HHsearch alignment for GI: 254780675 and conserved domain: TIGR00031
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=92.30 E-value=0.045 Score=33.86 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=30.6
Q ss_pred HHCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHH-----HCCCCCCCCHHHHHHCCC-CCCCCEEEEECCCCEEEEECCC
Q ss_conf 2101333100000000122222221222100122-----012332210013442022-3431012440367402110232
Q gi|254780675|r 207 YKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ-----KRGIKILTESKISSVKQK-GDMVSVQVERKDGSVSSMQAEK 280 (481)
Q Consensus 207 l~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~-----~~Gv~i~~~~~v~~v~~~-~~~~~v~~~~~dG~~~~i~~D~ 280 (481)
T Consensus 124 ~~k~~~~vpl~~L~~----~~~p~i~~-l~~~l~~~v~~~Yt~K-~WGl~~~~~~~~v~~Rvpv~Ls~d----~~YF~dr 193 (390)
T TIGR00031 124 FKKFGAHVPLLELQE----IADPDIQL-LYQFLYRKVYKPYTVK-QWGLPLEEIDPEVIGRVPVVLSED----SSYFPDR 193 (390)
T ss_pred HHHHCCCCCHHHHHH----CCCCCHHH-HHHHHHHHHHCCCCCC-CCCCCHHHCCHHHHCCEEEEEECC----CCCCCCC
T ss_conf 232046155688841----16853788-9999999862477733-367885776801616353895036----8866652
Q ss_pred EEECCCCEEEEE
Q ss_conf 243057422000
Q gi|254780675|r 281 LLLSAGVQGNIE 292 (481)
Q Consensus 281 vl~a~Gr~Pn~~ 292 (481)
T Consensus 194 ~yQg~P~~GYT~ 205 (390)
T TIGR00031 194 IYQGLPKGGYTK 205 (390)
T ss_pred EEECCCCCCHHH
T ss_conf 462236753579