RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
(423 letters)
>gnl|CDD|35777 KOG0557, KOG0557, KOG0557, Dihydrolipoamide acetyltransferase
[Energy production and conversion].
Length = 470
Score = 381 bits (979), Expect = e-106
Identities = 192/445 (43%), Positives = 272/445 (61%), Gaps = 40/445 (8%)
Query: 5 TITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64
T +MP+LSPTM EG + W K+EGDK+S GD+L E+ETDKA M+ E+ D+G + +IL+
Sbjct: 40 TFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEE 99
Query: 65 GTENIAVNSPILNILMDSTEI-------------------PPSPPLSKENIVEVREEHSH 105
G++++ V PI I+ D +I P P K E S
Sbjct: 100 GSKDVPVGKPIAIIVEDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSK 159
Query: 106 SSPVVVREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLI---STKT 162
S + + R ASPLA++LA E G++LSS+ G+GPHGRI+K DIE + K+
Sbjct: 160 PSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSIPGTGPHGRILKGDIEKHVGSGKKKS 219
Query: 163 NVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVS 222
++ A + YE IP N+R+ IA RL +SKQTIPH+YV+
Sbjct: 220 AKAPKASAPPP--------APAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVT 271
Query: 223 IDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMI 282
+D N+D LL+LRE++N E+ K+S+ND+I KA ALA+ +VPE N SW +I
Sbjct: 272 VDVNLDKLLALREKLNF------EKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVI 325
Query: 283 RH-KHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTT 341
R +DISVAV+ P G++TPII+ AD K + IS +VK+LAQ+A++ KL+PEE+QGGT
Sbjct: 326 RQLSSVDISVAVATPNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTF 385
Query: 342 SISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQ---NEEIKVATIMNATLSADHRS 398
++SN+GM G++ F A+INPPQ+ ILA+GA VV E+ V M TLSADHR
Sbjct: 386 TLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVINAMTVTLSADHRV 445
Query: 399 VDGAIASKLLAKFKEYIENPVWMLM 423
VDGA+A++ L +FKE +ENP ++L+
Sbjct: 446 VDGAVAARFLDEFKENLENPEFLLL 470
>gnl|CDD|30854 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 349 bits (896), Expect = 1e-96
Identities = 157/424 (37%), Positives = 233/424 (54%), Gaps = 23/424 (5%)
Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61
M I MP L TMTEG + +W+K+ GDK+ GD+L E+ETDKA ME + D G++ +IL
Sbjct: 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60
Query: 62 VPAGTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPI 121
V G + V + I I + + P + E + +S + R +
Sbjct: 61 VEEGDT-VPVGAVIARIEEEGADAPAAAEAPPE-----PAAAAPASAPATAASAAAGRVL 114
Query: 122 ASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESID 181
ASP RRLA E GIDLS + G+GP GRI K D+E ++ K +
Sbjct: 115 ASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPA----- 169
Query: 182 ANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTL 241
A E +P IRK IA R+ +SKQTIPH + + ++ L++LR+++
Sbjct: 170 ------SAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEE- 222
Query: 242 QFHREEISNKISVNDIILKAFALAMIQVPEANVSW--TTNAMIRHKHIDISVAVSIPGGI 299
E+ K++ ++KA A+ + PE N S ++ HK+++I +AV P G+
Sbjct: 223 ---FEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGL 279
Query: 300 VTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVIN 359
V P+IR AD+KS+ +I+ E+K LA++A+ KL PEE QGGT +ISN+GM G F +IN
Sbjct: 280 VVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIIN 339
Query: 360 PPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPV 419
PPQ IL +GA E++ V EI V +M +LS DHR +DGA A++ L KE +E+P
Sbjct: 340 PPQVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDPE 399
Query: 420 WMLM 423
+L+
Sbjct: 400 RLLL 403
>gnl|CDD|143956 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase
(catalytic domain). These proteins contain one to three
copies of a lipoyl binding domain followed by the
catalytic domain.
Length = 231
Score = 289 bits (743), Expect = 7e-79
Identities = 100/233 (42%), Positives = 153/233 (65%), Gaps = 5/233 (2%)
Query: 192 SYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNK 251
+P IRK IA R+ +SKQTIPHF ++ + ++ LL+LRE++ ++ K
Sbjct: 3 EETRVPLSGIRKAIAKRMTESKQTIPHFTLTDEVDVTALLALREELKA----DAKDEGLK 58
Query: 252 ISVNDIILKAFALAMIQVPEANVSWTTNA-MIRHKHIDISVAVSIPGGIVTPIIRQADQK 310
++ ++KA ALA+ + PE N SW A ++ K+++I +AV+ P G++ P+IR AD+K
Sbjct: 59 LTFLPFLVKAVALALKKFPELNASWDGEAEIVYKKYVNIGIAVATPDGLIVPVIRNADRK 118
Query: 311 SILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGA 370
S+L+I+ E+K LA+RA++ KLKPE+ QGGT +ISN+GM G+ F +INPPQ IL +GA
Sbjct: 119 SLLEIAKEIKDLAERAREGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGA 178
Query: 371 GEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423
K+ V N EI + +M +LS DHR +DGA A++ L KE +ENP +L+
Sbjct: 179 IRKRPVVVNGEIVIRKVMTLSLSFDHRVIDGAEAARFLNDLKELLENPELLLL 231
>gnl|CDD|35778 KOG0558, KOG0558, KOG0558, Dihydrolipoamide transacylase
(alpha-keto acid dehydrogenase E2 subunit) [Energy
production and conversion].
Length = 474
Score = 184 bits (467), Expect = 5e-47
Identities = 118/413 (28%), Positives = 206/413 (49%), Gaps = 25/413 (6%)
Query: 17 EGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPIL 76
E + +W +EGD + D LCE+++DKA + S +G + +I + V P++
Sbjct: 78 EVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPD-DIAKVGKPLV 136
Query: 77 NILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPIASPLARRLAGEHGID 136
++ ++ ++ SP S E+ E S + +A+P RRLA E+GID
Sbjct: 137 DLEVEDSQ--DSPEDSDESPAVSLGESKQGE-------ESLLKTLATPAVRRLAKENGID 187
Query: 137 LSSLSGSGPHGRIVKSDIETLISTKT--NVKDYSTIQSFGLVDESIDANILNLFAKDSYE 194
L+ ++G+G GR++K D+ + + + NL A +
Sbjct: 188 LAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEAD---K 244
Query: 195 VIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISV 254
+P + + + ++ + IPHF + N D+L+ LR++ L+ + +E K++
Sbjct: 245 TVPLRGFSRAMVKTMTEALK-IPHFGYVDEINCDSLVKLRQE----LKENAKERGIKLTF 299
Query: 255 NDIILKAFALAMIQVPEANVSWTTNAM-IRHK--HIDISVAVSIPGGIVTPIIRQADQKS 311
+KA +LA+++ P N S+ + I K H +I VA+ G+V P I+ S
Sbjct: 300 MPFFIKAASLALLKYPIVNSSFDEESENIILKGSH-NIGVAMDTEQGLVVPNIKNVQSLS 358
Query: 312 ILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAG 371
I +I+ E+ +L + +L PE+ GGT ++SN+G +G VI PP+ I A+G
Sbjct: 359 IFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRI 418
Query: 372 EKKVVF-QNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423
EK F + E+ A+IM + SADHR +DGA ++ ++KEY+ENP ML+
Sbjct: 419 EKVPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALMLL 471
>gnl|CDD|35779 KOG0559, KOG0559, KOG0559, Dihydrolipoamide succinyltransferase
(2-oxoglutarate dehydrogenase, E2 subunit) [Energy
production and conversion].
Length = 457
Score = 161 bits (408), Expect = 4e-40
Identities = 111/423 (26%), Positives = 186/423 (43%), Gaps = 45/423 (10%)
Query: 5 TITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64
T+ +P + ++TEG LA+W+K+ GD+++ + + EIETDK +E S G+I E+LV
Sbjct: 74 TVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKD 133
Query: 65 GTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPIASP 124
G + + + I P S E + + ++P + SK P +
Sbjct: 134 G-DTVTPGQKLAKI--SPGAAPAKGGASAPAKAEPKTAPAAAAP---PKPSSKPPPKEAA 187
Query: 125 LARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESIDANI 184
+ S P K ++ K + +T
Sbjct: 188 PVAESP-------PAPSSPEPVPASAKK--PSVAQPKPPPSEGAT--------------- 223
Query: 185 LNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFH 244
S + + +R IA RL+ S+ T + ++ NL+ +R+Q +
Sbjct: 224 ----PSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQ-------Y 272
Query: 245 REEISNKISVN----DIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIV 300
++ K V KA A A+ P N + ++ ++DISVAV+ P G+V
Sbjct: 273 KDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLV 332
Query: 301 TPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINP 360
P+IR A+ + DI + L ++A+ KL E+ GGT +ISN G+ G +INP
Sbjct: 333 VPVIRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINP 392
Query: 361 PQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW 420
PQS IL + +++ V ++ +M L+ DHR +DG A L K KE +E+P
Sbjct: 393 PQSAILGMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKEAVEDPRK 452
Query: 421 MLM 423
ML+
Sbjct: 453 MLL 455
>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases. 2-oxo acid dehydrogenase multienzyme
complexes, like pyruvate dehydrogenase (PDH),
2-oxoglutarate dehydrogenase (OGDH) and branched-chain
2-oxo acid dehydrogenase (BCDH), contain at least three
different enzymes, 2-oxo acid dehydrogenase (E1),
dihydrolipoyl acyltransferase (E2) and dihydrolipoamide
dehydrogenase (E3) and play a key role in redox
regulation. E2, the central component of the complex,
catalyzes the transfer of the acyl group of CoA from E1
to E3 via reductive acetylation of a lipoyl group
covalently attached to a lysine residue.
Length = 74
Score = 99.8 bits (250), Expect = 1e-21
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 5 TITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64
I MP L +MTEG + +W+ +EGD + GD+L E+ETDKA +E E+ G++ +ILV
Sbjct: 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEE 61
Query: 65 GTENIAVNSPILNI 78
G + V I I
Sbjct: 62 GDT-VPVGQVIAVI 74
>gnl|CDD|111687 pfam02817, E3_binding, e3 binding domain. This family represents a
small domain of the E2 subunit of 2-oxo-acid
dehydrogenases responsible for the binding of the E3
subunit.
Length = 39
Score = 71.7 bits (177), Expect = 4e-13
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 118 NRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIE 155
R ASP AR+LA E GIDLS + G+GP GRI K D+
Sbjct: 1 GRVFASPAARKLAAEKGIDLSQVKGTGPGGRITKEDVL 38
>gnl|CDD|144088 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. This family
covers two Prosite entries, the conserved lysine
residue binds biotin in one group and lipoic acid in
the other. Note that the model may not recognize the
Glycine cleavage system H proteins.
Length = 73
Score = 69.2 bits (170), Expect = 2e-12
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 4 HTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVP 63
I P + ++ EG A+W+ + GDK+ G +LCE+E K ME + G++ EILV
Sbjct: 1 TEIKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVK 59
Query: 64 AGTENIAVNSPILNI 78
G + V P+ I
Sbjct: 60 EGDT-VEVGDPLAKI 73
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are
present in biotin-dependent
carboxylases/decarboxylases, the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases, and the H-protein of the glycine
cleavage system (GCS). These domains transport CO2,
acyl, or methylamine, respectively, between components
of the complex/protein via a biotinyl or lipoyl group,
which is covalently attached to a highly conserved
lysine residue.
Length = 73
Score = 65.5 bits (160), Expect = 3e-11
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 5 TITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64
TI +P L+ + +G + KW+K+ GDK+ GD+L EIE KA + E+ G + ++LV
Sbjct: 1 TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE 60
Query: 65 GTE 67
GT+
Sbjct: 61 GTK 63
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
carrier protein (BCCP) domain is present in all
biotin-dependent enzymes, such as acetyl-CoA
carboxylase, pyruvate carboxylase, propionyl-CoA
carboxylase, methylcrotonyl-CoA carboxylase,
geranyl-CoA carboxylase, oxaloacetate decarboxylase,
methylmalonyl-CoA decarboxylase, transcarboxylase and
urea amidolyase. This domain functions in transferring
CO2 from one subsite to another, allowing
carboxylation, decarboxylation, or transcarboxylation.
During this process, biotin is covalently attached to a
specific lysine.
Length = 67
Score = 41.6 bits (99), Expect = 4e-04
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILN 77
G + K + +EGDK+ G L +E K E + G++ EILV G + + ++
Sbjct: 8 GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEG-DQVEAGQLLVV 66
Query: 78 I 78
I
Sbjct: 67 I 67
>gnl|CDD|30857 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
Length = 140
Score = 39.7 bits (92), Expect = 0.002
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILN 77
G + K + GD + G L IE K E E+ +G++ EILV G + + P+
Sbjct: 79 GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNG-DPVEYGDPLAV 137
Query: 78 I 78
I
Sbjct: 138 I 138
>gnl|CDD|35589 KOG0368, KOG0368, KOG0368, Acetyl-CoA carboxylase [Lipid transport
and metabolism].
Length = 2196
Score = 36.1 bits (83), Expect = 0.016
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 9 PSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVP 63
P++ + + GKL +++ ++G+ + G EIE K +M + + G I I
Sbjct: 685 PTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLIKQE 739
>gnl|CDD|34894 COG5306, COG5306, Uncharacterized conserved protein [Function
unknown].
Length = 621
Score = 30.8 bits (69), Expect = 0.85
Identities = 35/193 (18%), Positives = 54/193 (27%), Gaps = 14/193 (7%)
Query: 163 NVKDYSTIQSFGLVDESID--ANILNLFAKDSYEVIPH----DNIRKTIACRLQQSKQTI 216
N D T S SI+ NI L Y + P DN TI + I
Sbjct: 68 NYDDNFTNASLIRRGLSIEGYDNISELLKAQGYILYPFVEPLDNPNITILDKCGDIVYNI 127
Query: 217 PHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSW 276
+ + + + ++HR IIL A I+ E ++ +
Sbjct: 128 S---SNGSYTYSFVDITLDSAMTSGRYHRLIAGPLFGQRPIILGNGAGESIRYGETHIYF 184
Query: 277 TTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRA-KQRKLKPEE 335
T N+ I V P Q + +I + + L
Sbjct: 185 TINSEF----IKWGYRVFTNIDEFPPYTWQGYRTNITIKNNLNQNLTDYHNPIFIFDTTN 240
Query: 336 YQGGTTSISNMGM 348
G S N +
Sbjct: 241 RTGSDDSFKNGAV 253
>gnl|CDD|36299 KOG1083, KOG1083, KOG1083, Putative transcription factor
ASH1/LIN-59 [Transcription].
Length = 1306
Score = 30.1 bits (67), Expect = 1.2
Identities = 27/145 (18%), Positives = 46/145 (31%), Gaps = 3/145 (2%)
Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESV--DEGIIDEILVP 63
I PSL PT + K + +KI P L T + + + EG + VP
Sbjct: 256 IKAPSLDPTNHKRKKRQSPPAVSEKIMPNKALASSITMSSEVVNRILSNSEGNNKDPRVP 315
Query: 64 AGTENIAVNSPILNILMDSTEIPPSPPL-SKENIVEVREEHSHSSPVVVREKHSKNRPIA 122
++ I SP + + P SK +++ H HS + E
Sbjct: 316 KLSKMIENESPSVGLETSKNAEKVIPGGSSKPSVMTPPSCHDHSPSRKLPESQHSKFAAK 375
Query: 123 SPLARRLAGEHGIDLSSLSGSGPHG 147
+ + ++ S
Sbjct: 376 RRWTCSKPKKSCMLREAVMASSDSL 400
>gnl|CDD|31240 COG1038, PycA, Pyruvate carboxylase [Energy production and
conversion].
Length = 1149
Score = 29.1 bits (65), Expect = 2.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 27 EGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTE 67
+GDK+ GD+L IE K + +G + E+LV G +
Sbjct: 1097 KGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ 1137
>gnl|CDD|146747 pfam04275, P-mevalo_kinase, Phosphomevalonate kinase.
Phosphomevalonate kinase (EC:2.7.4.2) catalyses the
phosphorylation of 5-phosphomevalonate into
5-diphosphomevalonate, an essential step in isoprenoid
biosynthesis via the mevalonate pathway. This family
represents the animal type of the enzyme. The other is
the ERG8 type, found in plants and fungi, and some
bacteria (see pfam00288).
Length = 115
Score = 29.2 bits (66), Expect = 2.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 121 IASPLARRLAGEHGIDLSSLSGSGPH 146
I+ P+ A +HG+DL L G GP+
Sbjct: 30 ISEPIKEEWAKKHGLDLEELLGDGPY 55
>gnl|CDD|30855 COG0509, GcvH, Glycine cleavage system H protein
(lipoate-binding) [Amino acid transport and
metabolism].
Length = 131
Score = 29.0 bits (65), Expect = 2.5
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 24 IKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI 60
+ + G ++ G+ L +E+ KA + + G + E+
Sbjct: 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEV 82
>gnl|CDD|145743 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase,
N-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de
novo synthesis of NAD in both prokaryotes and
eukaryotes. It catalyses the reaction of quinolinic
acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in
the presence of Mg2+ to give rise to nicotinic acid
mononucleotide (NaMN), pyrophosphate and carbon
dioxide. The QA substrate is bound between the
C-terminal domain of one subunit, and the N-terminal
domain of the other. The N-terminal domain has an
alpha/beta hammerhead fold.
Length = 88
Score = 29.0 bits (66), Expect = 2.7
Identities = 7/21 (33%), Positives = 16/21 (76%)
Query: 21 AKWIKQEGDKISPGDILCEIE 41
+W+ ++G+++ GD++ EIE
Sbjct: 47 VEWLVKDGERVEAGDVILEIE 67
>gnl|CDD|110591 pfam01597, GCV_H, Glycine cleavage H-protein. This is a family
of glycine cleavage H-proteins, part of the glycine
cleavage multienzyme complex (GCV) found in bacteria
and the mitochondria of eukaryotes. GCV catalyses the
catabolism of glycine in eukaryotes. A lipoyl group is
attached to a completely conserved lysine residue. The
H protein shuttles the methylamine group of glycine
from the P protein to the T protein.
Length = 122
Score = 28.8 bits (65), Expect = 3.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 24 IKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI 60
+ + G K+ G+ L +E+ KA E + G + E+
Sbjct: 38 LPEVGTKVKKGESLGAVESVKAASEVYAPVSGEVVEV 74
>gnl|CDD|145480 pfam02353, CMAS, Cyclopropane-fatty-acyl-phospholipid synthase.
This family consist of
Cyclopropane-fatty-acyl-phospholipid synthase or CFA
synthase EC:2.1.1.79 this enzyme catalyse the reaction:
S-adenosyl-L-methionine + phospholipid olefinic fatty
acid <=> S-adenosyl-L-homocysteine + phospholipid
cyclopropane fatty acid.
Length = 273
Score = 28.8 bits (65), Expect = 3.2
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIET 42
M++HTIT T G K+I + I PG L I
Sbjct: 162 MLLHTITGLHPDETSERGLPLKFIDKY---IFPGGELPSISM 200
>gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage
H-proteins are part of the glycine cleavage system
(GCS) found in bacteria, archea and the mitochondria of
eukaryotes. GCS is a multienzyme complex consisting of
4 different components (P-, H-, T- and L-proteins)
which catalyzes the oxidative cleavage of glycine. The
H-protein shuttles the methylamine group of glycine
from the P-protein (glycine dehydrogenase) to the
T-protein (aminomethyltransferase) via a lipoyl group,
attached to a completely conserved lysine residue.
Length = 96
Score = 28.3 bits (64), Expect = 4.2
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 23 WIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI 60
+ + G ++ GD +E+ KA + S G + E+
Sbjct: 35 ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEV 72
>gnl|CDD|29619 cd01572, QPRTase, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called
nicotinate-nucleotide pyrophosphorylase, is involved in
the de novo synthesis of NAD in both prokaryotes and
eukaryotes. It catalyses the reaction of quinolinic
acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP)
in the presence of Mg2+ to produce nicotinic acid
mononucleotide (NAMN), pyrophosphate and carbon
dioxide. QPRTase functions as a homodimer with two
active sites, each formed by the C-terminal region of
one subunit and the N-terminal region of the other..
Length = 268
Score = 28.1 bits (63), Expect = 4.4
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 22 KWIKQEGDKISPGDILCEIE 41
+W+ ++GD++ PG +L +E
Sbjct: 61 EWLVKDGDRVEPGQVLATVE 80
>gnl|CDD|99915 cd05532, POLBc_alpha, DNA polymerase type-B alpha subfamily
catalytic domain. Three DNA-dependent DNA polymerases
type B (alpha, delta, and epsilon) have been identified
as essential for nuclear DNA replication in eukaryotes.
DNA polymerase (Pol) alpha is almost exclusively
required for the initiation of DNA replication and the
priming of Okazaki fragments during elongation. In most
organisms no specific repair role, other than check
point control, has been assigned to this enzyme. Pol
alpha contains both polymerase and exonuclease domains,
but lacks exonuclease activity suggesting that the
exonuclease domain may be for structural purposes only..
Length = 400
Score = 27.5 bits (62), Expect = 7.0
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 21 AKWIKQEGDKISPGD----ILCEIETDKAIME 48
A + + G K+ GD I+C+ + K++ +
Sbjct: 317 ALRMNKRGRKVKAGDTIPYIICKDGSSKSLAD 348
>gnl|CDD|147315 pfam05068, MtlR, Mannitol repressor. The mannitol operon of
Escherichia coli, encoding the mannitol-specific enzyme
II of the phosphotransferase system (MtlA) and mannitol
phosphate dehydrogenase (MtlD) contains an additional
downstream open reading frame which encodes the mannitol
repressor (MtlR).
Length = 169
Score = 27.4 bits (61), Expect = 7.6
Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 148 RIVKSDIETLISTKTNVKDYSTIQSFGLVDESIDANILNLFAKDSYEVI----------- 196
+ + D+ ++ + V+ + I + ++ E+ID + +F KD + V
Sbjct: 2 TLTEDDVLERLNAQDTVRSF-IITAVAILTEAIDQLLPRVFRKDDFAVKYAVEPLLAQSG 60
Query: 197 PHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMN---RTLQFHREEISNKIS 253
P ++ ++ +L I + + +I++ + LRE +N F + I + IS
Sbjct: 61 PLGDL--SVRLKLIYGLGVIDKWVYA---DIEHFIQLREYLNHDDEEYGFADDIILDFIS 115
>gnl|CDD|35426 KOG0205, KOG0205, KOG0205, Plasma membrane H+-transporting ATPase
[Inorganic ion transport and metabolism].
Length = 942
Score = 27.2 bits (60), Expect = 8.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 8 MPSLSPTMTEGKLAKWIKQEGDKISPGDIL 37
M L+P + KW +QE + PGDIL
Sbjct: 129 MAGLAPKAKVLRDGKWSEQEASILVPGDIL 158
>gnl|CDD|30506 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism].
Length = 280
Score = 27.1 bits (60), Expect = 9.2
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 21 AKWIKQEGDKISPGDILCEIE 41
+W+ ++GD++ PGD+L EIE
Sbjct: 66 IQWLVKDGDRVKPGDVLAEIE 86
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.316 0.132 0.368
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,913,551
Number of extensions: 254939
Number of successful extensions: 703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 38
Length of query: 423
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 327
Effective length of database: 4,189,273
Effective search space: 1369892271
Effective search space used: 1369892271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.7 bits)