254780674
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
GeneID in NCBI database: | 8209678 | Locus tag: | CLIBASIA_02805 |
Protein GI in NCBI database: | 254780674 | Protein Accession: | YP_003065087.1 |
Gene range: | -(593175, 594446) | Protein Length: | 423aa |
Gene description: | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase | ||
COG prediction: | [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes | ||
KEGG prediction: | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] | ||
SEED prediction: | Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) | ||
Pathway involved in KEGG: | Glycolysis / Gluconeogenesis [PATH:las00010]
Citrate cycle (TCA cycle) [PATH:las00020] Pyruvate metabolism [PATH:las00620] | ||
Subsystem involved in SEED: | Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
Lipoic acid metabolism | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 423 | pyruvate dehydrogenase complex dihydrolipoamide acetylt | |||
254781052 | 436 | dihydrolipoamide succinyltransferase [Candidatus L | 4e-38 | ||
254780673 | 467 | pyruvate dehydrogenase subunit beta [Candidatus Li | 5e-25 | ||
254780725 | 427 | response regulator receiver protein [Candidatus Li | 0.033 |
>gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 436 | Back alignment |
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Score = 150 bits (379), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 120/433 (27%), Positives = 204/433 (47%), Gaps = 28/433 (6%) Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 M I +PSL ++ E + W+K+ G+ + G+IL E+ETDK +E S G + E+ Sbjct: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 Query: 62 VPAG--TENIAVNSPILNILMDSTE-IPPSPPLSKENIVEVREEHSHSSPVVVREKHSKN 118 V G I+ I D E I + P S N + + P Sbjct: 79 VAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMP---------- 128 Query: 119 RPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSF--GLV 176 SP A +L E G+ S + G+G G+I+KSD+ IS + D ST+ S G+ Sbjct: 129 ---HSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVF 185 Query: 177 DESIDANILNLFAKDSYEV------IPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNL 230 I++ N+F K S + +R+T+A RL+ ++ T + N+ + Sbjct: 186 SRIINS-ASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRI 244 Query: 231 LSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDIS 290 +S+R +R ++ K+ KA + + ++ N + ++ + I Sbjct: 245 ISIR---SRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIG 301 Query: 291 VAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLG 350 VAV G+V P+IR AD+ +I++I E+ +L + A+ L + Q GT +ISN G+ G Sbjct: 302 VAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYG 361 Query: 351 INSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAK 410 ++NPPQS IL + +++ + ++ +I + +M LS DHR VDG A L + Sbjct: 362 SLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVR 421 Query: 411 FKEYIENPVWMLM 423 KE +E+P ++ Sbjct: 422 LKELLEDPERFIL 434 |
>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 467 | Back alignment |
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Score = 107 bits (266), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 49/77 (63%), Positives = 61/77 (79%) Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65 +TMPSLSPTMTEG +AKW K EGD I GDI+ E+ETDKA+ME ES+DEGI+ +IL P G Sbjct: 5 VTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNG 64 Query: 66 TENIAVNSPILNILMDS 82 T+N+ VN+PI IL + Sbjct: 65 TKNVKVNTPIAAILQEG 81 |
>gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] Length = 427 | Back alignment |
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Score = 31.2 bits (69), Expect = 0.033, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 17/125 (13%) Query: 173 FGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLS 232 +G + + D + +N + Y P I K RL P FY N+ ++L+ Sbjct: 203 YGTANINFDKDPINSISDAIY---PVGRIDKAFVSRL-------PVFYAE---NL-SILT 248 Query: 233 LREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVA 292 ++RT F + I + V DI+ + F L ++ VP SWT + + I+ + Sbjct: 249 APAMLSRTYDFDEKMI---VPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTS 305 Query: 293 VSIPG 297 + + G Sbjct: 306 LDLAG 310 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 423 | pyruvate dehydrogenase complex dihydrolipoamide acetylt | |||
315122215 | 428 | pyruvate dehydrogenase complex dihydrolipoamide acetylt | 1 | 1e-175 | |
222148558 | 444 | pyruvate dehydrogenase complex dihydrolipoamide acetylt | 1 | 1e-124 | |
325292762 | 456 | dihydrolipoamide acetyltransferase [Agrobacterium sp. H | 1 | 1e-123 | |
254714201 | 420 | branched-chain alpha-keto acid dehydrogenase subunit E2 | 1 | 1e-122 | |
15965200 | 447 | dihydrolipoamide S-acetyltransferase protein [Sinorhizo | 1 | 1e-122 | |
110633980 | 452 | branched-chain alpha-keto acid dehydrogenase subunit E2 | 1 | 1e-121 | |
319783390 | 471 | pyruvate dehydrogenase complex dihydrolipoamide acetylt | 1 | 1e-121 | |
227821849 | 447 | dihydrolipoyllysine-residue acetyltransferase component | 1 | 1e-120 | |
239832016 | 444 | pyruvate dehydrogenase complex dihydrolipoamide acetylt | 1 | 1e-120 | |
306843992 | 447 | pyruvate dehydrogenase complex dihydrolipoamide acetylt | 1 | 1e-120 |
>gi|315122215|ref|YP_004062704.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 428 | Back alignment and organism information |
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Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 310/428 (72%), Positives = 359/428 (83%), Gaps = 6/428 (1%) Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 MI+TITMPSLSPTM GKLAKW+ ++GDKI PGDI+CEIETDKAIMEFESVDEG++ EIL Sbjct: 1 MINTITMPSLSPTMKTGKLAKWLVKKGDKIYPGDIICEIETDKAIMEFESVDEGVVHEIL 60 Query: 62 VPAGTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHS--SPVVVREKH--SK 117 GTENI VNSPILNIL+D P+P L ++N VE+ +E S S EK + Sbjct: 61 TSEGTENIKVNSPILNILIDCDGGAPAPILPEKNFVEIEKESSDPAISSFAPTEKKVCGQ 120 Query: 118 NRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGL-- 175 + P +SPLARRLA E+GIDLSS+SGSGP GRIVK+DIE LI T VK ST QS + Sbjct: 121 DFPASSPLARRLAKENGIDLSSVSGSGPRGRIVKNDIEQLILHNTGVKHASTAQSASIES 180 Query: 176 VDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLRE 235 ++ S+D +I+ LFA +SYE+IPHDN+RKTIA RLQQSKQTIPHFYVSIDCNIDNLLSLR+ Sbjct: 181 MNSSVDDDIMRLFAPNSYEIIPHDNMRKTIASRLQQSKQTIPHFYVSIDCNIDNLLSLRQ 240 Query: 236 QMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSI 295 QMN Q +++E NKISVND+ILKAF+LAM+QVPEANVSWTTNA+IRHK+IDISVAVSI Sbjct: 241 QMNLFAQSNKKENINKISVNDVILKAFSLAMLQVPEANVSWTTNALIRHKNIDISVAVSI 300 Query: 296 PGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFC 355 PGG+VTPI+RQ ++KSI DISLEVKQL QRAKQRKLKP+EYQGGTTS+SNMGM GI++FC Sbjct: 301 PGGLVTPIVRQVNKKSISDISLEVKQLVQRAKQRKLKPQEYQGGTTSVSNMGMFGISNFC 360 Query: 356 AVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYI 415 AVINPPQSTILAIGAG +K +FQN IKV TIMNATLSADHRSVDGA+ASKLLAKFKEYI Sbjct: 361 AVINPPQSTILAIGAGVQKPIFQNGAIKVVTIMNATLSADHRSVDGAVASKLLAKFKEYI 420 Query: 416 ENPVWMLM 423 ENP WML+ Sbjct: 421 ENPAWMLL 428 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222148558|ref|YP_002549515.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Agrobacterium vitis S4] Length = 444 | Back alignment and organism information |
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>gi|325292762|ref|YP_004278626.1| dihydrolipoamide acetyltransferase [Agrobacterium sp. H13-3] Length = 456 | Back alignment and organism information |
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>gi|254714201|ref|ZP_05176012.1| branched-chain alpha-keto acid dehydrogenase subunit E2 [Brucella ceti M644/93/1] Length = 420 | Back alignment and organism information |
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>gi|15965200|ref|NP_385553.1| dihydrolipoamide S-acetyltransferase protein [Sinorhizobium meliloti 1021] Length = 447 | Back alignment and organism information |
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>gi|110633980|ref|YP_674188.1| branched-chain alpha-keto acid dehydrogenase subunit E2 [Mesorhizobium sp. BNC1] Length = 452 | Back alignment and organism information |
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>gi|319783390|ref|YP_004142866.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 471 | Back alignment and organism information |
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>gi|227821849|ref|YP_002825819.1| dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex [Sinorhizobium fredii NGR234] Length = 447 | Back alignment and organism information |
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>gi|239832016|ref|ZP_04680345.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Ochrobactrum intermedium LMG 3301] Length = 444 | Back alignment and organism information |
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>gi|306843992|ref|ZP_07476587.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Brucella sp. BO1] Length = 447 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 423 | pyruvate dehydrogenase complex dihydrolipoamide acetylt | ||
TIGR01349 | 435 | TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase compl | 1e-137 | |
PRK11856 | 411 | PRK11856, PRK11856, branched-chain alpha-keto acid dehy | 1e-133 | |
PLN02744 | 539 | PLN02744, PLN02744, dihydrolipoyllysine-residue acetylt | 1e-107 | |
COG0508 | 404 | COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase co | 1e-96 | |
PRK11855 | 547 | PRK11855, PRK11855, dihydrolipoamide acetyltransferase; | 1e-65 | |
TIGR01347 | 403 | TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex d | 1e-56 | |
PRK05704 | 407 | PRK05704, PRK05704, dihydrolipoamide succinyltransferas | 5e-54 | |
PRK11854 | 633 | PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltra | 2e-51 | |
PLN02528 | 416 | PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 c | 8e-51 | |
PTZ00144 | 418 | PTZ00144, PTZ00144, dihydrolipoamide succinyltransferas | 3e-47 | |
KOG0558 | 474 | KOG0558, KOG0558, KOG0558, Dihydrolipoamide transacylas | 5e-47 | |
TIGR01348 | 546 | TIGR01348, PDHac_trf_long, pyruvate dehydrogenase compl | 2e-45 | |
KOG0559 | 457 | KOG0559, KOG0559, KOG0559, Dihydrolipoamide succinyltra | 4e-40 | |
TIGR02927 | 590 | TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E | 5e-35 | |
KOG0557 | 470 | KOG0557, KOG0557, KOG0557, Dihydrolipoamide acetyltrans | 1e-106 | |
pfam00198 | 231 | pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acylt | 7e-79 | |
PLN02226 | 463 | PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 com | 2e-22 | |
PRK14843 | 347 | PRK14843, PRK14843, dihydrolipoamide acetyltransferase; | 7e-46 | |
PRK11857 | 306 | PRK11857, PRK11857, dihydrolipoamide acetyltransferase; | 9e-33 | |
PRK11892 | 464 | PRK11892, PRK11892, pyruvate dehydrogenase subunit beta | 2e-35 | |
cd06849 | 74 | cd06849, lipoyl_domain, Lipoyl domain of the dihydrolip | 1e-21 | |
pfam00364 | 73 | pfam00364, Biotin_lipoyl, Biotin-requiring enzyme | 2e-12 | |
cd06663 | 73 | cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domai | 3e-11 | |
PRK11855 | 547 | PRK11855, PRK11855, dihydrolipoamide acetyltransferase; | 1e-08 | |
PRK11854 | 633 | PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltra | 2e-06 | |
PLN02226 | 463 | PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 com | 4e-05 | |
cd06850 | 67 | cd06850, biotinyl_domain, The biotinyl-domain or biotin | 4e-04 | |
PRK11854 | 633 | PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltra | 9e-04 | |
COG0511 | 140 | COG0511, AccB, Biotin carboxyl carrier protein [Lipid m | 0.002 | |
TIGR01348 | 546 | TIGR01348, PDHac_trf_long, pyruvate dehydrogenase compl | 0.002 | |
PRK14875 | 371 | PRK14875, PRK14875, acetoin dehydrogenase E2 subunit di | 8e-21 | |
pfam02817 | 39 | pfam02817, E3_binding, e3 binding domain | 4e-13 | |
PRK12270 | 1228 | PRK12270, kgd, alpha-ketoglutarate decarboxylase; Revie | 2e-10 | |
TIGR02927 | 590 | TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E | 5e-06 |
>gnl|CDD|162311 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
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>gnl|CDD|183339 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed | Back alignment and domain information |
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>gnl|CDD|178345 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex | Back alignment and domain information |
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>gnl|CDD|30854 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|183338 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
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>gnl|CDD|162309 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) | Back alignment and domain information |
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>gnl|CDD|180214 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated | Back alignment and domain information |
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>gnl|CDD|183337 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
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>gnl|CDD|178143 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component | Back alignment and domain information |
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>gnl|CDD|185477 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
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>gnl|CDD|35778 KOG0558, KOG0558, KOG0558, Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|162310 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
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>gnl|CDD|35779 KOG0559, KOG0559, KOG0559, Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|131973 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
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>gnl|CDD|35777 KOG0557, KOG0557, KOG0557, Dihydrolipoamide acetyltransferase [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|143956 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | Back alignment and domain information |
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>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component | Back alignment and domain information |
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>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional | Back alignment and domain information |
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>gnl|CDD|183340 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
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>gnl|CDD|183363 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
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>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
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>gnl|CDD|144088 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme | Back alignment and domain information |
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>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
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>gnl|CDD|183338 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
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>gnl|CDD|183337 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
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>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component | Back alignment and domain information |
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>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
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>gnl|CDD|183337 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
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>gnl|CDD|30857 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
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>gnl|CDD|162310 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
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>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
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>gnl|CDD|111687 pfam02817, E3_binding, e3 binding domain | Back alignment and domain information |
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>gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
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>gnl|CDD|131973 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 423 | pyruvate dehydrogenase complex dihydrolipoamide acetylt | ||
PRK11855 | 549 | dihydrolipoamide acetyltransferase; Reviewed | 100.0 | |
PRK05704 | 406 | dihydrolipoamide succinyltransferase; Validated | 100.0 | |
TIGR01349 | 584 | PDHac_trf_mito pyruvate dehydrogenase complex dihydroli | 100.0 | |
TIGR01347 | 435 | sucB 2-oxoglutarate dehydrogenase, E2 component, dihydr | 100.0 | |
TIGR01348 | 655 | PDHac_trf_long pyruvate dehydrogenase complex dihydroli | 100.0 | |
TIGR02927 | 607 | SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, | 100.0 | |
PTZ00144 | 430 | dihydrolipoamide succinyltransferase; Provisional | 100.0 | |
COG0508 | 404 | AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dih | 100.0 | |
PRK11856 | 324 | branched-chain alpha-keto acid dehydrogenase subunit E2 | 100.0 | |
KOG0557 | 470 | consensus | 100.0 | |
KOG0558 | 474 | consensus | 100.0 | |
KOG0559 | 457 | consensus | 100.0 | |
PRK11854 | 630 | aceF dihydrolipoamide acetyltransferase; Validated | 100.0 | |
PRK11857 | 316 | dihydrolipoamide acetyltransferase; Reviewed | 100.0 | |
pfam00198 | 231 | 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase ( | 100.0 | |
PRK12270 | 1234 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 100.0 | |
PRK13757 | 219 | chloramphenicol acetyltransferase; Provisional | 99.38 | |
pfam00302 | 206 | CAT Chloramphenicol acetyltransferase. | 99.19 | |
COG4845 | 219 | Chloramphenicol O-acetyltransferase [Defense mechanisms | 98.65 | |
TIGR02927 | 607 | SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, | 99.94 | |
PRK11855 | 549 | dihydrolipoamide acetyltransferase; Reviewed | 99.93 | |
PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 99.93 | |
PRK11854 | 630 | aceF dihydrolipoamide acetyltransferase; Validated | 99.92 | |
cd06663 | 73 | Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are pre | 99.84 | |
TIGR01348 | 655 | PDHac_trf_long pyruvate dehydrogenase complex dihydroli | 99.83 | |
cd06849 | 74 | lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltr | 99.82 | |
pfam00364 | 73 | Biotin_lipoyl Biotin-requiring enzyme. This family cove | 99.78 | |
TIGR01349 | 584 | PDHac_trf_mito pyruvate dehydrogenase complex dihydroli | 99.76 | |
cd06850 | 67 | biotinyl_domain The biotinyl-domain or biotin carboxyl | 99.39 | |
PRK05641 | 148 | putative acetyl-CoA carboxylase biotin carboxyl carrier | 99.22 | |
COG0511 | 140 | AccB Biotin carboxyl carrier protein [Lipid metabolism] | 99.17 | |
PRK06549 | 132 | acetyl-CoA carboxylase biotin carboxyl carrier protein | 99.16 | |
PRK08225 | 70 | acetyl-CoA carboxylase biotin carboxyl carrier protein | 99.1 | |
PRK05889 | 71 | putative acetyl-CoA carboxylase biotin carboxyl carrier | 99.08 | |
PRK07051 | 80 | hypothetical protein; Validated | 98.89 | |
PRK06302 | 155 | acetyl-CoA carboxylase biotin carboxyl carrier protein | 98.8 | |
TIGR01108 | 616 | oadA oxaloacetate decarboxylase alpha subunit; InterPro | 98.76 | |
TIGR02712 | 1226 | urea_carbox urea carboxylase; InterPro: IPR014084 Membe | 98.69 | |
TIGR01235 | 1169 | pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 | 98.46 | |
KOG0368 | 2196 | consensus | 98.08 | |
PRK11578 | 347 | macrolide transporter subunit MacA; Provisional | 97.87 | |
PRK03598 | 331 | hypothetical protein; Provisional | 97.73 | |
TIGR03077 | 110 | not_gcvH glycine cleavage protein H homolog, Chlamydial | 97.42 | |
PRK00624 | 113 | glycine cleavage system protein H; Provisional | 97.34 | |
cd06848 | 96 | GCS_H Glycine cleavage H-protein. Glycine cleavage H-pr | 97.31 | |
PRK09578 | 385 | periplasmic multidrug efflux lipoprotein precursor; Rev | 97.15 | |
COG0509 | 131 | GcvH Glycine cleavage system H protein (lipoate-binding | 97.12 | |
PRK13380 | 132 | glycine cleavage system protein H; Provisional | 97.08 | |
PRK01202 | 127 | glycine cleavage system protein H; Provisional | 97.07 | |
pfam01597 | 122 | GCV_H Glycine cleavage H-protein. This is a family of g | 97.05 | |
TIGR00531 | 159 | BCCP acetyl-CoA carboxylase, biotin carboxyl carrier pr | 96.78 | |
PRK05352 | 448 | Na(+)-translocating NADH-quinone reductase subunit A; P | 96.65 | |
pfam05896 | 257 | NQRA Na(+)-translocating NADH-quinone reductase subunit | 96.56 | |
TIGR00527 | 132 | gcvH glycine cleavage system H protein; InterPro: IPR00 | 95.91 | |
TIGR03309 | 256 | matur_yqeB selenium-dependent molybdenum hydroxylase sy | 94.66 | |
PRK06748 | 84 | hypothetical protein; Validated | 94.25 | |
PRK12784 | 84 | hypothetical protein; Provisional | 93.75 | |
COG4656 | 529 | RnfC Predicted NADH:ubiquinone oxidoreductase, subunit | 93.67 | |
KOG3373 | 172 | consensus | 92.7 | |
COG1726 | 447 | NqrA Na+-transporting NADH:ubiquinone oxidoreductase, s | 92.2 | |
TIGR01945 | 444 | rnfC electron transport complex, RnfABCDGE type, C subu | 91.52 | |
TIGR01936 | 466 | nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocatin | 90.29 | |
PRK05035 | 725 | electron transport complex protein RnfC; Provisional | 90.14 | |
PRK12999 | 1147 | pyruvate carboxylase; Reviewed | 99.0 | |
pfam02817 | 39 | E3_binding e3 binding domain. This family represents a | 98.91 | |
COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and conver | 98.27 | |
cd06253 | 298 | M14_ASTE_ASPA_like_3 A functionally uncharacterized sub | 96.41 | |
cd06255 | 293 | M14_ASTE_ASPA_like_5 A functionally uncharacterized sub | 91.86 | |
PRK10476 | 348 | multidrug resistance protein MdtN; Provisional | 97.65 | |
PRK11556 | 415 | multidrug efflux system subunit MdtA; Provisional | 97.59 | |
PRK10559 | 310 | p-hydroxybenzoic acid efflux subunit AaeA; Provisional | 97.54 | |
PRK09859 | 385 | multidrug efflux system protein MdtE; Provisional | 97.28 | |
PRK09783 | 407 | copper/silver efflux system membrane fusion protein Cus | 96.78 | |
cd06250 | 359 | M14_PaAOTO_like An uncharacterized subgroup of the Succ | 96.12 | |
pfam00529 | 304 | HlyD HlyD family secretion protein. | 95.69 | |
cd06850 | 67 | biotinyl_domain The biotinyl-domain or biotin carboxyl | 95.28 | |
PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 95.02 | |
TIGR01843 | 434 | type_I_hlyD type I secretion membrane fusion protein, H | 95.01 | |
PRK08225 | 70 | acetyl-CoA carboxylase biotin carboxyl carrier protein | 95.0 | |
COG0511 | 140 | AccB Biotin carboxyl carrier protein [Lipid metabolism] | 94.85 | |
PRK05889 | 71 | putative acetyl-CoA carboxylase biotin carboxyl carrier | 93.99 | |
COG0508 | 404 | AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dih | 93.57 | |
PRK06549 | 132 | acetyl-CoA carboxylase biotin carboxyl carrier protein | 92.78 | |
PRK05641 | 148 | putative acetyl-CoA carboxylase biotin carboxyl carrier | 92.64 | |
TIGR00998 | 379 | 8a0101 efflux pump membrane protein; InterPro: IPR00569 | 92.47 | |
cd06663 | 73 | Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are pre | 92.4 | |
PRK12999 | 1147 | pyruvate carboxylase; Reviewed | 92.23 | |
cd06849 | 74 | lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltr | 91.95 | |
PRK09282 | 580 | pyruvate carboxylase subunit B; Validated | 91.36 | |
KOG0238 | 670 | consensus | 97.36 | |
TIGR02645 | 499 | ARCH_P_rylase putative thymidine phosphorylase; InterPr | 92.24 | |
PTZ00144 | 430 | dihydrolipoamide succinyltransferase; Provisional | 95.74 | |
PRK05704 | 406 | dihydrolipoamide succinyltransferase; Validated | 95.46 | |
PRK07051 | 80 | hypothetical protein; Validated | 95.04 | |
PRK03598 | 331 | hypothetical protein; Provisional | 94.62 | |
KOG0559 | 457 | consensus | 94.2 | |
PRK11856 | 324 | branched-chain alpha-keto acid dehydrogenase subunit E2 | 94.2 | |
pfam00529 | 304 | HlyD HlyD family secretion protein. | 93.89 | |
PRK10476 | 348 | multidrug resistance protein MdtN; Provisional | 92.53 | |
PRK11556 | 415 | multidrug efflux system subunit MdtA; Provisional | 92.13 | |
PRK11578 | 347 | macrolide transporter subunit MacA; Provisional | 91.45 | |
pfam07247 | 479 | AATase Alcohol acetyltransferase. This family contains | 95.16 | |
TIGR01108 | 616 | oadA oxaloacetate decarboxylase alpha subunit; InterPro | 94.07 | |
pfam00364 | 73 | Biotin_lipoyl Biotin-requiring enzyme. This family cove | 90.55 |
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
---|
>PRK05704 dihydrolipoamide succinyltransferase; Validated | Back alignment and domain information |
---|
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006257 This group of sequences represent one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex | Back alignment and domain information |
---|
>TIGR01347 sucB 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR006255 These sequences describe the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
---|
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006256 This group of sequences are a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and percent identity (UPGMA) trees | Back alignment and domain information |
---|
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR014276 This entry represents the mainly actinobacterial clade of the E2 component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle | Back alignment and domain information |
---|
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
---|
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
---|
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed | Back alignment and domain information |
---|
>KOG0557 consensus | Back alignment and domain information |
---|
>KOG0558 consensus | Back alignment and domain information |
---|
>KOG0559 consensus | Back alignment and domain information |
---|
>PRK11854 aceF dihydrolipoamide acetyltransferase; Validated | Back alignment and domain information |
---|
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
---|
>pfam00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | Back alignment and domain information |
---|
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
---|
>PRK13757 chloramphenicol acetyltransferase; Provisional | Back alignment and domain information |
---|
>pfam00302 CAT Chloramphenicol acetyltransferase | Back alignment and domain information |
---|
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms] | Back alignment and domain information |
---|
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR014276 This entry represents the mainly actinobacterial clade of the E2 component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle | Back alignment and domain information |
---|
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
---|
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
---|
>PRK11854 aceF dihydrolipoamide acetyltransferase; Validated | Back alignment and domain information |
---|
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
---|
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006256 This group of sequences are a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and percent identity (UPGMA) trees | Back alignment and domain information |
---|
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
---|
>pfam00364 Biotin_lipoyl Biotin-requiring enzyme | Back alignment and domain information |
---|
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006257 This group of sequences represent one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex | Back alignment and domain information |
---|
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
---|
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
---|
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
---|
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
---|
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
---|
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
---|
>PRK07051 hypothetical protein; Validated | Back alignment and domain information |
---|
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
---|
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea | Back alignment and domain information |
---|
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
---|
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis | Back alignment and domain information |
---|
>KOG0368 consensus | Back alignment and domain information |
---|
>PRK11578 macrolide transporter subunit MacA; Provisional | Back alignment and domain information |
---|
>PRK03598 hypothetical protein; Provisional | Back alignment and domain information |
---|
>TIGR03077 not_gcvH glycine cleavage protein H homolog, Chlamydial | Back alignment and domain information |
---|
>PRK00624 glycine cleavage system protein H; Provisional | Back alignment and domain information |
---|
>cd06848 GCS_H Glycine cleavage H-protein | Back alignment and domain information |
---|
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed | Back alignment and domain information |
---|
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK13380 glycine cleavage system protein H; Provisional | Back alignment and domain information |
---|
>PRK01202 glycine cleavage system protein H; Provisional | Back alignment and domain information |
---|
>pfam01597 GCV_H Glycine cleavage H-protein | Back alignment and domain information |
---|
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein; InterPro: IPR001249 The proteins in this family are a component of the acetyl coenzyme A carboxylase complex (6 | Back alignment and domain information |
---|
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional | Back alignment and domain information |
---|
>pfam05896 NQRA Na(+)-translocating NADH-quinone reductase subunit A (NQRA) | Back alignment and domain information |
---|
>TIGR00527 gcvH glycine cleavage system H protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes | Back alignment and domain information |
---|
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family | Back alignment and domain information |
---|
>PRK06748 hypothetical protein; Validated | Back alignment and domain information |
---|
>PRK12784 hypothetical protein; Provisional | Back alignment and domain information |
---|
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion] | Back alignment and domain information |
---|
>KOG3373 consensus | Back alignment and domain information |
---|
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion] | Back alignment and domain information |
---|
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation | Back alignment and domain information |
---|
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; InterPro: IPR008703 This family consists of several bacterial Na^+-translocating NADH-quinone reductase subunit A (NQRA) proteins | Back alignment and domain information |
---|
>PRK05035 electron transport complex protein RnfC; Provisional | Back alignment and domain information |
---|
>PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
---|
>pfam02817 E3_binding e3 binding domain | Back alignment and domain information |
---|
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
---|
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
---|
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases | Back alignment and domain information |
---|
>PRK10476 multidrug resistance protein MdtN; Provisional | Back alignment and domain information |
---|
>PRK11556 multidrug efflux system subunit MdtA; Provisional | Back alignment and domain information |
---|
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional | Back alignment and domain information |
---|
>PRK09859 multidrug efflux system protein MdtE; Provisional | Back alignment and domain information |
---|
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional | Back alignment and domain information |
---|
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases | Back alignment and domain information |
---|
>pfam00529 HlyD HlyD family secretion protein | Back alignment and domain information |
---|
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
---|
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
---|
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family; InterPro: IPR010129 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
---|
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
---|
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
---|
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
---|
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
---|
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
---|
>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds | Back alignment and domain information |
---|
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
---|
>PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
---|
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
---|
>PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
---|
>KOG0238 consensus | Back alignment and domain information |
---|
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase; InterPro: IPR013466 Proteins in this entry are closely related to characterised examples of thymidine phosphorylase (2 | Back alignment and domain information |
---|
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
---|
>PRK05704 dihydrolipoamide succinyltransferase; Validated | Back alignment and domain information |
---|
>PRK07051 hypothetical protein; Validated | Back alignment and domain information |
---|
>PRK03598 hypothetical protein; Provisional | Back alignment and domain information |
---|
>KOG0559 consensus | Back alignment and domain information |
---|
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed | Back alignment and domain information |
---|
>pfam00529 HlyD HlyD family secretion protein | Back alignment and domain information |
---|
>PRK10476 multidrug resistance protein MdtN; Provisional | Back alignment and domain information |
---|
>PRK11556 multidrug efflux system subunit MdtA; Provisional | Back alignment and domain information |
---|
>PRK11578 macrolide transporter subunit MacA; Provisional | Back alignment and domain information |
---|
>pfam07247 AATase Alcohol acetyltransferase | Back alignment and domain information |
---|
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea | Back alignment and domain information |
---|
>pfam00364 Biotin_lipoyl Biotin-requiring enzyme | Back alignment and domain information |
---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 423 | pyruvate dehydrogenase complex dihydrolipoamide acetylt | ||
3duf_I | 428 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 1e-74 | |
1c4t_A | 233 | Catalytic Domain From Trimeric Dihydrolipoamide Suc | 4e-47 | |
1b5s_A | 242 | Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt | 1e-41 | |
3b8k_A | 239 | Structure Of The Truncated Human Dihydrolipoyl Acet | 4e-40 | |
1dpc_A | 243 | Crystallographic And Enzymatic Investigations On Th | 4e-39 | |
1eaa_A | 243 | Atomic Structure Of The Cubic Core Of The Pyruvate | 2e-38 | |
1dpd_A | 243 | Crystallographic And Enzymatic Investigations On Th | 7e-38 | |
1dpb_A | 243 | Crystallographic And Enzymatic Investigations On Th | 5e-36 | |
2ihw_A | 262 | Crystal Structure Of A Cubic Core Of The Dihydrolip | 3e-35 | |
3mae_A | 256 | Crystal Structure Of Probable Dihydrolipamide Acety | 3e-33 | |
3l60_A | 250 | Crystal Structure Of Branched-Chain Alpha-Keto Acid | 1e-34 | |
1zy8_L | 229 | The Crystal Structure Of Dihydrolipoamide Dehydroge | 5e-27 | |
2dnc_A | 98 | Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain | 2e-26 | |
1lab_A | 80 | Three-Dimensional Structure Of The Lipoyl Domain Fr | 1e-25 | |
1y8n_B | 128 | Crystal Structure Of The Pdk3-L2 Complex Length = 1 | 8e-22 | |
1fyc_A | 106 | Inner Lipoyl Domain From Human Pyruvate Dehydrogena | 3e-21 | |
1pmr_A | 80 | Lipoyl Domain From The Dihydrolipoyl Succinyltransf | 4e-21 | |
1ghj_A | 79 | Solution Structure Of The Lipoyl Domain Of The 2- O | 7e-21 | |
2dne_A | 108 | Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain | 1e-20 | |
1k8o_A | 93 | Solution Structure Of The Lipoic Acid-Bearing Domai | 2e-19 | |
3crk_C | 87 | Crystal Structure Of The Pdhk2-L2 Complex. Length = | 6e-19 | |
1qjo_A | 80 | Innermost Lipoyl Domain Of The Pyruvate Dehydrogena | 6e-18 | |
2k7v_A | 85 | Deletions In A Surface Loop Divert The Folding Of A | 4e-16 | |
1iyu_A | 79 | Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nm | 1e-13 | |
1dcz_A | 77 | Biotin Carboxyl Carrier Domain Of Transcarboxylase | 2e-09 | |
1o78_A | 84 | Biotin Carboxyl Carrier Domain Of Transcarboxylase | 3e-09 | |
2d5d_A | 74 | Structure Of Biotin Carboxyl Carrier Protein (74val | 1e-08 | |
1gjx_A | 81 | Solution Structure Of The Lipoyl Domain Of The Chim | 1e-08 | |
3hbl_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 3e-06 | |
3hb9_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 3e-06 | |
3bg5_A | 1173 | Crystal Structure Of Staphylococcus Aureus Pyruvate | 3e-06 | |
3ho8_A | 1150 | Crystal Structure Of S. Aureus Pyruvate Carboxylase | 3e-06 | |
1z6h_A | 72 | Solution Structure Of Bacillus Subtilis Blap Biotin | 5e-05 | |
2qf7_A | 1165 | Crystal Structure Of A Complete Multifunctional Pyr | 6e-05 | |
2jku_A | 94 | Crystal Structure Of The N-Terminal Region Of The B | 2e-04 |
gi|219689228|pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428 | Back alignment and structure |
Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 102/431 (23%), Positives = 182/431 (42%), Gaps = 14/431 (3%) Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 M +P + + EG++ KW + GD+++ D+LCE++ DKA++E S +G + EIL Sbjct: 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60 Query: 62 VPAGTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPI 121 VP GT V ++ + E +E + + + S V Sbjct: 61 VPEGT-VATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAA 119 Query: 122 ASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETL-------ISTKTNVKDYSTIQSFG 174 + + + + I + Sbjct: 120 EAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAE 179 Query: 175 LVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLR 234 A + IR+ IA + SK T PH + + ++ L++ R Sbjct: 180 EKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHR 239 Query: 235 EQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTN--AMIRHKHIDISVA 292 ++ + E K++ ++KA A+ + P N S +I+ + +I +A Sbjct: 240 KK----FKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIA 295 Query: 293 VSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGIN 352 G++ P+I+ AD+K I ++ E+ +LA++A+ KL P E +G + +I+N+G G Sbjct: 296 ADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQ 355 Query: 353 SFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFK 412 F VIN P+ IL IG +K + ++ EI A ++ +LS DHR +DGA A K L K Sbjct: 356 WFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIK 415 Query: 413 EYIENPVWMLM 423 + +P +LM Sbjct: 416 RLLSDPELLLM 426 |
>gi|7245717|pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233 | Back alignment and structure |
>gi|4558102|pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242 | Back alignment and structure |
>gi|166007311|pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239 | Back alignment and structure |
>gi|157830859|pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 | Back alignment and structure |
>gi|157830909|pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243 | Back alignment and structure |
>gi|157830860|pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 | Back alignment and structure |
>gi|157830858|pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 | Back alignment and structure |
>gi|122920622|pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262 | Back alignment and structure |
>gi|293652058|pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256 | Back alignment and structure |
>gi|283135430|pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250 | Back alignment and structure |
>gi|159164247|pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98 | Back alignment and structure |
>gi|157831755|pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80 | Back alignment and structure |
>gi|67463894|pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex Length = 128 | Back alignment and structure |
>gi|159162337|pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Complex, Nmr, 1 Structure Length = 106 | Back alignment and structure |
>gi|157833530|pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80 | Back alignment and structure |
>gi|159162352|pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2- Oxoglutarate Dehydrogenase Complex From Azotobacter Vineland Ii, Nmr, Minimized Average Structure Length = 79 | Back alignment and structure |
>gi|159164248|pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase Length = 108 | Back alignment and structure |
>gi|17942550|pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of The E2 Component Of Human, Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 93 | Back alignment and structure |
>gi|186973095|pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex. Length = 87 | Back alignment and structure |
>gi|157879777|pdb|1QJO|A Chain A, Innermost Lipoyl Domain Of The Pyruvate Dehydrogenase From Escherichia Coli Length = 80 | Back alignment and structure |
>gi|258588181|pdb|2K7V|A Chain A, Deletions In A Surface Loop Divert The Folding Of A Protein Domain Into A Metastable Dimeric Form Length = 85 | Back alignment and structure |
>gi|253722911|pdb|1IYU|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr, Minimized Average Structure Length = 79 | Back alignment and structure |
>gi|159162200|pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc 1.3s) Length = 77 | Back alignment and structure |
>gi|159162771|pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (1.3s) [10-48] Deletion Mutant Length = 84 | Back alignment and structure |
>gi|99032022|pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start) From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii Length = 74 | Back alignment and structure |
>gi|157877760|pdb|1GJX|A Chain A, Solution Structure Of The Lipoyl Domain Of The Chimeric Dihydrolipoyl Dehydrogenase P64k From Neisseria Meningitidis Length = 81 | Back alignment and structure |
>gi|242556622|pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a Mutant Length = 1150 | Back alignment and structure |
>gi|242556615|pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t Mutant Length = 1150 | Back alignment and structure |
>gi|168988872|pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate Carboxylase Length = 1173 | Back alignment and structure |
gi|242556707|pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In Complex With Coenzyme A Length = 1150 | Back alignment and structure |
>gi|93278527|pdb|1Z6H|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated- Form Length = 72 | Back alignment and structure |
>gi|158430175|pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli Length = 1165 | Back alignment and structure |
>gi|198443038|pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin Acceptor Domain Of Human Propionyl-Coa Carboxylase Length = 94 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 423 | pyruvate dehydrogenase complex dihydrolipoamide acetylt | ||
3dva_I | 428 | Dihydrolipoyllysine-residue acetyltransferase component | 1e-102 | |
3mae_A | 256 | 2-oxoisovalerate dehydrogenase E2 component, dihydrolip | 3e-58 | |
1scz_A | 233 | E2, dihydrolipoamide succinyltransferase; COA-dependent | 1e-57 | |
3l60_A | 250 | Branched-chain alpha-keto acid dehydrogenase; structura | 6e-56 | |
1q23_A | 219 | Chloramphenicol acetyltransferase; CAT I, trimer, fusid | 7e-46 | |
3cla_A | 213 | Type III chloramphenicol acetyltransferase; transferase | 4e-45 | |
3b8k_A | 239 | PDCE2;, dihydrolipoyllysine-residue acetyltransferase; | 1e-42 | |
2i9d_A | 217 | Chloramphenicol acetyltransferase; structural genomics, | 6e-39 | |
1dpb_A | 243 | Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltr | 3e-38 | |
2ii3_A | 262 | Lipoamide acyltransferase component of branched- chain | 5e-35 | |
1zy8_K | 229 | Pyruvate dehydrogenase protein X component, mitochondri | 4e-28 | |
1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase component | 2e-20 | |
3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase component | 2e-18 | |
2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase component | 3e-18 | |
1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehydroge | 2e-17 | |
1pmr_A | 80 | Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehyd | 2e-17 | |
2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic acid | 7e-17 | |
1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase compon | 7e-15 | |
1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, pyru | 2e-13 | |
1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component of py | 2e-12 | |
2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, | 7e-12 | |
1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, | 9e-12 | |
2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, trans | 1e-09 | |
2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase component | 2e-08 | |
2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondrial; l | 4e-08 | |
2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; biotin, do | 8e-08 | |
1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta sheet, | 4e-07 | |
1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structure, b | 5e-07 | |
2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; biotin-r | 3e-06 | |
1zwv_A | 58 | Lipoamide acyltransferase component of branched- chain | 6e-13 | |
2coo_A | 70 | Lipoamide acyltransferase component of branched- chain | 5e-12 | |
1w85_I | 49 | Dihydrolipoyllysine-residue acetyltransferase component | 1e-11 | |
1w4i_A | 62 | Pyruvate dehydrogenase E2; transferase, peripheral-subu | 7e-11 | |
1bal_A | 51 | Dihydrolipoamide succinyltransferase; glycolysis; NMR { | 2e-10 | |
2f60_K | 64 | Pyruvate dehydrogenase protein X component; protein-bin | 2e-10 | |
2eq9_C | 41 | Pyruvate dehydrogenase complex, dihydrolipoamide acetyl | 5e-10 | |
2eq8_C | 40 | Pyruvate dehydrogenase complex, dihydrolipoamide acetyl | 5e-10 | |
2eq7_C | 40 | 2-oxoglutarate dehydrogenase E2 component; protein-prot | 1e-09 |
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428 | Back alignment and structure |
---|
Score = 367 bits (943), Expect = e-102 Identities = 116/435 (26%), Positives = 204/435 (46%), Gaps = 22/435 (5%) Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 M +P + + EG++ KW + GD+++ D+LCE++ DKA++E S +G + EIL Sbjct: 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60 Query: 62 VPAGTENIAVNSPILNILMDSTEIPPSPP-----------LSKENIVEVREEHSHSSPVV 110 VP GT V ++ + E + E + + ++P Sbjct: 61 VPEGTV-ATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAA 119 Query: 111 VREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTI 170 E R IA P R+ A E G+D+ + G+G +GR++K DI+ ++ + Sbjct: 120 EAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAE 179 Query: 171 QSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNL 230 + + IR+ IA + SK T PH + + ++ L Sbjct: 180 EKAAPAAAKPATT----EGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKL 235 Query: 231 LSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSW--TTNAMIRHKHID 288 ++ R++ K++ ++KA A+ + P N S T +I+ + + Sbjct: 236 VAHRKKFKAIAAEKG----IKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYN 291 Query: 289 ISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGM 348 I +A G++ P+I+ AD+K I ++ E+ +LA++A+ KL P E +G + +I+N+G Sbjct: 292 IGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGS 351 Query: 349 LGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLL 408 G F VIN P+ IL IG +K + ++ EI A ++ +LS DHR +DGA A K L Sbjct: 352 AGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKAL 411 Query: 409 AKFKEYIENPVWMLM 423 K + +P +LM Sbjct: 412 NHIKRLLSDPELLLM 426 |
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256 | Back alignment and structure |
---|
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 layers); 2.20A {Escherichia coli K12} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233 | Back alignment and structure |
---|
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250 | Back alignment and structure |
---|
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* Length = 219 | Back alignment and structure |
---|
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213 | Back alignment and structure |
---|
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239 | Back alignment and structure |
---|
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- 2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} Length = 217 | Back alignment and structure |
---|
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243 | Back alignment and structure |
---|
>2ii3_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262 | Back alignment and structure |
---|
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128 | Back alignment and structure |
---|
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87 | Back alignment and structure |
---|
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
---|
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93 | Back alignment and structure |
---|
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 | Back alignment and structure |
---|
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 | Back alignment and structure |
---|
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79 | Back alignment and structure |
---|
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 | Back alignment and structure |
---|
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79 | Back alignment and structure |
---|
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
---|
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81 | Back alignment and structure |
---|
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
---|
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85 | Back alignment and structure |
---|
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, polymorphism, disease mutation, nucleotide-binding; HET: PG4; 1.5A {Homo sapiens} Length = 94 | Back alignment and structure |
---|
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74 | Back alignment and structure |
---|
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77 | Back alignment and structure |
---|
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72 | Back alignment and structure |
---|
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
---|
>1zwv_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; subunit binding domain; NMR {Homo sapiens} Length = 58 | Back alignment and structure |
---|
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
---|
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49 | Back alignment and structure |
---|
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62 | Back alignment and structure |
---|
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2btg_A 2bth_A 2cyu_A Length = 51 | Back alignment and structure |
---|
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Length = 64 | Back alignment and structure |
---|
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltranferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus HB8} Length = 41 | Back alignment and structure |
---|
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus HB8} Length = 40 | Back alignment and structure |
---|
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase, structural genomics, NPPSFA; HET: FAD NAD; 1.80A {Thermus thermophilus HB8} Length = 40 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 423 | pyruvate dehydrogenase complex dihydrolipoamide acetylt | ||
3dva_I | 428 | Dihydrolipoyllysine-residue acetyltransferase component | 100.0 | |
1dpb_A | 243 | Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltr | 100.0 | |
1scz_A | 233 | E2, dihydrolipoamide succinyltransferase; COA-dependent | 100.0 | |
3mae_A | 256 | 2-oxoisovalerate dehydrogenase E2 component, dihydrolip | 100.0 | |
2ii3_A | 262 | Lipoamide acyltransferase component of branched- chain | 100.0 | |
3b8k_A | 239 | PDCE2;, dihydrolipoyllysine-residue acetyltransferase; | 100.0 | |
3l60_A | 250 | Branched-chain alpha-keto acid dehydrogenase; structura | 100.0 | |
3cla_A | 213 | Type III chloramphenicol acetyltransferase; transferase | 100.0 | |
1q23_A | 219 | Chloramphenicol acetyltransferase; CAT I, trimer, fusid | 100.0 | |
2i9d_A | 217 | Chloramphenicol acetyltransferase; structural genomics, | 100.0 | |
1zy8_K | 229 | Pyruvate dehydrogenase protein X component, mitochondri | 100.0 | |
1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase component | 99.92 | |
2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase component | 99.92 | |
3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase component | 99.89 | |
2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic acid | 99.89 | |
1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase compon | 99.86 | |
1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehydroge | 99.83 | |
1pmr_A | 80 | Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehyd | 99.81 | |
1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, pyru | 99.79 | |
1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, | 99.76 | |
1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component of py | 99.7 | |
2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase component | 99.64 | |
2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; biotin-r | 99.58 | |
2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, trans | 99.52 | |
1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structure, b | 99.49 | |
2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; biotin, do | 99.48 | |
2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, | 99.45 | |
1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta sheet, | 99.41 | |
2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondrial; l | 99.39 | |
1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, f | 99.11 | |
2k32_A | 116 | A; NMR {Campylobacter jejuni} PDB: 2k33_A* | 98.04 | |
1hpc_A | 131 | H protein of the glycine cleavage system; transit pepti | 97.33 | |
1onl_A | 128 | Glycine cleavage system H protein; hybrid barrel-sandwi | 97.32 | |
3mxu_A | 143 | Glycine cleavage system H protein; seattle structural g | 97.28 | |
3hgb_A | 155 | Glycine cleavage system H protein; ssgcid, niaid, decod | 97.27 | |
1zko_A | 136 | Glycine cleavage system H protein; TM0212, structural g | 97.25 | |
3klr_A | 125 | Glycine cleavage system H protein; antiparallel beta sh | 97.24 | |
3a7l_A | 128 | H-protein, glycine cleavage system H protein; lipoic ac | 97.22 | |
3h9i_A | 407 | Cation efflux system protein CUSB; three-helix bundle, | 96.86 | |
1vf7_A | 369 | Multidrug resistance protein MEXA; alpha hairpin, beta | 94.63 | |
3fpp_A | 341 | Macrolide-specific efflux protein MACA; hexameric assem | 94.55 | |
2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi-funct | 92.23 | |
2coo_A | 70 | Lipoamide acyltransferase component of branched- chain | 99.25 | |
1w4i_A | 62 | Pyruvate dehydrogenase E2; transferase, peripheral-subu | 99.18 | |
1zwv_A | 58 | Lipoamide acyltransferase component of branched- chain | 99.12 | |
1w85_I | 49 | Dihydrolipoyllysine-residue acetyltransferase component | 99.11 | |
2eq9_C | 41 | Pyruvate dehydrogenase complex, dihydrolipoamide acetyl | 99.05 | |
2f60_K | 64 | Pyruvate dehydrogenase protein X component; protein-bin | 99.03 | |
1bal_A | 51 | Dihydrolipoamide succinyltransferase; glycolysis; NMR { | 99.03 | |
2eq7_C | 40 | 2-oxoglutarate dehydrogenase E2 component; protein-prot | 99.0 | |
2eq8_C | 40 | Pyruvate dehydrogenase complex, dihydrolipoamide acetyl | 98.94 | |
3cdx_A | 354 | Succinylglutamatedesuccinylase/aspartoacylase; structur | 96.88 | |
3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein compl | 99.13 | |
2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi-funct | 99.0 | |
3fpp_A | 341 | Macrolide-specific efflux protein MACA; hexameric assem | 93.17 | |
2f1m_A | 277 | Acriflavine resistance protein A; helical hairpin, lipo | 92.1 | |
3lnn_A | 359 | Membrane fusion protein (MFP-RND) heavy metal CAT trico | 92.08 | |
1vf7_A | 369 | Multidrug resistance protein MEXA; alpha hairpin, beta | 90.68 | |
3dva_I | 428 | Dihydrolipoyllysine-residue acetyltransferase component | 90.57 | |
3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-bi | 98.85 | |
3lnn_A | 359 | Membrane fusion protein (MFP-RND) heavy metal CAT trico | 97.09 | |
1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehydroge | 96.36 | |
1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta sheet, | 95.52 | |
2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, | 95.52 | |
2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, trans | 95.45 | |
2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; biotin-r | 95.23 | |
2f1m_A | 277 | Acriflavine resistance protein A; helical hairpin, lipo | 95.19 | |
1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, f | 95.09 | |
2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; biotin, do | 94.98 | |
1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component of py | 94.93 | |
1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structure, b | 94.76 | |
1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, pyru | 94.69 | |
2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase component | 94.41 | |
1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase compon | 93.8 | |
2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondrial; l | 93.56 | |
3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; | 92.55 | |
2k32_A | 116 | A; NMR {Campylobacter jejuni} PDB: 2k33_A* | 92.5 | |
2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic acid | 92.39 | |
1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase component | 92.18 | |
2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase component |