HHsearch alignment for GI: 254780675 and conserved domain: COG3634
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.94 E-value=9.9e-27 Score=212.94 Aligned_cols=290 Identities=28% Similarity=0.378 Sum_probs=190.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 43489998985799999999987993999978888624632567370889999999999984211782134875449999
Q gi|254780675|r 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIED 83 (481)
Q Consensus 4 ~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (481)
T Consensus 211 ~yDVLvVGgGPAgaaAAIYaARKGiRTGl~-aerfGGQvldT-----------~----~IE---Nf----Isv~~teGpk 267 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLV-AERFGGQVLDT-----------M----GIE---NF----ISVPETEGPK 267 (520)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCHHHHH-HHHHCCEECCC-----------C----CHH---HE----ECCCCCCCHH
T ss_conf 834999868863167899998612111001-56518820000-----------0----333---30----0565454668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 999999999985344687630141421000-0011222210023687520013555543225863899724552575431
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWG-KATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARP 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G-~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p 162 (481)
T Consensus 268 l~~ale~Hv~-----------~Y~vDimn~qra~~l~~a-----~------~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 268 LAAALEAHVK-----------QYDVDVMNLQRASKLEPA-----A------VEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred HHHHHHHHHH-----------HCCCHHHHHHHHHCCEEC-----C------CCCCCEEEEECCCCEECCCEEEEECCCCH
T ss_conf 9999999876-----------468245533434202015-----7------88860799954783511316998427642
Q ss_pred CCCCCCCCCCCC---C---CCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 110111345554---2---2124521113334443215654332100023210133310000000012222222122210
Q gi|254780675|r 163 RHIEGIEPDSHL---I---WTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQ 236 (481)
Q Consensus 163 ~~~~g~~~~~~~---~---~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~ 236 (481)
T Consensus 326 Rn~nvPGE~e~rnKGVayCPHCDGPLF---~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk--A----D~VLq 396 (520)
T COG3634 326 RNMNVPGEDEYRNKGVAYCPHCDGPLF---KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK--A----DAVLQ 396 (520)
T ss_pred HCCCCCCHHHHHHCCEEECCCCCCCCC---CCCEEEEECCCCCHHHHHHHHHHHHHEEEEEECCHHHH--H----HHHHH
T ss_conf 008998568873178266888998651---79647998888612888876775555131121060321--5----78999
Q ss_pred HHHHHC-CCCCCCCHHHHHHCCCCCCCC-EEEE-ECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-CEEEEECC
Q ss_conf 012201-233221001344202234310-1244-0367402110232243057422000023222112357-32664248
Q gi|254780675|r 237 RSLQKR-GIKILTESKISSVKQKGDMVS-VQVE-RKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-NGCIIVDG 312 (481)
Q Consensus 237 ~~l~~~-Gv~i~~~~~v~~v~~~~~~~~-v~~~-~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~g~i~vd~ 312 (481)
T Consensus 397 ~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~W--Lkg~-Vel~~rGEIivD~ 473 (520)
T COG3634 397 DKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVDA 473 (520)
T ss_pred HHHHCCCCCEEEECCEEEEEECCCCEECCEEEEECCCCCEEEEEEEEEEEEEECCCCHHH--HHCH-HHCCCCCCEEEEC
T ss_conf 997327984898223146876477501132778536785467874015899703468167--6151-1117676478855
Q ss_pred CCEEECCCCEEECCCCCCC-CCCCCCCCCHHHHHHHHCC
Q ss_conf 7423025858830444553-2444123202555543024
Q gi|254780675|r 313 YGRTNVPGIYAIGDVAGAP-MLAHKAEHEGIICIEKIAG 350 (481)
Q Consensus 313 ~~qTs~p~IyA~GDv~g~~-~l~~~A~~qg~~aa~~i~~ 350 (481)
T Consensus 474 ~g~T~vpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFD 512 (520)
T COG3634 474 RGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFD 512 (520)
T ss_pred CCCCCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 787678723533753577410489982675133333314