HHsearch alignment for GI: 254780675 and conserved domain: COG0446
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].
Probab=99.96 E-value=2.9e-28 Score=224.12 Aligned_cols=297 Identities=29% Similarity=0.347 Sum_probs=215.1
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC---CCEEC---CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCC
Q ss_conf 89972455257543111011134555422124---52111---3334443215654332100023210133310000000
Q gi|254780675|r 148 TYKAKHIIIATGARPRHIEGIEPDSHLIWTYF---DALKP---SKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKD 221 (481)
Q Consensus 148 ~~~a~~ivIATGs~p~~~~g~~~~~~~~~t~~---~~l~l---~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~ 221 (481)
T Consensus 92 ~~~yd~LvlatGa~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~ 169 (415)
T COG0446 92 EIEYDYLVLATGARPRPPP--ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD 169 (415)
T ss_pred CCCCCCEEECCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 0726525881476556677--54222443246899998765356677739998934999999999987799389997566
Q ss_pred CCCCCCC-CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEE-EEECCCCEEEEECCCEEECCCCEEEEECCCCCCC
Q ss_conf 0122222-2212221001220123322100134420223431012-4403674021102322430574220000232221
Q gi|254780675|r 222 RILPVED-SEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQ-VERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKI 299 (481)
Q Consensus 222 ~ll~~~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~-~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~ 299 (481)
T Consensus 170 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~g~~p~~~l~--~~~ 245 (415)
T COG0446 170 RLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGI--DGEEIKADLVIIGPGERPNVVLA--NDA 245 (415)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCEEEEEEEEE--EEEEECCCEEEECCCCCCCCCCC--CCC
T ss_conf 42331121889999999999729489826526999925862155445665--30352233698789757761015--465
Q ss_pred --CCCCCCEEEEECCCCEEE-CCCCEEECCCCCCC----------CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEE-
Q ss_conf --123573266424874230-25858830444553----------2444123202555543024664432122320024-
Q gi|254780675|r 300 --GVKTSNGCIIVDGYGRTN-VPGIYAIGDVAGAP----------MLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGC- 365 (481)
Q Consensus 300 --gi~~~~g~i~vd~~~qTs-~p~IyA~GDv~g~~----------~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~- 365 (481)
T Consensus 246 ~~~~~~~~g~i~v~~~~~~~~~~~vya~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~~~---~~~~~~ 321 (415)
T COG0446 246 LPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-LRIPG---LLGTVI 321 (415)
T ss_pred CCCCCCCCCCEEEECCCCEECCCCEEEECCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCC---CCCCEE
T ss_conf 44401378729998245421668889803320024432220123101244554300245540344-33332---345114
Q ss_pred -EEEEHHHEEECCCHHHHHCCCCCEEEEEEECCCCHHHHCCC-CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf -54303340001496876107972799999646382332078-9821899999889985999999829988999999999
Q gi|254780675|r 366 -TYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLG-EDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIA 443 (481)
Q Consensus 366 -vft~P~ia~vG~te~ea~~~g~~~~~~~~~~~~~~~~~~~~-~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~a 443 (481)
T Consensus 322 ~~~~~~~~~~~g~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~ 396 (415)
T COG0446 322 SDVGDLCAASTGLTEG--KERGID-VVLVVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LE-VLKRIGALALA 396 (415)
T ss_pred EECCCEEEEEEEECCC--CEEEEE-EEEEECCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCHH-HH-HHHHHHHHHHH
T ss_conf 4047614677750355--223345-5566414565311126776433303541155210022101-36-88886445554
Q ss_pred HHCCCCHHHHHCCCCC
Q ss_conf 9877977899638854
Q gi|254780675|r 444 MSLETTEEELMHTVFP 459 (481)
Q Consensus 444 i~~~~t~~~l~~~~~~ 459 (481)
T Consensus 397 ~~~~~~~~~~~~~~~~ 412 (415)
T COG0446 397 IGLGDTVAELDALDAI 412 (415)
T ss_pred HHHCCCCHHHHHCCCC
T ss_conf 1010120021201002