HHsearch alignment for GI: 254780675 and conserved domain: COG0493
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only].
Probab=99.87 E-value=2.9e-22 Score=180.55 Aligned_cols=280 Identities=28% Similarity=0.381 Sum_probs=181.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-
Q ss_conf 34899989857999999999879939999788-8862463256737088999999999998421178213487544999-
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE- 82 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~- 82 (481)
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl-l~yG-IP----------------------------~~kl~k 173 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL-LLYG-IP----------------------------DFKLPK 173 (457)
T ss_pred CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEE-EEEC-CC----------------------------HHHCCC
T ss_conf 67999888951555889998689879982666777447-9814-84----------------------------464642
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-C
Q ss_conf 999999999998534468763014142100000112222100236875200135555432258638997245525754-3
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA-R 161 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs-~ 161 (481)
T Consensus 174 ~i~d~~i-----------~~l~~~Gv~~~~~~~vG~---~it~~-------------------~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 174 DILDRRL-----------ELLERSGVEFKLNVRVGR---DITLE-------------------ELLKEYDAVFLATGAGK 220 (457)
T ss_pred HHHHHHH-----------HHHHHCCCEEEECCEECC---CCCHH-------------------HHHHHHCEEEEECCCCC
T ss_conf 0689999-----------999874909998667799---67899-------------------98653287999326678
Q ss_pred CCC--CCCCCCCCCCCCCCCCCE--------E-C--CCCC----CCCCCCCCCCCCCCCHHHHHCCCC-CCCCEECCCCC
Q ss_conf 111--011134555422124521--------1-1--3334----443215654332100023210133-31000000001
Q gi|254780675|r 162 PRH--IEGIEPDSHLIWTYFDAL--------K-P--SKTP----KSLIVMGSGAIGVEFSSFYKSLDV-DVSLIEVKDRI 223 (481)
Q Consensus 162 p~~--~~g~~~~~~~~~t~~~~l--------~-l--~~~p----~~ivIiGgG~ig~E~A~~l~~lG~-~Vtli~~~~~l 223 (481)
T Consensus 221 ~~~l~i~g~d--~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~ 298 (457)
T COG0493 221 PRPLDIPGED--AKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRD 298 (457)
T ss_pred CCCCCCCCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 8768988867--77761687999999998603565446777789858998998888999888874175399992355665
Q ss_pred --CCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCC-CC-E---EEEEC--------------CCCEEEEECCCEE
Q ss_conf --22222221222100122012332210013442022343-10-1---24403--------------6740211023224
Q gi|254780675|r 224 --LPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDM-VS-V---QVERK--------------DGSVSSMQAEKLL 282 (481)
Q Consensus 224 --l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~-~~-v---~~~~~--------------dG~~~~i~~D~vl 282 (481)
T Consensus 299 ~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~ 378 (457)
T COG0493 299 DETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVI 378 (457)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHH
T ss_conf 66785444106788776775477543156763586658980840112212446665553445773226855875456688
Q ss_pred ECCCCEEEEECCCCCCCCCCCC-CEEEEECCCC-EEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 3057422000023222112357-3266424874-23025858830444553244412320255554302
Q gi|254780675|r 283 LSAGVQGNIENIGLEKIGVKTS-NGCIIVDGYG-RTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIA 349 (481)
Q Consensus 283 ~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~~~-qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~ 349 (481)
T Consensus 379 ~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 379 LAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEECCEEECCHHHHHHHHHCCHHHHHHHH
T ss_conf 666136675432110012353767855103222124687636575442361341407640329998756