HHsearch alignment for GI: 254780674 and conserved domain: TIGR00998

>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds. EmrB encodes a highly hydrophobic 56.2-kDa peptide, with 14 potential alpha-helices to span the inner membrane. EmrA encodes a putative 42.7-kDa peptide containing a single hydrophobic domain and a large C-terminal hydrophilic domain.; GO: 0015238 drug transporter activity, 0006855 multidrug transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=92.47  E-value=0.17  Score=29.76  Aligned_cols=36  Identities=11%  Similarity=0.149  Sum_probs=31.4

Q ss_pred             EEEEC-CCCCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf             24536-87868999992488604035855999970754
Q gi|254780674|r   47 MEFES-VDEGIIDEILVPAGTENIAVNSPILNILMDST   83 (423)
Q Consensus        47 ~ev~S-~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~   83 (423)
T Consensus        43 ~~v~sF~VsG~v~~v~~~d~-d~Vk~GD~Lv~LD~t~a   79 (379)
T TIGR00998        43 LQVSSFQVSGSVIEVNVDDT-DYVKQGDVLVRLDPTDA   79 (379)
T ss_pred             EEEEEEEEEEEEEEEEECCC-CCCEECCEEEEECCCHH
T ss_conf             02324657324899974378-84203115667677168