HHsearch alignment for GI: 254780674 and conserved domain: TIGR00998
>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds. EmrB encodes a highly hydrophobic 56.2-kDa peptide, with 14 potential alpha-helices to span the inner membrane. EmrA encodes a putative 42.7-kDa peptide containing a single hydrophobic domain and a large C-terminal hydrophilic domain.; GO: 0015238 drug transporter activity, 0006855 multidrug transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=92.47 E-value=0.17 Score=29.76 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=31.4
Q ss_pred EEEEC-CCCCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 24536-87868999992488604035855999970754
Q gi|254780674|r 47 MEFES-VDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 47 ~ev~S-~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
T Consensus 43 ~~v~sF~VsG~v~~v~~~d~-d~Vk~GD~Lv~LD~t~a 79 (379)
T TIGR00998 43 LQVSSFQVSGSVIEVNVDDT-DYVKQGDVLVRLDPTDA 79 (379)
T ss_pred EEEEEEEEEEEEEEEEECCC-CCCEECCEEEEECCCHH
T ss_conf 02324657324899974378-84203115667677168