BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
         (423 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 423

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/423 (100%), Positives = 423/423 (100%)

Query: 1   MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI 60
           MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI
Sbjct: 1   MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI 60

Query: 61  LVPAGTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRP 120
           LVPAGTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRP
Sbjct: 61  LVPAGTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRP 120

Query: 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESI 180
           IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESI
Sbjct: 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESI 180

Query: 181 DANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRT 240
           DANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRT
Sbjct: 181 DANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRT 240

Query: 241 LQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIV 300
           LQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIV
Sbjct: 241 LQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIV 300

Query: 301 TPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINP 360
           TPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINP
Sbjct: 301 TPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINP 360

Query: 361 PQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW 420
           PQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW
Sbjct: 361 PQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW 420

Query: 421 MLM 423
           MLM
Sbjct: 421 MLM 423


>gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 436

 Score =  150 bits (379), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 204/433 (47%), Gaps = 28/433 (6%)

Query: 2   MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61
           M   I +PSL  ++ E  +  W+K+ G+ +  G+IL E+ETDK  +E  S   G + E+ 
Sbjct: 19  MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78

Query: 62  VPAG--TENIAVNSPILNILMDSTE-IPPSPPLSKENIVEVREEHSHSSPVVVREKHSKN 118
           V  G           I+ I  D  E I  + P S  N +    +     P          
Sbjct: 79  VAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMP---------- 128

Query: 119 RPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSF--GLV 176
               SP A +L  E G+  S + G+G  G+I+KSD+   IS   +  D ST+ S   G+ 
Sbjct: 129 ---HSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVF 185

Query: 177 DESIDANILNLFAKDSYEV------IPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNL 230
              I++   N+F K S         +    +R+T+A RL+ ++ T        + N+  +
Sbjct: 186 SRIINS-ASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRI 244

Query: 231 LSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDIS 290
           +S+R   +R      ++   K+       KA +  + ++   N     + ++   +  I 
Sbjct: 245 ISIR---SRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIG 301

Query: 291 VAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLG 350
           VAV    G+V P+IR AD+ +I++I  E+ +L + A+   L   + Q GT +ISN G+ G
Sbjct: 302 VAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYG 361

Query: 351 INSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAK 410
                 ++NPPQS IL +   +++ + ++ +I +  +M   LS DHR VDG  A   L +
Sbjct: 362 SLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVR 421

Query: 411 FKEYIENPVWMLM 423
            KE +E+P   ++
Sbjct: 422 LKELLEDPERFIL 434


>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 467

 Score =  107 bits (266), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 61/77 (79%)

Query: 6  ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65
          +TMPSLSPTMTEG +AKW K EGD I  GDI+ E+ETDKA+ME ES+DEGI+ +IL P G
Sbjct: 5  VTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNG 64

Query: 66 TENIAVNSPILNILMDS 82
          T+N+ VN+PI  IL + 
Sbjct: 65 TKNVKVNTPIAAILQEG 81


>gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 427

 Score = 31.2 bits (69), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 17/125 (13%)

Query: 173 FGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLS 232
           +G  + + D + +N  +   Y   P   I K    RL       P FY     N+ ++L+
Sbjct: 203 YGTANINFDKDPINSISDAIY---PVGRIDKAFVSRL-------PVFYAE---NL-SILT 248

Query: 233 LREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVA 292
               ++RT  F  + I   + V DI+ + F L ++ VP    SWT   +     + I+ +
Sbjct: 249 APAMLSRTYDFDEKMI---VPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTS 305

Query: 293 VSIPG 297
           + + G
Sbjct: 306 LDLAG 310


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 884

 Score = 27.7 bits (60), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 16/88 (18%)

Query: 4   HTITMPSLSPTMTE--GKLAKWIKQEGDKISPGDI----LCEI------ETDKAIMEFES 51
            TIT+  LS  M+E    + K++ +EG  + PGD+    L EI       T K ++E + 
Sbjct: 306 ETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIANEFGNTVKRVLESD- 364

Query: 52  VDEGIIDEILVPAGTENIAVNSPILNIL 79
           ++ GI D   V     ++ +  P++ I+
Sbjct: 365 IEVGIFD---VADSESDLDIRPPVVTIM 389


>gi|254780497|ref|YP_003064910.1| 3-oxoacyl-(acyl carrier protein) synthase III [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 324

 Score = 25.0 bits (53), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 12/61 (19%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 348 MLGINSFCAVIN-PPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASK 406
           ++G ++F  +++   +ST +  G G   ++ +  E+K +++ +  + + +   DG+   K
Sbjct: 137 VIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTGILSTYLCSDGSYIDK 196

Query: 407 L 407
           L
Sbjct: 197 L 197


>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 23.5 bits (49), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 135 IDLSSLSGSGPHGRIVKSDIETLISTKT 162
           IDLS + G  P  R    DI+T +++ T
Sbjct: 131 IDLSKVEGLDPQTRKYLQDIQTQLTSDT 158


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.132    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 261,028
Number of Sequences: 1233
Number of extensions: 10685
Number of successful extensions: 49
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 16
length of query: 423
length of database: 328,796
effective HSP length: 76
effective length of query: 347
effective length of database: 235,088
effective search space: 81575536
effective search space used: 81575536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)