HHsearch alignment for GI: 254780675 and conserved domain: PRK12771
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional.
Probab=97.96 E-value=1.1e-06 Score=67.47 Aligned_cols=88 Identities=14% Similarity=0.276 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCC---------CCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCC
Q ss_conf 444321565433210002321013331000000001222---------22221222100122012332210013442022
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPV---------EDSEISQFVQRSLQKRGIKILTESKISSVKQK 258 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~---------~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~ 258 (481)
T Consensus 137 gkkVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGml~~GIP~yRLP~~vl~~ei~~i~~~GV~~~~n~~vg~---d 213 (560)
T PRK12771 137 GKRVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGMMRYGIPGYRLPRDVLDAEIQRILDLGVEVKLGVRVGE---D 213 (560)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECC---C
T ss_conf 9989998977899999999997698589967678889888356875447589999999999964967983878446---5
Q ss_pred CCCCCEEEEECCCCEEEEECCCEEECCCCE
Q ss_conf 343101244036740211023224305742
Q gi|254780675|r 259 GDMVSVQVERKDGSVSSMQAEKLLLSAGVQ 288 (481)
Q Consensus 259 ~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~ 288 (481)
T Consensus 214 -----it~~~L-----~~~yDAV~la~Ga~ 233 (560)
T PRK12771 214 -----ITLEQL-----EGDYDAVFVAIGAQ 233 (560)
T ss_pred -----CCHHHH-----HCCCCEEEECCCCC
T ss_conf -----679997-----17788899916878