269        135 STWEGIRAAEQLEKEGINCNLT  156 (320)
T ss_pred             CCHHHHHHHHHHHHCCCCEEEE
T ss_conf             8788999999999759624577


No 380
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.94  E-value=36  Score=13.71  Aligned_cols=15  Identities=7%  Similarity=0.080  Sum_probs=8.6

Q ss_pred             CHHHHHHHHHHHHCC
Q ss_conf             989999999998502
Q gi|254780673|r  448 NVDEIIESVESICYK  462 (467)
Q Consensus       448 ~~~~I~~av~~v~~~  462 (467)
                      +.+++-+++++.+..
T Consensus       514 ~~~el~~Al~~a~~~  528 (560)
T PRK08527        514 TKEEFDKALKQALKS  528 (560)
T ss_pred             CHHHHHHHHHHHHHC
T ss_conf             999999999999818


No 381
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.87  E-value=34  Score=13.87  Aligned_cols=10  Identities=30%  Similarity=0.667  Sum_probs=3.9

Q ss_pred             ECCCCCEEEE
Q ss_conf             3168745860
Q gi|254780673|r  336 RQGSDVTIIS  345 (467)
Q Consensus       336 ~~G~ditii~  345 (467)
                      +.|+.+.++.
T Consensus       152 ~~gD~l~l~~  161 (210)
T COG2258         152 RAGDPLKLIP  161 (210)
T ss_pred             CCCCCEEEEC
T ss_conf             5999558715


No 382
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=28.81  E-value=36  Score=13.69  Aligned_cols=103  Identities=17%  Similarity=0.360  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHCCCEEE-EEECCHHCCCHHHHHHHCCCC-EEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECC--CCC
Q ss_conf             32168876322031386-652210001055565413783-47640212333334533466312144311444316--874
Q gi|254780673|r  266 SQCYAAWYSHVPGLKVV-IPYTASDAKGLLKAAIRDPNP-VIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQG--SDV  341 (467)
Q Consensus       266 s~~~~~~~~~iPgl~V~-~P~~~~d~~~ll~~ai~~~~P-vi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G--~di  341 (467)
                      .+.+..++.++||..++ ..+|..++..++.    ...| ++++.        ...|+.+-..+ +  .++.+.+  .++
T Consensus        17 ~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~----~~~pDLvLLD--------i~LPd~~Glel-l--~~lr~~~~~~~V   81 (225)
T PRK10046         17 AEMHAEYIRHIPGFSQILLAGNLAQARMMIE----RFKPGLILLD--------NYLPDGRGINL-L--HELVQAHYPGDV   81 (225)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCHHHHHHHHH----HCCCCEEEEE--------CCCCCCCHHHH-H--HHHHHHCCCCCE
T ss_conf             9999999972899549999899999999997----3599999982--------89899979999-9--999964879988


Q ss_pred             EEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf             586025788888888753100467527973300685799999999987198
Q gi|254780673|r  342 TIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR  392 (467)
Q Consensus       342 tii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~  392 (467)
                      -+|+--.-+..+.+|-+.    |.    +| .-+|||+.+-+.+++.+..+
T Consensus        82 I~iTA~~d~~~~~~Al~~----Ga----~D-YLvKPf~~erl~~~L~~y~~  123 (225)
T PRK10046         82 VFTTAASDMETVSEAVRC----GV----FD-YLIKPIAYERLGQTLTRFRQ  123 (225)
T ss_pred             EEEECCCCHHHHHHHHHC----CC----CC-CEECCCCHHHHHHHHHHHHH
T ss_conf             999689999999999974----99----83-10289999999999999999


No 383
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=28.68  E-value=37  Score=13.68  Aligned_cols=48  Identities=19%  Similarity=0.345  Sum_probs=37.9

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHH
Q ss_conf             650699932434458866532364754081110116666278998999
Q gi|254780673|r  157 DKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGI  204 (467)
Q Consensus       157 d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~  204 (467)
                      ....+++|||=..+||.|..++.|.-+.-.-++.|--++...|-.++.
T Consensus       128 ~~G~~vLGQ~Qd~~gG~Fd~~~sF~G~is~~n~W~~vLs~~eI~~~~~  175 (201)
T cd00152         128 PGGSIILGQEQDSYGGGFDATQSFVGEISDVNMWDSVLSPEEIKNVYS  175 (201)
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHH
T ss_conf             997699974456777763765431128732899931499999999985


No 384
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and 
Probab=28.67  E-value=37  Score=13.68  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             888888875310046752797330
Q gi|254780673|r  350 MTYATKAAIELEKNGIDAELIDLR  373 (467)
Q Consensus       350 ~~~a~~aa~~L~~~gi~~~vid~r  373 (467)
                      .....+.-+.|++.|||++.||..
T Consensus        13 ~~lq~~vF~~lA~~~ISvDfINI~   36 (67)
T cd04914          13 NDLQQRVFKALANAGISVDLINVS   36 (67)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             359999999999759857899866


No 385
>PRK10638 glutaredoxin 3; Provisional
Probab=28.48  E-value=37  Score=13.65  Aligned_cols=68  Identities=15%  Similarity=0.224  Sum_probs=43.8

Q ss_pred             CCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EEEEECCCCCCCHHHHHHHHH
Q ss_conf             874586025788888888753100467527973300685799999999987198----999957887676789999999
Q gi|254780673|r  339 SDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LVTVEEGYPQSSVGSTIANQV  413 (467)
Q Consensus       339 ~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i~vee~~~~gg~g~~i~~~i  413 (467)
                      ++|+|.+..+- ..|.+|...|...||..+.||+..    |.+......++||+    -|.++..+ .||+-. +.+.-
T Consensus         2 ~~V~Iysk~~C-pyC~~Ak~lL~~~gi~y~ei~v~~----~~~~~~~l~~~tg~~TVPqIfI~g~~-IGG~~d-l~~L~   73 (83)
T PRK10638          2 ANIEIYTKATC-PFCHRAKALLNSKGVSFQEIPIDG----DAAKREEMIKRSGRTTVPQIFIDAQH-IGGCDD-LYALD   73 (83)
T ss_pred             CCEEEEECCCC-HHHHHHHHHHHHCCCCCEEEECCC----CHHHHHHHHHHCCCCCCCEEEECCEE-EECHHH-HHHHH
T ss_conf             98899989999-679999999997599876998679----99999999973699961969999999-957899-99999


No 386
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=28.33  E-value=37  Score=13.64  Aligned_cols=116  Identities=18%  Similarity=0.279  Sum_probs=61.9

Q ss_pred             CCEEEE--ECCCCCEEEEHHHHHHHHHHHHHHHHC----CCCCEEEEECCCCCCCCHHHH-----------HHHHHHCC-
Q ss_conf             311444--316874586025788888888753100----467527973300685799999-----------99998719-
Q gi|254780673|r  330 GRARIH--RQGSDVTIISFGIGMTYATKAAIELEK----NGIDAELIDLRTIRPMDWQTI-----------FESVKKTG-  391 (467)
Q Consensus       330 Gk~~i~--~~G~ditii~~G~~~~~a~~aa~~L~~----~gi~~~vid~r~l~Pld~~~i-----------~~sv~kt~-  391 (467)
                      -|...+  ++|.-+.=.|.|-. +.|++|.+.=+.    -..+..|+-|..|+|+-.+..           .+.|++.. 
T Consensus       125 ~Kv~~V~~~~G~rVLDtC~GLG-YtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D  203 (287)
T COG2521         125 AKVELVKVKRGERVLDTCTGLG-YTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDD  203 (287)
T ss_pred             HHHHEECCCCCCEEEEECCCCC-HHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHCCCC
T ss_conf             5662444366878443246713-899999875874899996087727741358898420200317861659999741886


Q ss_pred             --CEEEEECCCCCCCHHHHH-HHHHHHHHHHHCC----------CCCEEECCCCCCCCCCHHHHHHCCC
Q ss_conf             --899995788767678999-9999996776428----------9829971777888889667656089
Q gi|254780673|r  392 --RLVTVEEGYPQSSVGSTI-ANQVQRKVFDYLD----------APILTITGRDVPMPYAANLEKLALP  447 (467)
Q Consensus       392 --~~i~vee~~~~gg~g~~i-~~~i~e~~f~~L~----------~p~~ri~~~d~p~P~~~~le~~~~p  447 (467)
                        -=.++|+-.+. +.+.++ +.....+.|..|+          .|=+|.-++|.|---+..|++...-
T Consensus       204 ~sfDaIiHDPPRf-S~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~  271 (287)
T COG2521         204 ESFDAIIHDPPRF-SLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFE  271 (287)
T ss_pred             CCCCEEEECCCCC-CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf             5301686079733-1023576899999999970769807997279874024677147899999861734


No 387
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=28.25  E-value=37  Score=13.63  Aligned_cols=18  Identities=17%  Similarity=0.123  Sum_probs=10.2

Q ss_pred             EEEEHHHHHHHHHHHHHH
Q ss_conf             586025788888888753
Q gi|254780673|r  342 TIISFGIGMTYATKAAIE  359 (467)
Q Consensus       342 tii~~G~~~~~a~~aa~~  359 (467)
                      -+|+||....+|++-...
T Consensus       387 Kli~~g~~R~~Ai~r~~r  404 (497)
T PRK08654        387 KLIVWGRTREEAIARMKR  404 (497)
T ss_pred             EEEEECCCHHHHHHHHHH
T ss_conf             367988999999999999


No 388
>pfam06508 ExsB ExsB. This family includes putative transcriptional regulators from Bacteria and Archaea.
Probab=28.17  E-value=25  Score=14.85  Aligned_cols=14  Identities=21%  Similarity=0.719  Sum_probs=6.7

Q ss_pred             CCCEEEEECCCCCC
Q ss_conf             67527973300685
Q gi|254780673|r  364 GIDAELIDLRTIRP  377 (467)
Q Consensus       364 gi~~~vid~r~l~P  377 (467)
                      |+.-.+||+.+++-
T Consensus        52 ~i~h~vidl~~l~~   65 (137)
T pfam06508        52 GVEHKIVDLDFLKQ   65 (137)
T ss_pred             CCCCEEECCCHHHH
T ss_conf             99750303302444


No 389
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=28.16  E-value=37  Score=13.62  Aligned_cols=100  Identities=16%  Similarity=0.214  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EE-EEECCCCCCC------HHHHHHHHHHHHHHHH
Q ss_conf             88888753100467527973300685799999999987198----99-9957887676------7899999999967764
Q gi|254780673|r  352 YATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LV-TVEEGYPQSS------VGSTIANQVQRKVFDY  420 (467)
Q Consensus       352 ~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i-~vee~~~~gg------~g~~i~~~i~e~~f~~  420 (467)
                      .|.+|.+-|.+.||+.+++|... .|+..+.|..-+++++.    ++ +=+..|+.-+      --.++.+.+.++. ..
T Consensus        12 t~rkA~~wL~~~~i~~~~~d~~~-~plt~~el~~~l~~~~~g~~~Lintr~~~yk~L~~~~~~ls~~e~i~ll~~~P-~L   89 (131)
T PRK01655         12 SCRKAKAWLEEHEIPFTERNIFS-SPLTIDEIKQILSMTEDGTDEIISTRSKVFQKLNVDVESLPLQDLIKLISDNP-GL   89 (131)
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHCC-CC
T ss_conf             89999999997699811567876-38999999999998189999987325204555389812199999999999591-21


Q ss_pred             CCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHH
Q ss_conf             2898299717778888896676560899899999
Q gi|254780673|r  421 LDAPILTITGRDVPMPYAANLEKLALPNVDEIIE  454 (467)
Q Consensus       421 L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I~~  454 (467)
                      |+.|+. +.....-+.|...--+.++|..-+..+
T Consensus        90 iKRPIl-~~~~~~~VGf~~e~i~~fLPr~~r~~~  122 (131)
T PRK01655         90 LRRPII-MDEKRLQVGYNEDEIRAFLPRKVRTFE  122 (131)
T ss_pred             EECCEE-EECCEEEECCCHHHHHHHCCHHHHHHH
T ss_conf             637579-759988963899999987798999999


No 390
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=28.03  E-value=38  Score=13.60  Aligned_cols=91  Identities=12%  Similarity=0.137  Sum_probs=47.9

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC----
Q ss_conf             8887531004675279733006857999999999871989999578876767899999999967764289829971----
Q gi|254780673|r  354 TKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTIT----  429 (467)
Q Consensus       354 ~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~----  429 (467)
                      -.+...|++.||+.+-   +.-++++.+.    +...-.+++.|+...         ..|.+. |......+..++    
T Consensus        47 ~~a~~~l~~~gid~~~---h~ar~i~~~~----~~~~DlIl~Md~~~~---------~~l~~~-~P~~~~kv~l~~~~~~  109 (144)
T PRK11391         47 ATAADVAANHGVSLEG---HAGRKLTAEM----ARNYDLILAMESEHI---------AQVTAI-APEVRGKTMLFGQWLE  109 (144)
T ss_pred             HHHHHHHHHCCCCCCC---CCCCCCCHHH----HHHCCEEEECCHHHH---------HHHHHH-CHHHHHHHHHHHHHCC
T ss_conf             9999999981999300---0022478879----866899998899999---------999975-9144315101633368


Q ss_pred             CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             777888889667656089989999999998502
Q gi|254780673|r  430 GRDVPMPYAANLEKLALPNVDEIIESVESICYK  462 (467)
Q Consensus       430 ~~d~p~P~~~~le~~~~p~~~~I~~av~~v~~~  462 (467)
                      ..|+|-||....+.+ --..+.|..+++..+.|
T Consensus       110 ~~~VpDPy~~~~~~f-e~~~~~I~~~~~~~~~~  141 (144)
T PRK11391        110 QKEIPDPYRKSQDAF-EHVYGMLERASQEWAKR  141 (144)
T ss_pred             CCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHH
T ss_conf             998989999898999-99999999999999998


No 391
>PRK01999 consensus
Probab=27.80  E-value=38  Score=13.57  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=14.2

Q ss_pred             CCCCCEE----EEHHHHHHHHHHHHHHHHCCC
Q ss_conf             1687458----602578888888875310046
Q gi|254780673|r  337 QGSDVTI----ISFGIGMTYATKAAIELEKNG  364 (467)
Q Consensus       337 ~G~diti----i~~G~~~~~a~~aa~~L~~~g  364 (467)
                      +|+++-|    |..|.++.   +|++.|.+.|
T Consensus       211 ~Gk~~IIVDDiIdTGgTl~---~aa~~L~~~G  239 (311)
T PRK01999        211 KGKNVILVDDMVDTAGTIT---KAADLMMEKG  239 (311)
T ss_pred             CCCEEEEECCHHHHHHHHH---HHHHHHHHCC
T ss_conf             7966999754444347899---9999998559


No 392
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=27.79  E-value=38  Score=13.57  Aligned_cols=63  Identities=19%  Similarity=0.255  Sum_probs=36.4

Q ss_pred             ECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEC--------CCCCC---CCHHHHHHHHHHCCCE-EEEECCCC
Q ss_conf             3168745860257888888887531004675279733--------00685---7999999999871989-99957887
Q gi|254780673|r  336 RQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDL--------RTIRP---MDWQTIFESVKKTGRL-VTVEEGYP  401 (467)
Q Consensus       336 ~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~--------r~l~P---ld~~~i~~sv~kt~~~-i~vee~~~  401 (467)
                      +.|+.++||+-|.   --|-||..|.+.|.+++|++-        +.--|   |+.+.|..-++.-..+ |.++-+..
T Consensus       437 ~~GkKVAVIGsGP---AGLsaA~~La~~G~~VtVFE~~~~~GG~L~yGIP~fRLPk~iv~~eI~~l~~lGV~~~~n~~  511 (760)
T PRK12778        437 KNGIKVAVIGSGP---AGLSFAGDMAKYGYDVTVFEALHEIGGVLKYGIPEFRLPNKIVDVEIENLVKMGVTFEKDCI  511 (760)
T ss_pred             CCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCE
T ss_conf             6899899989778---99999999997799069980588889757654861108789999999999864979989957


No 393
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=27.76  E-value=38  Score=13.57  Aligned_cols=48  Identities=15%  Similarity=0.367  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCCCC
Q ss_conf             1223554431136506999324344588665323647540811-10116666
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTPIT  195 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~pi~  195 (467)
                      |+..++.-.++....++ ...++  |||.+..-..++.+||=+ +++|..--
T Consensus        85 Ai~~~l~~ll~~Gd~iv-~~~~~--YggT~~l~~~~l~~~Gi~~~~vd~~d~  133 (386)
T PRK07811         85 ATDCLLRAVLRPGDHIV-IPNDA--YGGTFRLIDKVFTRWGVEYTPVDLSDL  133 (386)
T ss_pred             HHHHHHHHHHCCCCEEE-ECCCC--CHHHHHHHHHHHHHCCEEEEEECCCCH
T ss_conf             99999999838999899-37876--521999999998735804997788787


No 394
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=27.74  E-value=29  Score=14.34  Aligned_cols=63  Identities=24%  Similarity=0.130  Sum_probs=42.8

Q ss_pred             EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCC--CCCCHHHHHHHHHHCCCEEEEECC
Q ss_conf             443168745860257888888887531004675279733006--857999999999871989999578
Q gi|254780673|r  334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTI--RPMDWQTIFESVKKTGRLVTVEEG  399 (467)
Q Consensus       334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l--~Pld~~~i~~sv~kt~~~i~vee~  399 (467)
                      ....+.|..-++-=.++..|.+.|+.+   |+...+-++.+-  .+-+.....+..+|+|-+-|==|.
T Consensus       119 ~~f~~~df~~~ad~~Ll~~a~~~A~e~---gi~~hvgnv~ssD~FY~~~~~~~~~~~~~gvlaVeMEa  183 (236)
T COG0813         119 IRFKPHDFAPIADFELLEKAYETAKEL---GIDTHVGNVFSSDLFYNPDTEMFDLMAKYGVLAVEMEA  183 (236)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEH
T ss_conf             015765544559999999999999983---98715521664301357877799999983973787568


No 395
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=27.59  E-value=38  Score=13.55  Aligned_cols=47  Identities=17%  Similarity=0.306  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCCC
Q ss_conf             1223554431136506999324344588665323647540811-1011666
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTPI  194 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~pi  194 (467)
                      |+..++...++....++ ...++  |||.+..-..++.+||=+ +++|..-
T Consensus        91 Ais~~l~~ll~~Gd~vv-~~~~~--YggT~~l~~~~l~~~Gi~v~fvd~~d  138 (398)
T PRK08249         91 AISNTLYTFLSPGDRVV-SIKDT--YGGTNKIFEEFLPRMGVDVTLCETGD  138 (398)
T ss_pred             HHHHHHHHHHCCCCEEE-ECCCC--CHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             99999999718999899-81898--43799999976015986999879998


No 396
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=26.88  E-value=39  Score=13.46  Aligned_cols=86  Identities=16%  Similarity=0.244  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EE-EEECCCCCCCHH--------HHHHHHHHHHH
Q ss_conf             888888753100467527973300685799999999987198----99-995788767678--------99999999967
Q gi|254780673|r  351 TYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LV-TVEEGYPQSSVG--------STIANQVQRKV  417 (467)
Q Consensus       351 ~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i-~vee~~~~gg~g--------~~i~~~i~e~~  417 (467)
                      ..|.+|-+-|.+.||+.+++|++. .|++.+.|.+-+++++.    ++ +=...|+.-|+.        .++.+.+.++-
T Consensus        10 ~t~rka~~~L~~~~i~~~~id~~k-~plt~~eL~~~l~~~g~~~~~lin~r~~~~k~l~l~~~~~~ls~~e~~~ll~~~P   88 (111)
T cd03036          10 STCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLPSLSEEEALELLSSDG   88 (111)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             889999999998599839996147-7959999999999949899998605761545559300131389999999998594


Q ss_pred             HHHCCCCCEEECCCCCCCCCCH
Q ss_conf             7642898299717778888896
Q gi|254780673|r  418 FDYLDAPILTITGRDVPMPYAA  439 (467)
Q Consensus       418 f~~L~~p~~ri~~~d~p~P~~~  439 (467)
                       ..|+.|+..-+ ..+-+.|.+
T Consensus        89 -~LikRPIi~~~-~~~~vGf~~  108 (111)
T cd03036          89 -MLIKRPFVVDD-DKVLVGFKE  108 (111)
T ss_pred             -CEEECCEEEEC-CEEEECCCH
T ss_conf             -44755789889-999977874


No 397
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=26.88  E-value=39  Score=13.46  Aligned_cols=47  Identities=21%  Similarity=0.145  Sum_probs=28.6

Q ss_pred             CCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf             7458602578888888875310046752797330068579999999998
Q gi|254780673|r  340 DVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVK  388 (467)
Q Consensus       340 ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~  388 (467)
                      |+||..+-.- ..+.+|..-|++.||+.+++|.+.- |++.+.+..-++
T Consensus         1 ~it~Y~~P~C-~t~rka~~~Le~~gi~~~~~d~~~~-p~t~eeL~~~l~   47 (113)
T cd03033           1 DIIFYEKPGC-ANNARQKALLEAAGHEVEVRDLLTE-PWTAETLRPFFG   47 (113)
T ss_pred             CEEEEECCCC-HHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHHHHHHH
T ss_conf             9799978998-7579999999987999479861068-969999999998


No 398
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=26.81  E-value=39  Score=13.46  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=19.4

Q ss_pred             EECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             4316874586025788888888753100467527973
Q gi|254780673|r  335 HRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELID  371 (467)
Q Consensus       335 ~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid  371 (467)
                      .|.|+.|.||+.|.   -=|.||++|.+-|=+++|+-
T Consensus       148 krTGkkVAVVGSGP---AGLAaA~qLnrAGH~VTVfE  181 (517)
T TIGR01317       148 KRTGKKVAVVGSGP---AGLAAADQLNRAGHTVTVFE  181 (517)
T ss_pred             CCCCCEEEEECCCH---HHHHHHHHHHHCCCCEEEEE
T ss_conf             44786689975675---79999999853588389974


No 399
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=26.76  E-value=39  Score=13.45  Aligned_cols=28  Identities=14%  Similarity=0.285  Sum_probs=14.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
Q ss_conf             67678999999999677642898299717778888
Q gi|254780673|r  402 QSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMP  436 (467)
Q Consensus       402 ~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P  436 (467)
                      ..-+.+-+...+.++..       +-++.++.|+.
T Consensus       244 ~~Pv~AivGGi~aQEVI-------K~is~k~~Pi~  271 (286)
T cd01491         244 LSPMAAFFGGLAAQEVL-------KACSGKFTPLK  271 (286)
T ss_pred             ECHHHHHHHHHHHHHHH-------HHHHCCCCCCC
T ss_conf             88999999899999999-------98408998466


No 400
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=26.76  E-value=22  Score=15.17  Aligned_cols=69  Identities=14%  Similarity=0.146  Sum_probs=31.3

Q ss_pred             ECCCCCEEEEHHHHHHHH-HHHHHHHHCCCCCEEEEECCCCCCCCHH-HHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf             316874586025788888-8887531004675279733006857999-99999987198999957887676789999
Q gi|254780673|r  336 RQGSDVTIISFGIGMTYA-TKAAIELEKNGIDAELIDLRTIRPMDWQ-TIFESVKKTGRLVTVEEGYPQSSVGSTIA  410 (467)
Q Consensus       336 ~~G~ditii~~G~~~~~a-~~aa~~L~~~gi~~~vid~r~l~Pld~~-~i~~sv~kt~~~i~vee~~~~gg~g~~i~  410 (467)
                      ..|-++-|-+.|.+.+.. .--...|.+  .-.+...+..+.-++.. .+.+.++|++    ++++...|-=.|.|.
T Consensus       344 ~~~~~~~iasng~~~yl~aiv~~y~l~~--~~~~~~si~~~~~~~ksdlv~~i~~~~~----i~~~~~vgdr~sdi~  414 (459)
T PRK06698        344 ENNCSIYIASNGLTEYLRAIVSYYDLDQ--WVTETFSIEQINSLNKSDLVKSILNKYD----IKEAAVVGDRLSDIN  414 (459)
T ss_pred             HCCCCEEEECCCHHHHHHHHHHHHHHHH--HHHHHCCHHHHHCCCHHHHHHHHHHHCC----CCCCEEECCCHHHHH
T ss_conf             7499679964856999999999970678--8873135988713457689999998739----751158515155555


No 401
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=26.73  E-value=39  Score=13.45  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=11.9

Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf             6752797330068579999999998
Q gi|254780673|r  364 GIDAELIDLRTIRPMDWQTIFESVK  388 (467)
Q Consensus       364 gi~~~vid~r~l~Pld~~~i~~sv~  388 (467)
                      |++---+++-|=-|++.+.+-+..+
T Consensus       145 ~v~~v~VelV~dPpW~~dmmSeeak  169 (174)
T TIGR03406       145 NVDEVEVELVFDPPWSREMMSEAAK  169 (174)
T ss_pred             CCCEEEEEEEECCCCCHHHCCHHHH
T ss_conf             9664999999889989334779999


No 402
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.67  E-value=40  Score=13.44  Aligned_cols=16  Identities=13%  Similarity=0.011  Sum_probs=8.5

Q ss_pred             CHHHHHHHHHHHHCCC
Q ss_conf             9899999999985020
Q gi|254780673|r  448 NVDEIIESVESICYKR  463 (467)
Q Consensus       448 ~~~~I~~av~~v~~~~  463 (467)
                      +.+++-.++++.+..+
T Consensus       520 ~~~eL~~Al~~Al~~~  535 (570)
T PRK06725        520 NSTEAKQVMLEAFAHE  535 (570)
T ss_pred             CHHHHHHHHHHHHCCC
T ss_conf             9999999999998199


No 403
>KOG2772 consensus
Probab=26.64  E-value=30  Score=14.30  Aligned_cols=51  Identities=27%  Similarity=0.292  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECC--------------CCCCCCHHHHHHH-HHHCC-CEEEEECCC
Q ss_conf             8888888875310046752797330--------------0685799999999-98719-899995788
Q gi|254780673|r  349 GMTYATKAAIELEKNGIDAELIDLR--------------TIRPMDWQTIFES-VKKTG-RLVTVEEGY  400 (467)
Q Consensus       349 ~~~~a~~aa~~L~~~gi~~~vid~r--------------~l~Pld~~~i~~s-v~kt~-~~i~vee~~  400 (467)
                      .+.++++|++.|+.+||+|.+-=+.              -|.||= .-|+.- .+.|+ +-+...++.
T Consensus       147 sTwegI~Aar~le~~GIhcnmTllFSfaQAVacAea~vtliSpFV-gRi~dw~~~~t~~ka~~~~~dp  213 (337)
T KOG2772         147 STWEGIQAARELEEEGIHCNMTLLFSFAQAVACAEAGVTLISPFV-GRILDWYKANTGQKAYKAREDP  213 (337)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCEEEHHHH-HHHHHHHHHCCCCHHCCCCCCC
T ss_conf             532001789999964852426425779999999862986644678-7899999964672101346894


No 404
>KOG0398 consensus
Probab=26.61  E-value=40  Score=13.43  Aligned_cols=88  Identities=23%  Similarity=0.285  Sum_probs=47.8

Q ss_pred             CCEECCCCCHHHH--HH----HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             1101166662789--98----99998871886445666667899999999987886742117767888799830244576
Q gi|254780673|r  187 ERVIDTPITEHGF--AG----IGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAAR  260 (467)
Q Consensus       187 ~R~~d~pi~E~~~--~G----~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~  260 (467)
                      +-|+|++|-|+.-  .|    +-.=..+.|.+|+..|.            .++.+.|..+.|-++.+-|.+||       
T Consensus       125 kVVvnc~~~eA~~n~~~l~~am~~~~~ITG~kP~~~~a------------r~dV~twKlR~g~p~G~kVtL~G-------  185 (278)
T KOG0398         125 KVVVNCGIGEAAQNDKGLEAAMKDIALITGQKPIKTRA------------RADVATWKLREGQPLGIKVTLRG-------  185 (278)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE------------CCCCCCEEECCCCCCEEEEEEEC-------
T ss_conf             35432120776642777999999999874899620000------------15677412016972305899811-------


Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCC
Q ss_conf             444433216887632203138665221000105556541378
Q gi|254780673|r  261 VAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPN  302 (467)
Q Consensus       261 ~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~  302 (467)
                            .+..+++..+-+|  +.|. -.|++|+-.++-.-.+
T Consensus       186 ------~~My~FLs~L~el--vLPr-~rdfkGvSp~Sgd~~G  218 (278)
T KOG0398         186 ------DVMYSFLSRLIEL--VLPR-TRDFKGVSPSSGDGNG  218 (278)
T ss_pred             ------HHHHHHHHHHHHH--HCCC-CCCCCCCCCCCCCCCC
T ss_conf             ------6799999999997--5421-0003676887768878


No 405
>pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.
Probab=26.60  E-value=40  Score=13.43  Aligned_cols=33  Identities=12%  Similarity=0.291  Sum_probs=13.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCC--------CEEEEECC
Q ss_conf             0000000000012235544311365--------06999324
Q gi|254780673|r  134 HAPTSSITVREALRDAIAEEMRRDK--------DVFIMGEE  166 (467)
Q Consensus       134 ~~~~~~~TvRea~~~a~~e~m~~d~--------~~~~~ged  166 (467)
                      +.+...+.+.+-+.--..+.|+.||        +-|++...
T Consensus        23 GHpG~~ls~adi~~~L~~~~l~~~p~~p~w~~RDRfvLS~G   63 (333)
T pfam00456        23 GHPGAPMGMAPIAEVLFKRTLRHNPNDPKWPNRDRFVLSNG   63 (333)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
T ss_conf             98206889999999999998277977989989874999674


No 406
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions.  GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=26.52  E-value=40  Score=13.42  Aligned_cols=54  Identities=17%  Similarity=0.180  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EEEEECCCCCCCHHH
Q ss_conf             88888888753100467527973300685799999999987198----999957887676789
Q gi|254780673|r  349 GMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LVTVEEGYPQSSVGS  407 (467)
Q Consensus       349 ~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i~vee~~~~gg~g~  407 (467)
                      .=..|.+|...|.+.||..+-||+-.-    .+.-.+..++||+    -|.+.+-+ .||+-.
T Consensus        10 ~CpyC~~AK~lL~~kgi~y~ei~l~~~----~~~~~~l~~~tg~~TVPQIFi~~~~-IGG~~d   67 (73)
T cd03027          10 GCEDCTAVRLFLREKGLPYVEINIDIF----PERKAELEERTGSSVVPQIFFNEKL-VGGLTD   67 (73)
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHCCCCCCEEEECCEE-EECHHH
T ss_conf             996799999999987996499988899----8999999997199975979999999-828999


No 407
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=26.48  E-value=40  Score=13.42  Aligned_cols=51  Identities=24%  Similarity=0.544  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHC-CCCC-EEEEECCCCCCCCCCCCCCCH---------HHHCCCC-CEECCCCCH
Q ss_conf             0012235544311-3650-699932434458866532364---------7540811-101166662
Q gi|254780673|r  143 REALRDAIAEEMR-RDKD-VFIMGEEVAEYQGAYKVTQGL---------LQEFGCE-RVIDTPITE  196 (467)
Q Consensus       143 Rea~~~a~~e~m~-~d~~-~~~~gedv~~~~g~f~~t~gl---------~~~fg~~-R~~d~pi~E  196 (467)
                      ++.|++-|++... .|++ ||+||--- .|||-  -|.|+         ..+|-|. |.+-.++.|
T Consensus        39 K~eirekLAkmyK~~d~d~V~vfGfrT-~FGGG--kStGFalIYDsld~~KKfEPkyRL~R~Gl~e  101 (133)
T PTZ00071         39 KEDIKKRLAKLYKVADENTIVLFGFKT-KFGGG--RTTGFGLIYDNLAALKKFEPKYRLVRMGIIE  101 (133)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCEE-CCCCC--CEEEEEEEECCHHHHHHCCCCCEEEECCCCC
T ss_conf             999999999982889998799950272-47896--3102588854899997328611143236233


No 408
>KOG1549 consensus
Probab=26.20  E-value=40  Score=13.38  Aligned_cols=22  Identities=14%  Similarity=-0.016  Sum_probs=8.8

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             00000012235544311365069
Q gi|254780673|r  139 SITVREALRDAIAEEMRRDKDVF  161 (467)
Q Consensus       139 ~~TvRea~~~a~~e~m~~d~~~~  161 (467)
                      ...+-+|++..+.+. ..||+-+
T Consensus        56 ~~~Vldam~~~~~~~-~~nPh~~   77 (428)
T KOG1549          56 DPRVLDAMLPYLLEY-LGNPHSR   77 (428)
T ss_pred             CHHHHHHHHHHHHHH-HCCCCCC
T ss_conf             989999999999985-2599855


No 409
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=26.13  E-value=40  Score=13.37  Aligned_cols=17  Identities=18%  Similarity=0.204  Sum_probs=8.5

Q ss_pred             HCCCEEEEECCCCCCCH
Q ss_conf             71989999578876767
Q gi|254780673|r  389 KTGRLVTVEEGYPQSSV  405 (467)
Q Consensus       389 kt~~~i~vee~~~~gg~  405 (467)
                      |+.-+++|-++..++-+
T Consensus       195 ka~sv~~V~dnl~t~e~  211 (235)
T PRK05819        195 KALTILTVSDHIRTGEA  211 (235)
T ss_pred             CEEEEEEEEEEECCCCC
T ss_conf             67999999633056886


No 410
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein; InterPro: IPR010969   This entry describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulphurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N terminus. The function of members of this family are unknown..
Probab=26.10  E-value=40  Score=13.37  Aligned_cols=15  Identities=27%  Similarity=0.337  Sum_probs=8.8

Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             089989999999998
Q gi|254780673|r  445 ALPNVDEIIESVESI  459 (467)
Q Consensus       445 ~~p~~~~I~~av~~v  459 (467)
                      |+-+.+||.+.++.|
T Consensus       367 yFnt~ee~~~l~~al  381 (384)
T TIGR01977       367 YFNTEEEIEKLVEAL  381 (384)
T ss_pred             CCCCHHHHHHHHHHH
T ss_conf             778889999999998


No 411
>PRK12831 putative oxidoreductase; Provisional
Probab=26.05  E-value=41  Score=13.36  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=12.5

Q ss_pred             CCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             6874586025788888888753100467527973300
Q gi|254780673|r  338 GSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRT  374 (467)
Q Consensus       338 G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~  374 (467)
                      |+.+.||+=|++-..+...+..|   |-++.++..|+
T Consensus       281 Gk~VvVIGGGntA~D~arta~R~---GaeV~ivyrr~  314 (464)
T PRK12831        281 GKKVAVVGGGNVAMDAARTALRL---GAEVHIVYRRS  314 (464)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC---CCEEEEECCCC
T ss_conf             87789988855689999988742---97799970457


No 412
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839   This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include  CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme .  The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=25.94  E-value=41  Score=13.35  Aligned_cols=35  Identities=11%  Similarity=0.196  Sum_probs=16.5

Q ss_pred             HHHHHCCCEE-EEEECCHHCCCHHHHHHHC--CCCEEE
Q ss_conf             7632203138-6652210001055565413--783476
Q gi|254780673|r  272 WYSHVPGLKV-VIPYTASDAKGLLKAAIRD--PNPVIF  306 (467)
Q Consensus       272 ~~~~iPgl~V-~~P~~~~d~~~ll~~ai~~--~~Pvi~  306 (467)
                      ++..+|...+ +-|.+...+-.++..+...  ..++++
T Consensus        90 l~~~~p~~d~~~G~~~~~~~~~~i~~~~~g~~~~~~~~  127 (455)
T TIGR00089        90 LLKRIPEVDIVLGTQDVERIPELINSAEEGLREKQVVE  127 (455)
T ss_pred             HHHHCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             99645856999843137889999999863853335562


No 413
>PRK06703 flavodoxin; Provisional
Probab=25.83  E-value=41  Score=13.34  Aligned_cols=52  Identities=6%  Similarity=0.040  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf             78888888875310046752797330068579999999998719899995788767678
Q gi|254780673|r  348 IGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVG  406 (467)
Q Consensus       348 ~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g  406 (467)
                      +.-..|...++.|...|+.++++++....+-+       +.+...++++--.|-.|-+-
T Consensus        14 nte~~A~~i~~~l~~~g~~v~~~~~~~~~~~~-------l~~~d~li~gtsT~G~Ge~P   65 (151)
T PRK06703         14 NTEDIADLIKVSLDAFDHEVVLQEMDGMDAEE-------LLAYDGIILGSYTWGDGDLP   65 (151)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-------HHCCCCEEEEEECCCCCCCC
T ss_conf             78999999999998579963897603199889-------84288459997337998684


No 414
>TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190   This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised ..
Probab=25.81  E-value=41  Score=13.33  Aligned_cols=112  Identities=16%  Similarity=0.191  Sum_probs=64.2

Q ss_pred             HHHHHHHHCCCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHH
Q ss_conf             68876322031386652210001055565413783476402123333345334663121443114443168745860257
Q gi|254780673|r  269 YAAWYSHVPGLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGI  348 (467)
Q Consensus       269 ~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~  348 (467)
                      .+..+..-|-|.++.=-+-.|+..+=   +..+-|+        |            .  .-+.+...++=|+.|+|.|+
T Consensus        18 V~~ai~~~PDmElvgv~~Rrd~~t~~---va~~~~v--------y------------~--V~~~~K~~~dvdv~iLC~gs   72 (326)
T TIGR01921        18 VEEAIQQAPDMELVGVFRRRDAETLD---VAEELAV--------Y------------A--VVEDEKELEDVDVLILCTGS   72 (326)
T ss_pred             HHHHHHCCCCCEEEEEEEECCCCCCC---HHHCCCH--------H------------H--HHHHHHCCCCEEEEEECCCC
T ss_conf             99998408980489988707887576---1122520--------2------------2--22223202882599973886


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf             8888888875310046752797330068579999999998719899995788767678
Q gi|254780673|r  349 GMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVG  406 (467)
Q Consensus       349 ~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g  406 (467)
                      ..-+ -++++.|+.-=--++=+|.|+=-|=-.+++-+..++.|++=||--||-=|.|+
T Consensus        73 atd~-pe~~p~fA~~~nTvDsfD~H~~Ip~~r~~~DaaA~~~g~VSvis~GWDPG~fS  129 (326)
T TIGR01921        73 ATDL-PEQKPYFAAFINTVDSFDIHTDIPDLRRTLDAAAKEAGAVSVISAGWDPGLFS  129 (326)
T ss_pred             CCCC-CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH
T ss_conf             4555-43451001221012365022420789999999998619878998347887267


No 415
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=25.78  E-value=41  Score=13.33  Aligned_cols=108  Identities=19%  Similarity=0.230  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHH-CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             5788888888753100467527973300685799999999987-198999957887676789999999996776428982
Q gi|254780673|r  347 GIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKK-TGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPI  425 (467)
Q Consensus       347 G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~k-t~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~  425 (467)
                      |-....+.++.+.+.+.|++...--+-+=.-||++.|.+..+. .+++.+      ..|+|..+..-.  .+..-|+.-.
T Consensus       284 GD~~~~~~k~~~~~~~~g~dp~~k~iv~Sd~Lde~~i~~L~~~~~~~i~~------sfGIGT~Lt~D~--~~~~~L~~Vy  355 (400)
T PRK05321        284 GDPFEWGEKAIAHYEKLGIDPRTKTLVFSDGLDLDKALELYRHFRGRIRL------SFGIGTNLTNDL--PGVKPLNIVI  355 (400)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCC------EEECCCCCCCCC--CCCCCCCEEE
T ss_conf             78789999999999976999666479986999999999999986278764------575475510589--9998665788


Q ss_pred             EEECCCCCC-CCCCHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf             997177788-88896676560899899999999985020
Q gi|254780673|r  426 LTITGRDVP-MPYAANLEKLALPNVDEIIESVESICYKR  463 (467)
Q Consensus       426 ~ri~~~d~p-~P~~~~le~~~~p~~~~I~~av~~v~~~~  463 (467)
                      +.+-....| +-.|.+.+|...++ .++....|+|+.-.
T Consensus       356 KLve~~G~P~~KlSd~~~K~t~~~-~~~~~~~~~~f~~~  393 (400)
T PRK05321        356 KLVECNGQPVAKLSDSPGKTMCDD-PEFLRYLRQVFGVP  393 (400)
T ss_pred             EEEEECCEEEEEECCCCCCCCCCC-HHHHHHHHHHCCCC
T ss_conf             877668842345048977656997-89999999980999


No 416
>PRK05320 rhodanese superfamily protein; Provisional
Probab=25.76  E-value=41  Score=13.33  Aligned_cols=95  Identities=24%  Similarity=0.385  Sum_probs=52.1

Q ss_pred             CHHCCCHHHHHHHCC-CCEEEECCCCCCCCC---C---CCCCCCCEE-CC--CCCEEEEECCCCCEEEEHHHHHHHHHHH
Q ss_conf             100010555654137-834764021233333---4---533466312-14--4311444316874586025788888888
Q gi|254780673|r  287 ASDAKGLLKAAIRDP-NPVIFLENEILYGSS---F---EVPMVDDLV-IP--IGRARIHRQGSDVTIISFGIGMTYATKA  356 (467)
Q Consensus       287 ~~d~~~ll~~ai~~~-~Pvi~le~~~ly~~~---~---~~p~~~~~~-~p--~Gk~~i~~~G~ditii~~G~~~~~a~~a  356 (467)
                      |.+...++.....+. .+|++|.-|.-|...   |   --|....|. +|  +.+-.-..+++.|.+.++|.-  .|.+|
T Consensus       114 p~~~~~~~~~~~d~~~~~vvvID~RN~YE~~IG~Fk~Ai~P~~~~Frefp~~v~~~~~~~k~K~I~myCTGGI--RCEKa  191 (257)
T PRK05320        114 AATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRADLEGKTVVSFCTGGI--RCEKA  191 (257)
T ss_pred             CCCHHHHHHHCCCCCCCCEEEEECCCHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC--CHHHH
T ss_conf             0379999864235567846999554333320416678528897467777999997354225982999858980--28999


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCC
Q ss_conf             75310046752797330068579999999998719
Q gi|254780673|r  357 AIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTG  391 (467)
Q Consensus       357 a~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~  391 (467)
                      +..|.++|++ +      +.-|+ -.|++-.++++
T Consensus       192 s~yl~~~Gf~-~------VyqL~-GGIl~Y~~~~~  218 (257)
T PRK05320        192 AIHMKEVGID-N------VYQLE-GGILKYFEEVG  218 (257)
T ss_pred             HHHHHHCCCC-E------EEEEC-CHHHHHHHHCC
T ss_conf             9999875998-4------36746-11999998769


No 417
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.65  E-value=41  Score=13.31  Aligned_cols=50  Identities=20%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCCCCHH
Q ss_conf             1223554431136506999324344588665323647540811-1011666627
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTPITEH  197 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~pi~E~  197 (467)
                      |+.-++...++....+ +...++  |||.+..-+.++.+||=+ +++|-+-...
T Consensus        96 Ai~~~ll~ll~~Gdhi-v~~~~~--YggT~~l~~~~l~~~Gi~v~fv~d~~d~~  146 (436)
T PRK07812         96 AETFAILNLAGAGDHI-VSSPRL--YGGTYNLFHYTLPKLGIEVSFVEDPDDLD  146 (436)
T ss_pred             HHHHHHHHHHCCCCEE-EEECCC--CCCHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf             9999999961889889-994886--68789999999765287416967998899


No 418
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=25.61  E-value=41  Score=13.31  Aligned_cols=27  Identities=30%  Similarity=0.369  Sum_probs=15.4

Q ss_pred             CCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             7458602578888888875310046752797330
Q gi|254780673|r  340 DVTIISFGIGMTYATKAAIELEKNGIDAELIDLR  373 (467)
Q Consensus       340 ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r  373 (467)
                      |..|-+.|.+-.+|       .+.|+++..+..+
T Consensus       321 ~~~iA~vGlTE~eA-------~~~g~~~~~~~~~  347 (427)
T TIGR03385       321 DLTIASTGVTENEA-------KRLNIDYKTVFVK  347 (427)
T ss_pred             CCCEEEECCCHHHH-------HHCCCCEEEEEEC
T ss_conf             92559973849999-------8779987999986


No 419
>TIGR00511 aIF-2BII_fam translation initiation factor, putative, aIF-2BII family; InterPro: IPR005250   The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. So far, members of this family are found only in the euryarchaeota..
Probab=25.60  E-value=37  Score=13.62  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=10.9

Q ss_pred             CCCEEEEEECCHHCCCHHHHHHHC
Q ss_conf             031386652210001055565413
Q gi|254780673|r  277 PGLKVVIPYTASDAKGLLKAAIRD  300 (467)
Q Consensus       277 Pgl~V~~P~~~~d~~~ll~~ai~~  300 (467)
                      .|-+|+.-+|..-+-...+.|...
T Consensus       116 DG~T~lTHCNS~AA~SVIK~A~~~  139 (303)
T TIGR00511       116 DGDTVLTHCNSEAALSVIKKAYDE  139 (303)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHC
T ss_conf             787155300506799999877536


No 420
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=25.59  E-value=41  Score=13.31  Aligned_cols=41  Identities=15%  Similarity=0.140  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC
Q ss_conf             88888887531004675279733006857999999999871
Q gi|254780673|r  350 MTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKT  390 (467)
Q Consensus       350 ~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt  390 (467)
                      +.-+....+.|..-||.+++|-+|+=.|++.+...+...-+
T Consensus       187 TKPTQhSVk~Lr~~GI~PDiivcRse~~l~~~~k~KIa~fc  227 (255)
T cd03113         187 TKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFC  227 (255)
T ss_pred             CCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf             66428999999975899887998057869978999999854


No 421
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.49  E-value=41  Score=13.29  Aligned_cols=53  Identities=26%  Similarity=0.490  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCCCCHHHHH
Q ss_conf             1223554431136506999324344588665323647540811-1011666627899
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTPITEHGFA  200 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~pi~E~~~~  200 (467)
                      ||..++...++....++ +..|+  |||.|.....+.+|||=+ +++|....+....
T Consensus        90 AI~~~~l~ll~~GD~vl-~~~~~--YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~  143 (396)
T COG0626          90 AISTALLALLKAGDHVL-LPDDL--YGGTYRLFEKILQKFGVEVTFVDPGDDEALEA  143 (396)
T ss_pred             HHHHHHHHHCCCCCEEE-ECCCC--CCHHHHHHHHHHHHCCEEEEEECCCCHHHHHH
T ss_conf             99999998357999898-45776--43299999999985685999978997588998


No 422
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=25.36  E-value=24  Score=14.94  Aligned_cols=39  Identities=21%  Similarity=0.448  Sum_probs=25.9

Q ss_pred             EEEECCCCCEEEEHHH--HHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             4443168745860257--88888888753100467527973
Q gi|254780673|r  333 RIHRQGSDVTIISFGI--GMTYATKAAIELEKNGIDAELID  371 (467)
Q Consensus       333 ~i~~~G~ditii~~G~--~~~~a~~aa~~L~~~gi~~~vid  371 (467)
                      +++.++-++.||+.|.  .+...-++.+.|.+.||.+.+-+
T Consensus        53 ~ll~~~~evlviGTG~~g~l~v~p~~~~~l~~~gi~v~~~~   93 (117)
T cd05126          53 ELLEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLP   93 (117)
T ss_pred             HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEC
T ss_conf             99971999999858968656489999999997598189837


No 423
>KOG2012 consensus
Probab=25.35  E-value=35  Score=13.85  Aligned_cols=41  Identities=17%  Similarity=0.109  Sum_probs=16.7

Q ss_pred             CEEEEHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCHH
Q ss_conf             45860257888888887531004--675279733006857999
Q gi|254780673|r  341 VTIISFGIGMTYATKAAIELEKN--GIDAELIDLRTIRPMDWQ  381 (467)
Q Consensus       341 itii~~G~~~~~a~~aa~~L~~~--gi~~~vid~r~l~Pld~~  381 (467)
                      +|+=.+=+...++++.|..+.+.  .-+++.+|...-.|--.+
T Consensus       594 CTlknFPn~IeHTiqWAR~eFEg~F~~~~e~vN~yls~p~f~e  636 (1013)
T KOG2012         594 CTLKSFPNAIEHTIQWARDEFEGLFKQSAENVNKYLSDPVFYE  636 (1013)
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH
T ss_conf             4504684577899999999978776178999998865811777


No 424
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=25.33  E-value=35  Score=13.83  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=25.5

Q ss_pred             CCCEEEEHHHH-HHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             87458602578-888888875310046752797330
Q gi|254780673|r  339 SDVTIISFGIG-MTYATKAAIELEKNGIDAELIDLR  373 (467)
Q Consensus       339 ~ditii~~G~~-~~~a~~aa~~L~~~gi~~~vid~r  373 (467)
                      -|+.|+++|.. .....+..+.|.++||.+|+-|-.
T Consensus        53 peilliGtG~~~~~~~~~~~~~l~~~gI~vE~M~T~   88 (109)
T cd05560          53 PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ   88 (109)
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCH
T ss_conf             968999448865799999999999859905996769


No 425
>PRK10853 hypothetical protein; Provisional
Probab=25.19  E-value=42  Score=13.26  Aligned_cols=91  Identities=18%  Similarity=0.231  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC-EEEEE--CCCCCCC--------HHHHHHHHHHHHHHHH
Q ss_conf             88888753100467527973300685799999999987198-99995--7887676--------7899999999967764
Q gi|254780673|r  352 YATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR-LVTVE--EGYPQSS--------VGSTIANQVQRKVFDY  420 (467)
Q Consensus       352 ~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~-~i~ve--e~~~~gg--------~g~~i~~~i~e~~f~~  420 (467)
                      .|.+|.+-|.++||+.+.+|+|- .|++.+.+..-+++.|. -++=-  -.|+.-+        -..+..+.+.++. ..
T Consensus        12 TckKA~kwL~~~~i~y~f~D~k~-~~~~~~~l~~wl~~~G~~~liN~rgtt~R~L~~~~k~~~~~~~~~~~Ll~~~p-~L   89 (118)
T PRK10853         12 TIKKARRWLEENGIDYRFHDYRV-DGLDSELLNGFIAELGWEALLNTRGTTWRKLDETQRNAITDAASAAALMLEQP-AI   89 (118)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCC-CCCCHHHHHHHHHHCCHHHHHCCCCCHHHHCCHHHHHCCCCHHHHHHHHHHCC-CC
T ss_conf             99999999998799818963114-69899999999996298987516663566468745312488899999998686-74


Q ss_pred             CCCCCEEECCCCCCCCCCHHHHHH
Q ss_conf             289829971777888889667656
Q gi|254780673|r  421 LDAPILTITGRDVPMPYAANLEKL  444 (467)
Q Consensus       421 L~~p~~ri~~~d~p~P~~~~le~~  444 (467)
                      ++.|+.-.....+-+.|.+..-+.
T Consensus        90 IKRPvi~~~~~~~~vGF~e~~y~~  113 (118)
T PRK10853         90 IKRPLLCAPGKPMLLGFSESSYQQ  113 (118)
T ss_pred             CCCCEEEECCCEEEECCCHHHHHH
T ss_conf             257769848987996279999999


No 426
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=25.10  E-value=42  Score=13.25  Aligned_cols=13  Identities=15%  Similarity=0.102  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             2789989999887
Q gi|254780673|r  196 EHGFAGIGIGASF  208 (467)
Q Consensus       196 E~~~~G~a~G~A~  208 (467)
                      |++.+.+|-|+|.
T Consensus        52 E~~A~~mAdgyar   64 (589)
T PRK07525         52 EQNAGHMADGYTR   64 (589)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             8999999999999


No 427
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121   Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres.   In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=25.00  E-value=42  Score=13.23  Aligned_cols=10  Identities=40%  Similarity=0.870  Sum_probs=3.5

Q ss_pred             CCEEEEHHHH
Q ss_conf             7458602578
Q gi|254780673|r  340 DVTIISFGIG  349 (467)
Q Consensus       340 ditii~~G~~  349 (467)
                      |+|=.|||+.
T Consensus       817 DLTQ~TfG~S  826 (920)
T TIGR01828       817 DLTQMTFGFS  826 (920)
T ss_pred             CHHHCCCCCC
T ss_conf             2002135511


No 428
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=24.96  E-value=26  Score=14.72  Aligned_cols=26  Identities=31%  Similarity=0.313  Sum_probs=19.2

Q ss_pred             CCCCCC-----CCCCHHHHCCCCCEECCCCC
Q ss_conf             588665-----32364754081110116666
Q gi|254780673|r  170 YQGAYK-----VTQGLLQEFGCERVIDTPIT  195 (467)
Q Consensus       170 ~~g~f~-----~t~gl~~~fg~~R~~d~pi~  195 (467)
                      ..|+-|     +|.-|.++|+|+.++++|++
T Consensus        48 ~sGIGKVnAA~~t~~LI~~F~~d~IIntGvA   78 (236)
T PRK06714         48 ITGVGKVSCASCVQLLISEFQPDELFMTGIC   78 (236)
T ss_pred             ECCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             6782299999999999984499999987863


No 429
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=24.91  E-value=43  Score=13.22  Aligned_cols=10  Identities=10%  Similarity=0.172  Sum_probs=4.9

Q ss_pred             HHHHHHHHHH
Q ss_conf             7899899998
Q gi|254780673|r  197 HGFAGIGIGA  206 (467)
Q Consensus       197 ~~~~G~a~G~  206 (467)
                      .|+.-+|+||
T Consensus        98 ~HLfrVasGL  107 (429)
T PRK00045         98 RHLFRVASGL  107 (429)
T ss_pred             HHHHHHHHCC
T ss_conf             9999997332


No 430
>PRK05967 cystathionine beta-lyase; Provisional
Probab=24.63  E-value=43  Score=13.19  Aligned_cols=47  Identities=17%  Similarity=0.293  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCCC
Q ss_conf             1223554431136506999324344588665323647540811-1011666
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTPI  194 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~pi  194 (467)
                      |+.-++...++....++ ...++  |||.+..-+.++.+||=+ +++|.-.
T Consensus        91 Ai~~~ll~~l~~Gdhiv-~~~~~--YggT~~l~~~~l~~~Gi~v~~vd~~~  138 (392)
T PRK05967         91 AVTVPLLGFLSAGDHAL-IVDSV--YYPTRHFADTMLKRLGVEVEYYDPEI  138 (392)
T ss_pred             HHHHHHHHHHCCCCEEE-ECCCC--CCHHHHHHHHHHHHCCEEEEEECCCC
T ss_conf             99999999738998899-44898--44589999998763686999988999


No 431
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=24.60  E-value=43  Score=13.18  Aligned_cols=53  Identities=13%  Similarity=0.115  Sum_probs=36.4

Q ss_pred             EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC--CCCHHHHHHHHH
Q ss_conf             4431687458602578888888875310046752797330068--579999999998
Q gi|254780673|r  334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIR--PMDWQTIFESVK  388 (467)
Q Consensus       334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~--Pld~~~i~~sv~  388 (467)
                      +...|+.+.+|+=|++-..+...|..|-.  -++.++--|+..  |-..+.+..+.+
T Consensus       464 i~~~GK~VvVIGGGntAmDcaRtA~RlGA--~~Vt~vYRR~~~eMPA~~~Ev~~A~E  518 (654)
T PRK12769        464 INTAGLNVVVLGGGDTAMDCVRTALRHGA--SNVTCAYRRDEANMPGSKKEVKNARE  518 (654)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC--CEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf             55557558998887246999999997599--83660454672349987566557885


No 432
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.57  E-value=35  Score=13.79  Aligned_cols=34  Identities=15%  Similarity=0.078  Sum_probs=16.3

Q ss_pred             HHCCCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCC
Q ss_conf             2203138665221000105556541378347640212
Q gi|254780673|r  275 HVPGLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEI  311 (467)
Q Consensus       275 ~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~  311 (467)
                      .-||-+|.+|++..=   +|-..++.=+-|+++.|..
T Consensus       328 a~~Ga~V~A~AdG~V---vyA~~l~GYG~vvIldhG~  361 (420)
T COG4942         328 ASAGATVKAIADGRV---VYADWLRGYGLVVILDHGG  361 (420)
T ss_pred             CCCCCEEEECCCCEE---EECHHHCCCCEEEEEECCC
T ss_conf             599982562069569---9543325675699997488


No 433
>PRK11536 hypothetical protein; Provisional
Probab=24.54  E-value=38  Score=13.56  Aligned_cols=10  Identities=10%  Similarity=0.331  Sum_probs=4.0

Q ss_pred             ECCCCCEEEE
Q ss_conf             3168745860
Q gi|254780673|r  336 RQGSDVTIIS  345 (467)
Q Consensus       336 ~~G~ditii~  345 (467)
                      +.|+.+.++.
T Consensus       155 ~agD~i~l~~  164 (223)
T PRK11536        155 SADAPLELVS  164 (223)
T ss_pred             CCCCEEEEEE
T ss_conf             6999789973


No 434
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=24.50  E-value=43  Score=13.19  Aligned_cols=22  Identities=36%  Similarity=0.410  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             8888888875310046752797
Q gi|254780673|r  349 GMTYATKAAIELEKNGIDAELI  370 (467)
Q Consensus       349 ~~~~a~~aa~~L~~~gi~~~vi  370 (467)
                      .+.+.++|++.|+++||.|-+-
T Consensus       133 aTweGi~A~~~Le~~GI~~n~T  154 (313)
T cd00957         133 ATWEGIQAAKQLEKEGIHCNLT  154 (313)
T ss_pred             CCHHHHHHHHHHHHCCCCEEEE
T ss_conf             8788999999999749854367


No 435
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=24.49  E-value=43  Score=13.17  Aligned_cols=58  Identities=24%  Similarity=0.251  Sum_probs=36.5

Q ss_pred             CCCEEEEHH-HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf             874586025-788888888753100467527973300685799999999987198999957
Q gi|254780673|r  339 SDVTIISFG-IGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEE  398 (467)
Q Consensus       339 ~ditii~~G-~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee  398 (467)
                      .++.|+..+ .....|++.+..|.++||.|+ +|++.- .+....=...-.+...+|+|-+
T Consensus       324 ~~v~v~~~~~~~~~~a~~i~~~Lr~~gi~v~-~~~~~~-~l~k~~~~A~~~~~~~~vivG~  382 (417)
T PRK00037        324 VDVYVVVLGEEAEAAALKLAEKLRAAGIRVE-LDLGGR-KLKKQFKYADKSGARFALILGE  382 (417)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHHHHCCCEEE-EECCCC-CHHHHHHHHHHCCCCEEEEECC
T ss_conf             7679996598999999999999998899699-958998-9999999999879799999874


No 436
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=24.31  E-value=44  Score=13.15  Aligned_cols=18  Identities=22%  Similarity=0.453  Sum_probs=8.5

Q ss_pred             HHHHHHHHHCCCCCEEEE
Q ss_conf             223554431136506999
Q gi|254780673|r  146 LRDAIAEEMRRDKDVFIM  163 (467)
Q Consensus       146 ~~~a~~e~m~~d~~~~~~  163 (467)
                      ..+.+++.+++..+|.++
T Consensus        87 ~a~~i~~~l~~G~~Va~l  104 (241)
T PRK05990         87 SAEAVAAHLDAGRDVAVI  104 (241)
T ss_pred             HHHHHHHHHHCCCEEEEE
T ss_conf             999999999769969999


No 437
>PRK07503 methionine gamma-lyase; Provisional
Probab=24.23  E-value=44  Score=13.14  Aligned_cols=47  Identities=26%  Similarity=0.408  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC-CCEECCCC
Q ss_conf             122355443113650699932434458866532364754081-11011666
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGC-ERVIDTPI  194 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~-~R~~d~pi  194 (467)
                      |+..++...++....+ +...++  |||.+..-+.++.+||= -+++|.--
T Consensus        92 Ai~~~l~~~l~~Gdhi-v~~~~~--YGgt~~l~~~~l~~~Gi~~~~vd~~d  139 (403)
T PRK07503         92 AITATLWTLLRPGDEV-IVGRTL--YGCTFAFLHHGLGEFGVKVRHVDLTD  139 (403)
T ss_pred             HHHHHHHHHCCCCCEE-EECCCC--CCCHHHHHHHHHHHCCEEEEEECCCC
T ss_conf             9999999965999989-976887--53289999844631775999868989


No 438
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=24.14  E-value=44  Score=13.12  Aligned_cols=51  Identities=16%  Similarity=0.253  Sum_probs=36.2

Q ss_pred             HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC
Q ss_conf             9998719899995788767678999999999677642898299717778--88889
Q gi|254780673|r  385 ESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA  438 (467)
Q Consensus       385 ~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~  438 (467)
                      +++-|-+++|+|||+...|--...|...+-+-+-   +.--.|+++|.+  |+.|+
T Consensus       343 ~~~v~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGA---keVh~ri~sPpi~~pc~yG  395 (475)
T PRK07631        343 RGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGA---TEVHVRISSPPIAHPCFYG  395 (475)
T ss_pred             CCCCCCCEEEEEECCEECCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC
T ss_conf             2003897379974435106419999999997699---8899996899857876664


No 439
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=24.11  E-value=44  Score=13.12  Aligned_cols=55  Identities=22%  Similarity=0.250  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EEEEECCCCCCCHHHH
Q ss_conf             88888888753100467527973300685799999999987198----9999578876767899
Q gi|254780673|r  349 GMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LVTVEEGYPQSSVGST  408 (467)
Q Consensus       349 ~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i~vee~~~~gg~g~~  408 (467)
                      .=..|.+|.+.|.+.||..+.+|+..    |.+...+..+.+|.    .|++.+ ...+||-.+
T Consensus         9 ~C~~C~~ak~~L~~~gi~y~~~di~~----d~~~~~~l~~~~g~~~vP~i~i~~-~~i~Gf~~~   67 (73)
T cd02976           9 DCPYCKATKRFLDERGIPFEEVDVDE----DPEALEELKKLNGYRSVPVVVIGD-EHLSGFRPD   67 (73)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHCCCCCCCEEEECC-EEEECCCHH
T ss_conf             99779999999998399049998799----999999999865999618899999-999387999


No 440
>pfam00274 Glycolytic Fructose-bisphosphate aldolase class-I.
Probab=24.10  E-value=44  Score=13.12  Aligned_cols=30  Identities=23%  Similarity=0.208  Sum_probs=18.8

Q ss_pred             CCCHHHHHHHHHHHHH-------CCCCCHHH---HHHHHH
Q ss_conf             6662789989999887-------18864456---666678
Q gi|254780673|r  193 PITEHGFAGIGIGASF-------AGLKPIVE---FMTFNF  222 (467)
Q Consensus       193 pi~E~~~~G~a~G~A~-------~G~~Piv~---~~~~~f  222 (467)
                      --|+.++.--|-+||.       +|+-||||   .|..+.
T Consensus       143 ~PS~~~I~~Na~~LArYA~icQ~~glVPIVEPEVlmdG~H  182 (348)
T pfam00274       143 TPSELAIEENANVLARYAAICQQNGLVPIVEPEILLDGDH  182 (348)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCC
T ss_conf             9859999999999999999998659622003313104765


No 441
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.99  E-value=44  Score=13.10  Aligned_cols=60  Identities=25%  Similarity=0.249  Sum_probs=40.0

Q ss_pred             ECCCCCEEEEHHHHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCC--CEEEEECC
Q ss_conf             316874586025788-88888875310046752797330068579999999998719--89999578
Q gi|254780673|r  336 RQGSDVTIISFGIGM-TYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTG--RLVTVEEG  399 (467)
Q Consensus       336 ~~G~ditii~~G~~~-~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~--~~i~vee~  399 (467)
                      ....|+.|++.|... ..|++.+..|.+.||++++.-...-    ...-++.+.|-+  -+|++-|.
T Consensus       333 ~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~----~k~q~k~A~~~g~~~~viiGe~  395 (429)
T COG0124         333 ETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRK----LKKQFKYADKLGARFAVILGED  395 (429)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHCCCCEEEEECCH
T ss_conf             77788899984861599999999999975994899855656----8999999987799889998525


No 442
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=23.98  E-value=41  Score=13.33  Aligned_cols=71  Identities=24%  Similarity=0.206  Sum_probs=43.6

Q ss_pred             HHHHCCC-EEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHH
Q ss_conf             6322031-386652210001055565413783476402123333345334663121443114443168745860257888
Q gi|254780673|r  273 YSHVPGL-KVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMT  351 (467)
Q Consensus       273 ~~~iPgl-~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~  351 (467)
                      ...+||- .++.|.-..|+.+|++.|.+.-.         +|++.             |          +.|  ==.++.
T Consensus        57 ~~~v~G~v~e~~~~ls~d~e~mi~eA~~L~~---------~~~~~-------------~----------i~I--KIP~T~  102 (239)
T COG0176          57 LKIVPGRVTEVDEVLSFDAEAMIEEARRLAK---------LIDNV-------------G----------IVI--KIPATW  102 (239)
T ss_pred             HHCCCCCCEEEEEEECCCHHHHHHHHHHHHH---------HCCCC-------------C----------EEE--EECCCH
T ss_conf             8347998737641002368999999999998---------64877-------------7----------389--948888


Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             88888753100467527973300685
Q gi|254780673|r  352 YATKAAIELEKNGIDAELIDLRTIRP  377 (467)
Q Consensus       352 ~a~~aa~~L~~~gi~~~vid~r~l~P  377 (467)
                      +-++|++.|.++||+|.+-=+.+..-
T Consensus       103 eGl~Ai~~L~~eGI~~NvTLiFS~~Q  128 (239)
T COG0176         103 EGLKAIKALEAEGIKTNVTLIFSAAQ  128 (239)
T ss_pred             HHHHHHHHHHHCCCEEEEEEEECHHH
T ss_conf             78999999997897065888846899


No 443
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=23.87  E-value=44  Score=13.09  Aligned_cols=97  Identities=18%  Similarity=0.223  Sum_probs=53.1

Q ss_pred             CCCEEEEH--HHHHHHHHHHHHHH---HCCCC-CEEEEECCCCCCCCH--HH-------HHHHHHHCCCEEEEECCCCCC
Q ss_conf             87458602--57888888887531---00467-527973300685799--99-------999998719899995788767
Q gi|254780673|r  339 SDVTIISF--GIGMTYATKAAIEL---EKNGI-DAELIDLRTIRPMDW--QT-------IFESVKKTGRLVTVEEGYPQS  403 (467)
Q Consensus       339 ~ditii~~--G~~~~~a~~aa~~L---~~~gi-~~~vid~r~l~Pld~--~~-------i~~sv~kt~~~i~vee~~~~g  403 (467)
                      -|..+|..  -+....|+--|+.+   .++|+ .-.-+.=.||.|=+.  +.       -++++-|-+++|+|||+...|
T Consensus       284 ~~~DvVi~VPdSg~~aA~Gya~~~gip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~~~~~i~gK~vvlVDDSIVRG  363 (484)
T PRK07272        284 VDADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRG  363 (484)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCCCC
T ss_conf             77872500788538999999987299511051450311345789967888873634010254553797599982541126


Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCC
Q ss_conf             678999999999677642898299717778--88889
Q gi|254780673|r  404 SVGSTIANQVQRKVFDYLDAPILTITGRDV--PMPYA  438 (467)
Q Consensus       404 g~g~~i~~~i~e~~f~~L~~p~~ri~~~d~--p~P~~  438 (467)
                      --...|...+-+-+-   +.--.|+++|.+  |+.|+
T Consensus       364 tT~k~iv~~Lr~aGA---keVh~rissPpi~~pc~yG  397 (484)
T PRK07272        364 TTSRRIVKLLKEAGA---KEVHVRIASPELKYPCFYG  397 (484)
T ss_pred             CCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCC
T ss_conf             759999999997799---8899996899857875565


No 444
>TIGR02408 ectoine_ThpD ectoine hydroxylase; InterPro: IPR012774    Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.; GO: 0016725 oxidoreductase activity acting on CH or CH2 groups.
Probab=23.74  E-value=29  Score=14.43  Aligned_cols=53  Identities=15%  Similarity=0.264  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHH--HHCCCEEEEEECCHHCCCHHHHHHHCCCCEEEEC--CCCCCCCCCCCCCC
Q ss_conf             443321688763--2203138665221000105556541378347640--21233333453346
Q gi|254780673|r  263 AQHSQCYAAWYS--HVPGLKVVIPYTASDAKGLLKAAIRDPNPVIFLE--NEILYGSSFEVPMV  322 (467)
Q Consensus       263 ~~Hs~~~~~~~~--~iPgl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le--~~~ly~~~~~~p~~  322 (467)
                      .+|| +||.|.+  ++|+|+-++.|=      +|-.=...++|.+++.  ||--|+.-+|.|.+
T Consensus       126 YWHS-DFETWHaEDGmP~~RavScSi------aLT~N~~tNG~LM~~PGSH~tF~~CvGETP~D  182 (278)
T TIGR02408       126 YWHS-DFETWHAEDGMPAMRAVSCSI------ALTENYETNGSLMVVPGSHKTFLSCVGETPKD  182 (278)
T ss_pred             EECC-CCCCCCHHCCCCHHHHHHHHH------HHCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             2107-732000322762134654445------41157777886365268630126688889861


No 445
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=23.72  E-value=45  Score=13.07  Aligned_cols=16  Identities=13%  Similarity=0.129  Sum_probs=8.9

Q ss_pred             HCCCEEEEECCCCCCC
Q ss_conf             7198999957887676
Q gi|254780673|r  389 KTGRLVTVEEGYPQSS  404 (467)
Q Consensus       389 kt~~~i~vee~~~~gg  404 (467)
                      |+.-+++|-++..++-
T Consensus       196 kA~svl~V~dn~~~~e  211 (233)
T PRK13374        196 EALAILTVSDHIITGE  211 (233)
T ss_pred             CEEEEEEEEEECCCCC
T ss_conf             5789999960047687


No 446
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=23.71  E-value=45  Score=13.07  Aligned_cols=94  Identities=19%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC----EE-EEECCCCCCCH------HHHHHHHHHHHHHH
Q ss_conf             888888753100467527973300685799999999987198----99-99578876767------89999999996776
Q gi|254780673|r  351 TYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR----LV-TVEEGYPQSSV------GSTIANQVQRKVFD  419 (467)
Q Consensus       351 ~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~----~i-~vee~~~~gg~------g~~i~~~i~e~~f~  419 (467)
                      ..|.+|.+.|.++||+.+++|.+- .|++.+.+.+-+++++.    ++ +=+..|+.-++      -.++...+.++. .
T Consensus        11 st~rkA~~~L~~~~i~~~~~d~~k-~~~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~~~~~~ls~~e~~~ll~~~P-~   88 (115)
T cd03032          11 SSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDIDELSLSELIRLISEHP-S   88 (115)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEEC-CCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHCC-C
T ss_conf             899999999998699718997425-89699999999998379999998632346776177732189999999999584-1


Q ss_pred             HCCCCCEEECCCCCCCCCCHHHHHHCCC
Q ss_conf             4289829971777888889667656089
Q gi|254780673|r  420 YLDAPILTITGRDVPMPYAANLEKLALP  447 (467)
Q Consensus       420 ~L~~p~~ri~~~d~p~P~~~~le~~~~p  447 (467)
                      .++.|+.. ....+-+.|.+.--+.++|
T Consensus        89 LikRPIv~-~~~~~~iGf~~e~~~~~lp  115 (115)
T cd03032          89 LLRRPIII-DEKRLQIGYNEDEIRQFLP  115 (115)
T ss_pred             EEEEEEEE-ECCEEEECCCHHHHHHHCC
T ss_conf             06401797-3998997379899997584


No 447
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=23.69  E-value=45  Score=13.07  Aligned_cols=43  Identities=23%  Similarity=0.239  Sum_probs=25.4

Q ss_pred             EECCCCCEE----EEHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCCC
Q ss_conf             431687458----60257888888887531004675-27973300685
Q gi|254780673|r  335 HRQGSDVTI----ISFGIGMTYATKAAIELEKNGID-AELIDLRTIRP  377 (467)
Q Consensus       335 ~~~G~diti----i~~G~~~~~a~~aa~~L~~~gi~-~~vid~r~l~P  377 (467)
                      +.+|+.+.|    ++.|.++..+.+..++...+=+. +-+||+..++-
T Consensus       110 i~~g~~VlivDDvlaTGGT~~a~~~Lv~~~ga~v~~~~~liel~~l~G  157 (174)
T PRK02304        110 IKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGG  157 (174)
T ss_pred             CCCCCEEEEEEEHHHHCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC
T ss_conf             589999999971543071799999999987998999999998187884


No 448
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=23.64  E-value=45  Score=13.06  Aligned_cols=22  Identities=23%  Similarity=0.184  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             999999878867421177678887998302
Q gi|254780673|r  226 AIDQIINSAAKTRYMSGGQITTSIVFRGPN  255 (467)
Q Consensus       226 a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~  255 (467)
                      .|-.-+|.|+.        +++||+|.+-+
T Consensus       175 ~fhEalN~A~~--------~~LPviFv~eN  196 (343)
T CHL00149        175 QFFECLNMAVL--------WKLPIIFVVEN  196 (343)
T ss_pred             HHHHHHHHHHH--------HCCCEEEEEEE
T ss_conf             89999999998--------47976899987


No 449
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=23.57  E-value=45  Score=13.05  Aligned_cols=109  Identities=17%  Similarity=0.244  Sum_probs=50.0

Q ss_pred             CCEEEEEECCHHCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHH
Q ss_conf             31386652210001055565413783476402123333345334663121443114443168745860257888888887
Q gi|254780673|r  278 GLKVVIPYTASDAKGLLKAAIRDPNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAA  357 (467)
Q Consensus       278 gl~V~~P~~~~d~~~ll~~ai~~~~Pvi~le~~~ly~~~~~~p~~~~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa  357 (467)
                      .-.++.-||-.|++++=++. +..-|+.+++++- |.      .-++|...+-+ .+...+-|+ |+.-|+|--..-+--
T Consensus        28 a~i~~Visd~~~A~~lerA~-~~gIpt~~~~~k~-~~------~r~~~d~~l~~-~l~~~~~dl-vvLAGyMrIL~~~fl   97 (200)
T COG0299          28 AEIVAVISDKADAYALERAA-KAGIPTVVLDRKE-FP------SREAFDRALVE-ALDEYGPDL-VVLAGYMRILGPEFL   97 (200)
T ss_pred             CEEEEEEECCCCCHHHHHHH-HCCCCEEEECCCC-CC------CHHHHHHHHHH-HHHHCCCCE-EEECCHHHHCCHHHH
T ss_conf             17999995797778999999-8499889744456-78------77899999999-998529999-998664777599999


Q ss_pred             HHHHCCCCCEEEEECC-CCCCCC--HHHHHHHH----HHCCCEE-EEECCCC
Q ss_conf             5310046752797330-068579--99999999----8719899-9957887
Q gi|254780673|r  358 IELEKNGIDAELIDLR-TIRPMD--WQTIFESV----KKTGRLV-TVEEGYP  401 (467)
Q Consensus       358 ~~L~~~gi~~~vid~r-~l~Pld--~~~i~~sv----~kt~~~i-~vee~~~  401 (467)
                      +.++.     .+||++ +|-|.-  ..++.+..    +-||.-| .|+|+.-
T Consensus        98 ~~~~g-----rIlNIHPSLLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD  144 (200)
T COG0299          98 SRFEG-----RILNIHPSLLPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVD  144 (200)
T ss_pred             HHHHC-----CEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf             97326-----517417531358999459999998499734757999756777


No 450
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283   This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=23.50  E-value=44  Score=13.12  Aligned_cols=63  Identities=13%  Similarity=0.105  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCE-EEEECCCCCCCHHHHHHHHHH
Q ss_conf             888888887531004675279733006857999999999871989-999578876767899999999
Q gi|254780673|r  349 GMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRL-VTVEEGYPQSSVGSTIANQVQ  414 (467)
Q Consensus       349 ~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~-i~vee~~~~gg~g~~i~~~i~  414 (467)
                      |..-..-.|.+.++.||-+-+|.+=.+   +.+++..-=++=-.- |+-+=-.++-|-..||+..|+
T Consensus       158 ~iGFTkALA~E~A~kGvTVN~i~PGYi---~T~MV~A~redVl~~rIva~IP~~RLg~PeEIA~aV~  221 (244)
T TIGR01829       158 MIGFTKALAQEGARKGVTVNVIAPGYI---ATDMVMAVREDVLQSRIVAQIPVKRLGRPEEIAAAVA  221 (244)
T ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCC---CCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             567779999721103856754558898---8667786368887405778898321578157888998


No 451
>COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only]
Probab=23.37  E-value=29  Score=14.39  Aligned_cols=35  Identities=20%  Similarity=0.347  Sum_probs=16.2

Q ss_pred             CCCEEEEEECCHHCCCHHHHHHH-CCCCEEEECCCC
Q ss_conf             03138665221000105556541-378347640212
Q gi|254780673|r  277 PGLKVVIPYTASDAKGLLKAAIR-DPNPVIFLENEI  311 (467)
Q Consensus       277 Pgl~V~~P~~~~d~~~ll~~ai~-~~~Pvi~le~~~  311 (467)
                      +-|+-++|+...+...-=..+.+ .-+-|+|+|+..
T Consensus        69 ~~l~~ivp~~~f~~t~~ki~~f~ag~GtVLFfeDq~  104 (200)
T COG3560          69 DELRAIVPAEAFEATERKIDSFKAGYGTVLFFEDQN  104 (200)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHCCCEEEEEECCH
T ss_conf             999974566556631034420331564389971643


No 452
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=23.29  E-value=45  Score=13.01  Aligned_cols=61  Identities=15%  Similarity=0.279  Sum_probs=39.3

Q ss_pred             EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf             44316874586025788888888753100467527973300685799999999987198999957
Q gi|254780673|r  334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEE  398 (467)
Q Consensus       334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~vee  398 (467)
                      ....|.-|.|-+  ..+..+...++.|.+.||...|+|.+  ..-.+..|+.-..+-|.+-+...
T Consensus       436 ~~~~gqPvLvGT--~SVe~SE~ls~~L~~~gi~h~vLNAk--~~~~EA~IIa~AG~~GaVTIATN  496 (823)
T PRK12906        436 RHAKGQPVLVGT--VSIESSERLSQLLDKAGIPHAVLNAK--NHAKEAEIIAQAGQRGAVTIATN  496 (823)
T ss_pred             HHHCCCCEEEEE--CCHHHHHHHHHHHHHCCCCHHHHCCC--CHHHHHHHHHHCCCCCEEEEECC
T ss_conf             986799889971--75899999999999768703530687--75789999983489993897065


No 453
>pfam10740 DUF2529 Protein of unknown function (DUF2529). This family is conserved in the Bacillales. The function is not known. Several members are annotated as being YWJG, a protein expressed downstream of pyrG, a gene encoding for cytidine triphosphate synthetase.
Probab=23.22  E-value=46  Score=13.00  Aligned_cols=83  Identities=16%  Similarity=-0.006  Sum_probs=50.7

Q ss_pred             EECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH--HHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             431687458602578888888875310046752797330068579999--999998719899995788767678999999
Q gi|254780673|r  335 HRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQT--IFESVKKTGRLVTVEEGYPQSSVGSTIANQ  412 (467)
Q Consensus       335 ~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~--i~~sv~kt~~~i~vee~~~~gg~g~~i~~~  412 (467)
                      +.+-+-+.+++-.+.-.++.+.+++|..+||+.-.|....=+.-++..  ..-.--|+.|=++=.|+...-|+=+-+++.
T Consensus        79 ~t~tDRVLlfs~~~~d~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~vhId~~l~~~LvP~EdG~Rig~P~~ma~l  158 (172)
T pfam10740        79 ITETDRVLLFSRFSNDEEAVALAKKLYDQGIDVVAVSPNAKEGDSLADHADVHIDLKLKRPLVPDEDGTRIGFPSLMAAL  158 (172)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCEEECCHHHHHH
T ss_conf             77557699976999978999999999986998899816888887614440266764778786618889873071799999


Q ss_pred             HHHHH
Q ss_conf             99967
Q gi|254780673|r  413 VQRKV  417 (467)
Q Consensus       413 i~e~~  417 (467)
                      -.=++
T Consensus       159 y~Y~~  163 (172)
T pfam10740       159 YVYHA  163 (172)
T ss_pred             HHHHH
T ss_conf             99999


No 454
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=23.21  E-value=46  Score=13.00  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             578888888875310046752797330
Q gi|254780673|r  347 GIGMTYATKAAIELEKNGIDAELIDLR  373 (467)
Q Consensus       347 G~~~~~a~~aa~~L~~~gi~~~vid~r  373 (467)
                      -.....|++|++.|   |.+.-=||+-
T Consensus       227 ~e~~~la~~a~~~l---gl~~~GVDii  250 (300)
T PRK10446        227 PQEREIAIKAARTM---ALDVAGVDIL  250 (300)
T ss_pred             HHHHHHHHHHHHHH---CCCEEEEEEE
T ss_conf             99999999999986---9968999998


No 455
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.20  E-value=46  Score=13.00  Aligned_cols=48  Identities=21%  Similarity=0.377  Sum_probs=35.3

Q ss_pred             CCEEEEHHHHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf             745860257888888-887531004675279733006857999999999
Q gi|254780673|r  340 DVTIISFGIGMTYAT-KAAIELEKNGIDAELIDLRTIRPMDWQTIFESV  387 (467)
Q Consensus       340 ditii~~G~~~~~a~-~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv  387 (467)
                      ++-++-.|..+...+ +..+.+...||-++|||+..--.+|-+.+++..
T Consensus        48 ~~DvvLlGPQv~y~~~~~~~~~~~~giPV~vI~~~dYG~mnG~kvL~~a   96 (102)
T COG1440          48 NADVVLLGPQVRYMLKQLKEAAEEKGIPVEVIDMLDYGMMNGEKVLEQA   96 (102)
T ss_pred             CCCEEEECHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCHHHHHHH
T ss_conf             0898998728998899999984315997678578991576849999999


No 456
>PRK06940 short chain dehydrogenase; Provisional
Probab=23.05  E-value=46  Score=12.98  Aligned_cols=28  Identities=18%  Similarity=0.159  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             7888888887531004675279733006
Q gi|254780673|r  348 IGMTYATKAAIELEKNGIDAELIDLRTI  375 (467)
Q Consensus       348 ~~~~~a~~aa~~L~~~gi~~~vid~r~l  375 (467)
                      .........|..|...||.+--|..-++
T Consensus       178 a~~~ltk~lA~e~a~~gIRVN~V~PG~i  205 (277)
T PRK06940        178 ANVLRVRAAAVKWGARGARINSISPGII  205 (277)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEECCE
T ss_conf             9999999999999864965778755767


No 457
>cd00948 FBP_aldolase_I_a Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). This family includes proteins found in vertebrates, plants, and bacterial plant pathogens. Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=22.94  E-value=46  Score=12.97  Aligned_cols=27  Identities=33%  Similarity=0.397  Sum_probs=13.8

Q ss_pred             CHHHHHHHHHHHH-------HCCCCCHHH---HHHHH
Q ss_conf             6278998999988-------718864456---66667
Q gi|254780673|r  195 TEHGFAGIGIGAS-------FAGLKPIVE---FMTFN  221 (467)
Q Consensus       195 ~E~~~~G~a~G~A-------~~G~~Piv~---~~~~~  221 (467)
                      |+.++.--|-+||       -+|+-||||   .|..|
T Consensus       147 S~~~I~~Na~~LArYA~icQ~~glVPIVEPEVLmdG~  183 (330)
T cd00948         147 SELAIKENAHGLARYAAICQENGLVPIVEPEVLMDGD  183 (330)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             6999999899999999999985981321501001676


No 458
>PRK13685 hypothetical protein; Provisional
Probab=22.83  E-value=46  Score=12.95  Aligned_cols=46  Identities=22%  Similarity=0.215  Sum_probs=29.3

Q ss_pred             HHHHHHHHHCCCCCEEEEECC------------CCCCCCHHHHHHHHHHCCCE-EEEEC
Q ss_conf             888875310046752797330------------06857999999999871989-99957
Q gi|254780673|r  353 ATKAAIELEKNGIDAELIDLR------------TIRPMDWQTIFESVKKTGRL-VTVEE  398 (467)
Q Consensus       353 a~~aa~~L~~~gi~~~vid~r------------~l~Pld~~~i~~sv~kt~~~-i~vee  398 (467)
                      +++||+..+++||.+-.|-+-            ...|+|++++.+..+.||-- ....+
T Consensus       217 ~~~AA~~A~~~gi~IyTIgvGt~~g~~~~~g~~~~~~lDe~~L~~IA~~TGG~yfrA~d  275 (326)
T PRK13685        217 AYTAARTAKDQGVPISTISFGTPYGFVEINGQRQPVPVDDETLKKIAQLSGGEFYTAAS  275 (326)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCC
T ss_conf             99999999985994899997799884354784034568999999999972987997199


No 459
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=22.80  E-value=46  Score=12.95  Aligned_cols=48  Identities=17%  Similarity=0.347  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC-CCEECCCCC
Q ss_conf             122355443113650699932434458866532364754081-110116666
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGC-ERVIDTPIT  195 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~-~R~~d~pi~  195 (467)
                      |+..++...++....+ +...++  |||.+..-..++.+||= -+++|.--.
T Consensus        91 Ais~~ll~ll~~Gdhi-v~~~~~--YggT~~l~~~~l~~~Gi~v~~vD~~d~  139 (431)
T PRK08248         91 AVTYSILNIASAGDEI-VSSSSL--YGGTYNLFAHTLPKLGITVKFVDPSDP  139 (431)
T ss_pred             HHHHHHHHHHCCCCEE-EECCCC--CCCHHHHHHHHHHCCCEEEEEECCCCH
T ss_conf             9999999973779989-972786--488899987423238879999899775


No 460
>pfam11793 FANCL_C FANCL C-terminal domain. This domain is found at the C-terminus of the Fancl protein in humans which is the putative E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nuclear complex which is required for mono-ubiquitination of a downstream FA protein, FANCD2.
Probab=22.79  E-value=44  Score=13.15  Aligned_cols=21  Identities=14%  Similarity=0.360  Sum_probs=17.8

Q ss_pred             CHHHHHHHHHHHHHHCCCEEE
Q ss_conf             444332168876322031386
Q gi|254780673|r  262 AAQHSQCYAAWYSHVPGLKVV  282 (467)
Q Consensus       262 g~~Hs~~~~~~~~~iPgl~V~  282 (467)
                      -++|+..+.-||+++|+.+..
T Consensus        30 ~~FH~~CL~eWl~slp~sr~s   50 (70)
T pfam11793        30 LPFHIACLYEWLRTLRDSRQS   50 (70)
T ss_pred             CHHHHHHHHHHHHHCCCCEEE
T ss_conf             687999999999848640067


No 461
>PRK07608 hypothetical protein; Provisional
Probab=22.79  E-value=46  Score=12.95  Aligned_cols=41  Identities=15%  Similarity=0.140  Sum_probs=18.5

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHCCCEEEEEC----CCCCCCHHHHHH
Q ss_conf             7973300685799999999987198999957----887676789999
Q gi|254780673|r  368 ELIDLRTIRPMDWQTIFESVKKTGRLVTVEE----GYPQSSVGSTIA  410 (467)
Q Consensus       368 ~vid~r~l~Pld~~~i~~sv~kt~~~i~vee----~~~~gg~g~~i~  410 (467)
                      ++++-+...|+........  ..+|++.+=|    ..+.+|-|.-.+
T Consensus       260 ~~~~~~~~~~l~~~~a~~~--~~~rv~LiGDAAH~~~P~~GQG~N~g  304 (389)
T PRK07608        260 RCVTPAAGFPLALQRVDRL--VAPRVALVGDAAHLIHPLAGQGMNLG  304 (389)
T ss_pred             EEECCCCCCCHHHHHHHHH--HCCCEEEECCHHCCCCCCCCCCHHHH
T ss_conf             5642443440765525664--12652565140205796403338688


No 462
>pfam01333 Apocytochr_F_C Apocytochrome F, C-terminal. This is a sub-family of cytochrome C. See pfam00034.
Probab=22.69  E-value=47  Score=12.93  Aligned_cols=16  Identities=19%  Similarity=0.214  Sum_probs=10.2

Q ss_pred             EECCCCCEEEEEEECC
Q ss_conf             3177786898998237
Q gi|254780673|r   48 VESIDEGILGKILCPN   63 (467)
Q Consensus        48 V~A~~~G~i~~ilv~e   63 (467)
                      +.|+.+|+|.+|...+
T Consensus         5 ~~as~~G~I~~I~~~e   20 (118)
T pfam01333         5 YNASAAGTITKITRNE   20 (118)
T ss_pred             EECCCCEEEEEEEECC
T ss_conf             7166770899977567


No 463
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=22.65  E-value=47  Score=12.93  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=22.6

Q ss_pred             CEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEC--CCCCCCCHH
Q ss_conf             45860257888888887531004675279733--006857999
Q gi|254780673|r  341 VTIISFGIGMTYATKAAIELEKNGIDAELIDL--RTIRPMDWQ  381 (467)
Q Consensus       341 itii~~G~~~~~a~~aa~~L~~~gi~~~vid~--r~l~Pld~~  381 (467)
                      ++||+-|.   .++|.|..|.+.|.++++|+.  |.+..+|.+
T Consensus         2 v~iiGgG~---ig~E~A~~l~~~G~~Vtiie~~~~~l~~~d~~   41 (82)
T pfam00070         2 VVVVGGGY---IGLEFASALAKLGSKVTVVERRDRLLRGFDEE   41 (82)
T ss_pred             EEEECCCH---HHHHHHHHHHHCCCEEEEECCCCCCCHHCCHH
T ss_conf             99999889---99999999986392789981257330227988


No 464
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=22.52  E-value=47  Score=12.91  Aligned_cols=26  Identities=15%  Similarity=0.115  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             78888888875310046752797330
Q gi|254780673|r  348 IGMTYATKAAIELEKNGIDAELIDLR  373 (467)
Q Consensus       348 ~~~~~a~~aa~~L~~~gi~~~vid~r  373 (467)
                      .+-..+..||+.|.+.|+...|.|+.
T Consensus        80 ~~G~rS~~Aa~~L~~~G~~~~V~~l~  105 (122)
T cd01526          80 RRGNDSQTAVRKLKELGLERFVRDII  105 (122)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEECC
T ss_conf             99965999999999819986478764


No 465
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer.  2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=22.51  E-value=37  Score=13.60  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=25.1

Q ss_pred             CCEEEEHHH-HHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             745860257-88888888753100467527973300
Q gi|254780673|r  340 DVTIISFGI-GMTYATKAAIELEKNGIDAELIDLRT  374 (467)
Q Consensus       340 ditii~~G~-~~~~a~~aa~~L~~~gi~~~vid~r~  374 (467)
                      |+.||++|. +.....+..+.|.+.||.+|+-|-..
T Consensus        54 eilliGtG~~~~~~~~~~~~~l~~~gI~~E~M~T~a   89 (109)
T cd00248          54 DILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGA   89 (109)
T ss_pred             CEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECHHH
T ss_conf             489986589777899999999998799499967099


No 466
>pfam02196 RBD Raf-like Ras-binding domain.
Probab=22.46  E-value=30  Score=14.25  Aligned_cols=48  Identities=25%  Similarity=0.398  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCC---CCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             25788888888753100467527973300---68579999999998719899995
Q gi|254780673|r  346 FGIGMTYATKAAIELEKNGIDAELIDLRT---IRPMDWQTIFESVKKTGRLVTVE  397 (467)
Q Consensus       346 ~G~~~~~a~~aa~~L~~~gi~~~vid~r~---l~Pld~~~i~~sv~kt~~~i~ve  397 (467)
                      -|-.+.+++.-  .+++.|++.+-.+++.   -+|+||++-..++.  ++=+.+|
T Consensus        19 pG~tird~L~~--~l~~rgL~~~~~~v~~~g~~k~l~~d~d~s~L~--~~El~vE   69 (71)
T pfam02196        19 PGMSVRDALSK--ALKRRGLNPSECVVRRSGEKKPLDLDTDISSLP--GEELVVE   69 (71)
T ss_pred             CCCCHHHHHHH--HHHHCCCCHHHEEEEECCCCCCCCCCCCCCCCC--CCEEEEE
T ss_conf             99789999999--999849998998999058984221566224001--8789999


No 467
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=22.33  E-value=47  Score=12.89  Aligned_cols=66  Identities=14%  Similarity=0.178  Sum_probs=33.6

Q ss_pred             CCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCHHHHHHHHHH--CCCEE--EEECCCCC-CCHHHHHH
Q ss_conf             16874586025788888888753100467527973300685-799999999987--19899--99578876-76789999
Q gi|254780673|r  337 QGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRP-MDWQTIFESVKK--TGRLV--TVEEGYPQ-SSVGSTIA  410 (467)
Q Consensus       337 ~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~P-ld~~~i~~sv~k--t~~~i--~vee~~~~-gg~g~~i~  410 (467)
                      ++..|.|++.|.+.+.---     .+.|         .|+| ||.. +++.+..  ...|.  +.+|-... |.=|.||.
T Consensus       169 ~d~RV~vigsGGLSH~~~~-----p~~g---------~in~~~D~~-~ld~l~~gd~~~l~~~~~~e~~~~aG~gg~Ei~  233 (269)
T PRK13358        169 DDERVVVVGTGGLSHWINT-----PRHG---------EVNEAFDHR-VMGALCSGDLAALQAMGDEYILDNGGNGGLEIV  233 (269)
T ss_pred             CCCCEEEEECCCCCCCCCC-----CCCC---------CCCHHHHHH-HHHHHHHCCHHHHHCCCHHHHHHHCCCCCHHHH
T ss_conf             8871899957875568898-----6667---------579999999-999997099999861799999987588409999


Q ss_pred             HHHHHHH
Q ss_conf             9999967
Q gi|254780673|r  411 NQVQRKV  417 (467)
Q Consensus       411 ~~i~e~~  417 (467)
                      .||.-.+
T Consensus       234 ~Wi~a~g  240 (269)
T PRK13358        234 NWIMAAA  240 (269)
T ss_pred             HHHHHHH
T ss_conf             9999998


No 468
>PRK11678 putative chaperone; Provisional
Probab=22.30  E-value=47  Score=12.88  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=12.6

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             667656089989999999998502
Q gi|254780673|r  439 ANLEKLALPNVDEIIESVESICYK  462 (467)
Q Consensus       439 ~~le~~~~p~~~~I~~av~~v~~~  462 (467)
                      ..+|...-|..++|.+.+++++.+
T Consensus       372 ~~fe~~i~~~l~r~~~~~~~~L~~  395 (450)
T PRK11678        372 QGLEEAISQPLARILELVQLALDQ  395 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999997


No 469
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=22.17  E-value=48  Score=12.87  Aligned_cols=46  Identities=17%  Similarity=0.301  Sum_probs=22.9

Q ss_pred             CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHH-----HCCCCEEEECC
Q ss_conf             788879983024457644443321688763220313866522100010555654-----13783476402
Q gi|254780673|r  245 ITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAI-----RDPNPVIFLEN  309 (467)
Q Consensus       245 ~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai-----~~~~Pvi~le~  309 (467)
                      +..|++++...|++++                 ||+++.  ++.|+...+..+-     ...++.+|+|.
T Consensus       151 iGyPvliKAa~GGGGr-----------------Gmriv~--~~~el~~~~~~~~~eA~~~Fg~~~v~iEk  201 (449)
T PRK06111        151 IGYPVMLKASAGGGGI-----------------GMQLVE--TEQELTKAFESNKKRAANFFGNGEMYLEK  201 (449)
T ss_pred             CCCCEEEEECCCCCCC-----------------CEEEEC--CHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             5980266203589867-----------------208957--99999999999999999863996025544


No 470
>pfam06418 CTP_synth_N CTP synthase N-terminus. This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyses the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position.
Probab=22.17  E-value=48  Score=12.87  Aligned_cols=48  Identities=17%  Similarity=0.217  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC----CCEEEEECC
Q ss_conf             888887531004675279733006857999999999871----989999578
Q gi|254780673|r  352 YATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKT----GRLVTVEEG  399 (467)
Q Consensus       352 ~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt----~~~i~vee~  399 (467)
                      -.....+.|..-||.+++|-+|+=+|++.+...+...-|    .+++.+.+-
T Consensus       189 PTQhSVkeLrs~GIqPDilvcRse~~l~~~~k~KIslfcnV~~~~VI~~~Dv  240 (275)
T pfam06418       189 PTQHSVKELRSIGIQPDILVCRSEKPLDEETKEKIALFCNVPKEAVISAPDV  240 (275)
T ss_pred             CHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEECCC
T ss_conf             3288899999648998758870678999999999987639986678984684


No 471
>PRK07671 cystathionine beta-lyase; Provisional
Probab=22.14  E-value=48  Score=12.86  Aligned_cols=45  Identities=31%  Similarity=0.598  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCC-CEECCC
Q ss_conf             1223554431136506999324344588665323647540811-101166
Q gi|254780673|r  145 ALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCE-RVIDTP  193 (467)
Q Consensus       145 a~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~-R~~d~p  193 (467)
                      |+...+ ..++.. +-++...++  |||.+..-..++.+||=+ +++|..
T Consensus        77 Ai~a~l-~~~~~G-d~iv~~~~~--YggT~~l~~~~l~~~Gi~v~fvd~~  122 (377)
T PRK07671         77 AITAVM-MLFSSG-DHVILTDDV--YGGTYRVMTKVLNRFGIEHTFVDTT  122 (377)
T ss_pred             HHHHHH-HHHCCC-CEEEECCCC--CCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf             999999-986899-989982898--2778999998886369769994388


No 472
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit; InterPro: IPR012756   DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel.   RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise:  RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors.  RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs.  Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits.   The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=22.12  E-value=28  Score=14.49  Aligned_cols=17  Identities=35%  Similarity=0.677  Sum_probs=6.0

Q ss_pred             EEEECCCCCEECCCCEE
Q ss_conf             87741789762589859
Q gi|254780673|r   20 AKWKKNEGDLIKQGDII   36 (467)
Q Consensus        20 ~~W~vk~GD~V~~gd~l   36 (467)
                      ++..++.||.|..|++|
T Consensus       860 T~L~v~dgd~i~pG~V~  876 (1252)
T TIGR02388       860 TSLLVKDGDLIKPGAVV  876 (1252)
T ss_pred             EEEEECCCCEECCCCEE
T ss_conf             57884168761677558


No 473
>pfam12588 PSDC Phophatidylserine decarboxylase. This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam02666. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=22.10  E-value=48  Score=12.86  Aligned_cols=41  Identities=17%  Similarity=0.281  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCE--EEEEECCCCCCC
Q ss_conf             78999999999878867421177678887--998302445764
Q gi|254780673|r  221 NFAMQAIDQIINSAAKTRYMSGGQITTSI--VFRGPNGAAARV  261 (467)
Q Consensus       221 ~f~~~a~dqi~n~~ak~~~~~gg~~~~p~--v~r~p~G~~~~~  261 (467)
                      +=+++.+|.|+..|-.+.---.|...+|+  ++--|+|.-.|+
T Consensus        47 ~~mL~~ln~i~t~AP~~~~~~~glVG~P~nalldwpM~T~sG~   89 (140)
T pfam12588        47 DELLQLLNHILTTAPEWNDHPSGLVGFPINALLDWPMGTPSGY   89 (140)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHH
T ss_conf             9999999999731999777888740367176420335776789


No 474
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase; InterPro: IPR013447    Proteins in this entry match the enzyme RhaD, rhamnulose-1-phosphate aldolase (4.1.2.19 from EC).; GO: 0008994 rhamnulose-1-phosphate aldolase activity.
Probab=22.09  E-value=48  Score=12.85  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=0.0

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCC
Q ss_conf             2235544311365069993243445886653236475408
Q gi|254780673|r  146 LRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFG  185 (467)
Q Consensus       146 ~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg  185 (467)
                      |.++-+|.|+.+.=|      |.++.|+|+.-.-|-+-||
T Consensus       193 IG~~TAekM~e~rLv------~WP~HGifGaG~~lDe~FG  226 (273)
T TIGR02624       193 IGEATAEKMKEYRLV------LWPHHGIFGAGPSLDETFG  226 (273)
T ss_pred             HHHHHHHHHHHCCEE------EECCCCEECCCCCHHHHCC
T ss_conf             678999987318788------8448773037876334406


No 475
>PRK08462 biotin carboxylase; Validated
Probab=21.99  E-value=48  Score=12.84  Aligned_cols=76  Identities=24%  Similarity=0.397  Sum_probs=0.0

Q ss_pred             CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHCCCHHHHHHH-----CCCCEEEECCCCCCCCCCC
Q ss_conf             67888799830244576444433216887632203138665221000105556541-----3783476402123333345
Q gi|254780673|r  244 QITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR-----DPNPVIFLENEILYGSSFE  318 (467)
Q Consensus       244 ~~~~p~v~r~p~G~~~~~g~~Hs~~~~~~~~~iPgl~V~~P~~~~d~~~ll~~ai~-----~~~Pvi~le~~~ly~~~~~  318 (467)
                      .+.-||+++...|+|++                 ||+|+.  +..|++..+..+-+     ..++-+|+|.-+.-.+..+
T Consensus       152 ~iGyPV~lKas~GGGGr-----------------Gmriv~--~~~el~~~~~~a~~ea~~~fg~~~v~vEk~i~~~rHIE  212 (446)
T PRK08462        152 EIGYPVILKAAAGGGGR-----------------GMRVVE--DESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIE  212 (446)
T ss_pred             HHCCCEEEEECCCCCCC-----------------EEEEEC--CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEE
T ss_conf             72995687632789987-----------------428957--67999999999987788605888669998503550789


Q ss_pred             CCCCCCEECCCCCEEEEECCC-CCEE
Q ss_conf             334663121443114443168-7458
Q gi|254780673|r  319 VPMVDDLVIPIGRARIHRQGS-DVTI  343 (467)
Q Consensus       319 ~p~~~~~~~p~Gk~~i~~~G~-diti  343 (467)
                      +.-..|     +.++++.-|+ |++|
T Consensus       213 vQvl~D-----~~Gn~ihl~eRdCSi  233 (446)
T PRK08462        213 VQILGD-----KHGNVIHVGERDCSM  233 (446)
T ss_pred             EEEEEC-----CCCCEEEEECCCCCC
T ss_conf             998852-----899888853212366


No 476
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=21.94  E-value=48  Score=12.83  Aligned_cols=56  Identities=16%  Similarity=0.254  Sum_probs=0.0

Q ss_pred             EEECCCCCEE--EEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             4431687458--602578888888875310046752797330068579999999998719899995
Q gi|254780673|r  334 IHRQGSDVTI--ISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVE  397 (467)
Q Consensus       334 i~~~G~diti--i~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~ve  397 (467)
                      +++.|+.+-+  -.||.+....   .+.+.+-||.+..+|+.     |.+.+.+.+++--|+|.+|
T Consensus        95 ll~~GDhiv~~~~~YGgT~~l~---~~~~~~~gi~~~~vd~~-----d~~~~~~~i~~~Tklv~~E  152 (405)
T PRK08776         95 LLQPGDTLVVPHDAYGGSWRLF---NALAKKGHFALITADLT-----DPRSLADALAQSPKLVLIE  152 (405)
T ss_pred             HHCCCCEEEECCCCCHHHHHHH---HHHHHHCCEEEEEECCC-----CHHHHHHHCCCCCEEEEEE
T ss_conf             7389998998688611799999---99875488899996899-----9899997437776599998


No 477
>PRK01506 consensus
Probab=21.82  E-value=49  Score=12.82  Aligned_cols=148  Identities=19%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             CCCCCCCCEECCCCCEEEEECC-CCCEEEEHH-HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCC-E
Q ss_conf             4533466312144311444316-874586025-788888888753100467527973300685799999999987198-9
Q gi|254780673|r  317 FEVPMVDDLVIPIGRARIHRQG-SDVTIISFG-IGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGR-L  393 (467)
Q Consensus       317 ~~~p~~~~~~~p~Gk~~i~~~G-~ditii~~G-~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~-~  393 (467)
                      |++|-.+-+..|+-...+..++ ++..|++-- ..+.+|...++.|   |....+++-|-.+|=..+.....-.=-|| +
T Consensus       144 F~ip~~~l~~~~~l~~~~~~~~~~~~vVVsPD~Ga~kra~~~a~~L---~~~~~~~~K~R~~~~~v~~~~~~gdV~Gr~v  220 (317)
T PRK01506        144 FDIPIDHLMGVPILSDYFETKGLKDIVIVSPDHGGVTRARKMADRL---KAPIAIIDKRRPRPNVAEVMNIIGNIEGKTA  220 (317)
T ss_pred             CCCCCCEEEECHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHC---CCCEEEEEEECCCCCEEEEECCCCCCCCCEE
T ss_conf             6998431585088888998548877489904924899999999972---9966889864179980463024565579627


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHH------------------HHHCCCCCEEECCCC-CCCCCCHHHHHHCCCCHHHHH-
Q ss_conf             999578876767899999999967------------------764289829971777-888889667656089989999-
Q gi|254780673|r  394 VTVEEGYPQSSVGSTIANQVQRKV------------------FDYLDAPILTITGRD-VPMPYAANLEKLALPNVDEII-  453 (467)
Q Consensus       394 i~vee~~~~gg~g~~i~~~i~e~~------------------f~~L~~p~~ri~~~d-~p~P~~~~le~~~~p~~~~I~-  453 (467)
                      |+||+=..+||-=...+..+.+++                  -..-++++.+|-.-| +|.|-....+|....+...++ 
T Consensus       221 IIVDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~TnTip~p~~~~~~kl~vlsva~llA  300 (317)
T PRK01506        221 ILIDDIIDTAGTITLAANALVENGASEVYACCTHPVLSGPAIERIQNSKIKELVVTNSIVLPEEKKIDKVHELSVAPLIA  300 (317)
T ss_pred             EEECCHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHCCCCCEEEEHHHHHH
T ss_conf             87513221350599999999865997589999770068179999861899889993884486123379839988499999


Q ss_pred             HHHHHHHCCCCCCC
Q ss_conf             99999850200269
Q gi|254780673|r  454 ESVESICYKRKAKS  467 (467)
Q Consensus       454 ~av~~v~~~~~~~~  467 (467)
                      ++++++....-.++
T Consensus       301 eaI~ri~~~~Sis~  314 (317)
T PRK01506        301 EAIIRVYEEESVSV  314 (317)
T ss_pred             HHHHHHHCCCCHHH
T ss_conf             99999867997688


No 478
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=21.81  E-value=49  Score=12.82  Aligned_cols=34  Identities=29%  Similarity=0.494  Sum_probs=0.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCC
Q ss_conf             00000000000122355443-11365069993243
Q gi|254780673|r  134 HAPTSSITVREALRDAIAEE-MRRDKDVFIMGEEV  167 (467)
Q Consensus       134 ~~~~~~~TvRea~~~a~~e~-m~~d~~~~~~gedv  167 (467)
                      .+|......||++..+|+-. ...+.++|++|+.|
T Consensus         8 ~aP~gs~~~rE~LD~aLa~aaf~q~vsv~F~~dGV   42 (116)
T TIGR03010         8 QAPHGTASGREGLDALLAASAFDEDIGVFFIDDGV   42 (116)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf             79998778999999999998707974799952449


No 479
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=21.63  E-value=49  Score=12.79  Aligned_cols=56  Identities=21%  Similarity=0.352  Sum_probs=0.0

Q ss_pred             EEECCCCCEE--EEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             4431687458--602578888888875310046752797330068579999999998719899995
Q gi|254780673|r  334 IHRQGSDVTI--ISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVE  397 (467)
Q Consensus       334 i~~~G~diti--i~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~ve  397 (467)
                      +++.|+.|-.  -.||.+.....+-...+   ||.++.+|     |-|.+.+.+.+++.-++|.+|
T Consensus        96 ~l~~Gd~iv~~~~~Yggt~~l~~~~l~~~---Gi~~~~vd-----~~d~~~~~~ai~~~T~lv~~E  153 (391)
T PRK08133         96 LLQAGDHVVSSRSLFGSTLSLFEKIFARF---GIETTFVD-----LTDLDAWRAAVRPNTKLFFLE  153 (391)
T ss_pred             HCCCCCEEEECCCCCCCHHHHHHHHHHCC---CEEEEECC-----CCCHHHHHHHCCCCCEEEEEE
T ss_conf             45799989967897453899999874107---84444679-----879999997458784599997


No 480
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=21.61  E-value=49  Score=12.79  Aligned_cols=38  Identities=29%  Similarity=0.610  Sum_probs=0.0

Q ss_pred             CCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECC--CCCCCC
Q ss_conf             87458602578888888875310046752797330--068579
Q gi|254780673|r  339 SDVTIISFGIGMTYATKAAIELEKNGIDAELIDLR--TIRPMD  379 (467)
Q Consensus       339 ~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r--~l~Pld  379 (467)
                      .||.||+-|.   .-+-+|-.|.+.|+++.|||-+  .++|++
T Consensus         3 ~DV~IvGaGp---vGl~lAl~L~~~G~~v~lie~~~~~~~~~~   42 (405)
T PRK05714          3 ADLLIVGAGM---VGSALALALEGSGLEVLLVDGGPLSVKPFD   42 (405)
T ss_pred             CCEEEECCCH---HHHHHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf             8899999059---999999999618997899958997778776


No 481
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=21.45  E-value=49  Score=12.77  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC----------CHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             57888888887531004675279733006857----------99999999987198999957887676789999999996
Q gi|254780673|r  347 GIGMTYATKAAIELEKNGIDAELIDLRTIRPM----------DWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRK  416 (467)
Q Consensus       347 G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pl----------d~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~  416 (467)
                      +.+...+..+++.|.+.|++++.||++-+-|-          +.....+.+...--+|+.---++ +++..-+     ++
T Consensus        14 SrT~~L~~~v~~~L~~~g~ev~~i~l~dl~~~~ll~~~~~~p~v~~~~~~V~~AD~lIVaTPVYk-aSysGlL-----K~   87 (191)
T PRK10569         14 SRSSVLLEYAREWLQGLDVEVYHWNLQDFAAEDLLYARFDSPAVKTFTEQLQQADGLIVATPVYK-ASFSGAL-----KT   87 (191)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCEEEEECCEEC-CCCCHHH-----HH
T ss_conf             74999999999999866985899863316806540167899899999999985897999676013-6452899-----99


Q ss_pred             HHHHCC
Q ss_conf             776428
Q gi|254780673|r  417 VFDYLD  422 (467)
Q Consensus       417 ~f~~L~  422 (467)
                      .||+|+
T Consensus        88 flDll~   93 (191)
T PRK10569         88 LLDLLP   93 (191)
T ss_pred             HHHHCC
T ss_conf             998569


No 482
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.36  E-value=50  Score=12.75  Aligned_cols=66  Identities=12%  Similarity=0.209  Sum_probs=0.0

Q ss_pred             EEECCCCCEEEE--HHHHHHHHHHHHHHHHCCCCCEEEEEC-------------------------CCCCCCCHHHHHHH
Q ss_conf             443168745860--257888888887531004675279733-------------------------00685799999999
Q gi|254780673|r  334 IHRQGSDVTIIS--FGIGMTYATKAAIELEKNGIDAELIDL-------------------------RTIRPMDWQTIFES  386 (467)
Q Consensus       334 i~~~G~ditii~--~G~~~~~a~~aa~~L~~~gi~~~vid~-------------------------r~l~Pld~~~i~~s  386 (467)
                      +++.|+.+.+..  ||.+.....+....+   ||.++.+|.                         -++.=.|.+.|.+.
T Consensus       104 ll~~Gdhiv~~~~lYggT~~l~~~~l~~~---GI~~~fvd~~~d~~~~~~~i~~~Tklv~~EtpsNP~l~v~Di~~ia~i  180 (437)
T PRK05613        104 LAGAGDHIVTSPRLYGGTETLFLVTLNRL---GIETTFVENPDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEV  180 (437)
T ss_pred             HHCCCCEEEECCCCCCCHHHHHHHHHHHC---CCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             72889989978987634789977677516---815899479999999997378785599998799986533579999999


Q ss_pred             HHHCCCEEEEECCCCC
Q ss_conf             9871989999578876
Q gi|254780673|r  387 VKKTGRLVTVEEGYPQ  402 (467)
Q Consensus       387 v~kt~~~i~vee~~~~  402 (467)
                      +++.+-+++||..|-+
T Consensus       181 A~~~g~~~vVDNTfat  196 (437)
T PRK05613        181 AHRNQVPLIIDNTIAT  196 (437)
T ss_pred             HHHCCCEEEECCCCCC
T ss_conf             9876983995166520


No 483
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=21.28  E-value=50  Score=12.74  Aligned_cols=29  Identities=34%  Similarity=0.520  Sum_probs=0.0

Q ss_pred             CCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             74586025788888888753100467527973
Q gi|254780673|r  340 DVTIISFGIGMTYATKAAIELEKNGIDAELID  371 (467)
Q Consensus       340 ditii~~G~~~~~a~~aa~~L~~~gi~~~vid  371 (467)
                      ||.||+.|.   .-+-+|-.|.+.|+++.|||
T Consensus        19 DV~IVGaGp---~Gl~lAl~La~~Gi~v~viE   47 (413)
T PRK07364         19 DVVIVGGGI---VGLTLAAALKDSGLRIALIE   47 (413)
T ss_pred             CEEEECCCH---HHHHHHHHHHHCCCCEEEEE
T ss_conf             989999279---99999999986899889991


No 484
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=21.25  E-value=50  Score=12.74  Aligned_cols=43  Identities=23%  Similarity=0.207  Sum_probs=0.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHH
Q ss_conf             76789999999996776428982997177788888966765608998999
Q gi|254780673|r  403 SSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAANLEKLALPNVDEI  452 (467)
Q Consensus       403 gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~~le~~~~p~~~~I  452 (467)
                      ||+|++++..+..-+       +.++..-|--.=.-.+|-++++.+.++|
T Consensus        10 GglG~~~~~~La~~G-------vg~i~lvD~D~ve~sNL~Rq~l~~~~di   52 (134)
T pfam00899        10 GGLGSPAAEYLARAG-------VGKLTLVDFDTVELSNLNRQILFTESDI   52 (134)
T ss_pred             CHHHHHHHHHHHHHC-------CCEEEEEECCCCCCCCCCCEEECCHHHC
T ss_conf             889999999999938-------9749999895676322272242336466


No 485
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=21.08  E-value=50  Score=12.72  Aligned_cols=64  Identities=14%  Similarity=0.264  Sum_probs=0.0

Q ss_pred             HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCC--CCCCCCHHHHHHCCCCHHHHHHH
Q ss_conf             9999871989999578876767899999999967764289829971777--88888966765608998999999
Q gi|254780673|r  384 FESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRD--VPMPYAANLEKLALPNVDEIIES  455 (467)
Q Consensus       384 ~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d--~p~P~~~~le~~~~p~~~~I~~a  455 (467)
                      ++++-+-+|+|+||++...|--...|...+-+.+   -+.--.|+++|.  .|+.|+-+     .|+.++++.+
T Consensus       366 ~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aG---AkeVh~riasPpi~~pC~yGID-----~pt~~eLIA~  431 (495)
T PRK07349        366 LKDVLAGKRIIIVDDSIVRGTTSRKIVKALRDAG---ATEVHMRISSPPVTHPCFYGID-----TDTQDQLIAA  431 (495)
T ss_pred             CHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCC---CCEEEEEECCCCCCCCCCCCCC-----CCCHHHHHHC
T ss_conf             6788589859998266055746999999999769---9889999689985777757557-----8997999757


No 486
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=21.05  E-value=50  Score=12.71  Aligned_cols=20  Identities=25%  Similarity=0.554  Sum_probs=0.0

Q ss_pred             HHHHHHHHHCCCCCEEEEEC
Q ss_conf             22355443113650699932
Q gi|254780673|r  146 LRDAIAEEMRRDKDVFIMGE  165 (467)
Q Consensus       146 ~~~a~~e~m~~d~~~~~~ge  165 (467)
                      +.+++...|+.||+++++||
T Consensus       198 ~~~ll~~~LR~~PD~IivGE  217 (283)
T pfam00437       198 FADLLRAALRQRPDRIMVGE  217 (283)
T ss_pred             HHHHHHHHHCCCCCEEEECC
T ss_conf             99999996388999897578


No 487
>TIGR01704 MTA/SAH-Nsdase MTA/SAH nucleosidase; InterPro: IPR010049   This entry represents the enzyme 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase which acts on its two substrates at the same active site. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulphur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria , ,]. This enzyme is widely distributed in bacteria. ; GO: 0008782 adenosylhomocysteine nucleosidase activity, 0008930 methylthioadenosine nucleosidase activity, 0009164 nucleoside catabolic process, 0019509 methionine salvage.
Probab=20.91  E-value=42  Score=13.22  Aligned_cols=14  Identities=36%  Similarity=0.510  Sum_probs=0.0

Q ss_pred             HHHHCCCCCEECCC
Q ss_conf             47540811101166
Q gi|254780673|r  180 LLQEFGCERVIDTP  193 (467)
Q Consensus       180 l~~~fg~~R~~d~p  193 (467)
                      |+++|.|+-+||||
T Consensus        61 LL~~~KPD~~INTG   74 (229)
T TIGR01704        61 LLDRYKPDVVINTG   74 (229)
T ss_pred             HHHCCCCCEEEECC
T ss_conf             87507997698588


No 488
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=20.84  E-value=51  Score=12.68  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=0.0

Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf             8887531004675279733006857999999999
Q gi|254780673|r  354 TKAAIELEKNGIDAELIDLRTIRPMDWQTIFESV  387 (467)
Q Consensus       354 ~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv  387 (467)
                      ..+-+.|.+-||.+++|=+||=.||+.++..|.+
T Consensus       201 QhSVKeLRs~Gi~PD~i~cRs~~~l~~~~k~KiA  234 (571)
T TIGR00337       201 QHSVKELRSLGIQPDIIICRSSEPLDKSLKKKIA  234 (571)
T ss_pred             HHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf             2789999860988868998188768977764521


No 489
>PRK12438 hypothetical protein; Provisional
Probab=20.79  E-value=51  Score=12.68  Aligned_cols=99  Identities=8%  Similarity=-0.000  Sum_probs=0.0

Q ss_pred             EEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89899823788513269758999437777211222233212344222332233322233221000000112333310000
Q gi|254780673|r   55 ILGKILCPNGTKNVKVNTPIAAILQEGETALDIDKMLLEKPDVAISPSSKNTTLVFSNEDNDKVDHQKSKNDIQDSSFAH  134 (467)
Q Consensus        55 ~i~~ilv~eG~e~V~VG~~ia~i~~ege~a~~~~~~~a~~~~aa~aaa~~~~s~~~~~a~~~a~~~~~a~~~~~~~~~~~  134 (467)
                      .|++++|.=.++.-.-|.-|+.=.+-.++....=.....+.+.+.........++....+++.....++....++..++.
T Consensus       862 ~L~rViVay~~~~~~~Gd~v~~~~TL~eAL~~vFgg~sg~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  941 (979)
T PRK12438        862 QLSRVLVSVREPRTEGGVRVGYAPTLAESLDQVFGPGTGRVATAPGGDAASAPPPGAGGPAPPQAVPPPRTTQPPAAPPR  941 (979)
T ss_pred             EEEEEEEEEECCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             00067888421566778748750119999999748897654578887778899987889998767899998777788988


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q ss_conf             0000000000122355443
Q gi|254780673|r  135 APTSSITVREALRDAIAEE  153 (467)
Q Consensus       135 ~~~~~~TvRea~~~a~~e~  153 (467)
                      .+.....--.++++|++..
T Consensus       942 ~~~~~~~~~~~~~~~~~~~  960 (979)
T PRK12438        942 GPDVPPATVAELRETLADL  960 (979)
T ss_pred             CCCCCCHHHHHHHHHHHHH
T ss_conf             8787623389999999999


No 490
>pfam10011 DUF2254 Predicted membrane protein (DUF2254). Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=20.78  E-value=51  Score=12.67  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=0.0

Q ss_pred             CEEEEEEEECCCCCEECCCCEEEEE
Q ss_conf             1578987741789762589859999
Q gi|254780673|r   15 TEGNIAKWKKNEGDLIKQGDIIYEV   39 (467)
Q Consensus        15 ~eG~i~~W~vk~GD~V~~gd~l~ei   39 (467)
                      +.+......+.+||.|-+|++|+.+
T Consensus       219 ~~d~~i~l~~~pG~fV~~g~pl~~v  243 (369)
T pfam10011       219 EHDGVIYLLVRPGDFVTPGTPLARV  243 (369)
T ss_pred             HCCCEEEEEECCCCEECCCCEEEEE
T ss_conf             8797899982798736899769998


No 491
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=20.66  E-value=51  Score=12.66  Aligned_cols=58  Identities=16%  Similarity=0.143  Sum_probs=0.0

Q ss_pred             EEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             4431687458602578888888875310046752797330068579999999998719899995
Q gi|254780673|r  334 IHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVE  397 (467)
Q Consensus       334 i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt~~~i~ve  397 (467)
                      .++.|+.+.+-..-+.-...+- ...|.+.||+++.+|     +-|.+.+.+.+.+.-|+|.+|
T Consensus        88 ll~~Gd~iv~~~~~Yg~T~~l~-~~~l~~~gi~~~~~d-----~~d~~~~~~~i~~~Tkli~~E  145 (388)
T PRK08861         88 LLGPDDLIVAPHDCYGGTYRLF-NTRANKGDFKVLFVD-----QSDAAALDAALAKKPKLILLE  145 (388)
T ss_pred             HCCCCCEEEECCCCCCCHHHHH-HHHHHHCCEEEEEEC-----CCCCHHHHHHCCCCCEEEEEE
T ss_conf             3689998998689855068999-989862886999989-----998278997348785399984


No 492
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=20.65  E-value=45  Score=13.04  Aligned_cols=32  Identities=22%  Similarity=0.372  Sum_probs=0.0

Q ss_pred             CCEEEEHHH-HHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             745860257-88888888753100467527973
Q gi|254780673|r  340 DVTIISFGI-GMTYATKAAIELEKNGIDAELID  371 (467)
Q Consensus       340 ditii~~G~-~~~~a~~aa~~L~~~gi~~~vid  371 (467)
                      |+.++++|. ......+..+.|.+.||.+|+.|
T Consensus        56 eilliGtG~~~~~~~~~~~~~l~~~gI~vE~M~   88 (114)
T cd05125          56 EILVIGTGRKSRPLSPELRKYFKKLGIAVEVVD   88 (114)
T ss_pred             CEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEC
T ss_conf             999986699877899999999997599179958


No 493
>COG3547 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=20.58  E-value=47  Score=12.88  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=0.0

Q ss_pred             EEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             586025788888888753100467527973300685
Q gi|254780673|r  342 TIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRP  377 (467)
Q Consensus       342 tii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~P  377 (467)
                      ++|.+-.+ ......+..|.+.|+.+-+||.+.+++
T Consensus        37 ~~v~~Ea~-~~~~~~~~~l~~~g~~v~~i~p~~v~~   71 (303)
T COG3547          37 CIVGIEAT-GYSENLARYLRAEGYPVRLINPRQVKK   71 (303)
T ss_pred             CEEEEEEC-CCHHHHHHHHHHCCCEEEEECHHHHHH
T ss_conf             46999305-211579999976698279987577666


No 494
>PRK10436 hypothetical protein; Provisional
Probab=20.56  E-value=51  Score=12.64  Aligned_cols=20  Identities=30%  Similarity=0.654  Sum_probs=0.0

Q ss_pred             HHHHHHHHHCCCCCEEEEEC
Q ss_conf             22355443113650699932
Q gi|254780673|r  146 LRDAIAEEMRRDKDVFIMGE  165 (467)
Q Consensus       146 ~~~a~~e~m~~d~~~~~~ge  165 (467)
                      ...++.-.|+.||+|+++||
T Consensus       273 fa~~lrs~LRqDPDVImvGE  292 (461)
T PRK10436        273 FQRVLRALLRQDPDVIMVGE  292 (461)
T ss_pred             HHHHHHHHHCCCCCEEEECC
T ss_conf             99999998746999998657


No 495
>PRK06767 methionine gamma-lyase; Provisional
Probab=20.54  E-value=51  Score=12.64  Aligned_cols=66  Identities=20%  Similarity=0.347  Sum_probs=0.0

Q ss_pred             EEECCCCCEE--EEHHHHHHHHHHHHHHHHCCCCCEEEEECC------------------------CCCCCCHHHHHHHH
Q ss_conf             4431687458--602578888888875310046752797330------------------------06857999999999
Q gi|254780673|r  334 IHRQGSDVTI--ISFGIGMTYATKAAIELEKNGIDAELIDLR------------------------TIRPMDWQTIFESV  387 (467)
Q Consensus       334 i~~~G~diti--i~~G~~~~~a~~aa~~L~~~gi~~~vid~r------------------------~l~Pld~~~i~~sv  387 (467)
                      +++.|+.+.+  -.||.+...+.   ..|.+.||.++.+|..                        ++.=.|.+.|.+.+
T Consensus        96 ~l~~Gd~vv~~~~~Yg~T~~l~~---~~~~~~gI~~~~~d~~~~~~~~~~i~~~Tklv~~EspsNP~l~v~Di~~i~~~A  172 (386)
T PRK06767         96 FLKAGDHIICSNGLYGCTYGFLE---VLEEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVA  172 (386)
T ss_pred             CCCCCCEEEECCCCCCCHHHHHH---HHHHHCCEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             07999989983798223466999---988873758999689888999975688825999977999876712799999986


Q ss_pred             HHCCCEEEEECCCCC
Q ss_conf             871989999578876
Q gi|254780673|r  388 KKTGRLVTVEEGYPQ  402 (467)
Q Consensus       388 ~kt~~~i~vee~~~~  402 (467)
                      ++.+-+++||..|-+
T Consensus       173 ~~~g~~~vvDNT~at  187 (386)
T PRK06767        173 KRNGLLVIVDNTFCS  187 (386)
T ss_pred             HHCCCEEEEECCCCC
T ss_conf             006734997457642


No 496
>KOG2862 consensus
Probab=20.50  E-value=52  Score=12.63  Aligned_cols=85  Identities=15%  Similarity=0.235  Sum_probs=0.0

Q ss_pred             EEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC-CCEEEEECCCCCCCHHHHHHH
Q ss_conf             4443168745860257888888887531004675279733006857999999999871-989999578876767899999
Q gi|254780673|r  333 RIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPMDWQTIFESVKKT-GRLVTVEEGYPQSSVGSTIAN  411 (467)
Q Consensus       333 ~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vid~r~l~Pld~~~i~~sv~kt-~~~i~vee~~~~gg~g~~i~~  411 (467)
                      +.+..|+.+.++..|.   +..++++.++.-|+.++++-..+=--...+.|.+.+..+ -++++|-.+-...|+-..+.+
T Consensus        87 N~lePgd~vLv~~~G~---wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~  163 (385)
T KOG2862          87 NLLEPGDNVLVVSTGT---WGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLA  163 (385)
T ss_pred             HHCCCCCEEEEEEECH---HHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH
T ss_conf             5257897499997233---7778899998608655587158556754999999987158745999834764111155788


Q ss_pred             HHHHHHHHH
Q ss_conf             999967764
Q gi|254780673|r  412 QVQRKVFDY  420 (467)
Q Consensus       412 ~i~e~~f~~  420 (467)
                      ...+-|..+
T Consensus       164 ~~g~lc~k~  172 (385)
T KOG2862         164 ISGELCHKH  172 (385)
T ss_pred             HHHHHHHCC
T ss_conf             887874067


No 497
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=20.34  E-value=52  Score=12.61  Aligned_cols=46  Identities=24%  Similarity=0.333  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf             10000000000000012235544311365069993243445886653236475408111
Q gi|254780673|r  130 SSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCER  188 (467)
Q Consensus       130 ~~~~~~~~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R  188 (467)
                      ..+.++..+.-.+-+|||+|+ |....|.+|.++|            |-||+..-|-.|
T Consensus       154 ~~P~Ps~~Rc~~LG~Air~AI-es~p~DlRVaiig------------TGGLSHql~gpr  199 (284)
T PRK13366        154 QYPVPSGRRCFALGQAIRRAV-ESYDEDLNVQIWG------------TGGMSHQLQGPR  199 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH-HHCCCCCCEEEEE------------CCCCCCCCCCCC
T ss_conf             799999899999999999999-8578776289993------------686557789986


No 498
>PRK06128 oxidoreductase; Provisional
Probab=20.34  E-value=52  Score=12.61  Aligned_cols=57  Identities=23%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             ECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEE--ECCCCCCCCHHHHHHHHHHCCCE
Q ss_conf             31687458602578888888875310046752797--33006857999999999871989
Q gi|254780673|r  336 RQGSDVTIISFGIGMTYATKAAIELEKNGIDAELI--DLRTIRPMDWQTIFESVKKTGRL  393 (467)
Q Consensus       336 ~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vi--d~r~l~Pld~~~i~~sv~kt~~~  393 (467)
                      ++|-+|.|.....--..+.++++.++..|..+..+  |++.-.-.+ +.+.+.+++.|++
T Consensus        77 ~eGA~Vvi~~~~~~~~~a~~~~~~i~~~G~~a~~v~~Dvsd~~~~~-~~v~~~~~~~G~i  135 (300)
T PRK06128         77 REGADIVLNYLPEEEQDAAEVVQLIQAEGRKAVAVPGDLKDEAFCR-QLVERAVKELGGL  135 (300)
T ss_pred             HCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHHHHHHHHHCCC
T ss_conf             8699999942995567899999999965981899974789999999-9999999980999


No 499
>TIGR00364 TIGR00364 exsB protein; InterPro: IPR004479   This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome.    In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , .    In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance .   The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr ..
Probab=20.25  E-value=52  Score=12.60  Aligned_cols=44  Identities=25%  Similarity=0.461  Sum_probs=0.0

Q ss_pred             EECC--CCCEEEEH--HHH-HHHHHHHHHHHHCC-CCCEE-EEECCCCCCC
Q ss_conf             4316--87458602--578-88888887531004-67527-9733006857
Q gi|254780673|r  335 HRQG--SDVTIISF--GIG-MTYATKAAIELEKN-GIDAE-LIDLRTIRPM  378 (467)
Q Consensus       335 ~~~G--~ditii~~--G~~-~~~a~~aa~~L~~~-gi~~~-vid~r~l~Pl  378 (467)
                      +++|  ..|.-||+  |-. -..=++.|+++.+. ||.-. +||+.+++-|
T Consensus        19 ~~~~GkyeV~a~TF~YGQR~H~~Ele~A~~ia~~Lgi~~~~~~Dl~~l~~l   69 (227)
T TIGR00364        19 LDEGGKYEVHAITFDYGQRAHSRELESARKIAEALGIRHHFVIDLSLLKQL   69 (227)
T ss_pred             HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf             961795079985465013789999999999999808970786177999855


No 500
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223   This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=20.17  E-value=52  Score=12.59  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=0.0

Q ss_pred             CEEEEECCCCC-CCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             06999324344-58866532364754081110116666278998999988718864456666678999999
Q gi|254780673|r  159 DVFIMGEEVAE-YQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAID  228 (467)
Q Consensus       159 ~~~~~gedv~~-~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~d  228 (467)
                      +++|    |.+ .|||-|+|                    .-.-++++||..|.|.++-  .+|+-+|=+|
T Consensus         2 ~viV----iTSGKGGVGKTT--------------------tTANlG~aLA~lG~kVvli--D~DiGLRNLD   46 (272)
T TIGR01968         2 RVIV----ITSGKGGVGKTT--------------------TTANLGTALARLGKKVVLI--DADIGLRNLD   46 (272)
T ss_pred             EEEE----EEECCCCCCHHH--------------------HHHHHHHHHHHCCCEEEEE--ECCCCCHHHH
T ss_conf             5899----981788977358--------------------9899999999619828999--5475703457


Done!