HHsearch alignment for GI: 254780675 and conserved domain: PRK12809
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed.
Probab=100.00 E-value=1.3e-32 Score=255.64 Aligned_cols=277 Identities=21% Similarity=0.299 Sum_probs=188.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-H
Q ss_conf 489998985799999999987993999978-88862463256737088999999999998421178213487544999-9
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-D 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-~ 83 (481)
T Consensus 312 KVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGl-L------------------------~yGI-----P~fRLPK~ 361 (639)
T PRK12809 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM-L------------------------TFGI-----PPFKLDKT 361 (639)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE-E------------------------EECC-----CCCCCCHH
T ss_conf 8999897589999999999759906999368888986-8------------------------5358-----74527778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-CC
Q ss_conf 99999999998534468763014142100000112222100236875200135555432258638997245525754-31
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA-RP 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs-~p 162 (481)
T Consensus 362 vv~rei-----------~~l~~lGV~f~~n~~V--G-kDit~~----------------eL---~~~yDAVflg~Ga~~~ 408 (639)
T PRK12809 362 VLSQRR-----------EIFTAMGIDFHLNCEI--G-RDITFS----------------DL---TSEYDAVFIGVGTYGM 408 (639)
T ss_pred HHHHHH-----------HHHHHCCCEEEECCEE--C-CCCCHH----------------HH---HHHCCEEEEEECCCCC
T ss_conf 999999-----------9998649889919677--9-868899----------------99---7317989997367888
Q ss_pred CCCCCCCCCCCCCCCCCCCEE-----------CCCC------CCCCCCCCCCCCCCCCHHHHHCCC-CCCCCEECCCCC-
Q ss_conf 110111345554221245211-----------1333------444321565433210002321013-331000000001-
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALK-----------PSKT------PKSLIVMGSGAIGVEFSSFYKSLD-VDVSLIEVKDRI- 223 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~-----------l~~~------p~~ivIiGgG~ig~E~A~~l~~lG-~~Vtli~~~~~l- 223 (481)
T Consensus 409 ~~l~IpGedl~GV~~AlefL~~~~~~~~g~~~~~~~p~~~~~GK~VVVIGGGntAmDcaRTA~RlGA~~VtivYRR~~~e 488 (639)
T PRK12809 409 MRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS 488 (639)
T ss_pred CCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 54898877787838769999999986438864445775455677799989982189999999983998775215477457
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCC--E---EEEE----C---------CCCEEEEECCCEEECC
Q ss_conf 2222222122210012201233221001344202234310--1---2440----3---------6740211023224305
Q gi|254780675|r 224 LPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVS--V---QVER----K---------DGSVSSMQAEKLLLSA 285 (481)
Q Consensus 224 l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~--v---~~~~----~---------dG~~~~i~~D~vl~a~ 285 (481)
T Consensus 489 MPA~~~E----v~~-A~EEGV~f~~~~~P~~i~~de~G~V~gv~~vr~~lgepd~~GRr~p~~i~Gse~~i~aD~VI~Ai 563 (639)
T PRK12809 489 MPGSRKE----VVN-AREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAF 563 (639)
T ss_pred CCCCCEE----CCC-HHHCCEEEECCCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEECCEEEECC
T ss_conf 9997003----010-12187389827885799967986399999999995675888887347608936999899999988
Q ss_pred CCEEEEECCCCCCCCCCCCC-EEEEECCC----CEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 74220000232221123573-26642487----42302585883044455324441232025555430246
Q gi|254780675|r 286 GVQGNIENIGLEKIGVKTSN-GCIIVDGY----GRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGK 351 (481)
Q Consensus 286 Gr~Pn~~~L~Le~~gi~~~~-g~i~vd~~----~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~~~ 351 (481)
T Consensus 564 G~~~~~~~-~~~~~giel~~~G~I~~~~~~~~~~qTs~~gVFAgGD~v~G~stVV~AI~~Gr~AA~sI~~y 633 (639)
T PRK12809 564 GFQAHAMP-WLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTL 633 (639)
T ss_pred CCCCCCCC-CCCCCCEEECCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 78998875-33467855889998861787776766899999982787867369999999999999999999