HHsearch alignment for GI: 254780675 and conserved domain: COG1252

Probab=97.74  E-value=8.3e-06  Score=60.97  Aligned_cols=100  Identities=21%  Similarity=0.440  Sum_probs=69.6

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCC--CCCCCCEECCCCCC--CC---------CCCCCCCCCCHHHHHCC-CCCCCCHHHH
Q ss_conf             44432156543321000232101--33310000000012--22---------22221222100122012-3322100134
Q gi|254780675|r  188 PKSLIVMGSGAIGVEFSSFYKSL--DVDVSLIEVKDRIL--PV---------EDSEISQFVQRSLQKRG-IKILTESKIS  253 (481)
Q Consensus       188 p~~ivIiGgG~ig~E~A~~l~~l--G~~Vtli~~~~~ll--~~---------~d~~~~~~~~~~l~~~G-v~i~~~~~v~  253 (481)
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCHHHEECCHHHHHCCCCCEEEEEE-EEE
T ss_conf             7569998986799999997641678871899918876666303355632877756521308998423574489997-899


Q ss_pred             HHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECC
Q ss_conf             42022343101244036740211023224305742200002
Q gi|254780675|r  254 SVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENI  294 (481)
Q Consensus       254 ~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L  294 (481)
T Consensus        82 ~ID~~~k--~V~~~~----~~~i~YD~LVvalGs~~~~fgi  116 (405)
T COG1252          82 DIDRDAK--KVTLAD----LGEISYDYLVVALGSETNYFGI  116 (405)
T ss_pred             EECCCCC--EEEECC----CCCCCCCEEEEECCCCCCCCCC
T ss_conf             9715679--899578----8702363899945876676899