Query gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 423 No_of_seqs 158 out of 6238 Neff 7.7 Searched_HMMs 23785 Date Tue May 31 18:33:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780674.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3dva_I Dihydrolipoyllysine-res 100.0 0 0 874.5 1.0 413 2-423 1-426 (428) 2 1dpb_A Dihydrolipoyl-transacet 100.0 0 0 536.2 16.1 232 188-423 10-243 (243) 3 1scz_A E2, dihydrolipoamide su 100.0 0 0 533.5 13.8 230 191-423 2-231 (233) 4 3mae_A 2-oxoisovalerate dehydr 100.0 0 0 522.5 12.9 231 190-423 15-248 (256) 5 2ii3_A Lipoamide acyltransfera 100.0 0 0 515.0 16.4 229 190-423 28-259 (262) 6 3b8k_A PDCE2;, dihydrolipoylly 100.0 0 0 518.1 11.1 228 191-423 10-239 (239) 7 3l60_A Branched-chain alpha-ke 100.0 0 0 497.1 15.2 224 192-423 13-240 (250) 8 3cla_A Type III chloramphenico 100.0 7.2E-43 0 305.0 14.0 204 194-420 4-213 (213) 9 1q23_A Chloramphenicol acetylt 100.0 4.8E-42 0 299.5 11.6 208 191-418 6-215 (219) 10 1zy8_K Pyruvate dehydrogenase 100.0 5.5E-44 0 312.4 0.5 212 3-224 3-223 (229) 11 2i9d_A Chloramphenicol acetylt 100.0 1.5E-40 7E-45 289.4 13.5 193 201-416 14-217 (217) 12 1y8o_B Dihydrolipoyllysine-res 99.9 2.6E-25 1.1E-29 187.5 11.2 84 3-86 27-110 (128) 13 2dne_A Dihydrolipoyllysine-res 99.9 2.3E-25 9.8E-30 187.9 8.8 85 1-85 5-89 (108) 14 3crk_C Dihydrolipoyllysine-res 99.9 4E-23 1.7E-27 173.0 10.9 83 2-84 4-86 (87) 15 2dnc_A Pyruvate dehydrogenase 99.9 3.4E-23 1.4E-27 173.4 10.0 86 1-86 5-90 (98) 16 1ghj_A E2, E2, the dihydrolipo 99.9 5.7E-22 2.4E-26 165.2 7.9 79 3-82 1-79 (79) 17 1k8m_A E2 component of branche 99.8 1.1E-20 4.5E-25 156.7 9.5 81 3-84 4-84 (93) 18 1pmr_A Dihydrolipoyl succinylt 99.8 7.9E-22 3.3E-26 164.3 -0.9 77 3-80 2-78 (80) 19 1qjo_A Dihydrolipoamide acetyl 99.8 1.7E-19 7.2E-24 148.6 8.2 79 2-83 1-79 (80) 20 1gjx_A Pyruvate dehydrogenase; 99.8 1.8E-19 7.6E-24 148.5 4.1 80 2-83 1-80 (81) 21 1iyu_A E2P, dihydrolipoamide a 99.7 1.1E-16 4.7E-21 129.8 10.5 76 4-83 2-77 (79) 22 2k7v_A Dihydrolipoyllysine-res 99.6 1.9E-17 8.2E-22 134.9 1.4 76 2-84 1-76 (85) 23 2ejm_A Methylcrotonoyl-COA car 99.6 4.1E-15 1.7E-19 119.4 7.8 66 17-83 22-87 (99) 24 2dn8_A Acetyl-COA carboxylase 99.5 1.9E-14 7.9E-19 114.9 7.5 73 8-82 16-88 (100) 25 1z6h_A Biotin/lipoyl attachmen 99.5 6.7E-14 2.8E-18 111.3 7.9 64 18-82 8-71 (72) 26 2d5d_A Methylmalonyl-COA decar 99.5 9.3E-14 3.9E-18 110.3 8.3 60 18-78 14-73 (74) 27 2kcc_A Acetyl-COA carboxylase 99.4 7.2E-14 3E-18 111.0 5.7 68 15-84 11-78 (84) 28 1dcz_A Transcarboxylase 1.3S s 99.4 3.9E-13 1.6E-17 106.1 7.5 60 18-78 17-76 (77) 29 2jku_A Propionyl-COA carboxyla 99.4 6.6E-14 2.8E-18 111.3 2.1 75 4-79 16-94 (94) 30 2coo_A Lipoamide acyltransfera 99.2 1.3E-12 5.6E-17 102.5 2.2 52 114-165 10-61 (70) 31 1w4i_A Pyruvate dehydrogenase 99.2 3.6E-12 1.5E-16 99.7 1.5 47 117-163 2-48 (62) 32 3n6r_A Propionyl-COA carboxyla 99.1 1.7E-10 7.1E-15 88.5 8.3 14 141-154 331-344 (681) 33 1zwv_A Lipoamide acyltransfera 99.1 8E-12 3.3E-16 97.4 1.0 47 116-162 4-50 (58) 34 1w85_I Dihydrolipoyllysine-res 99.1 8.4E-12 3.5E-16 97.2 0.9 46 116-161 3-48 (49) 35 1bdo_A Acetyl-COA carboxylase; 99.1 8.4E-11 3.5E-15 90.5 5.9 58 21-79 23-80 (80) 36 2eq9_C Pyruvate dehydrogenase 99.0 2.4E-11 1E-15 94.1 1.1 40 120-159 1-40 (41) 37 2f60_K Pyruvate dehydrogenase 99.0 2.5E-11 1E-15 94.1 0.5 48 116-163 6-53 (64) 38 1bal_A Dihydrolipoamide succin 99.0 4.3E-11 1.8E-15 92.5 1.7 45 116-160 6-50 (51) 39 2qf7_A Pyruvate carboxylase pr 99.0 3.2E-10 1.3E-14 86.7 5.2 16 26-41 236-251 (1165) 40 2eq7_C 2-oxoglutarate dehydrog 99.0 3.9E-11 1.6E-15 92.8 0.4 39 121-159 1-39 (40) 41 2eq8_C Pyruvate dehydrogenase 98.9 1.1E-10 4.5E-15 89.8 0.8 38 122-159 2-39 (40) 42 3bg3_A Pyruvate carboxylase, m 98.8 8.1E-10 3.4E-14 83.9 2.8 20 307-326 366-385 (718) 43 2k32_A A; NMR {Campylobacter j 98.0 7E-06 2.9E-10 57.6 5.9 62 17-79 9-100 (116) 44 1hpc_A H protein of the glycin 97.3 0.00025 1.1E-08 47.2 5.1 42 19-61 39-80 (131) 45 1onl_A Glycine cleavage system 97.3 0.00029 1.2E-08 46.8 5.3 42 19-61 39-80 (128) 46 3mxu_A Glycine cleavage system 97.3 0.00031 1.3E-08 46.6 5.2 46 18-64 56-101 (143) 47 3hgb_A Glycine cleavage system 97.3 0.00033 1.4E-08 46.4 5.2 42 19-61 62-103 (155) 48 1zko_A Glycine cleavage system 97.2 0.00036 1.5E-08 46.2 5.2 44 19-63 48-91 (136) 49 3klr_A Glycine cleavage system 97.2 0.00037 1.6E-08 46.1 5.2 45 19-64 35-79 (125) 50 3a7l_A H-protein, glycine clea 97.2 0.00041 1.7E-08 45.8 5.2 47 17-64 38-84 (128) 51 3lnn_A Membrane fusion protein 97.1 0.0011 4.8E-08 42.8 6.4 43 38-81 48-91 (359) 52 3cdx_A Succinylglutamatedesucc 96.9 0.0044 1.8E-07 38.9 7.9 17 134-150 111-127 (354) 53 3h9i_A Cation efflux system pr 96.9 0.00035 1.5E-08 46.2 2.2 55 25-80 99-155 (407) 54 1k8m_A E2 component of branche 96.4 0.0029 1.2E-07 40.1 4.1 31 53-84 17-47 (93) 55 1dcz_A Transcarboxylase 1.3S s 95.5 0.015 6.4E-07 35.3 4.7 40 45-85 7-46 (77) 56 2kcc_A Acetyl-COA carboxylase 95.5 0.011 4.5E-07 36.3 3.9 42 41-85 2-43 (84) 57 2dn8_A Acetyl-COA carboxylase 95.5 0.017 7.3E-07 34.9 4.8 38 47-85 18-55 (100) 58 2ejm_A Methylcrotonoyl-COA car 95.2 0.018 7.4E-07 34.9 4.2 43 42-85 10-52 (99) 59 2f1m_A Acriflavine resistance 95.2 0.0083 3.5E-07 37.1 2.5 36 45-81 21-56 (277) 60 1bdo_A Acetyl-COA carboxylase; 95.1 0.015 6.5E-07 35.2 3.6 36 48-84 6-48 (80) 61 2d5d_A Methylmalonyl-COA decar 95.0 0.024 9.9E-07 34.0 4.3 38 47-85 6-43 (74) 62 1iyu_A E2P, dihydrolipoamide a 94.9 0.014 5.8E-07 35.6 3.0 32 53-85 11-42 (79) 63 1z6h_A Biotin/lipoyl attachmen 94.8 0.029 1.2E-06 33.4 4.3 35 49-84 2-36 (72) 64 1qjo_A Dihydrolipoamide acetyl 94.7 0.015 6.2E-07 35.4 2.6 32 53-85 13-44 (80) 65 1vf7_A Multidrug resistance pr 94.6 0.014 5.8E-07 35.6 2.4 54 25-80 23-76 (369) 66 3fpp_A Macrolide-specific effl 94.6 0.025 1E-06 33.9 3.5 54 26-81 12-65 (341) 67 2k7v_A Dihydrolipoyllysine-res 94.4 0.01 4.3E-07 36.5 1.3 36 47-83 3-38 (85) 68 1ghj_A E2, E2, the dihydrolipo 93.8 0.043 1.8E-06 32.3 3.5 35 51-86 12-46 (79) 69 2jku_A Propionyl-COA carboxyla 93.6 0.034 1.4E-06 33.0 2.6 37 48-85 27-63 (94) 70 3fpp_A Macrolide-specific effl 93.2 0.1 4.3E-06 29.7 4.6 31 16-46 38-68 (341) 71 3hbl_A Pyruvate carboxylase; T 92.5 0.15 6.3E-06 28.6 4.7 44 48-92 1079-1122(1150) 72 2k32_A A; NMR {Campylobacter j 92.5 0.13 5.5E-06 29.0 4.4 34 47-81 2-35 (116) 73 2dnc_A Pyruvate dehydrogenase 92.4 0.068 2.8E-06 31.0 2.8 33 52-85 19-51 (98) 74 2qf7_A Pyruvate carboxylase pr 92.2 0.056 2.4E-06 31.5 2.2 42 17-63 378-419 (1165) 75 1y8o_B Dihydrolipoyllysine-res 92.2 0.1 4.3E-06 29.8 3.5 34 51-85 38-71 (128) 76 2f1m_A Acriflavine resistance 92.1 0.078 3.3E-06 30.6 2.8 29 16-44 29-57 (277) 77 3lnn_A Membrane fusion protein 92.1 0.22 9.3E-06 27.5 5.1 28 16-43 64-91 (359) 78 2dne_A Dihydrolipoyllysine-res 91.8 0.086 3.6E-06 30.3 2.8 34 51-85 18-51 (108) 79 1gjx_A Pyruvate dehydrogenase; 91.8 0.016 6.9E-07 35.1 -1.0 33 52-85 13-45 (81) 80 3crk_C Dihydrolipoyllysine-res 91.8 0.12 5.1E-06 29.3 3.4 32 53-85 18-49 (87) 81 2gpr_A Glucose-permease IIA co 91.5 0.19 8.1E-06 27.9 4.3 34 47-81 8-44 (154) 82 1vf7_A Multidrug resistance pr 90.7 0.14 6E-06 28.8 2.9 28 16-43 50-77 (369) 83 3dva_I Dihydrolipoyllysine-res 90.6 0.039 1.7E-06 32.5 0.0 28 16-43 52-79 (428) 84 1zy8_K Pyruvate dehydrogenase 90.0 0.046 2E-06 32.1 0.0 35 50-85 13-47 (229) 85 3d4r_A Domain of unknown funct 88.9 0.55 2.3E-05 24.9 4.8 41 18-58 109-150 (169) 86 1ax3_A Iiaglc, glucose permeas 87.1 0.57 2.4E-05 24.8 4.0 36 45-82 11-50 (162) 87 3paj_A Nicotinate-nucleotide p 86.4 0.42 1.8E-05 25.7 3.0 52 306-373 256-307 (320) 88 1f3z_A EIIA-GLC, glucose-speci 84.0 0.56 2.3E-05 24.8 2.7 38 44-82 10-50 (161) 89 2jbm_A Nicotinate-nucleotide p 83.6 0.57 2.4E-05 24.8 2.6 77 306-407 222-298 (299) 90 1pmr_A Dihydrolipoyl succinylt 83.5 0.12 4.9E-06 29.4 -1.0 33 52-85 14-46 (80) 91 1qpo_A Quinolinate acid phosph 83.4 0.92 3.9E-05 23.4 3.6 25 58-83 73-97 (284) 92 1x1o_A Nicotinate-nucleotide p 82.7 0.77 3.2E-05 23.9 3.0 38 306-350 221-258 (286) 93 2b7n_A Probable nicotinate-nuc 82.6 1 4.4E-05 23.0 3.6 25 58-83 60-84 (273) 94 3gnn_A Nicotinate-nucleotide p 81.7 0.88 3.7E-05 23.5 3.0 25 58-83 88-112 (298) 95 1qap_A Quinolinic acid phospho 81.0 0.99 4.1E-05 23.2 3.0 52 306-373 233-284 (296) 96 2auk_A DNA-directed RNA polyme 80.8 1.6 6.9E-05 21.7 4.1 34 23-58 64-97 (190) 97 1o4u_A Type II quinolic acid p 80.4 0.9 3.8E-05 23.4 2.7 25 58-83 73-97 (285) 98 3l0g_A Nicotinate-nucleotide p 78.1 1.5 6.3E-05 22.0 3.2 54 306-375 232-285 (300) 99 2bgh_A Vinorine synthase; VS, 76.3 2.4 0.0001 20.6 3.8 49 304-352 302-362 (421) 100 2rkv_A Trichothecene 3-O-acety 75.8 2.5 0.00011 20.4 3.8 19 305-323 320-338 (451) 101 1q9j_A PAPA5, polyketide synth 63.9 5.4 0.00023 18.2 3.4 99 250-352 233-353 (422) 102 3c2e_A Nicotinate-nucleotide p 62.3 3.8 0.00016 19.3 2.4 57 306-373 224-281 (294) 103 2e1v_A Acyl transferase; BAHD 60.2 7.6 0.00032 17.2 4.0 18 400-417 435-452 (454) 104 2hsi_A Putative peptidase M23; 56.9 5.1 0.00021 18.4 2.3 13 286-298 178-190 (282) 105 2gu1_A Zinc peptidase; alpha/b 55.0 5.8 0.00025 18.0 2.3 19 396-414 333-351 (361) 106 2i14_A Nicotinate-nucleotide p 48.4 7.7 0.00033 17.2 2.1 22 60-82 80-101 (395) 107 1l5a_A Amide synthase, VIBH; n 44.3 13 0.00057 15.6 8.6 34 388-421 374-411 (436) 108 3fot_A 15-O-acetyltransferase; 35.1 19 0.00078 14.6 10.1 33 386-418 485-517 (519) 109 1hcz_A Cytochrome F; electron 25.9 12 0.00049 16.0 -0.0 21 356-378 226-246 (252) 110 3nyy_A Putative glycyl-glycine 23.4 29 0.0012 13.3 1.9 18 258-275 83-100 (252) No 1 >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Probab=100.00 E-value=0 Score=874.48 Aligned_cols=413 Identities=28% Similarity=0.469 Sum_probs=353.1 Q ss_pred CCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC Q ss_conf 63478678878872179999998168978527985999952653124536878689999924886040358559999707 Q gi|254780674|r 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423) Q Consensus 2 m~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423) |.++|+||+|||||+||+|++|||++||.|++||+||||||||++||||||++|+|.+|++++| |+++||++|+.|+.+ T Consensus 1 M~~ei~mP~lg~~~~eg~i~~W~~~~Gd~V~~gd~l~evETDKa~~ev~s~~~G~l~~i~~~~G-~~v~vG~~i~~i~~~ 79 (428) T 3dva_I 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG-TVATVGQTLITLDAP 79 (428) T ss_dssp -------------------------------------------------------------------------------- T ss_pred CCCEEECCCCCCCCEEEEEEEEEECCCCEECCCCEEEEEECCCEEEEECCCCCEEEEEEEECCC-CEEECCCEEEEEECC T ss_conf 9932367999998406999999928999858999199998487607974689979999984899-998079989999557 Q ss_pred CCCCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 54211111222100011-----------1112222233322222222222234322101111000001101234433222 Q gi|254780674|r 82 STEIPPSPPLSKENIVE-----------VREEHSHSSPVVVREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIV 150 (423) Q Consensus 82 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRIt 150 (423) +++....+......... .................+..++++||+||++|+|+||||++|.||||+|||+ T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~asP~aRklA~e~gIdl~~I~gtG~~GRIt 159 (428) T 3dva_I 80 GYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVL 159 (428) T ss_dssp ------------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCC T ss_conf 76433221112111123222233222344444576655333456765655679167899988299977777889998435 Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCH Q ss_conf 10024443200010001112211124444455546543456624655111221101110001232100000122233204 Q gi|254780674|r 151 KSDIETLISTKTNVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNL 230 (423) Q Consensus 151 k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l 230 (423) ++||++|+.+................ .............+++||++|||+||+||++||+++||+|++.++|+++| T Consensus 160 k~DV~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ls~~Rk~iA~rm~~S~~tip~~t~~~evdvt~l 235 (428) T 3dva_I 160 KEDIDAFLAGGAKPAPAAAEEKAAPA----AAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKL 235 (428) T ss_dssp TTTTTTTSCC---------------------------------------------------------------------- T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEEEEEHHH T ss_conf 67788876501466543322235554----45665665568740433508889888766532412763667778970479 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC--CCCCEECCCCCCCEEEEECCCCCCEEEECCC Q ss_conf 67877756655543201466554322210111001100000000112--3441012556654156514642020341455 Q gi|254780674|r 231 LSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWT--TNAMIRHKHIDISVAVSIPGGIVTPIIRQAD 308 (423) Q Consensus 231 ~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~--~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad 308 (423) +++|++++..+ ...+.|+||++||+||+++||++||.+|++|+ ++.+++|+++|||||||+++||+|||||||| T Consensus 236 ~~~r~~~~~~~----~~~~~klt~~~~likA~a~AL~~~P~~Nas~~~~~~~i~~~~~vnigiAv~~~~GLivPVIk~a~ 311 (428) T 3dva_I 236 VAHRKKFKAIA----AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHAD 311 (428) T ss_dssp -------------------------------------------------------------------------------- T ss_pred HHHHHHHHHHH----HCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCEEEEEECCCCCCCCCEECCC T ss_conf 99999999875----33466345599999999999874802160794588815541555358898459970343030556 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEE Q ss_conf 47989999987666543102334610037723898515321422101311588716898446312358778937895488 Q gi|254780674|r 309 QKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIM 388 (423) Q Consensus 309 ~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~ 388 (423) +|+|.+|++++++|++|||+|+|+++||+||||||||+|+||+++|||||||||+||||||+++++|++.+|+|.+|++| T Consensus 312 ~~~l~~i~~~~~~l~~~ar~~~l~~~dl~ggTfTiSNlG~~G~~~~tpii~ppq~aIL~vG~i~~~pv~~~g~i~~~~~~ 391 (428) T 3dva_I 312 RKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPML 391 (428) T ss_dssp -------------------------------------------------------------------------------- T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCCCCCEEEECCCCCCCEEEEECCCCEEEEEEECCEEEEEEEE T ss_conf 49999999999999999983999979908963799777656653577542689669997564446768889978898799 Q ss_pred EEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC Q ss_conf 98985200114028899999999998719889719 Q gi|254780674|r 389 NATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423) Q Consensus 389 ~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423) +||||||||+|||++||+||++|+++||||++||| T Consensus 392 ~lsls~DHRvidGa~aa~Fl~~l~~~le~P~~lll 426 (428) T 3dva_I 392 ALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 426 (428) T ss_dssp ----------------------------------- T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHH T ss_conf 99998516011639999999999998759898850 No 2 >1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Probab=100.00 E-value=0 Score=536.25 Aligned_cols=232 Identities=27% Similarity=0.463 Sum_probs=221.8 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH Q ss_conf 34566246551112211011100012321000001222332046787775665554320146655432221011100110 Q gi|254780674|r 188 FAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMI 267 (423) Q Consensus 188 ~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~ 267 (423) ...+..+++|+++|||+||++|++||+++||||++.|+|+++|+++|++++... ++.+.|+|+++||+||++.||+ T Consensus 10 ~~~g~~e~v~ls~~rk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~r~~l~~~~----~~~~~klt~~~~likA~a~aL~ 85 (243) T 1dpb_A 10 AKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVA----EKAGVKLTVLPLLLKACAYLLK 85 (243) T ss_dssp GGSSCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHH----HHTTCCCCSHHHHHHHHHHHHH T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHCC----CCCCCCCCHHHHHHHHHHHHHH T ss_conf 358971798883999999999998720698799999997556899876542001----1358634389999999999986 Q ss_pred HCCCCCCCCCCC--CCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC Q ss_conf 000000011234--410125566541565146420203414554798999998766654310233461003772389851 Q gi|254780674|r 268 QVPEANVSWTTN--AMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISN 345 (423) Q Consensus 268 ~~P~~Na~~~~~--~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSN 345 (423) +||.+|++|+++ .+.+++++||||||++++||+||||||||++|+.+|++++++|++|||+|+|+++|++|||||||| T Consensus 86 ~~P~~Na~~~~~~~~~~~~~~inigiAv~~~~GL~vPVIk~a~~~sl~eia~~i~~l~~~ar~~~l~~~d~~ggTfTisN 165 (243) T 1dpb_A 86 ELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISS 165 (243) T ss_dssp HSGGGGEEECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEE T ss_pred HCHHHHCEECCCCCEEEEECCEEEEEECCCCCCCCCCEECCHHHCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEC T ss_conf 48463231758998999963445774023678840564756222799999999999999987389885442895697445 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC Q ss_conf 532142210131158871689844631235877893789548898985200114028899999999998719889719 Q gi|254780674|r 346 MGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423) Q Consensus 346 lG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423) +|+||+.+|+|||||||+||||+|+++++|++++|++++|++|+||||||||+|||++||+||++|+++||||++||| T Consensus 166 lG~~G~~~~tpiInppq~aILgvG~i~~~pv~~~g~i~~r~~m~ltls~DHRvidGa~aa~FL~~l~~~lE~P~~lll 243 (243) T 1dpb_A 166 LGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243 (243) T ss_dssp CTTTCCSCCCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC T ss_pred CCCCCCEEEEEEECCCCCEEEECCCCEEEEEEECCEEEEEEEEEEEEEEECCHHCHHHHHHHHHHHHHHHHCHHHHHC T ss_conf 888763368841218862021126747888998999899889999998164040589999999999999869997759 No 3 >1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 layers); 2.20A {Escherichia coli K12} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Probab=100.00 E-value=0 Score=533.53 Aligned_cols=230 Identities=30% Similarity=0.503 Sum_probs=223.2 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 66246551112211011100012321000001222332046787775665554320146655432221011100110000 Q gi|254780674|r 191 DSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVP 270 (423) Q Consensus 191 ~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P 270 (423) .+++++|+++|||+||++|++||+++||||++.|||+++|+++|+++++.+. ++.|.|+||++|++||+++||++|| T Consensus 2 ~~ee~ipls~~Rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~---~~~g~~lt~~~~likA~a~aL~~~P 78 (233) T 1scz_A 2 RSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFE---KRHGIRLGFMSFYVKAVVEALKRYP 78 (233) T ss_dssp CSCCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHH---HHHSSCCCSHHHHHHHHHHHHHHCT T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHHHHCH T ss_conf 9874446829999999999987255986999999975999999999887666---5238741489999999999999580 Q ss_pred CCCCCCCCCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCC Q ss_conf 00001123441012556654156514642020341455479899999876665431023346100377238985153214 Q gi|254780674|r 271 EANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLG 350 (423) Q Consensus 271 ~~Na~~~~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g 350 (423) .+|++|+++++.+++++|||+||++++||+||||||||++++.+|++++++|++|||+|+|+++||+||||||||+|+|| T Consensus 79 ~~Na~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~gkL~~~d~~ggTfTISNlG~~G 158 (233) T 1scz_A 79 EVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFG 158 (233) T ss_dssp TTTCEEETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGT T ss_pred HHCCEEECCEEEEECCCCCCCEEECCCCEECCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEECCCCCC T ss_conf 52108938905994443443016617846512252512078999999999999999749999799568718997687667 Q ss_pred CCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC Q ss_conf 2210131158871689844631235877893789548898985200114028899999999998719889719 Q gi|254780674|r 351 INSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423) Q Consensus 351 ~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423) +.+|+|||||||+||||+|+++++|++.+|++++|++|+||||||||+|||++||+||++|+++||||+.||| T Consensus 159 ~~~~tpii~ppq~aIlgvG~i~~~pv~~~g~i~ir~~~~lsls~DHRviDGa~aa~Fl~~l~~~LE~P~~lll 231 (233) T 1scz_A 159 SLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 231 (233) T ss_dssp CCCCCCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHH T ss_pred CCCCCCCCCCCCCEEEEECCCEEECCCCCCEEEEEEEEEEEEEEECCHHCHHHHHHHHHHHHHHHHCHHHHHH T ss_conf 5400366579954598504436454565994899999999988032340539999999999999859898971 No 4 >3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Probab=100.00 E-value=0 Score=522.53 Aligned_cols=231 Identities=31% Similarity=0.507 Sum_probs=222.4 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 56624655111221101110001232100000122233204678777566555432014665543222101110011000 Q gi|254780674|r 190 KDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQV 269 (423) Q Consensus 190 ~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~ 269 (423) ..+++.+|+++|||+||++|++||+++||||++.|||+|+|+++|+++|+.+. ++.+.++|+++|++||+++||++| T Consensus 15 ~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~---~~~g~~~t~~~~~ikAva~aL~~~ 91 (256) T 3mae_A 15 AAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFK---KEEGYSLTYFAFFIKAVAQALKEF 91 (256) T ss_dssp CCSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHH---HHHSSCCCHHHHHHHHHHHHHHHC T ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHHHCC T ss_conf 89984853719999999999997504986999999834769999999988766---541876439999999987776538 Q ss_pred CCCCCCCCCCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC Q ss_conf 00000112344101255665415651464202034145547989999987666543102334610037723898515321 Q gi|254780674|r 270 PEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGML 349 (423) Q Consensus 270 P~~Na~~~~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~ 349 (423) |.+|++|+++.+.+++++|||+||++++||+||||||||+++|.+|++++++|++|||+|+|+++|++||||||||+|+| T Consensus 92 P~~Na~~~~~~i~~~~~vnigiAV~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~kar~~~l~~~d~~ggTfTISNlG~~ 171 (256) T 3mae_A 92 PQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSF 171 (256) T ss_dssp TTTSEEEETTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGG T ss_pred CHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEECCCCC T ss_conf 51101555542110156874689862896486113676659999999999999999984999968967866886437875 Q ss_pred CCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHH---HHC Q ss_conf 42210131158871689844631235877893789548898985200114028899999999998719889---719 Q gi|254780674|r 350 GINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW---MLM 423 (423) Q Consensus 350 g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~---ll~ 423 (423) |+.+|+|||||||+||||+|+++++|++.+|++++|++|+||||||||+|||++||+||++||++||||++ +|| T Consensus 172 g~~~~tpii~ppq~aIlgvG~i~~~pvv~dg~i~~r~~m~lslt~DHRviDGa~Aa~FL~~lk~~LE~p~~~~~~~~ 248 (256) T 3mae_A 172 GSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKENTALY 248 (256) T ss_dssp TCSEEECCCCTTSSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTTCCCC T ss_pred CCEEEEEECCCCCCEEECCCCEEEEEEEECCEEEEEEEEEEEEEEECCHHCCHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 53246653369972164244418888999999899768999898562040739999999999999659986764000 No 5 >2ii3_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Probab=100.00 E-value=0 Score=514.99 Aligned_cols=229 Identities=29% Similarity=0.454 Sum_probs=218.0 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 56624655111221101110001232100000122233204678777566555432014665543222101110011000 Q gi|254780674|r 190 KDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQV 269 (423) Q Consensus 190 ~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~ 269 (423) ....+++|+++|||+||++|++|| ++||||++.|||+|+|+++|+++|+... +.|.|+||++|++||+++||++| T Consensus 28 ~~~~~~~pl~~~rk~ia~~m~~S~-~iPh~~~~~evD~t~l~~~R~~l~~~~~----~~g~klS~~~~likAva~aL~~~ 102 (262) T 2ii3_A 28 IGKDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIAF----ARGIKLSFMPFFLKAASLGLLQF 102 (262) T ss_dssp -CCCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHHHH----HTTCCCCSHHHHHHHHHHHHHHC T ss_pred CCCCEEEECHHHHHHHHHHHHHHH-HCCEEEEEEEEEHHHHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHHHC T ss_conf 898648886499999999999975-2780999999877999999998545555----13983437999999999999849 Q ss_pred CCCCCCCCC--CCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC Q ss_conf 000001123--441012556654156514642020341455479899999876665431023346100377238985153 Q gi|254780674|r 270 PEANVSWTT--NAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMG 347 (423) Q Consensus 270 P~~Na~~~~--~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG 347 (423) |.+|++|++ +.+.++++||||+||++++||+||||||||++++.+|+++++++++|+|+|+|+++|++||||||||+| T Consensus 103 P~~Na~~~~~~~~i~~~~~v~i~iav~~~~GL~vPVI~~a~~~sl~~ia~~~~~l~~~ar~~~L~~~d~~ggTftisnlG 182 (262) T 2ii3_A 103 PILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIG 182 (262) T ss_dssp GGGSEEECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGG T ss_pred CHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC T ss_conf 05122443236636676402434320157773444304654413288999999999998728977545688269952678 Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCEEEEEEE-CCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC Q ss_conf 2142210131158871689844631235877-893789548898985200114028899999999998719889719 Q gi|254780674|r 348 MLGINSFCAVINPPQSTILAIGAGEKKVVFQ-NEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423) Q Consensus 348 ~~g~~~~~pii~~pq~aILgvG~~~~~~~~~-~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423) ++|+.+|+|||||||+||||+|+++++|++. +|++.+|++|+||||||||+|||++||+||++|+++||||+.||| T Consensus 183 ~~g~~~~tpii~ppq~aIlgvG~i~~~pvv~~dg~i~~r~~m~lsls~DHRviDGa~Aa~FL~~l~~~LE~P~~lll 259 (262) T 2ii3_A 183 SIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLL 259 (262) T ss_dssp GTCCSCEECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHH T ss_pred CCCCCEEECCCCCCCCEEEECCCEEEEEEECCCCCEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHC T ss_conf 76541487123488521550465078879857993898348899988013340619999999999999769999860 No 6 >3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Probab=100.00 E-value=0 Score=518.14 Aligned_cols=228 Identities=51% Similarity=0.824 Sum_probs=219.1 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 66246551112211011100012321000001222332046787775665554320146655432221011100110000 Q gi|254780674|r 191 DSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVP 270 (423) Q Consensus 191 ~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P 270 (423) +.++.+|+++|||+||++|++||+++||||++.|||+|+|+++|+++|+.+ +.+.|+|+++|++||+++||++|| T Consensus 10 ~~~~~vpls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~-----~~~~k~s~~~~~ikA~~~al~~~P 84 (239) T 3b8k_A 10 GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKIL-----EGRSKISVNDFIIKASALACLKVP 84 (239) T ss_dssp CSCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHH-----TTSSCCCHHHHHHHHHHHHHHHCC T ss_pred CCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHH-----HCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 983786772999999999999884398799999984289999999977764-----125545601789999999999988 Q ss_pred CCCCCCCCCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCC Q ss_conf 00001123441012556654156514642020341455479899999876665431023346100377238985153214 Q gi|254780674|r 271 EANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLG 350 (423) Q Consensus 271 ~~Na~~~~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g 350 (423) .+|++|+++.+.+++++||||||++++||+|||||+||++++.+|+++++++.+|+|+|+|+++|++||||||||+|+|| T Consensus 85 ~~Na~~~~~~i~~~~~vnigiAV~~~~gL~vPvI~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~dl~ggTfTISNlG~~G 164 (239) T 3b8k_A 85 EANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFG 164 (239) T ss_dssp CSCTTSCCCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSC T ss_pred HHHHCCCCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCCCC T ss_conf 76310356469993132331258738985310698766089899999999999999839999788079528876267754 Q ss_pred CCCCCCCCCCCCEEEEEECCCEEEEEEECC--EEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC Q ss_conf 221013115887168984463123587789--3789548898985200114028899999999998719889719 Q gi|254780674|r 351 INSFCAVINPPQSTILAIGAGEKKVVFQNE--EIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423) Q Consensus 351 ~~~~~pii~~pq~aILgvG~~~~~~~~~~~--~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423) +.+|+|||||||+||||+|+++++|++.++ .+++|++|+||||||||+|||++||+||++|+++||||++||| T Consensus 165 ~~~~tpii~ppq~ail~vG~i~~~pv~~~~~~~i~~r~~m~lslt~DHRviDGa~aa~FL~~l~~~LE~P~~lll 239 (239) T 3b8k_A 165 IKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239 (239) T ss_dssp CSSCCCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC T ss_pred EEEEECCCCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHC T ss_conf 235643667995137215674678899879986799878797688321150689999999999999709887759 No 7 >3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Probab=100.00 E-value=0 Score=497.12 Aligned_cols=224 Identities=25% Similarity=0.450 Sum_probs=215.8 Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 62465511122110111000123210000012223320467877756655543201466554322210111001100000 Q gi|254780674|r 192 SYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPE 271 (423) Q Consensus 192 ~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~ 271 (423) +.+.+|+++|||+||++|++||++|||||++.|+|+|+|+++|+++++ .+.|+|+++|++||+++||++||. T Consensus 13 ~~~~~pl~~~r~~ia~~m~~S~~~iPh~~~~~evd~t~l~~~r~~~~~--------~~~k~s~~~~~ikA~~~aL~~~P~ 84 (250) T 3l60_A 13 GPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS--------AAPEITPFALTLRLLVIALKHNVI 84 (250) T ss_dssp -CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT--------TCTTCCHHHHHHHHHHHHHHHCGG T ss_pred CCCEEECHHHHHHHHHHHHHHHHHCCEEEEEEEEEHHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 974307659999999999998861997999999876999999898765--------255553115379999999984842 Q ss_pred CCCCCCC----CCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC Q ss_conf 0001123----441012556654156514642020341455479899999876665431023346100377238985153 Q gi|254780674|r 272 ANVSWTT----NAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMG 347 (423) Q Consensus 272 ~Na~~~~----~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG 347 (423) +|++|.+ +.+.+++.+||||||++++||+|||||+||+++|.+|++++++|.++||+|+|+++|++||||||||+| T Consensus 85 ~N~~~~~~~~~~~i~~~~~vnIgvAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggtftisnlG 164 (250) T 3l60_A 85 LNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFG 164 (250) T ss_dssp GSEEEECTTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGG T ss_pred CCCCEEECCCCCEEEEECCEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC T ss_conf 37726523688669997544320444678966983581775489999999889999998728978201488339998788 Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC Q ss_conf 2142210131158871689844631235877893789548898985200114028899999999998719889719 Q gi|254780674|r 348 MLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423) Q Consensus 348 ~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423) +||+.+|+|||||||+||||+|+++++|++.+|++++|++|+||||||||+|||++|++||++|+++||||++||| T Consensus 165 ~~g~~~~tpii~ppq~aIl~vG~i~~~pv~~~g~i~~r~~m~lslt~DHRviDGa~aa~FL~~lk~~LE~P~~lLl 240 (250) T 3l60_A 165 ALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALL 240 (250) T ss_dssp GGTCSSCCCCCCTTCSEEEEECCCEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHTT T ss_pred CCCCCEEEECCCCCCCEEEECCCCCEEEEEECCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHH T ss_conf 8773417841469963387415652477888998899789999888525221629999999999999719999997 No 8 >3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Probab=100.00 E-value=7.2e-43 Score=304.98 Aligned_cols=204 Identities=13% Similarity=0.169 Sum_probs=172.4 Q ss_pred EEEEECC-CCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 4655111-221101110001232100000122233204678777566555432014665543222101110011000000 Q gi|254780674|r 194 EVIPHDN-IRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEA 272 (423) Q Consensus 194 ~~vp~s~-irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~ 272 (423) +.+.++. .||...+..+. .+.|||+++.++|+|+|.+++++ .++||+++++||+++||.+||.| T Consensus 4 ~~id~~~w~Rk~~f~~f~~--~~~P~~~it~~vDvt~l~~~~K~-------------~~~sf~~~~l~a~~~Al~~~p~~ 68 (213) T 3cla_A 4 TKFDVKNWVRREHFEFYRH--RLPCGFSLTSKIDITTLKKSLDD-------------SAYKFYPVMIYLIAQAVNQFDEL 68 (213) T ss_dssp EECCCTTCTTHHHHHHHHH--TSCCEEEEEEEEECHHHHHHHHT-------------SSCCHHHHHHHHHHHHHTTCGGG T ss_pred EEECCCCCCCHHHHHHHHC--CCCCEEEEEEEEEHHHHHHHHHH-------------CCCCCHHHHHHHHHHHHHHCHHH T ss_conf 5757566844899999747--99978999989869999999998-------------09985899999999999969586 Q ss_pred CCCCCCCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC-CCCCCCC-CCEEEEECCCCCC Q ss_conf 0011234410125566541565146420203414554798999998766654310233-4610037-7238985153214 Q gi|254780674|r 273 NVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRK-LKPEEYQ-GGTTSISNMGMLG 350 (423) Q Consensus 273 Na~~~~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~-l~~~d~~-ggtftiSNlG~~g 350 (423) |++|+++++++++++|+|+||++++||++|+|++++++++.++++++++++++||+++ +.+++.. ++||||||+|.++ T Consensus 69 n~~~~~~~i~~~~~i~igiav~~~~gl~vp~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~t~~iS~lg~~~ 148 (213) T 3cla_A 69 RMAIKDDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVN 148 (213) T ss_dssp SEEEETTEEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCC T ss_pred HEEEECCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCC T ss_conf 46985998888377475999984898288469348879999999999999999973678886545789889977776756 Q ss_pred CCCCCCCCCCCC---EEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHH Q ss_conf 221013115887---1689844631235877893789548898985200114028899999999998719889 Q gi|254780674|r 351 INSFCAVINPPQ---STILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW 420 (423) Q Consensus 351 ~~~~~pii~~pq---~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ 420 (423) .+.+++.++.++ ..|++.|++.. .++ |.+|++||+||||++||+++|+|++.|+++||||.+ T Consensus 149 ft~i~~~~~~~~~~~~Pii~~Gk~~~----~~~----r~~m~lsl~~dHrvvDG~~~a~Fl~~lk~~le~p~k 213 (213) T 3cla_A 149 FDSFNLNVANFTDYFAPIITMAKYQQ----EGD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNSKLK 213 (213) T ss_dssp CSCCCCCCSCCTTCCSCEEEEECCEE----ETT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTSCCC T ss_pred CCCCCCCCCCCCCCEECEEECCCCEE----ECC----EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 44403577777323427794367488----889----899999999623011729999999999999758379 No 9 >1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* Probab=100.00 E-value=4.8e-42 Score=299.48 Aligned_cols=208 Identities=13% Similarity=0.114 Sum_probs=182.9 Q ss_pred CCCEEEEECC-CCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 6624655111-221101110001232100000122233204678777566555432014665543222101110011000 Q gi|254780674|r 191 DSYEVIPHDN-IRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQV 269 (423) Q Consensus 191 ~~~~~vp~s~-irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~ 269 (423) .+++.+.++. .||...+.... .+.|||+++.++|+|++++++++ .++||+++++||+++||.+| T Consensus 6 ~~~~~Id~~~w~R~~~f~~f~~--~~~P~~~~t~~iDvt~l~~~~k~-------------~~~sf~~~~~~ai~~Al~~~ 70 (219) T 1q23_A 6 TGYTTVDISQWHRKEHFEAFQS--VAQCTYNQTVQLDITAFLKTVKK-------------NKHKFYPAFIHILARLMNAH 70 (219) T ss_dssp CCEEECCGGGCTTHHHHHHHTT--TTCEEEEEEEEEECHHHHHHHHH-------------TTCCHHHHHHHHHHHHHTTC T ss_pred CCCEEECHHHCCHHHHHHHHHC--CCCCEEEEEEEEEHHHHHHHHHH-------------CCCCCHHHHHHHHHHHHHHC T ss_conf 7775876332503999999747--89988999999868999999998-------------29982899999999999859 Q ss_pred CCCCCCCCCCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCCCCCCCCCEEEEECCCC Q ss_conf 000001123441012556654156514642020341455479899999876665431023-3461003772389851532 Q gi|254780674|r 270 PEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQR-KLKPEEYQGGTTSISNMGM 348 (423) Q Consensus 270 P~~Na~~~~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~-~l~~~d~~ggtftiSNlG~ 348 (423) |++|++|+++++.+++++|+|+||++++||++|+|++++++++.++++++.++..+++++ +|.++++.+|||||||+|. T Consensus 71 Pe~n~~~~~~~i~~~~~i~~~~av~~~~~~~~~~i~~~~~~~l~~f~~~~~~~~~~~~~~~~l~~~~~~~~t~~iS~lg~ 150 (219) T 1q23_A 71 PEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPW 150 (219) T ss_dssp GGGSEEEETTEEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTT T ss_pred HHHHEEEECCEEEEECCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC T ss_conf 68648995997899456346888984898698148058889999999999999999972589994103599899984786 Q ss_pred CCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCH Q ss_conf 1422101311588716898446312358778937895488989852001140288999999999987198 Q gi|254780674|r 349 LGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENP 418 (423) Q Consensus 349 ~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P 418 (423) +|.+.+++++++|+.+++++.... ++++.+| |++|+|||+||||++||+++|+||+.|+++||+. T Consensus 151 ~~f~~~~~~~~~~~~~~~p~~~~G-k~~~~~g----r~~mplsl~~dHr~vDG~~aa~Fl~~l~~~le~~ 215 (219) T 1q23_A 151 VSFTSFDLNVANMDNFFAPVFTMG-KYYTQGD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW 215 (219) T ss_dssp CCCSEEEEEESCCTTCCSCEEEEC-CCEEETT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC T ss_pred CCCCCCCCCCCCCHHEEEEEEECC-CEEEECC----EEEEEEEEEEECHHHCCHHHHHHHHHHHHHHHCC T ss_conf 674770478889703089998615-5698999----0999999997401427499999999999998540 No 10 >1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens} Probab=100.00 E-value=5.5e-44 Score=312.43 Aligned_cols=212 Identities=30% Similarity=0.373 Sum_probs=144.8 Q ss_pred CEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC Q ss_conf 34786788788721799999981689785279859999526531245368786899999248860403585599997075 Q gi|254780674|r 3 IHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423) Q Consensus 3 ~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423) ..+|+||+|||+|+||+|++|||++||.|++||+||||||||+++|||||++|+|.+|++++|+++++||.+++.|..++ T Consensus 3 ~iei~~P~lge~~~eg~I~~Wlvk~GD~V~~gd~L~evETDKa~~Ev~ap~~G~l~~i~v~eG~~~v~vg~~i~~i~~~~ 82 (229) T 1zy8_K 3 PIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEG 82 (229) T ss_dssp -------------------------------------------------------------------------------- T ss_pred CEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEEECCEEEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEECCC T ss_conf 66994689999862699989981899997799979999928668999872671798877623752124564102320222 Q ss_pred CCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCH Q ss_conf 42111112221000---------111112222233322222222222234322101111000001101234433222100 Q gi|254780674|r 83 TEIPPSPPLSKENI---------VEVREEHSHSSPVVVREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSD 153 (423) Q Consensus 83 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~D 153 (423) ++............ ...........+.......+..++++||+|||||+|+||||++|.|||++|||+|+| T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~E~gIdl~~V~GTG~~GRItk~D 162 (229) T 1zy8_K 83 EDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKED 162 (229) T ss_dssp -----------------------------------------------CBCHHHHHHHHHTTCCSSSSCCCSTTSCBCHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCEEHHH T ss_conf 33333345643334333344344566666655655443222333332348454556878497763510228999497999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCC Q ss_conf 24443200010001112211124444455546543456624655111221101110001232100000122 Q gi|254780674|r 154 IETLISTKTNVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSID 224 (423) Q Consensus 154 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~e 224 (423) |++|+.++.........+...... ...... ........+.+|+.++..... ..||++.+.| T Consensus 163 V~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~s~~---~~p~~~~t~~ 223 (229) T 1zy8_K 163 ALKLVQLKQTGKITESRPTPAPTA-TPTAPS------PLQATSGPSYPRPVIPPVSTP---GQPNAVGTLE 223 (229) T ss_dssp HHHHHHHHHHC------------------------------------------------------------ T ss_pred HHHHHHHCCCCCCCCCCCCCCCCC-CCCCCC------CCCCCCCCCCCCCCCCCCCCC---CCCCCCEEEE T ss_conf 999986014578777788888877-887878------865667777774356886568---8883654554 No 11 >2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- 2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} Probab=100.00 E-value=1.5e-40 Score=289.42 Aligned_cols=193 Identities=13% Similarity=0.102 Sum_probs=171.5 Q ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC- Q ss_conf 2211011100012321000001222332046787775665554320146655432221011100110000000011234- Q gi|254780674|r 201 IRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTN- 279 (423) Q Consensus 201 irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~~~- 279 (423) .||...+.+... ..|||+++.++|+|+|+++|++ .|+||+++++||+++||.+||+||++|+++ T Consensus 14 ~R~~~f~~f~~~--~~P~~s~t~~iDvt~l~~~~k~-------------~k~sf~~~l~~av~~al~~~Pe~n~~~~~d~ 78 (217) T 2i9d_A 14 ERKENFNFFRHF--QNPQLSITSEVECGGARQRAKA-------------AGQSFFLHYLYAVLRAANEIPEFRYRIDPDG 78 (217) T ss_dssp TTHHHHHHHTTC--SBCEEEEEEEEECHHHHHHHHH-------------TTCCHHHHHHHHHHHHHHHSGGGGEEECTTS T ss_pred CHHHHHHHHHCC--CCCEEEEEEEEEHHHHHHHHHH-------------CCCCCHHHHHHHHHHHHHHCHHHEEEECCCC T ss_conf 459999998578--9987999999888999999998-------------3998279999999999863967649984895 Q ss_pred CCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-------CCCCCCCCCCCEEEEECCCCCCCC Q ss_conf 4101255665415651464202034145547989999987666543102-------334610037723898515321422 Q gi|254780674|r 280 AMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQ-------RKLKPEEYQGGTTSISNMGMLGIN 352 (423) Q Consensus 280 ~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~-------~~l~~~d~~ggtftiSNlG~~g~~ 352 (423) ++++|+++|+|+||++++||++|++++++.+++.++.+++.++.+++|+ +++++.++++|||||||+|.+|.+ T Consensus 79 ~i~~~~~v~i~~av~~~~~~~~~~i~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSnlg~~~ft 158 (217) T 2i9d_A 79 RVVLYDTIDMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFT 158 (217) T ss_dssp CEEEESCCEEEEEEECSTTSCEEEEEECCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCS T ss_pred EEEECCCCCEEEEEEECCCCEECEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCC T ss_conf 79983765579999827994764182488799999999999999998761102431578874567988999568865655 Q ss_pred CCCCCCCCCCEE---EEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHC Q ss_conf 101311588716---8984463123587789378954889898520011402889999999999871 Q gi|254780674|r 353 SFCAVINPPQST---ILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIE 416 (423) Q Consensus 353 ~~~pii~~pq~a---ILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le 416 (423) ++++++++|+.. +++.|+... .+| |.+|++||+||||+|||++||+||+.++++|| T Consensus 159 ~~~~~~~~~~~~~~P~i~~Gk~~~----~~g----r~~mpvslt~DHrviDG~~aa~Fl~~l~~~LE 217 (217) T 2i9d_A 159 SITGTQEKRSGNNYPLLNAGKAII----REG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFLK 217 (217) T ss_dssp EECCCBCSTTCCSSCEEEECCCEE----ETT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHC T ss_pred CCCCCCCCCCCCEEEEEECCCEEE----ECC----EEEEEEEEEEECHHHCHHHHHHHHHHHHHHHC T ss_conf 624666688531788998366688----999----69999978966235481999999999999749 No 12 >1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Probab=99.92 E-value=2.6e-25 Score=187.53 Aligned_cols=84 Identities=43% Similarity=0.782 Sum_probs=78.0 Q ss_pred CEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC Q ss_conf 34786788788721799999981689785279859999526531245368786899999248860403585599997075 Q gi|254780674|r 3 IHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423) Q Consensus 3 ~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423) .++|+||+||++|+||+|++|+|++||.|++||+||+|||||++|||+|+++|+|.++++++|+++++||++|+.|..++ T Consensus 27 ~~~I~mP~lg~~~~Eg~I~~W~vk~GD~V~~gd~L~evETDKa~~EI~A~~~G~l~~i~v~eGd~~v~vG~~Ia~I~~~~ 106 (128) T 1y8o_B 27 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128) T ss_dssp EEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG T ss_pred CEEEECCCCCCCCCEEEEEEEEECCCCEEECCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEEECCCCEEEEEECCC T ss_conf 73985899999831799989995799998089979999828657988426787999999667983881899899993477 Q ss_pred CCCC Q ss_conf 4211 Q gi|254780674|r 83 TEIP 86 (423) Q Consensus 83 ~~~~ 86 (423) ++.. T Consensus 107 ~~~~ 110 (128) T 1y8o_B 107 ADIS 110 (128) T ss_dssp GGGG T ss_pred CCCC T ss_conf 6655 No 13 >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Probab=99.92 E-value=2.3e-25 Score=187.86 Aligned_cols=85 Identities=41% Similarity=0.705 Sum_probs=79.5 Q ss_pred CCCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEEC Q ss_conf 96347867887887217999999816897852798599995265312453687868999992488604035855999970 Q gi|254780674|r 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILM 80 (423) Q Consensus 1 mm~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~ 80 (423) ++.++|+||+||++|+||+|++|||++||.|++||+||+|||||+++||+||++|+|.+|++++|+++|+||++|+.|.. T Consensus 5 ~~~~~i~mP~lg~~~~eg~i~~W~v~~Gd~V~~gd~l~evETdKa~~ev~a~~~G~l~~ilv~eGd~~v~vG~~ia~i~~ 84 (108) T 2dne_A 5 SSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVG 84 (108) T ss_dssp CCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES T ss_pred CCCEEEECCCCCCCCCEEEEEEEEECCCCEEECCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCCEECCCCEEEEEEC T ss_conf 78608979989998656999899936999980799899998385768986078969999996679848769998999924 Q ss_pred CCCCC Q ss_conf 75421 Q gi|254780674|r 81 DSTEI 85 (423) Q Consensus 81 ~~~~~ 85 (423) +.++. T Consensus 85 ~~e~~ 89 (108) T 2dne_A 85 KPEDI 89 (108) T ss_dssp CHHHH T ss_pred CCCCC T ss_conf 86651 No 14 >3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Probab=99.89 E-value=4e-23 Score=172.96 Aligned_cols=83 Identities=41% Similarity=0.751 Sum_probs=78.0 Q ss_pred CCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC Q ss_conf 63478678878872179999998168978527985999952653124536878689999924886040358559999707 Q gi|254780674|r 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423) Q Consensus 2 m~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423) +.++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.++++++|++.+++|++|+.|..+ T Consensus 4 ~~i~i~mP~lg~~~~eg~i~~W~v~~Gd~V~~gd~l~evEtdK~~~ev~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~~ 83 (87) T 3crk_C 4 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEK 83 (87) T ss_dssp CEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESS T ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEEEEECCCCEEECCCCEEEEEECC T ss_conf 98699779899986579999986399999978997999990778886871899999999977898297599989999566 Q ss_pred CCC Q ss_conf 542 Q gi|254780674|r 82 STE 84 (423) Q Consensus 82 ~~~ 84 (423) +++ T Consensus 84 ~ed 86 (87) T 3crk_C 84 EAD 86 (87) T ss_dssp STT T ss_pred CCC T ss_conf 786 No 15 >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.89 E-value=3.4e-23 Score=173.38 Aligned_cols=86 Identities=45% Similarity=0.763 Sum_probs=80.0 Q ss_pred CCCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEEC Q ss_conf 96347867887887217999999816897852798599995265312453687868999992488604035855999970 Q gi|254780674|r 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILM 80 (423) Q Consensus 1 mm~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~ 80 (423) ++..+|+||+||++|+||+|++|||++||.|++||+||+|||||+++||+||++|+|.++++++|++.++||++|+.|.. T Consensus 5 ~~~i~i~mP~lg~~~~eg~i~~W~v~~Gd~V~~gd~l~evEtdK~~~ev~a~~~G~l~~i~v~~Gd~~v~vG~~i~~i~~ 84 (98) T 2dnc_A 5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 84 (98) T ss_dssp CCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEEC T ss_pred CCCEEEECCCCCCCCCEEEEEEEEECCCCEEECCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEEECCCCEEEEEEC T ss_conf 78789977989998437999999908999993899899998583899997489989999997689829779998999903 Q ss_pred CCCCCC Q ss_conf 754211 Q gi|254780674|r 81 DSTEIP 86 (423) Q Consensus 81 ~~~~~~ 86 (423) ++++.. T Consensus 85 ~~e~~~ 90 (98) T 2dnc_A 85 EGEDWK 90 (98) T ss_dssp TTSCSS T ss_pred CCCCCC T ss_conf 877534 No 16 >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Probab=99.86 E-value=5.7e-22 Score=165.22 Aligned_cols=79 Identities=24% Similarity=0.527 Sum_probs=75.7 Q ss_pred CEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC Q ss_conf 34786788788721799999981689785279859999526531245368786899999248860403585599997075 Q gi|254780674|r 3 IHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423) Q Consensus 3 ~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423) +.+|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.++++++| +.+++|++|+.|+.++ T Consensus 1 aiei~vP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ei~ap~~G~v~~i~v~~G-~~v~~G~~l~~i~~~G 79 (79) T 1ghj_A 1 AIDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG-DTVLSGELLGKLTEGG 79 (79) T ss_dssp CEEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTT-CEECTTCEEEEECCCC T ss_pred CEEEECCCCCCCCCEEEEEEEECCCCCEEECCCEEEEEECCCEEEEEEECCCEEEEEEEECCC-CEECCCCEEEEEECCC T ss_conf 907985989998646999999927989990899899999586589998346899999984899-9978999999994799 No 17 >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Probab=99.83 E-value=1.1e-20 Score=156.71 Aligned_cols=81 Identities=22% Similarity=0.469 Sum_probs=76.7 Q ss_pred CEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC Q ss_conf 34786788788721799999981689785279859999526531245368786899999248860403585599997075 Q gi|254780674|r 3 IHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423) Q Consensus 3 ~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423) ..+|+||+||++|++|+|++|++++||.|++||+||+|||||+.++|+||++|+|.++++++| |.|++|++|+.|+.++ T Consensus 4 ii~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~Gd~l~~iEt~K~~~ei~a~~~G~I~~i~v~eG-~~V~~G~~L~~Ie~e~ 82 (93) T 1k8m_A 4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLD-DIAYVGKPLVDIETEA 82 (93) T ss_dssp CEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSS-CEECTTSEEEEEECSC T ss_pred EEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCEEEEEEEECCC-CEECCCCEEEEEECCC T ss_conf 079878999998415999999908979998899899998377289788388999999953899-9988999999997778 Q ss_pred CC Q ss_conf 42 Q gi|254780674|r 83 TE 84 (423) Q Consensus 83 ~~ 84 (423) .. T Consensus 83 ~~ 84 (93) T 1k8m_A 83 LK 84 (93) T ss_dssp CT T ss_pred CC T ss_conf 75 No 18 >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Probab=99.81 E-value=7.9e-22 Score=164.25 Aligned_cols=77 Identities=27% Similarity=0.532 Sum_probs=74.0 Q ss_pred CEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEEC Q ss_conf 347867887887217999999816897852798599995265312453687868999992488604035855999970 Q gi|254780674|r 3 IHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILM 80 (423) Q Consensus 3 ~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~ 80 (423) ..+|+||+||++|++|+|++|||++||.|++||+||+|||||+++||+||++|+|.++++++| +.+++|++|+.|+. T Consensus 2 ~iei~vP~lg~~~~~g~i~~w~v~~Gd~V~~gd~l~eiEtdK~~~ei~a~~~G~l~~i~v~~G-~~v~vG~~l~~i~e 78 (80) T 1pmr_A 2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG-TTVTSRQILGRLRE 78 (80) T ss_dssp CCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTT-CEECSSSEEEBCCC T ss_pred CEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCEEEEEEECCCEEEEEEEECCC-CEECCCCEEEEEEC T ss_conf 647988999999758999999907989987999899999386589987036899999986899-99879999999979 No 19 >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Probab=99.79 E-value=1.7e-19 Score=148.62 Aligned_cols=79 Identities=24% Similarity=0.436 Sum_probs=75.1 Q ss_pred CCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC Q ss_conf 63478678878872179999998168978527985999952653124536878689999924886040358559999707 Q gi|254780674|r 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423) Q Consensus 2 m~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423) |+++|+||+||++ +++|++|++++||.|++||+||++||||+.++|+||++|+|.++++++| +.+++|++|+.|+.+ T Consensus 1 M~~ei~~P~lg~~--~~~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~i~a~~~G~v~~i~v~~G-~~v~~G~~l~~ie~~ 77 (80) T 1qjo_A 1 MVKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVG-DKVKTGSLIMIFEVE 77 (80) T ss_dssp CEEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTT-CEECTTCCCEEEESC T ss_pred CCEEEECCCCCCC--EEEEEEEEECCCCEECCCCEEEEEEECCCCEEEECCCCEEEEEEEECCC-CEECCCCEEEEEECC T ss_conf 9628987999997--2899999917979998999899999075451998465279999995898-995899999999646 Q ss_pred CC Q ss_conf 54 Q gi|254780674|r 82 ST 83 (423) Q Consensus 82 ~~ 83 (423) ++ T Consensus 78 g~ 79 (80) T 1qjo_A 78 GA 79 (80) T ss_dssp CC T ss_pred CC T ss_conf 58 No 20 >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Probab=99.76 E-value=1.8e-19 Score=148.50 Aligned_cols=80 Identities=24% Similarity=0.374 Sum_probs=75.5 Q ss_pred CCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC Q ss_conf 63478678878872179999998168978527985999952653124536878689999924886040358559999707 Q gi|254780674|r 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423) Q Consensus 2 m~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423) ++.+|+||+|| ++++++|++|++++||.|++||+||++||||+.++++||++|+|.++++++| +.|++|++|+.|+.+ T Consensus 1 aiiei~~P~lg-~~~~~~I~~~~v~~Gd~V~~Gd~l~~iEt~K~~~~i~a~~~G~v~~i~v~~G-~~V~~G~~l~~ie~~ 78 (81) T 1gjx_A 1 ALVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVG-DKISEGGLIVVVEAE 78 (81) T ss_dssp CCEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSS-CEECSSSCCCEECCS T ss_pred CEEEEECCCCC-CCCEEEEEEEECCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEEECCC-CEECCCCEEEEEECC T ss_conf 91899889999-8748999999828979990899899999388379998055479999982898-998899999999456 Q ss_pred CC Q ss_conf 54 Q gi|254780674|r 82 ST 83 (423) Q Consensus 82 ~~ 83 (423) ++ T Consensus 79 g~ 80 (81) T 1gjx_A 79 GT 80 (81) T ss_dssp CC T ss_pred CC T ss_conf 48 No 21 >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Probab=99.70 E-value=1.1e-16 Score=129.81 Aligned_cols=76 Identities=22% Similarity=0.402 Sum_probs=70.8 Q ss_pred EEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCC Q ss_conf 47867887887217999999816897852798599995265312453687868999992488604035855999970754 Q gi|254780674|r 4 HTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423) Q Consensus 4 ~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423) .-|+||++|. +|+|++|++++||.|++||+||++|++|+.++|+||++|+|.++++++| |.|++|++|+.|+..+. T Consensus 2 e~i~~P~~g~---~g~i~~~~v~~Gd~V~~G~~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G-~~V~~G~~l~~ie~~~~ 77 (79) T 1iyu_A 2 EIIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLG-DKLKEGDAIIELEPAAG 77 (79) T ss_dssp EEEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTT-CEEETTSEEEEEECCCS T ss_pred CEEECCCCCC---CEEEEEEECCCCCEECCCCEEEEEEECCCEEEEECCCCEEEEEEEECCC-CEECCCCEEEEEECCCC T ss_conf 8798998989---6899999827979990899899999567158998798999999935896-99899999999947867 No 22 >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Probab=99.64 E-value=1.9e-17 Score=134.90 Aligned_cols=76 Identities=24% Similarity=0.445 Sum_probs=71.5 Q ss_pred CCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC Q ss_conf 63478678878872179999998168978527985999952653124536878689999924886040358559999707 Q gi|254780674|r 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423) Q Consensus 2 m~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423) |+++|++|..|+ |++|++++||.|++||+|+++||||+.++|+||++|+|.+|++++| |.|.+|++|+.|+.+ T Consensus 1 M~~~v~~P~~~~------I~~~~v~~Gd~V~~gd~l~~iE~~K~~~~v~a~~~G~v~~i~v~~G-d~V~~G~~l~~ie~~ 73 (85) T 2k7v_A 1 MVKEVNVPDIVE------VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVG-DKVKTGSLIMIFEVE 73 (85) T ss_dssp CCSCCCCCSCCC------CCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTT-CCBCTTSEEEEEECC T ss_pred CCCEEECCCCEE------EEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCEEEEEEEECCC-CEECCCCEEEEEECC T ss_conf 963797999788------9899927999991799899998188379986378989989996898-997999999999748 Q ss_pred CCC Q ss_conf 542 Q gi|254780674|r 82 STE 84 (423) Q Consensus 82 ~~~ 84 (423) +.. T Consensus 74 ~~~ 76 (85) T 2k7v_A 74 GAA 76 (85) T ss_dssp SSC T ss_pred CCC T ss_conf 877 No 23 >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Probab=99.58 E-value=4.1e-15 Score=119.36 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=62.2 Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCC Q ss_conf 7999999816897852798599995265312453687868999992488604035855999970754 Q gi|254780674|r 17 EGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423) Q Consensus 17 egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423) -|+|++|++++||.|++||+||+|||+|+.++|+||++|+|.+|++++| |.|.+|++|+.|+.+.. T Consensus 22 ~G~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~i~a~~~G~V~~i~v~~G-d~V~~G~~L~~i~~~~~ 87 (99) T 2ejm_A 22 TGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREG-AQANRHTPLVEFEEEES 87 (99) T ss_dssp SEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTT-EEECTTCBCEEECCCCS T ss_pred CEEEEEEECCCCCEECCCCEEEEEECCCCCEEEECCCCCEEEEEEECCC-CEECCCCEEEEEECCCC T ss_conf 9699999828989986899899997376237998475780879972898-99689998999963887 No 24 >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.52 E-value=1.9e-14 Score=114.94 Aligned_cols=73 Identities=19% Similarity=0.411 Sum_probs=65.0 Q ss_pred CCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC Q ss_conf 788788721799999981689785279859999526531245368786899999248860403585599997075 Q gi|254780674|r 8 MPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423) Q Consensus 8 mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423) .|....+...|+|++|+|++||.|++||+||+|||+|+.++|.||.+|+| ++++++| +.+.+|++|+.|+.+. T Consensus 16 dp~~v~ap~~G~i~~~~V~~Gd~V~~Gd~l~~iEt~K~~~~V~A~~~G~i-~~~v~~G-~~V~~G~~l~~ie~dd 88 (100) T 2dn8_A 16 DPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPG-AVLEAGCVVARLELDD 88 (100) T ss_dssp CTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEE-EECSCTT-CEECSSCEEEEECCSC T ss_pred CCCEEECCCCEEEEEEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEE-EEEECCC-CEECCCCEEEEEECCC T ss_conf 99888789986999999379899858997999982732689977889899-9997898-9999999999996688 No 25 >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Probab=99.49 E-value=6.7e-14 Score=111.25 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=61.3 Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC Q ss_conf 99999981689785279859999526531245368786899999248860403585599997075 Q gi|254780674|r 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423) Q Consensus 18 gtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423) |+|++|++++||.|++||+||++||+|+.++|+||++|+|.++++++| |.+++|++|+.|+.++ T Consensus 8 G~i~~~~v~~Gd~V~~g~~l~~ie~~K~~~~v~a~~~G~v~~i~v~~G-~~V~~G~~l~~i~~~s 71 (72) T 1z6h_A 8 GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEG-DFVNEGDVLLELSNST 71 (72) T ss_dssp EEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTT-CEECTTCEEEEEGGGC T ss_pred EEEEEEECCCCCEECCCCEEEEEECCCCCCCEECCCCEEEEEEEECCC-CEECCCCEEEEEECCC T ss_conf 899999927989990798999998176553058897989999977897-9989999999994798 No 26 >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A Probab=99.48 E-value=9.3e-14 Score=110.30 Aligned_cols=60 Identities=28% Similarity=0.518 Sum_probs=58.5 Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEE Q ss_conf 9999998168978527985999952653124536878689999924886040358559999 Q gi|254780674|r 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNI 78 (423) Q Consensus 18 gtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i 78 (423) |+|.+|++++||.|++||+||+|||||+.++++||.+|+|.++++++| |.+.+|++|+.| T Consensus 14 G~v~~~~v~~Gd~V~~g~~l~~iE~~K~~~~i~ap~~G~I~~i~v~~G-~~V~~G~~L~~I 73 (74) T 2d5d_A 14 GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEG-EAVDTGQPLIEL 73 (74) T ss_dssp EEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTT-CEECTTCEEEEE T ss_pred CEEEEEECCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEEECCC-CEECCCCEEEEE T ss_conf 799999948999993898899999356126998799989989994895-998999999993 No 27 >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Probab=99.45 E-value=7.2e-14 Score=111.03 Aligned_cols=68 Identities=21% Similarity=0.408 Sum_probs=61.1 Q ss_pred EEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCC Q ss_conf 2179999998168978527985999952653124536878689999924886040358559999707542 Q gi|254780674|r 15 MTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTE 84 (423) Q Consensus 15 m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423) ...|+|++|++++||.|++||+|++|||+|+.++|+||.+|+|.+ ++++| +.+++|++|+.|+.+..+ T Consensus 11 p~~G~i~~~~V~~Gd~V~~G~~l~~iEa~K~~~~I~ap~sG~I~~-~v~~G-d~V~~G~~l~~ie~~d~e 78 (84) T 2kcc_A 11 PSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKY-IKRPG-AVLEAGCVVARLELDDLE 78 (84) T ss_dssp SSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEE-CSCTT-CCCCTTCCCEEEECSCSC T ss_pred CCCEEEEEEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEE-EECCC-CEECCCCEEEEEECCCCC T ss_conf 988599999957989991798699998474478998688989999-98898-999999999999458851 No 28 >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Probab=99.41 E-value=3.9e-13 Score=106.12 Aligned_cols=60 Identities=22% Similarity=0.445 Sum_probs=58.3 Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEE Q ss_conf 9999998168978527985999952653124536878689999924886040358559999 Q gi|254780674|r 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNI 78 (423) Q Consensus 18 gtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i 78 (423) |+|.+|++++||.|++||+||+||++|..++|+||++|++.++++++| |.+..|++|+.| T Consensus 17 G~i~~~~V~~Gd~V~~Gq~l~~iEamK~~~~v~ap~~G~I~~i~v~~G-~~V~~G~~L~~I 76 (77) T 1dcz_A 17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKER-DAVQGGQGLIKI 76 (77) T ss_dssp CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTT-CBCCBTSEEEEE T ss_pred EEEEEEECCCCCEECCCCEEEEEEECCCEEEEECCCCEEEEEEEECCC-CEECCCCEEEEE T ss_conf 599999838989986999899999435117997799979989981896-997999999994 No 29 >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens} Probab=99.39 E-value=6.6e-14 Score=111.29 Aligned_cols=75 Identities=16% Similarity=0.347 Sum_probs=67.3 Q ss_pred EEEECCCCCCCEEE----EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEE Q ss_conf 47867887887217----99999981689785279859999526531245368786899999248860403585599997 Q gi|254780674|r 4 HTITMPSLSPTMTE----GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNIL 79 (423) Q Consensus 4 ~~i~mP~lGe~m~e----gtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~ 79 (423) ..+.++.+++++-. |+|++|++++||.|++||+||+||++|..++|+||++|+|.+|++++| |.|..|++|+.|+ T Consensus 16 ~n~~~~~~~~~~i~aP~~G~V~~i~V~~Gd~V~~G~~l~~iEsmK~~~~v~Ap~~G~V~~i~v~~G-d~V~~G~~L~~Ie 94 (94) T 2jku_A 16 ENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAG-DTVGEGDLLVELE 94 (94) T ss_dssp --------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------- T ss_pred CEEEECCCCCCEEECCCCCEEEEEECCCCCEECCCCEEEEEECCCCCEEEEECCCEEEEEEEECCC-CEECCCCEEEEEC T ss_conf 404112786898989999689899818999995898799998036538999388999989986897-9979999999979 No 30 >2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Probab=99.25 E-value=1.3e-12 Score=102.55 Aligned_cols=52 Identities=38% Similarity=0.585 Sum_probs=45.0 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC Q ss_conf 2222222234322101111000001101234433222100244432000100 Q gi|254780674|r 114 KHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVK 165 (423) Q Consensus 114 ~~~~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~~~~ 165 (423) ..+..++++||+||+||+|+||||++|.|||++|||+|+||++|+.+..... T Consensus 10 ~~~~~~~~asP~arklA~e~gidl~~I~GTG~~GRI~k~Dv~~~~~~~~~~~ 61 (70) T 2coo_A 10 EIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAI 61 (70) T ss_dssp CCSCCSCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHHHHTCC T ss_pred CCCCCCEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHCCCCCC T ss_conf 4679885259999999999499887877649999581999999997215788 No 31 >1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Probab=99.18 E-value=3.6e-12 Score=99.70 Aligned_cols=47 Identities=40% Similarity=0.607 Sum_probs=42.5 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC Q ss_conf 22222343221011110000011012344332221002444320001 Q gi|254780674|r 117 KNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTN 163 (423) Q Consensus 117 ~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~~ 163 (423) +.++++||+||+||+|+||||++|.|||++|||||+||++|+.+... T Consensus 2 ~~~v~asP~aRkla~e~gidl~~V~gTG~~GRI~k~DV~~~~~~~~~ 48 (62) T 1w4i_A 2 SREVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEETAK 48 (62) T ss_dssp CCSSEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHHHHS T ss_pred CCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCEEHHHHHHHHHCCCC T ss_conf 97650699999999992998877616899993839999999973468 No 32 >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Probab=99.13 E-value=1.7e-10 Score=88.47 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=7.3 Q ss_pred CCCCCCCCCCCCHH Q ss_conf 12344332221002 Q gi|254780674|r 141 SGSGPHGRIVKSDI 154 (423) Q Consensus 141 ~GTG~~GRItk~DV 154 (423) .|..-..||..+|- T Consensus 331 ~Ghaie~Ri~AEdp 344 (681) T 3n6r_A 331 TGWAIENRLYAEDP 344 (681) T ss_dssp CSEEEEEEEESEEG T ss_pred CCCCCCCEEEEECC T ss_conf 67314550000265 No 33 >1zwv_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; subunit binding domain; NMR {Homo sapiens} Probab=99.12 E-value=8e-12 Score=97.36 Aligned_cols=47 Identities=43% Similarity=0.665 Sum_probs=43.3 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 22222234322101111000001101234433222100244432000 Q gi|254780674|r 116 SKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKT 162 (423) Q Consensus 116 ~~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~ 162 (423) +..++++||+||+||+|+||||++|.|||++|||+++||++|++++. T Consensus 4 ~g~~v~aSP~aRklA~e~gIdl~~I~GTG~~GRItk~DV~~~i~~~~ 50 (58) T 1zwv_A 4 KGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQT 50 (58) T ss_dssp CCCCCCSCHHHHHHHHHTTCCSSSSSSCCSSSCCCHHHHHHHHHSCC T ss_pred CCCCEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHCCC T ss_conf 78864469999999999399887865769999480999999997066 No 34 >1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Probab=99.11 E-value=8.4e-12 Score=97.20 Aligned_cols=46 Identities=35% Similarity=0.692 Sum_probs=42.3 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC Q ss_conf 2222223432210111100000110123443322210024443200 Q gi|254780674|r 116 SKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTK 161 (423) Q Consensus 116 ~~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~ 161 (423) ++.++++||+||++|+|+||||++|.|||++|||+|+||++|+++. T Consensus 3 p~~~v~asP~arkla~e~gidl~~i~GTG~~GrItk~Dv~~~~~~~ 48 (49) T 1w85_I 3 PNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGG 48 (49) T ss_dssp ---CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHCC- T ss_pred CCCCEECCHHHHHHHHHCCCCHHHCCCCCCCCCEEHHHHHHHHHCC T ss_conf 9986101999999999949988887566999948199999999756 No 35 >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Probab=99.11 E-value=8.4e-11 Score=90.54 Aligned_cols=58 Identities=31% Similarity=0.548 Sum_probs=55.1 Q ss_pred EEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEE Q ss_conf 99981689785279859999526531245368786899999248860403585599997 Q gi|254780674|r 21 AKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNIL 79 (423) Q Consensus 21 ~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~ 79 (423) .++++++||+|++||+||.+|++|..++|.||++|++.+|++++| +.|..|++|+.|+ T Consensus 23 ~~~~V~~Gd~V~~g~~l~~iEamK~~~~i~a~~~G~V~~i~v~~G-~~V~~G~~L~~ie 80 (80) T 1bdo_A 23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG-QPVEFDEPLVVIE 80 (80) T ss_dssp SCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTT-CEECTTCEEEEEC T ss_pred CCCEECCCCEEECCCEEEEEEECCCHHHCCCCCCEEEEEEEECCC-CEECCCCEEEEEC T ss_conf 985326899996687899999762012065999989989986897-9989999999979 No 36 >2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltranferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus HB8} Probab=99.05 E-value=2.4e-11 Score=94.10 Aligned_cols=40 Identities=40% Similarity=0.672 Sum_probs=38.1 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 2234322101111000001101234433222100244432 Q gi|254780674|r 120 PIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLIS 159 (423) Q Consensus 120 ~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~ 159 (423) ++|||+||++|+|+||||++|.|||++||||++||++|+. T Consensus 1 i~AsP~arklA~e~gidl~~i~GtG~~GRItk~DV~~~~~ 40 (41) T 2eq9_C 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40 (41) T ss_dssp CCBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC T ss_pred CCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHH T ss_conf 9168999999999499998880789999581999999983 No 37 >2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Probab=99.03 E-value=2.5e-11 Score=94.07 Aligned_cols=48 Identities=31% Similarity=0.427 Sum_probs=42.9 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC Q ss_conf 222222343221011110000011012344332221002444320001 Q gi|254780674|r 116 SKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTN 163 (423) Q Consensus 116 ~~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~~ 163 (423) ...++.+||+||+||+|+||||++|.|||++|||+|+||++|+..... T Consensus 6 ~~~~~~~sPaarkla~e~gidl~~I~gTG~~GRI~k~DV~~~i~~~~~ 53 (64) T 2f60_K 6 GTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQT 53 (64) T ss_dssp TCHHHHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHHHHH T ss_pred CCCCEECCHHHHHHHHHCCCCHHHCCCCCCCCEEEHHHHHHHHHHCCC T ss_conf 988885299999999994998433256799982959999999983345 No 38 >1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Probab=99.03 E-value=4.3e-11 Score=92.48 Aligned_cols=45 Identities=36% Similarity=0.654 Sum_probs=40.4 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 222222343221011110000011012344332221002444320 Q gi|254780674|r 116 SKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLIST 160 (423) Q Consensus 116 ~~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~ 160 (423) ......+||+||++|+|+||||++|.|||++|||||+||++|++. T Consensus 6 ~~~~~~~sPa~rkla~e~gidl~~I~gtG~~GrItk~DV~~~i~~ 50 (51) T 1bal_A 6 EQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAK 50 (51) T ss_dssp CCSSCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTSCC T ss_pred CCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHC T ss_conf 667886199999999993998988817899994919999999973 No 39 >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} Probab=99.00 E-value=3.2e-10 Score=86.65 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=6.9 Q ss_pred CCCCEECCCCEEEEEE Q ss_conf 6897852798599995 Q gi|254780674|r 26 QEGDKISPGDILCEIE 41 (423) Q Consensus 26 k~GD~V~~gd~l~eVE 41 (423) ..|..|.-++.-|.++ T Consensus 236 ~~g~~~~~~~r~cs~q 251 (1165) T 2qf7_A 236 THGNVVHLFERDCSVQ 251 (1165) T ss_dssp TTSCEEEEEEEEEEEE T ss_pred CCCCEEEEECCCCCCC T ss_conf 8898899717888887 No 40 >2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase, structural genomics, NPPSFA; HET: FAD NAD; 1.80A {Thermus thermophilus HB8} Probab=99.00 E-value=3.9e-11 Score=92.75 Aligned_cols=39 Identities=36% Similarity=0.630 Sum_probs=37.3 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 234322101111000001101234433222100244432 Q gi|254780674|r 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLIS 159 (423) Q Consensus 121 ~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~ 159 (423) +|||+||++|+|+|||+++|+|||++|||+|+||++|++ T Consensus 1 lAsPaarkla~e~gidl~~i~GsG~~GRItk~DV~~~i~ 39 (40) T 2eq7_C 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHLE 39 (40) T ss_dssp CCCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-- T ss_pred CCCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHH T ss_conf 989899999999399998871789999583999999982 No 41 >2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus HB8} Probab=98.94 E-value=1.1e-10 Score=89.80 Aligned_cols=38 Identities=45% Similarity=0.727 Sum_probs=36.3 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 34322101111000001101234433222100244432 Q gi|254780674|r 122 ASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLIS 159 (423) Q Consensus 122 aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~ 159 (423) +||+||++|+|+||||++|+|||++||||++||++|.. T Consensus 2 AsP~arklA~e~gidl~~V~gTG~~GrItk~DV~~~~g 39 (40) T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAAG 39 (40) T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHHC T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHC T ss_conf 79899999999399898880789999694999998737 No 42 >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Probab=98.85 E-value=8.1e-10 Score=83.95 Aligned_cols=20 Identities=10% Similarity=-0.071 Sum_probs=9.3 Q ss_pred CCCCCHHHHHHHHHHHHHHH Q ss_conf 55479899999876665431 Q gi|254780674|r 307 ADQKSILDISLEVKQLAQRA 326 (423) Q Consensus 307 ad~~~l~~i~~~~~~l~~~a 326 (423) .|...|.++++-|.+..... T Consensus 366 iD~~~l~~is~~~e~vr~~y 385 (718) T 3bg3_A 366 VPMERVFDYSEYWEGARGLY 385 (718) T ss_dssp CCHHHHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHH T ss_conf 77999999999999999775 No 43 >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Probab=98.04 E-value=7e-06 Score=57.61 Aligned_cols=62 Identities=26% Similarity=0.466 Sum_probs=32.2 Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCE-----------------------------EEEECCCCCEEEEEEECCCCC Q ss_conf 799999981689785279859999526531-----------------------------245368786899999248860 Q gi|254780674|r 17 EGKLAKWIKQEGDKISPGDILCEIETDKAI-----------------------------MEFESVDEGIIDEILVPAGTE 67 (423) Q Consensus 17 egtI~~Wl~k~GD~V~~gd~l~eVETDKa~-----------------------------~ev~S~~~G~l~~i~v~eG~e 67 (423) .|.|.++++++||.|++||+|+.++.+.+- ..|.||++|++.++.+++| + T Consensus 9 ~G~V~~i~v~eG~~V~kGq~L~~ld~~~a~~~~~r~~~l~~~~~vS~~~~d~a~~~L~~~~I~AP~~G~V~~~~~~~G-~ 87 (116) T 2k32_A 9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIG-D 87 (116) T ss_dssp CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTT-C T ss_pred CEEEEEEECCCCCEECCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCC-C T ss_conf 889999988898998899899987621113355455442002300123269999755178998898879998987999-9 Q ss_pred EEECCC-EEEEEE Q ss_conf 403585-599997 Q gi|254780674|r 68 NIAVNS-PILNIL 79 (423) Q Consensus 68 ~v~VG~-~i~~i~ 79 (423) .|..|+ +|+.|. T Consensus 88 ~V~~g~~~l~~I~ 100 (116) T 2k32_A 88 YVSASTTELVRVT 100 (116) T ss_dssp EECTTTSCCEEEE T ss_pred EECCCCCEEEEEE T ss_conf 8889995489997 No 44 >1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* Probab=97.33 E-value=0.00025 Score=47.20 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=37.0 Q ss_pred EEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE Q ss_conf 9999981689785279859999526531245368786899999 Q gi|254780674|r 19 KLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 (423) Q Consensus 19 tI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~ 61 (423) .-+++ .++|+.|++|++++.||+.|++.++.||.+|.|.++- T Consensus 39 ~~v~l-p~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~vv~vN 80 (131) T 1hpc_A 39 VFVEL-PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN 80 (131) T ss_dssp EEEEC-CCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC T ss_pred EEEEC-CCCCCEEECCCEEEEEEECCCEEEEEECCCEEEEEEC T ss_conf 99978-9998775279728999984510013302434999851 No 45 >1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 Probab=97.32 E-value=0.00029 Score=46.83 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=37.0 Q ss_pred EEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE Q ss_conf 9999981689785279859999526531245368786899999 Q gi|254780674|r 19 KLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 (423) Q Consensus 19 tI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~ 61 (423) .-++ +.++|+.|++||+++.||+.|++.++.||.+|+|.++- T Consensus 39 ~~v~-lp~~g~~v~~g~~~~~vEs~k~~~~i~sPvsG~Vv~vN 80 (128) T 1onl_A 39 VYVE-LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVN 80 (128) T ss_dssp EEEE-CBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEEC T ss_pred EEEE-CCCCCCHHCCCCEEEEEEECCEEEECCCCCCCEEEEEH T ss_conf 8997-79998521079617999975405301389772589870 No 46 >3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} Probab=97.28 E-value=0.00031 Score=46.56 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=39.0 Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECC Q ss_conf 99999981689785279859999526531245368786899999248 Q gi|254780674|r 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64 (423) Q Consensus 18 gtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~e 64 (423) ..-++ |.++|+.|++||+++.||+.|++.++-||.+|+|.++--.. T Consensus 56 I~~v~-lp~~g~~v~~g~~~~~IEs~K~v~~i~sPvsG~VvevN~~l 101 (143) T 3mxu_A 56 LVFID-LPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAAL 101 (143) T ss_dssp EEEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG T ss_pred EEEEE-ECCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEEECHHH T ss_conf 89999-45887678359708999844558864303546999860444 No 47 >3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A Probab=97.27 E-value=0.00033 Score=46.43 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=36.9 Q ss_pred EEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE Q ss_conf 9999981689785279859999526531245368786899999 Q gi|254780674|r 19 KLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 (423) Q Consensus 19 tI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~ 61 (423) .-++ +..+|+.|++||+++.||+.|++.++.||.+|+|.++- T Consensus 62 ~~v~-lp~~g~~v~~gd~~~~vEs~K~~~~i~sPvsG~Vv~vN 103 (155) T 3hgb_A 62 VFVQ-LPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN 103 (155) T ss_dssp EEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC T ss_pred EEEE-ECCCCCEEECCCEEEEEEECCEEECCCCCCCCEEEEEC T ss_conf 9998-15799676079768999983402010278363578852 No 48 >1zko_A Glycine cleavage system H protein; TM0212, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A Probab=97.25 E-value=0.00036 Score=46.19 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=37.4 Q ss_pred EEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC Q ss_conf 999998168978527985999952653124536878689999924 Q gi|254780674|r 19 KLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVP 63 (423) Q Consensus 19 tI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~ 63 (423) .-++ +.++|+.|++|++++.||+.|++.++-||++|+|.++--. T Consensus 48 ~~v~-lp~~G~~v~~g~~~~~iEs~K~~~~i~sPvsG~Vv~vN~~ 91 (136) T 1zko_A 48 VYVD-LPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEK 91 (136) T ss_dssp EEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGG T ss_pred EEEE-CCCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEHHH T ss_conf 7997-7999988655976899998661577750354599986564 No 49 >3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} PDB: 2edg_A Probab=97.24 E-value=0.00037 Score=46.05 Aligned_cols=45 Identities=22% Similarity=0.196 Sum_probs=38.1 Q ss_pred EEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECC Q ss_conf 9999981689785279859999526531245368786899999248 Q gi|254780674|r 19 KLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64 (423) Q Consensus 19 tI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~e 64 (423) +-+++ ..+|+.|++||+++.||+.|++.++.||.+|.|.++--.. T Consensus 35 ~~v~l-p~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~~N~~l 79 (125) T 3klr_A 35 VYCSL-PEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKAL 79 (125) T ss_dssp EEEEC-CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG T ss_pred EEEEC-CCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEEEHHHH T ss_conf 99937-9999898548607999973236675103442566750435 No 50 >3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E* Probab=97.22 E-value=0.00041 Score=45.82 Aligned_cols=47 Identities=19% Similarity=0.136 Sum_probs=39.1 Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECC Q ss_conf 799999981689785279859999526531245368786899999248 Q gi|254780674|r 17 EGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64 (423) Q Consensus 17 egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~e 64 (423) +..-+++ .++|+.|++||+++.||+.|++.++-||++|+|.++--.. T Consensus 38 ~i~~v~l-p~~g~~v~~g~~~~~vEs~K~v~~i~sPvsG~Vv~vN~~l 84 (128) T 3a7l_A 38 DMVFVDL-PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDAL 84 (128) T ss_dssp SEEEEEC-CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG T ss_pred CEEEEEC-CCCCCEECCCCCEEEEEECCEEECCCCCCCCEEEEECHHH T ss_conf 7589977-9998771279703555403503111257562588752545 No 51 >3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans} Probab=97.09 E-value=0.0011 Score=42.80 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=34.8 Q ss_pred EEEECC-CCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC Q ss_conf 999526-53124536878689999924886040358559999707 Q gi|254780674|r 38 CEIETD-KAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423) Q Consensus 38 ~eVETD-Ka~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423) ..|+.+ .-..++.++.+|+|.++++++| +.|+-|++|+.|+.. T Consensus 48 G~v~~~p~~~~~l~~~v~G~V~~i~v~~G-~~V~kGq~L~~id~~ 91 (359) T 3lnn_A 48 AMIEADPAKLVKVLPPLAGRIVSLNKQLG-DEVKAGDVLFTIDSA 91 (359) T ss_dssp EEEECCSSSEEEECCSSCEEEEECCSCTT-CEECTTCEEEEEECS T ss_pred EEEEECCCEEEEEECCCCEEEEEEECCCC-CEECCCCEEEEECHH T ss_conf 99997755799996777789999998991-998899989999859 No 52 >3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} Probab=96.88 E-value=0.0044 Score=38.93 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=8.9 Q ss_pred HHHHHHHCCCCCCCCCC Q ss_conf 00001101234433222 Q gi|254780674|r 134 GIDLSSLSGSGPHGRIV 150 (423) Q Consensus 134 giDl~~V~GTG~~GRIt 150 (423) |.||+..-+-.++|..+ T Consensus 111 ~~nlNR~FPg~~~Gs~~ 127 (354) T 3cdx_A 111 GRDINRCFPGDPRGTFS 127 (354) T ss_dssp CCCGGGSTTCCTTSCHH T ss_pred CCCHHHHCCCCCCCCHH T ss_conf 98888829999999989 No 53 >3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B Probab=96.86 E-value=0.00035 Score=46.21 Aligned_cols=55 Identities=13% Similarity=0.344 Sum_probs=38.3 Q ss_pred ECCCCEECCCCEEEEEECCC-CEEEEECCCCCEEEEEE-ECCCCCEEECCCEEEEEEC Q ss_conf 16897852798599995265-31245368786899999-2488604035855999970 Q gi|254780674|r 25 KQEGDKISPGDILCEIETDK-AIMEFESVDEGIIDEIL-VPAGTENIAVNSPILNILM 80 (423) Q Consensus 25 ~k~GD~V~~gd~l~eVETDK-a~~ev~S~~~G~l~~i~-v~eG~e~v~VG~~i~~i~~ 80 (423) ++.++....-...-.|+.|- -...|.++++|.+.+++ +.+| |.|+-|++|+.|.. T Consensus 99 v~~~~~~~~~~~~G~V~~d~~~~~~v~a~~~G~I~~l~v~~~G-d~VkkGq~L~~lds 155 (407) T 3h9i_A 99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVG-DKVQKGTPLLDLTI 155 (407) T ss_dssp CEEECCEEEEEEEEEEEECGGGCEEEEEESCCCCBCCCSCCSS-CEESTTCCCEEEEC T ss_pred EEEEEEEEEEEEEEEEEECCCEEEEEECCCCEEEEEEEECCCC-CEECCCCEEEEECC T ss_conf 8986310599998999988760899965667799999506899-98858988999878 No 54 >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Probab=96.36 E-value=0.0029 Score=40.07 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=21.3 Q ss_pred CCCEEEEEEECCCCCEEECCCEEEEEECCCCC Q ss_conf 78689999924886040358559999707542 Q gi|254780674|r 53 DEGIIDEILVPAGTENIAVNSPILNILMDSTE 84 (423) Q Consensus 53 ~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423) .+|+|.+|++++| |.|..|++|+.++++... T Consensus 17 ~~g~i~~w~v~~G-d~V~~Gd~l~~iEt~K~~ 47 (93) T 1k8m_A 17 REVTVKEWYVKEG-DTVSQFDSICEVQSDKAS 47 (93) T ss_dssp CCEEEEEECCCTT-CEECSSSCCEEEECSSCE T ss_pred CEEEEEEEEECCC-CEECCCCEEEEEECCCCE T ss_conf 1599999990897-999889989999837728 No 55 >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Probab=95.52 E-value=0.015 Score=35.27 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=34.1 Q ss_pred CEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 31245368786899999248860403585599997075421 Q gi|254780674|r 45 AIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 45 a~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) ...+|.||..|++.++++++| |.|+.|++|+.++..+-+. T Consensus 7 ~~~~i~ap~~G~i~~~~V~~G-d~V~~Gq~l~~iEamK~~~ 46 (77) T 1dcz_A 7 GEGEIPAPLAGTVSKILVKEG-DTVKAGQTVLVLEAMKMET 46 (77) T ss_dssp CSSEEEBSSSCEEEEECCCTT-CEECTTSEEEEEEETTEEE T ss_pred CCCEEECCCCEEEEEEECCCC-CEECCCCEEEEEEECCCEE T ss_conf 899698999959999983898-9986999899999435117 No 56 >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Probab=95.52 E-value=0.011 Score=36.31 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=35.2 Q ss_pred ECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 526531245368786899999248860403585599997075421 Q gi|254780674|r 41 ETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 41 ETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) |.|. ..+.||..|+|.+|++++| |.|..|++|+.++..+... T Consensus 2 e~dp--~~v~ap~~G~i~~~~V~~G-d~V~~G~~l~~iEa~K~~~ 43 (84) T 2kcc_A 2 ENDP--TVLRSPSAGKLTQYTVEDG-GHVEAGSSYAEMEVMKMIM 43 (84) T ss_dssp CCCT--TEECCSSSCCEEEESSCTT-EEECTTCEEEEEECSSCEE T ss_pred CCCC--CEEECCCCEEEEEEEECCC-CEECCCCEEEEEECCCEEE T ss_conf 8899--8798898859999995798-9991798699998474478 No 57 >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=95.45 E-value=0.017 Score=34.90 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=33.6 Q ss_pred EEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 245368786899999248860403585599997075421 Q gi|254780674|r 47 MEFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 47 ~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) ..+.||..|+|.+|++++| |.|..|++|+.|+.++... T Consensus 18 ~~v~ap~~G~i~~~~V~~G-d~V~~Gd~l~~iEt~K~~~ 55 (100) T 2dn8_A 18 TVLRSPSAGKLTQYTVEDG-GHVEAGSSYAEMEVMKMIM 55 (100) T ss_dssp TEEECSSCEEEEEESSCTT-EEECTTCEEEEEEETTEEE T ss_pred CEEECCCCEEEEEEEECCC-CEECCCCEEEEEECCCEEE T ss_conf 8887899869999993798-9985899799998273268 No 58 >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Probab=95.23 E-value=0.018 Score=34.86 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=36.5 Q ss_pred CCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 26531245368786899999248860403585599997075421 Q gi|254780674|r 42 TDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 42 TDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) ++...-.+.||..|+|.+|++++| |.|..|++|+.|+..+... T Consensus 10 ~~~~~~~~~aPm~G~i~~~~v~~G-d~V~~g~~l~~vEt~K~~~ 52 (99) T 2ejm_A 10 SQETQGGPLAPMTGTIEKVFVKAG-DKVKAGDSLMVMIAMKMEH 52 (99) T ss_dssp SCSCCSSCBCSSSEEEEEECCCTT-EEECSSCEEEEEESSSSEE T ss_pred CCCCCCCEECCCCEEEEEEECCCC-CEECCCCEEEEEECCCCCE T ss_conf 656789233889969999982898-9986899899997376237 No 59 >2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli} Probab=95.19 E-value=0.0083 Score=37.05 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=31.2 Q ss_pred CEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC Q ss_conf 3124536878689999924886040358559999707 Q gi|254780674|r 45 AIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423) Q Consensus 45 a~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423) -.++|-|+.+|+|.++++++| +.|+-|++|+.|+.. T Consensus 21 ~~v~I~a~v~G~V~~i~v~~G-~~VkkG~~L~~ld~~ 56 (277) T 2f1m_A 21 RIAEVRPQVSGIILKRNFKEG-SDIEAGVSLYQIDPA 56 (277) T ss_dssp EEEEECCSSCEEEEEECSCTT-CEECTTSCSEEECCH T ss_pred EEEEEEEECCEEEEEEECCCC-CEECCCCEEEEECCH T ss_conf 999999545789999987993-998899999998858 No 60 >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Probab=95.09 E-value=0.015 Score=35.25 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=21.7 Q ss_pred EEECCCCCEE-------EEEEECCCCCEEECCCEEEEEECCCCC Q ss_conf 4536878689-------999924886040358559999707542 Q gi|254780674|r 48 EFESVDEGII-------DEILVPAGTENIAVNSPILNILMDSTE 84 (423) Q Consensus 48 ev~S~~~G~l-------~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423) .|.||..|++ .++++++| |.|..|++++.++..+-. T Consensus 6 ~V~aPm~G~~~~~~~p~~~~~V~~G-d~V~~g~~l~~iEamK~~ 48 (80) T 1bdo_A 6 IVRSPMVGTFYRTPSPDAKAFIEVG-QKVNVGDTLCIVEAMKMM 48 (80) T ss_dssp EEECSSSEEEESSSSTTSCCSCCTT-CEECTTCEEEEEEETTEE T ss_pred EEECCCCEEEEECCCCCCCCEECCC-CEEECCCEEEEEEECCCH T ss_conf 9858987799814699998532689-999668789999976201 No 61 >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A Probab=94.98 E-value=0.024 Score=34.02 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=33.2 Q ss_pred EEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 245368786899999248860403585599997075421 Q gi|254780674|r 47 MEFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 47 ~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) .-|.||..|++.++++++| |.|+.|++|+.++.++... T Consensus 6 ~~v~ap~~G~v~~~~v~~G-d~V~~g~~l~~iE~~K~~~ 43 (74) T 2d5d_A 6 NVVSAPMPGKVLRVLVRVG-DRVRVGQGLLVLEAMKMEN 43 (74) T ss_dssp CEEECSSCEEEEEECCCTT-CEECTTCEEEEEEETTEEE T ss_pred CEEECCCCCEEEEEECCCC-CEEECCCEEEEEEECCCEE T ss_conf 9997999979999994899-9993898899999356126 No 62 >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Probab=94.93 E-value=0.014 Score=35.59 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=25.7 Q ss_pred CCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 786899999248860403585599997075421 Q gi|254780674|r 53 DEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 53 ~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) .+|+|.+|++++| |.|..|++|+.++..+... T Consensus 11 ~~g~i~~~~v~~G-d~V~~G~~l~~iE~~K~~~ 42 (79) T 1iyu_A 11 GDGEVIELLVKTG-DLIEVEQGLVVLESAKASM 42 (79) T ss_dssp SEEEEEEECCCTT-CBCCSSSEEEEEECSSCEE T ss_pred CCEEEEEEECCCC-CEECCCCEEEEEEECCCEE T ss_conf 9689999982797-9990899899999567158 No 63 >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Probab=94.76 E-value=0.029 Score=33.39 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=31.1 Q ss_pred EECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCC Q ss_conf 536878689999924886040358559999707542 Q gi|254780674|r 49 FESVDEGIIDEILVPAGTENIAVNSPILNILMDSTE 84 (423) Q Consensus 49 v~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423) |.||..|+|.+|++++| |.|..|++|+.++..+.. T Consensus 2 v~~~m~G~i~~~~v~~G-d~V~~g~~l~~ie~~K~~ 36 (72) T 1z6h_A 2 VSIQMAGNLWKVHVKAG-DQIEKGQEVAILESMKME 36 (72) T ss_dssp EECCSSEEEEEECCCTT-CEECTTCEEEEEEETTEE T ss_pred EECCCCEEEEEEECCCC-CEECCCCEEEEEECCCCC T ss_conf 80538789999992798-999079899999817655 No 64 >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Probab=94.69 E-value=0.015 Score=35.37 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=25.1 Q ss_pred CCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 786899999248860403585599997075421 Q gi|254780674|r 53 DEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 53 ~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) .++++.+|++++| |.|..|++++.+++++... T Consensus 13 ~~~~i~~~~v~~G-d~V~~g~~l~~iEt~K~~~ 44 (80) T 1qjo_A 13 DEVEVTEVMVKVG-DKVAAEQSLITVEGDKASM 44 (80) T ss_dssp SCEEEEECCCCTT-CEECBTSEEEEEESSSSCE T ss_pred CEEEEEEEEECCC-CEECCCCEEEEEEECCCCE T ss_conf 7289999991797-9998999899999075451 No 65 >1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A Probab=94.63 E-value=0.014 Score=35.58 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=37.4 Q ss_pred ECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEEC Q ss_conf 16897852798599995265312453687868999992488604035855999970 Q gi|254780674|r 25 KQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILM 80 (423) Q Consensus 25 ~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~ 80 (423) ++.|+.-..-+.--.|+.+ -..+|.++.+|+|.++++++| +.|+-|++|+.|+. T Consensus 23 v~~~~~~~~~~~~G~v~~~-~~~~v~~~v~G~V~~v~V~~G-d~VkkGd~L~~ld~ 76 (369) T 1vf7_A 23 LEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEG-SDVKAGQQLYQIDP 76 (369) T ss_dssp ------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSS-EEECTTSEEEEECC T ss_pred EEEEEEEEEEEEEEEEEEE-EEEEEEEECCEEEEEEECCCC-CEECCCCEEEEECC T ss_conf 8786214799999999970-899999545789999988995-99889998999886 No 66 >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Probab=94.55 E-value=0.025 Score=33.86 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=38.0 Q ss_pred CCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC Q ss_conf 68978527985999952653124536878689999924886040358559999707 Q gi|254780674|r 26 QEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423) Q Consensus 26 k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423) +.||--..=..-..|+..+ ...|.++.+|+|.++++++| +.|+.|++|+.|+.. T Consensus 12 ~~g~i~~tv~~~G~v~~~~-~~~v~a~~~G~V~~v~v~~G-~~V~~G~~L~~id~~ 65 (341) T 3fpp_A 12 RPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIG-DKVKKDQLLGVIDPE 65 (341) T ss_dssp -CCCCCCEEEEEEEEEESS-EEECCCSSCEEEEEECCCTT-CEECTTCEEEEECCH T ss_pred EEEEEEEEEEEEEEEEEEE-EEEEECCCCEEEEEEECCCC-CEECCCCEEEEECHH T ss_conf 9987249999999999808-99998447789999998991-998899989998819 No 67 >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Probab=94.41 E-value=0.01 Score=36.46 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=20.4 Q ss_pred EEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCC Q ss_conf 2453687868999992488604035855999970754 Q gi|254780674|r 47 MEFESVDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423) Q Consensus 47 ~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423) .+|-+|..|.|.+|++++| |.|..|++|+.++.+.. T Consensus 3 ~~v~~P~~~~I~~~~v~~G-d~V~~gd~l~~iE~~K~ 38 (85) T 2k7v_A 3 KEVNVPDIVEVTEVMVKVG-DKVAAEQSLITVEGDKA 38 (85) T ss_dssp SCCCCCSCCCCCSCCCSSS-CCCCCSSSCCCCSCCCS T ss_pred CEEECCCCEEEEEEEECCC-CEECCCCEEEEEECCCC T ss_conf 3797999788989992799-99917998999981883 No 68 >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Probab=93.80 E-value=0.043 Score=32.27 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=28.0 Q ss_pred CCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCCC Q ss_conf 687868999992488604035855999970754211 Q gi|254780674|r 51 SVDEGIIDEILVPAGTENIAVNSPILNILMDSTEIP 86 (423) Q Consensus 51 S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~~ 86 (423) +..+|+|.+|++++| |.|..|++|+.+++++.... T Consensus 12 ~~~eg~i~~w~v~~G-d~V~~gd~l~~vEtdK~~~e 46 (79) T 1ghj_A 12 SIADGTVATWHKKPG-EAVKRDELIVDIETDKVVME 46 (79) T ss_dssp SCSCEEECCCSSCTT-SEECSSCEEEEEECSSCEEE T ss_pred CCCEEEEEEEECCCC-CEEECCCEEEEEECCCEEEE T ss_conf 864699999992798-99908998999995865899 No 69 >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens} Probab=93.56 E-value=0.034 Score=32.98 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=32.5 Q ss_pred EEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 45368786899999248860403585599997075421 Q gi|254780674|r 48 EFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 48 ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) -+.||..|++.++++++| |.|..|++++.++..+... T Consensus 27 ~i~aP~~G~V~~i~V~~G-d~V~~G~~l~~iEsmK~~~ 63 (94) T 2jku_A 27 VLRSPMPGVVVAVSVKPG-DAVAEGQEICVIEAMKMQN 63 (94) T ss_dssp CCCCSSSCEEEEECCCTT-CCCCTTCCCEEEEC----- T ss_pred EEECCCCCEEEEEECCCC-CEECCCCEEEEEECCCCCE T ss_conf 898999968989981899-9995898799998036538 No 70 >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Probab=93.17 E-value=0.1 Score=29.73 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=27.1 Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECCCCE Q ss_conf 1799999981689785279859999526531 Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETDKAI 46 (423) Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~ 46 (423) ..|+|.++++++||.|++||+|+++.+.... T Consensus 38 ~~G~V~~v~v~~G~~V~~G~~L~~id~~~~~ 68 (341) T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAE 68 (341) T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHH T ss_pred CCEEEEEEECCCCCEECCCCEEEEECHHHHH T ss_conf 7789999998991998899989998819999 No 71 >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Probab=92.55 E-value=0.15 Score=28.65 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=0.0 Q ss_pred EEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCCCCCCCCC Q ss_conf 453687868999992488604035855999970754211111222 Q gi|254780674|r 48 EFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTEIPPSPPLS 92 (423) Q Consensus 48 ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~~~~~~~~ 92 (423) .|+||..|.+-|++|++| |.|+.|++|++|+.=+-+.+-..+.. T Consensus 1079 ~V~Ap~~GnVwkv~V~~G-d~V~~Gd~l~IlEAMKME~~V~Ap~~ 1122 (1150) T 3hbl_A 1079 HIGAQMPGSVTEVKVSVG-ETVKANQPLLITEAMKMETTIQAPFD 1122 (1150) T ss_dssp EEECSSSEEEEEECCCTT-CEECTTCEEEEEESSSCEEEEECSSS T ss_pred EEECCCCEEEEEEEECCC-CEECCCCEEEEEEHHCCCCCCCCCCC T ss_conf 770689847899980899-99799998999965208671538999 No 72 >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Probab=92.50 E-value=0.13 Score=29.04 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.5 Q ss_pred EEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC Q ss_conf 24536878689999924886040358559999707 Q gi|254780674|r 47 MEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423) Q Consensus 47 ~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423) +.|-+..+|+|.++++++| +.|+-|++|+.|+.+ T Consensus 2 V~i~~~v~G~V~~i~v~eG-~~V~kGq~L~~ld~~ 35 (116) T 2k32_A 2 VIIKPQVSGVIVNKLFKAG-DKVKKGQTLFIIEQD 35 (116) T ss_dssp EEECCSSCEEEEEECSCTT-SEECTTCEEEEEECT T ss_pred CEEECCCCEEEEEEECCCC-CEECCCCEEEEEECH T ss_conf 3896757889999988898-998899899987621 No 73 >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=92.39 E-value=0.068 Score=30.96 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=28.5 Q ss_pred CCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 8786899999248860403585599997075421 Q gi|254780674|r 52 VDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 52 ~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) -.+|+|.+|++++| |.|..|++|+.+++++... T Consensus 19 ~~eg~i~~W~v~~G-d~V~~gd~l~evEtdK~~~ 51 (98) T 2dnc_A 19 MEEGNIVKWLKKEG-EAVSAGDALCEIETDKAVV 51 (98) T ss_dssp CSEECEEEESSCTT-CEECTTSEEEEEECSSCEE T ss_pred CCEEEEEEEEECCC-CEEECCCEEEEEECCCEEE T ss_conf 43799999990899-9993899899998583899 No 74 >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} Probab=92.23 E-value=0.056 Score=31.49 Aligned_cols=42 Identities=7% Similarity=-0.012 Sum_probs=17.9 Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC Q ss_conf 79999998168978527985999952653124536878689999924 Q gi|254780674|r 17 EGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVP 63 (423) Q Consensus 17 egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~ 63 (423) -|+|.+|.--.|.-|..|.-+. -.-.+|++.+|--|.|+.+- T Consensus 378 ~g~~~~~~~~~~~~~r~d~~~~-----~~g~~~~~~~d~~~~k~~~~ 419 (1165) T 2qf7_A 378 YGRITAYRSASGFGIRLDGGTS-----YSGAIITRYYDPLLVKVTAW 419 (1165) T ss_dssp CEECCEEECCCCTTEEEECCSC-----CTTCEECSSSCCEEEEEEEE T ss_pred CCCCEEEECCCCCCEEECCCCC-----CCCCEECCCCCCHHHEEEEE T ss_conf 7644288789999789810352-----69985477785042235687 No 75 >1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Probab=92.18 E-value=0.1 Score=29.77 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=29.0 Q ss_pred CCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 68786899999248860403585599997075421 Q gi|254780674|r 51 SVDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 51 S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) +-..|+|.+|++++| |.|..|++|+.+++++... T Consensus 38 ~~~Eg~I~~W~vk~G-D~V~~gd~L~evETDKa~~ 71 (128) T 1y8o_B 38 TMTMGTVQRWEKKVG-EKLSEGDLLAEIETDKATI 71 (128) T ss_dssp TCSEEEEEEECSCTT-CEECTTCEEEEEECSSCEE T ss_pred CCCEEEEEEEEECCC-CEEECCCEEEEEECCCEEE T ss_conf 831799989995799-9980899799998286579 No 76 >2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli} Probab=92.10 E-value=0.078 Score=30.56 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=25.9 Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECCC Q ss_conf 17999999816897852798599995265 Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETDK 44 (423) Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETDK 44 (423) ..|.|.+|++++||.|++||+|+++.+.. T Consensus 29 v~G~V~~i~v~~G~~VkkG~~L~~ld~~~ 57 (277) T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPAT 57 (277) T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHH T ss_pred CCEEEEEEECCCCCEECCCCEEEEECCHH T ss_conf 57899999879939988999999988589 No 77 >3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans} Probab=92.08 E-value=0.22 Score=27.53 Aligned_cols=28 Identities=32% Similarity=0.620 Sum_probs=25.7 Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECC Q ss_conf 1799999981689785279859999526 Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETD 43 (423) Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETD 43 (423) ..|+|.+|++++||.|++||+|+++++. T Consensus 64 v~G~V~~i~v~~G~~V~kGq~L~~id~~ 91 (359) T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359) T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECS T ss_pred CCEEEEEEECCCCCEECCCCEEEEECHH T ss_conf 7789999998991998899989999859 No 78 >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Probab=91.84 E-value=0.086 Score=30.26 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=29.0 Q ss_pred CCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 68786899999248860403585599997075421 Q gi|254780674|r 51 SVDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 51 S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) +-.+|+|.+|++++| |.|..|++|+.+++++... T Consensus 18 ~~~eg~i~~W~v~~G-d~V~~gd~l~evETdKa~~ 51 (108) T 2dne_A 18 TMQAGTIARWEKKEG-DKINEGDLIAEVETDKATV 51 (108) T ss_dssp SCCEEEEEECSSCTT-CEECTTSEEEEEECSSCEE T ss_pred CCCEEEEEEEEECCC-CEEECCCEEEEEECCCEEE T ss_conf 865699989993699-9980799899998385768 No 79 >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Probab=91.80 E-value=0.016 Score=35.08 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=27.8 Q ss_pred CCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 8786899999248860403585599997075421 Q gi|254780674|r 52 VDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 52 ~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) ..++++.+|++++| |.|..|++|+.+++++... T Consensus 13 ~~~~~I~~~~v~~G-d~V~~Gd~l~~iEt~K~~~ 45 (81) T 1gjx_A 13 HENVDIIAVEVNVG-DTIAVDDTLITLETDKATM 45 (81) T ss_dssp CSSEEEEEECCCSS-CBCCSSCCCEEEECSSCEE T ss_pred CCEEEEEEEECCCC-CEEECCCEEEEEEECCCEE T ss_conf 74899999982897-9990899899999388379 No 80 >3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Probab=91.77 E-value=0.12 Score=29.29 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=28.3 Q ss_pred CCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 786899999248860403585599997075421 Q gi|254780674|r 53 DEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 53 ~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) .+|+|.+|++++| |.|..|++|+.+++++... T Consensus 18 ~eg~i~~W~v~~G-d~V~~gd~l~evEtdK~~~ 49 (87) T 3crk_C 18 TMGTVQRWEKKVG-EKLSEGDLLAEIETDXATI 49 (87) T ss_dssp CEEEEEEECSCTT-CEECTTCEEEEEECSSCEE T ss_pred CEEEEEEEECCCC-CEEECCCEEEEEEECCEEE T ss_conf 5799999863999-9997899799999077888 No 81 >2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 Probab=91.52 E-value=0.19 Score=27.92 Aligned_cols=34 Identities=9% Similarity=-0.043 Sum_probs=19.3 Q ss_pred EEEECCCCCEEEEEEECCCCCE---EECCCEEEEEECC Q ss_conf 2453687868999992488604---0358559999707 Q gi|254780674|r 47 MEFESVDEGIIDEILVPAGTEN---IAVNSPILNILMD 81 (423) Q Consensus 47 ~ev~S~~~G~l~~i~v~eG~e~---v~VG~~i~~i~~~ 81 (423) .+|-||++|.+..+ -+.-|++ =-.|+-++++-.+ T Consensus 8 ~~i~APv~G~vi~l-~~V~D~vFs~k~mG~G~aI~P~~ 44 (154) T 2gpr_A 8 LKVLAPCDGTIITL-DEVEDEVFKERMLGDGFAINPKS 44 (154) T ss_dssp EEEECSSSEEEECG-GGSSCHHHHTTSSCEEEEEEESS T ss_pred EEEEECCCCEEEEC-CCCCCHHHCCCCCCCEEEEECCC T ss_conf 09996477389881-32867363568801629999279 No 82 >1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A Probab=90.68 E-value=0.14 Score=28.79 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=25.0 Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECC Q ss_conf 1799999981689785279859999526 Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETD 43 (423) Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETD 43 (423) ..|+|.+|++++||.|++||+|+++.+. T Consensus 50 v~G~V~~v~V~~Gd~VkkGd~L~~ld~~ 77 (369) T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPA 77 (369) T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCH T ss_pred CCEEEEEEECCCCCEECCCCEEEEECCH T ss_conf 5789999988995998899989998868 No 83 >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Probab=90.57 E-value=0.039 Score=32.53 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=14.3 Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECC Q ss_conf 1799999981689785279859999526 Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETD 43 (423) Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETD 43 (423) .+|+|.+|++++||.|..|++|+.|+++ T Consensus 52 ~~G~l~~i~~~~G~~v~vG~~i~~i~~~ 79 (428) T 3dva_I 52 VKGKVLEILVPEGTVATVGQTLITLDAP 79 (428) T ss_dssp ---------------------------- T ss_pred CCEEEEEEEECCCCEEECCCEEEEEECC T ss_conf 9979999984899998079989999557 No 84 >1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens} Probab=90.04 E-value=0.046 Score=32.05 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=30.0 Q ss_pred ECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 368786899999248860403585599997075421 Q gi|254780674|r 50 ESVDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 50 ~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) ++-.+|+|.+|++++| |.|..|++|+.|++|+... T Consensus 13 e~~~eg~I~~Wlvk~G-D~V~~gd~L~evETDKa~~ 47 (229) T 1zy8_K 13 PTMEEGNIVKWLKKEG-EAVSAGDALCEIETDKAVV 47 (229) T ss_dssp ------------------------------------ T ss_pred CCCCEEEEEEEEECCC-CEECCCCEEEEEEECCEEE T ss_conf 9862699989981899-9977999799999286689 No 85 >3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis} Probab=88.92 E-value=0.55 Score=24.86 Aligned_cols=41 Identities=22% Similarity=0.177 Sum_probs=22.8 Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEE-EECCCCCEEE Q ss_conf 9999998168978527985999952653124-5368786899 Q gi|254780674|r 18 GKLAKWIKQEGDKISPGDILCEIETDKAIME-FESVDEGIID 58 (423) Q Consensus 18 gtI~~Wl~k~GD~V~~gd~l~eVETDKa~~e-v~S~~~G~l~ 58 (423) |--+--.+.+||.|.+||.|+-|.|-|-.+- +-||++|++. T Consensus 109 G~~v~~i~~~G~rV~~gd~lA~i~T~KGEVR~i~spv~G~Vv 150 (169) T 3d4r_A 109 GYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVI 150 (169) T ss_dssp SSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEE T ss_pred CEEEEEECCCCCEECCCCEEEEEEECCCCEEEECCCCCEEEE T ss_conf 569999757553761487279998268507994499857999 No 86 >1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A Probab=87.06 E-value=0.57 Score=24.75 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=19.8 Q ss_pred CEEEEECCCCCEEEEEEECCCCCEE----ECCCEEEEEECCC Q ss_conf 3124536878689999924886040----3585599997075 Q gi|254780674|r 45 AIMEFESVDEGIIDEILVPAGTENI----AVNSPILNILMDS 82 (423) Q Consensus 45 a~~ev~S~~~G~l~~i~v~eG~e~v----~VG~~i~~i~~~~ 82 (423) ..-.+-||++|.+.. +-+.. |.+ -.|+-++++-.++ T Consensus 11 ~~~~i~aPv~G~vi~-L~~V~-D~vFs~~~mG~G~aI~P~~~ 50 (162) T 1ax3_A 11 GEEVFVSPITGEIHP-ITDVP-DQVFSGKMMGDGFAILPSEG 50 (162) T ss_dssp CCSSCCCCCSEEEEE-GGGSS-SHHHHTCTTSEEEEEEECSS T ss_pred CCEEEEECCCCEEEE-CCCCC-CHHHCCCCCCCCEEEECCCC T ss_conf 975999348868988-23197-74634678027489982799 No 87 >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Probab=86.44 E-value=0.42 Score=25.66 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=25.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEE Q ss_conf 45547989999987666543102334610037723898515321422101311588716898446312 Q gi|254780674|r 306 QADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEK 373 (423) Q Consensus 306 ~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~ 373 (423) -.|++++.++.+.++... ++.. =+-+| .++..|+-.|.-.. +=++++|+... T Consensus 256 mLDn~s~e~lk~aV~~~~-----~~v~-lEaSG-GI~~~ni~~yA~tG---------VD~IsvGalt~ 307 (320) T 3paj_A 256 MLDNFSLEMMREAVKINA-----GRAA-LENSG-NITLDNLKECAETG---------VDYISVGALTK 307 (320) T ss_dssp EEESCCHHHHHHHHHHHT-----TSSE-EEEES-SCCHHHHHHHHTTT---------CSEEECTHHHH T ss_pred EECCCCHHHHHHHHHHHC-----CCEE-EEEEC-CCCHHHHHHHHHCC---------CCEEECCHHHC T ss_conf 865899999999999758-----9779-99978-99899999999819---------89998797666 No 88 >1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A Probab=84.01 E-value=0.56 Score=24.83 Aligned_cols=38 Identities=16% Similarity=-0.020 Sum_probs=23.0 Q ss_pred CCEEEEECCCCCEEEEEEECCCCCE---EECCCEEEEEECCC Q ss_conf 5312453687868999992488604---03585599997075 Q gi|254780674|r 44 KAIMEFESVDEGIIDEILVPAGTEN---IAVNSPILNILMDS 82 (423) Q Consensus 44 Ka~~ev~S~~~G~l~~i~v~eG~e~---v~VG~~i~~i~~~~ 82 (423) ...++|-||++|.+..+ -+..|++ =-.|.-++++-.++ T Consensus 10 ~~~i~v~APv~G~vi~L-~~v~D~vFs~~~~G~G~AI~P~~~ 50 (161) T 1f3z_A 10 TGTIEIIAPLSGEIVNI-EDVPDVVFAEKIVGDGIAIKPTGN 50 (161) T ss_dssp --CEEEECSSCEEEEEG-GGSSSHHHHTTSSCEEEEEEECSS T ss_pred CCCEEEEECCCCEEEEC-CCCCCHHHHCCCCCCEEEEECCCC T ss_conf 89689996367279883-309885882678126299983699 No 89 >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} Probab=83.63 E-value=0.57 Score=24.76 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=40.6 Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEE Q ss_conf 45547989999987666543102334610037723898515321422101311588716898446312358778937895 Q gi|254780674|r 306 QADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVA 385 (423) Q Consensus 306 ~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~ 385 (423) -.|++++.++.+.++.+..+...-++ +-+|| ++..|+..|.... +=.+++|+....+-+ T Consensus 222 ~LDn~s~e~l~~~v~~l~~~~~~v~i---eaSGG-I~~~ni~~ya~~G---------VD~is~G~lt~~a~~-------- 280 (299) T 2jbm_A 222 LLDNFKPEELHPTATVLKAQFPSVAV---EASGG-ITLDNLPQFCGPH---------IDVISMGMLTQAAPA-------- 280 (299) T ss_dssp EEESCCHHHHHHHHHHHHHHCTTSEE---EEESS-CCTTTHHHHCCTT---------CCEEECTHHHHSCCC-------- T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEE---EEECC-CCHHHHHHHHHCC---------CCEEECCHHHCCCCC-------- T ss_conf 98088999999999998464897699---99899-9999999999729---------899982965459986-------- Q ss_pred EEEEEEEEEEECEEEHHHHHHH Q ss_conf 4889898520011402889999 Q gi|254780674|r 386 TIMNATLSADHRSVDGAIASKL 407 (423) Q Consensus 386 ~~~~ltls~DHRvidGa~aa~F 407 (423) +-+|.|=...+|+..+.| T Consensus 281 ----~D~sl~i~~~~~~p~~k~ 298 (299) T 2jbm_A 281 ----LDFSLKLFAKEVAPVPKI 298 (299) T ss_dssp ----CCEEEEEEEEC------- T ss_pred ----CCEEEEEEECCCCCCCCC T ss_conf ----431799775588777777 No 90 >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Probab=83.51 E-value=0.12 Score=29.38 Aligned_cols=33 Identities=12% Similarity=0.257 Sum_probs=28.1 Q ss_pred CCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC Q ss_conf 8786899999248860403585599997075421 Q gi|254780674|r 52 VDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423) Q Consensus 52 ~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423) -.+|+|.+|++++| |.|..|++|+.+++++... T Consensus 14 ~~~g~i~~w~v~~G-d~V~~gd~l~eiEtdK~~~ 46 (80) T 1pmr_A 14 VADATVATWHKKPG-DAVVRDEVLVEIETDKVVL 46 (80) T ss_dssp CSCEECCBCCCCTT-CCBSSSCCBCBCCSSSCCC T ss_pred CCEEEEEEEEECCC-CEECCCCEEEEEECCCEEE T ss_conf 75899999990798-9987999899999386589 No 91 >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, quinolinic acid; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* Probab=83.44 E-value=0.92 Score=23.38 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=18.1 Q ss_pred EEEEECCCCCEEECCCEEEEEECCCC Q ss_conf 99992488604035855999970754 Q gi|254780674|r 58 DEILVPAGTENIAVNSPILNILMDST 83 (423) Q Consensus 58 ~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423) ..+++++| +.+.-|++|+.+..+.. T Consensus 73 v~~~~~dG-~~v~~g~~il~i~G~~~ 97 (284) T 1qpo_A 73 VLDRVEDG-ARVPPGEALMTLEAQTR 97 (284) T ss_dssp EEEECCTT-CEECTTCEEEEEEEEHH T ss_pred EEEECCCC-CEEECCCEEEEEEECHH T ss_conf 98882889-99864867999998899 No 92 >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} Probab=82.72 E-value=0.77 Score=23.89 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=22.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCC Q ss_conf 455479899999876665431023346100377238985153214 Q gi|254780674|r 306 QADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLG 350 (423) Q Consensus 306 ~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g 350 (423) -.|++++.++.+.++.+..+. . =+.+|| +++.|+..|. T Consensus 221 ~LDn~~~e~i~~~v~~~~~~v-----~-ieaSGG-I~~~ni~~ya 258 (286) T 1x1o_A 221 LLDNFPLEALREAVRRVGGRV-----P-LEASGN-MTLERAKAAA 258 (286) T ss_dssp EEESCCHHHHHHHHHHHTTSS-----C-EEEESS-CCHHHHHHHH T ss_pred EECCCCHHHHHHHHHHHCCCE-----E-EEEECC-CCHHHHHHHH T ss_conf 328989999999999877966-----9-999799-9999999999 No 93 >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* Probab=82.59 E-value=1 Score=23.02 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=17.8 Q ss_pred EEEEECCCCCEEECCCEEEEEECCCC Q ss_conf 99992488604035855999970754 Q gi|254780674|r 58 DEILVPAGTENIAVNSPILNILMDST 83 (423) Q Consensus 58 ~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423) ..+++++| +.+.-|++|+.+..+.. T Consensus 60 v~~~~~dG-~~v~~g~~Il~i~G~~~ 84 (273) T 2b7n_A 60 CVQTIKDK-ERFKPKDALMEIRGDFS 84 (273) T ss_dssp EEEECCTT-CEECTTCEEEEEEEEHH T ss_pred CEEEECCC-CEEECCCEEEEEEEHHH T ss_conf 08973376-37508989999986099 No 94 >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} Probab=81.74 E-value=0.88 Score=23.50 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=15.1 Q ss_pred EEEEECCCCCEEECCCEEEEEECCCC Q ss_conf 99992488604035855999970754 Q gi|254780674|r 58 DEILVPAGTENIAVNSPILNILMDST 83 (423) Q Consensus 58 ~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423) .++++++| +.+.-|++|+.+..... T Consensus 88 v~~~~~dG-~~v~~g~~i~~i~G~~~ 112 (298) T 3gnn_A 88 VDWRHREG-DRMSADSTVCELRGPAR 112 (298) T ss_dssp EEESSCTT-CEECTTCEEEEEEEEHH T ss_pred EEEECCCC-CEEECCCEEEEEEECHH T ss_conf 87664889-89637988999996799 No 95 >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Probab=81.03 E-value=0.99 Score=23.17 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=27.4 Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEE Q ss_conf 45547989999987666543102334610037723898515321422101311588716898446312 Q gi|254780674|r 306 QADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEK 373 (423) Q Consensus 306 ~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~ 373 (423) -.|++++.++.+.++.+.. +.. =+-+ |.++.+|+-.|..... =++++|+... T Consensus 233 ~lDn~~~~~l~~~V~~~~~-----~v~-ieaS-GGI~~~ni~~ya~~GV---------D~Is~g~lt~ 284 (296) T 1qap_A 233 MLDNFNTDQMREAVKRVNG-----QAR-LEVS-GNVTAETLREFAETGV---------DFISVGALTK 284 (296) T ss_dssp EESSCCHHHHHHHHHTTCT-----TCC-EEEC-CCSCHHHHHHHHHTTC---------SEEECSHHHH T ss_pred EECCCCHHHHHHHHHHHCC-----CEE-EEEE-CCCCHHHHHHHHHCCC---------CEEECCHHHC T ss_conf 8648999999999998579-----679-9997-9999999999997698---------9998285546 No 96 >2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli} Probab=80.84 E-value=1.6 Score=21.71 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=17.8 Q ss_pred EEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEE Q ss_conf 981689785279859999526531245368786899 Q gi|254780674|r 23 WIKQEGDKISPGDILCEIETDKAIMEFESVDEGIID 58 (423) Q Consensus 23 Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~ 58 (423) .++++||.|++||.||+- |--+.-+=|..+|++. T Consensus 64 L~VkdG~~Vk~g~~la~W--DP~~~pIisE~~G~v~ 97 (190) T 2auk_A 64 LAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 97 (190) T ss_dssp ESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEE T ss_pred EEECCCCEECCCCEEEEE--CCCCCEEEEEEEEEEE T ss_conf 998698997389899986--7988528888612899 No 97 >1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Probab=80.44 E-value=0.9 Score=23.44 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=16.0 Q ss_pred EEEEECCCCCEEECCCEEEEEECCCC Q ss_conf 99992488604035855999970754 Q gi|254780674|r 58 DEILVPAGTENIAVNSPILNILMDST 83 (423) Q Consensus 58 ~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423) .++++++| +.+.-|++|+.+..+.. T Consensus 73 v~~~~~dG-~~v~~g~~i~~i~G~~~ 97 (285) T 1o4u_A 73 SKFNVEDG-EYLEGTGVIGEIEGNTY 97 (285) T ss_dssp EEESCCTT-CEEESCEEEEEEEEEHH T ss_pred EEEEECCC-CEECCCCEEEEEEECHH T ss_conf 99992799-88217837899996689 No 98 >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Probab=78.11 E-value=1.5 Score=21.98 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=30.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEE Q ss_conf 4554798999998766654310233461003772389851532142210131158871689844631235 Q gi|254780674|r 306 QADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKV 375 (423) Q Consensus 306 ~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~ 375 (423) -.|++++.++.+.+..+..+. .=+.+| .++..|+..|..... -++++|+..... T Consensus 232 mLDn~~~~~~~~~v~~i~~~v------~ieaSG-GI~~~ni~~yA~~GV---------D~IS~G~lt~sa 285 (300) T 3l0g_A 232 LLDNMSISEIKKAVDIVNGKS------VLEVSG-CVNIRNVRNIALTGV---------DYISIGCITNSF 285 (300) T ss_dssp EEESCCHHHHHHHHHHHTTSS------EEEEES-SCCTTTHHHHHTTTC---------SEEECGGGTSSC T ss_pred ECCCCCHHHHHHHHHHHCCCE------EEEEEC-CCCHHHHHHHHHCCC---------CEEECCHHHCCC T ss_conf 608999899999999857967------999979-999999999997599---------999869766699 No 99 >2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina} Probab=76.33 E-value=2.4 Score=20.59 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=26.2 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCCC--------CCCC-CCCEEEEEC---CCCCCCC Q ss_conf 41455479899999876665431023346--------1003-772389851---5321422 Q gi|254780674|r 304 IRQADQKSILDISLEVKQLAQRAKQRKLK--------PEEY-QGGTTSISN---MGMLGIN 352 (423) Q Consensus 304 Ik~ad~~~l~~i~~~~~~l~~~ar~~~l~--------~~d~-~ggtftiSN---lG~~g~~ 352 (423) ++.....++.+++..+++.+.++.+.... ..++ .+.++++|| +|.|+.+ T Consensus 302 ~~~~~~~~l~~~a~~ir~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~vssw~r~~~y~~D 362 (421) T 2bgh_A 302 VDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQELLSFTSWCRLGFYDLD 362 (421) T ss_dssp ECTTCCCCGGGGHHHHHHHTCCCSSCHHHHHHHHHHHHHTSCGGGEEEEEEETTSCGGGCC T ss_pred ECHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEE T ss_conf 0244318458999999999999999998999865467650478973999378999867601 No 100 >2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxynivalenol, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A* Probab=75.77 E-value=2.5 Score=20.43 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=10.4 Q ss_pred ECCCCCCHHHHHHHHHHHH Q ss_conf 1455479899999876665 Q gi|254780674|r 305 RQADQKSILDISLEVKQLA 323 (423) Q Consensus 305 k~ad~~~l~~i~~~~~~l~ 323 (423) .+....++..++..+++-. T Consensus 320 ~~l~~~~l~~~A~~Ir~~~ 338 (451) T 2rkv_A 320 GEIANESLGATASRLRSEL 338 (451) T ss_dssp HHHHHSCHHHHHHHHHTTC T ss_pred HHHCCCCHHHHHHHHHHHH T ss_conf 7751385999999999999 No 101 >1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2 Probab=63.86 E-value=5.4 Score=18.25 Aligned_cols=99 Identities=8% Similarity=0.125 Sum_probs=45.2 Q ss_pred CCCCCCCCCHHHHHHHHHHCCC---CCCCC---CCCCCEEC---CCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHH Q ss_conf 6554322210111001100000---00011---23441012---556654156514642020341455479899999876 Q gi|254780674|r 250 NKISVNDIILKAFALAMIQVPE---ANVSW---TTNAMIRH---KHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVK 320 (423) Q Consensus 250 ~kit~~~~l~kA~a~AL~~~P~---~Na~~---~~~~i~~~---~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~ 320 (423) .++|++.++.-|++.+|.++-. ....+ ..+.-... ..-.+|..+ |++.-.+.=....++.++++.+. T Consensus 233 ~g~T~~~~l~aa~~~~l~~~~~~~~~~~~~~~~v~~R~~~~~~~~~~~~~~~~----g~~~~~l~v~~~~~~~~~~~~~~ 308 (422) T 1q9j_A 233 HRLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLL----GAASYLAEIGPNTDIVDLASDIV 308 (422) T ss_dssp TTCCHHHHHHHHHHHHHHHHHTCSSCCEEEEEEEETTTTSSSCCCTTTBSCCE----EEEEEEECCCSSCCHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHCEE----EEEEEEEECCCCCCHHHHHHHHH T ss_conf 39999999999999999998798987999326563888876787776542320----41468896168999899999999 Q ss_pred HHHHHH-CCCCCCCC------------CCCCCEEEEECCCCCCCC Q ss_conf 665431-02334610------------037723898515321422 Q gi|254780674|r 321 QLAQRA-KQRKLKPE------------EYQGGTTSISNMGMLGIN 352 (423) Q Consensus 321 ~l~~~a-r~~~l~~~------------d~~ggtftiSNlG~~g~~ 352 (423) +..... +.+....+ .....++.+||+|.+... T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~ 353 (422) T 1q9j_A 309 ATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTM 353 (422) T ss_dssp HHHHHHHHHTHHHHSCCBGGGGGGCCCSSSCCCEEEECCCCCCSC T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCC T ss_conf 999999971623688887654302677777867999927887755 No 102 >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* Probab=62.33 E-value=3.8 Score=19.25 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=27.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHHCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEE Q ss_conf 45547989999987666543102-334610037723898515321422101311588716898446312 Q gi|254780674|r 306 QADQKSILDISLEVKQLAQRAKQ-RKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEK 373 (423) Q Consensus 306 ~ad~~~l~~i~~~~~~l~~~ar~-~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~ 373 (423) -.|++++.++.+.+..+..+... .+.. =+-+ |.++..|+-.|.....+ ++++|+... T Consensus 224 ~LDn~~~~~~k~~v~~l~~~~~~~~~v~-ieaS-GGI~~~ni~~ya~tGvD---------~Is~g~lt~ 281 (294) T 3c2e_A 224 MLDNFKGDGLKMCAQSLKNKWNGKKHFL-LECS-GGLNLDNLEEYLCDDID---------IYSTSSIHQ 281 (294) T ss_dssp ECCC---------------------CCE-EEEE-CCCCC------CCCSCS---------EEECGGGTS T ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCEE-EEEE-CCCCHHHHHHHHHCCCC---------EEEECHHHC T ss_conf 3268997999999999987754488579-9998-99999999999984989---------999397771 No 103 >2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A Probab=60.23 E-value=7.6 Score=17.24 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=12.5 Q ss_pred EHHHHHHHHHHHHHHHCC Q ss_conf 028899999999998719 Q gi|254780674|r 400 DGAIASKLLAKFKEYIEN 417 (423) Q Consensus 400 dGa~aa~Fl~~~~~~le~ 417 (423) .-.+.-+|.+.|.+.|+. T Consensus 435 ~~~~me~f~~~f~~~L~~ 452 (454) T 2e1v_A 435 SATQMEDFVHIFDDGLKA 452 (454) T ss_dssp EHHHHHHHHHHHHHHC-- T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 999999999999998870 No 104 >2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1} Probab=56.86 E-value=5.1 Score=18.40 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=7.1 Q ss_pred CCCCCEEEEECCC Q ss_conf 5665415651464 Q gi|254780674|r 286 HIDISVAVSIPGG 298 (423) Q Consensus 286 ~vnIgiAv~~~~G 298 (423) ..|-||-++.+.| T Consensus 178 ~~h~GiDi~~~~g 190 (282) T 2hsi_A 178 NPHSGLDFAVPAG 190 (282) T ss_dssp -CCCSEEECCCTT T ss_pred CCCCEEEEECCCC T ss_conf 7401259974899 No 105 >2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} Probab=54.97 E-value=5.8 Score=18.01 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=15.3 Q ss_pred ECEEEHHHHHHHHHHHHHH Q ss_conf 0114028899999999998 Q gi|254780674|r 396 HRSVDGAIASKLLAKFKEY 414 (423) Q Consensus 396 HRvidGa~aa~Fl~~~~~~ 414 (423) .+-+.+.+-++|+...+++ T Consensus 333 ~~~l~~~~~~~f~~~~~~~ 351 (361) T 2gu1_A 333 AKSLSSNQKTSFLARVSEF 351 (361) T ss_dssp ------------------- T ss_pred CCCCCHHHHHHHHHHHHHH T ss_conf 8878989999999999998 No 106 >2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Probab=48.39 E-value=7.7 Score=17.19 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=15.9 Q ss_pred EEECCCCCEEECCCEEEEEECCC Q ss_conf 99248860403585599997075 Q gi|254780674|r 60 ILVPAGTENIAVNSPILNILMDS 82 (423) Q Consensus 60 i~v~eG~e~v~VG~~i~~i~~~~ 82 (423) ..++|| +.+..|+|++.|.... T Consensus 80 ~av~EG-~~v~~g~pil~I~G~~ 101 (395) T 2i14_A 80 YAMPEG-TIFHPYEPVLQIEGDY 101 (395) T ss_dssp EECCTT-CEECTTSCSEEEEEEH T ss_pred EECCCC-CEECCCCEEEEEEECH T ss_conf 981797-3865997699998279 No 107 >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 Probab=44.27 E-value=13 Score=15.58 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=24.3 Q ss_pred EEEEEEEEECEEEHHHHHHHHH----HHHHHHCCHHHH Q ss_conf 8989852001140288999999----999987198897 Q gi|254780674|r 388 MNATLSADHRSVDGAIASKLLA----KFKEYIENPVWM 421 (423) Q Consensus 388 ~~ltls~DHRvidGa~aa~Fl~----~~~~~le~P~~l 421 (423) +.+.+.||-++.+...+.+|+. .+.+++++|... T Consensus 374 l~l~~~y~~~~~~~~~i~~l~~~f~~~l~~~~~~p~~~ 411 (436) T 1l5a_A 374 LCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQV 411 (436) T ss_dssp EEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999982334899999999999999999999682875 No 108 >3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivalenol, T-2 toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A* Probab=35.10 E-value=19 Score=14.65 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=29.4 Q ss_pred EEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCH Q ss_conf 488989852001140288999999999987198 Q gi|254780674|r 386 TIMNATLSADHRSVDGAIASKLLAKFKEYIENP 418 (423) Q Consensus 386 ~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P 418 (423) .-+.+++.||-...+-..+.+|++.+.++|+.- T Consensus 485 g~l~l~~~Y~~~~~~~~~v~~~l~~~~~~L~~F 517 (519) T 3fot_A 485 DASTLNIIYNDANYTEAEVQKYLQSIVEFMLAF 517 (519) T ss_dssp TEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHT T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 989999998865449999999999999999973 No 109 >1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B* Probab=25.90 E-value=12 Score=16.02 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=8.5 Q ss_pred CCCCCCCEEEEEECCCEEEEEEE Q ss_conf 31158871689844631235877 Q gi|254780674|r 356 AVINPPQSTILAIGAGEKKVVFQ 378 (423) Q Consensus 356 pii~~pq~aILgvG~~~~~~~~~ 378 (423) |+-|-|-|+ |+|....+.|.+ T Consensus 226 pLTnnPNVG--GFGQ~e~EIVLQ 246 (252) T 1hcz_A 226 PLTSNPNVG--GFGQGDAEIVLQ 246 (252) T ss_dssp BSBCCCCCC--EEEEEEEEEEEC T ss_pred CCCCCCCCC--CCCCCCEEEEEC T ss_conf 665699866--667662499812 No 110 >3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus} Probab=23.44 E-value=29 Score=13.33 Aligned_cols=18 Identities=11% Similarity=-0.060 Sum_probs=9.9 Q ss_pred CHHHHHHHHHHCCCCCCC Q ss_conf 101110011000000001 Q gi|254780674|r 258 ILKAFALAMIQVPEANVS 275 (423) Q Consensus 258 l~kA~a~AL~~~P~~Na~ 275 (423) -.+++-..+..||.-++. T Consensus 83 ~~~~~~~~~~~~P~~~~~ 100 (252) T 3nyy_A 83 SCRAIWNDVKYFPIPQSL 100 (252) T ss_dssp HHHHHHTTCCSCSSCEES T ss_pred HHHHHHHHCEECCCCCCC T ss_conf 114554210156578766 Done!