BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus str. psy62] (423 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/423 (100%), Positives = 423/423 (100%) Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI 60 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI Sbjct: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI 60 Query: 61 LVPAGTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRP 120 LVPAGTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRP Sbjct: 61 LVPAGTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRP 120 Query: 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESI 180 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESI Sbjct: 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESI 180 Query: 181 DANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRT 240 DANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRT Sbjct: 181 DANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRT 240 Query: 241 LQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIV 300 LQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIV Sbjct: 241 LQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIV 300 Query: 301 TPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINP 360 TPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINP Sbjct: 301 TPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINP 360 Query: 361 PQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW 420 PQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW Sbjct: 361 PQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW 420 Query: 421 MLM 423 MLM Sbjct: 421 MLM 423 >gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 436 Score = 150 bits (379), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 120/433 (27%), Positives = 204/433 (47%), Gaps = 28/433 (6%) Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 M I +PSL ++ E + W+K+ G+ + G+IL E+ETDK +E S G + E+ Sbjct: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 Query: 62 VPAG--TENIAVNSPILNILMDSTE-IPPSPPLSKENIVEVREEHSHSSPVVVREKHSKN 118 V G I+ I D E I + P S N + + P Sbjct: 79 VAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMP---------- 128 Query: 119 RPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSF--GLV 176 SP A +L E G+ S + G+G G+I+KSD+ IS + D ST+ S G+ Sbjct: 129 ---HSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVF 185 Query: 177 DESIDANILNLFAKDSYEV------IPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNL 230 I++ N+F K S + +R+T+A RL+ ++ T + N+ + Sbjct: 186 SRIINS-ASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRI 244 Query: 231 LSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDIS 290 +S+R +R ++ K+ KA + + ++ N + ++ + I Sbjct: 245 ISIR---SRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIG 301 Query: 291 VAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLG 350 VAV G+V P+IR AD+ +I++I E+ +L + A+ L + Q GT +ISN G+ G Sbjct: 302 VAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYG 361 Query: 351 INSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAK 410 ++NPPQS IL + +++ + ++ +I + +M LS DHR VDG A L + Sbjct: 362 SLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVR 421 Query: 411 FKEYIENPVWMLM 423 KE +E+P ++ Sbjct: 422 LKELLEDPERFIL 434 >gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 467 Score = 107 bits (266), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 49/77 (63%), Positives = 61/77 (79%) Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65 +TMPSLSPTMTEG +AKW K EGD I GDI+ E+ETDKA+ME ES+DEGI+ +IL P G Sbjct: 5 VTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNG 64 Query: 66 TENIAVNSPILNILMDS 82 T+N+ VN+PI IL + Sbjct: 65 TKNVKVNTPIAAILQEG 81 >gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] Length = 427 Score = 31.2 bits (69), Expect = 0.033, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 17/125 (13%) Query: 173 FGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLS 232 +G + + D + +N + Y P I K RL P FY N+ ++L+ Sbjct: 203 YGTANINFDKDPINSISDAIY---PVGRIDKAFVSRL-------PVFYAE---NL-SILT 248 Query: 233 LREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVA 292 ++RT F + I + V DI+ + F L ++ VP SWT + + I+ + Sbjct: 249 APAMLSRTYDFDEKMI---VPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTS 305 Query: 293 VSIPG 297 + + G Sbjct: 306 LDLAG 310 >gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62] Length = 884 Score = 27.7 bits (60), Expect = 0.40, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 16/88 (18%) Query: 4 HTITMPSLSPTMTE--GKLAKWIKQEGDKISPGDI----LCEI------ETDKAIMEFES 51 TIT+ LS M+E + K++ +EG + PGD+ L EI T K ++E + Sbjct: 306 ETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIANEFGNTVKRVLESD- 364 Query: 52 VDEGIIDEILVPAGTENIAVNSPILNIL 79 ++ GI D V ++ + P++ I+ Sbjct: 365 IEVGIFD---VADSESDLDIRPPVVTIM 389 >gi|254780497|ref|YP_003064910.1| 3-oxoacyl-(acyl carrier protein) synthase III [Candidatus Liberibacter asiaticus str. psy62] Length = 324 Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust. Identities = 12/61 (19%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 348 MLGINSFCAVIN-PPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASK 406 ++G ++F +++ +ST + G G ++ + E+K +++ + + + + DG+ K Sbjct: 137 VIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTGILSTYLCSDGSYIDK 196 Query: 407 L 407 L Sbjct: 197 L 197 >gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 23.5 bits (49), Expect = 6.7, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 135 IDLSSLSGSGPHGRIVKSDIETLISTKT 162 IDLS + G P R DI+T +++ T Sbjct: 131 IDLSKVEGLDPQTRKYLQDIQTQLTSDT 158 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.132 0.368 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 261,028 Number of Sequences: 1233 Number of extensions: 10685 Number of successful extensions: 49 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 16 length of query: 423 length of database: 328,796 effective HSP length: 76 effective length of query: 347 effective length of database: 235,088 effective search space: 81575536 effective search space used: 81575536 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 40 (20.0 bits)