HHsearch alignment for GI: 254780673 and conserved domain: pfam01855
>pfam01855 POR_N domain. This family includes the N terminal structural domain of the pyruvate ferredoxin oxidoreductase. This domain binds thiamine diphosphate, and along with domains II and IV, is involved in inter subunit contacts. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.
Probab=97.26 E-value=0.002 Score=43.63 Aligned_cols=108 Identities=20% Similarity=0.161 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCCCCHHHHHHH
Q ss_conf 666627899899998871886445666667899999999987886742117767888799830--244576444433216
Q gi|254780673|r 192 TPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGP--NGAAARVAAQHSQCY 269 (467)
Q Consensus 192 ~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p--~G~~~~~g~~Hs~~~ 269 (467)
T Consensus 41 ~~e~E~~A~~~~~GAs~aGara~ta-Ts~~Gl~lm~e~l~~aa---------g~~~P~V~~v~~R~~~~~gl-~~~~eq~ 109 (230)
T pfam01855 41 QMESEIGAISAVIGAAAAGARAMTA-TSGQGLLLMIENLGKAA---------GEELPIVIHVVARAGPSPGL-SIFGDQG 109 (230)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEE-CCCCCHHHHHHHHHHHH---------HCCCCEEEEEEECCCCCCCC-CCCCCHH
T ss_conf 8088799999999999848620440-26752767567888998---------73688599999667899877-6665137
Q ss_pred HHHHHHHCCCEEEEEECCHHCCCHHHH----HHHCCCCEEEECCC
Q ss_conf 887632203138665221000105556----54137834764021
Q gi|254780673|r 270 AAWYSHVPGLKVVIPYTASDAKGLLKA----AIRDPNPVIFLENE 310 (467)
Q Consensus 270 ~~~~~~iPgl~V~~P~~~~d~~~ll~~----ai~~~~Pvi~le~~ 310 (467)
T Consensus 110 D~~~~rd~g~~vl~~~~~QEa~d~~~~A~~lae~~~~Pv~v~~Dg 154 (230)
T pfam01855 110 DLMAARDTGWIVLAPENVQEAFDLALVAFNLAEKVRTPVIHLFDG 154 (230)
T ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 899998569089946999999999999999999988998998256