HHsearch alignment for GI: 254780675 and conserved domain: COG1252
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=100.00 E-value=2.2e-34 Score=268.50 Aligned_cols=292 Identities=25% Similarity=0.417 Sum_probs=208.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 4899989857999999999879--93999978888624632567370889999999999984211782134875449999
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLG--FKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIED 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G--~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (481)
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~---------hl~~plL~ev---------------a~g~--l~~~~ 58 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY---------HLFTPLLYEV---------------ATGT--LSESE 58 (405)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC---------CCCCHHHHHH---------------HCCC--CCHHH
T ss_conf 69998986799999997641678871899918876---------6663033556---------------3287--77565
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999999998534468763014-14210000011222210023687520013555543225863899724552575431
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKN-KVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARP 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p 162 (481)
T Consensus 59 i-----------~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~----------------~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 59 I-----------AIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLAD----------------LGEISYDYLVVALGSET 111 (405)
T ss_pred E-----------ECCHHHHHCCCCCEEEEEEEEEEECCCCCEEEECC----------------CCCCCCCEEEEECCCCC
T ss_conf 2-----------13089984235744899978999715679899578----------------87023638999458766
Q ss_pred C--CCCCCCCCCCCCCCCCCCEEC-----------CCCCC-----CCCCCCCCCCCCCCHHHHHCC-------------C
Q ss_conf 1--101113455542212452111-----------33344-----432156543321000232101-------------3
Q gi|254780675|r 163 R--HIEGIEPDSHLIWTYFDALKP-----------SKTPK-----SLIVMGSGAIGVEFSSFYKSL-------------D 211 (481)
Q Consensus 163 ~--~~~g~~~~~~~~~t~~~~l~l-----------~~~p~-----~ivIiGgG~ig~E~A~~l~~l-------------G 211 (481)
T Consensus 112 ~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~ 191 (405)
T COG1252 112 NYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSE 191 (405)
T ss_pred CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 76899787870777788999999999999999986335643441189998988238999999999999876533478653
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEE
Q ss_conf 33100000000122222221222100122012332210013442022343101244036740211023224305742200
Q gi|254780675|r 212 VDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNI 291 (481)
Q Consensus 212 ~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~ 291 (481)
T Consensus 192 ~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~--~g~~-~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 192 LRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLK--DGEE-EIPADTVVWAAGVRASP 264 (405)
T ss_pred CEEEEECCCCHHCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCCC----EEEC--CCCE-EEECCEEEECCCCCCCH
T ss_conf 189998257121358888999999999998797898698148976991----7975--5883-77627799857775786
Q ss_pred ECCCCCC-CCCCCCC-EEEEECCCCEE-ECCCCEEECCCCC------CCCCCCCCCCCHHHHHHHHCCCC---CCCCCCC
Q ss_conf 0023222-1123573-26642487423-0258588304445------53244412320255554302466---4432122
Q gi|254780675|r 292 ENIGLEK-IGVKTSN-GCIIVDGYGRT-NVPGIYAIGDVAG------APMLAHKAEHEGIICIEKIAGKS---KVYPLDK 359 (481)
Q Consensus 292 ~~L~Le~-~gi~~~~-g~i~vd~~~qT-s~p~IyA~GDv~g------~~~l~~~A~~qg~~aa~~i~~~~---~~~~~d~ 359 (481)
T Consensus 265 ~---~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y 341 (405)
T COG1252 265 L---LKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKY 341 (405)
T ss_pred H---HHHCCHHHHCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 6---6632702213489777578751699898699711103768887998118899999999999999964999988852
Q ss_pred C
Q ss_conf 3
Q gi|254780675|r 360 S 360 (481)
Q Consensus 360 ~ 360 (481)
T Consensus 342 ~ 342 (405)
T COG1252 342 K 342 (405)
T ss_pred C
T ss_conf 0