HHsearch alignment for GI: 254780675 and conserved domain: TIGR01317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.94 E-value=2e-26 Score=210.67 Aligned_cols=291 Identities=22% Similarity=0.316 Sum_probs=173.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 3489998985799999999987993999978-888624632567370889999999999984211782134875449999
Q gi|254780675|r 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIED 83 (481)
Q Consensus 5 yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (481)
T Consensus 152 kkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGL-------------------------L~YGIP---nmKLdK~e 203 (517)
T TIGR01317 152 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGL-------------------------LRYGIP---NMKLDKEE 203 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-------------------------CCCCCC---CCCCCHHH
T ss_conf 66899756757999999985358838997436788863-------------------------024888---74337388
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEEEEEEECCCC-
Q ss_conf 9999999999853446876301414210000011-222210023687520013555543225863-8997245525754-
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATL-KNPSEITVSKPSQPAVQPQHPIPKKVLGEG-TYKAKHIIIATGA- 160 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f-~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~~a~~ivIATGs- 160 (481)
T Consensus 204 ~v~RR------i-----~~l~aEG~~FvtnteiGdWdens-kitnlsk----------~di~~~~L~~~fDAVVLa~Ga~ 261 (517)
T TIGR01317 204 IVDRR------I-----DLLEAEGVDFVTNTEIGDWDENS-KITNLSK----------KDISADELKEDFDAVVLATGAT 261 (517)
T ss_pred HHHHH------H-----HHHHHCCCCCCCCCCCCCCCCCC-CEECCCC----------CCCCHHHHHHHCCEEEEECCCC
T ss_conf 99999------9-----99874784201783004653444-2000223----------4268799871469389833788
Q ss_pred CCCCCCCCCCCCCCCC-------------CCCCCEECCCC------CCCCCCCCCCCCCCCCHHHHHCCCC-CCCCEECC
Q ss_conf 3111011134555422-------------12452111333------4443215654332100023210133-31000000
Q gi|254780675|r 161 RPRHIEGIEPDSHLIW-------------TYFDALKPSKT------PKSLIVMGSGAIGVEFSSFYKSLDV-DVSLIEVK 220 (481)
Q Consensus 161 ~p~~~~g~~~~~~~~~-------------t~~~~l~l~~~------p~~ivIiGgG~ig~E~A~~l~~lG~-~Vtli~~~ 220 (481)
T Consensus 262 ~pRDLpI~GREL~GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~akGK~VvvIGGGDTG~DCvGTs~RhGA~sV~qFE~m 341 (517)
T TIGR01317 262 KPRDLPIPGRELKGIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIM 341 (517)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 60103557766466037865546754856088536667887354228678997578756224563235543552302568
Q ss_pred CCCC---------CCCCCCCC-CCCCHHHHH-CC--CCCCCCHHHHHHCCCC------------------CCCCEEEEEC
Q ss_conf 0012---------22222212-221001220-12--3322100134420223------------------4310124403
Q gi|254780675|r 221 DRIL---------PVEDSEIS-QFVQRSLQK-RG--IKILTESKISSVKQKG------------------DMVSVQVERK 269 (481)
Q Consensus 221 ~~ll---------~~~d~~~~-~~~~~~l~~-~G--v~i~~~~~v~~v~~~~------------------~~~~v~~~~~ 269 (481)
T Consensus 342 P~PP~~Ra~~npWP~wP~v~r~~y~hEE~~a~~GrDpRey-~i~t~~f~G~d~G~V~a~rTv~V~~~K~~~Gk~-~~~e~ 419 (517)
T TIGR01317 342 PKPPEERAKDNPWPEWPKVYRVDYAHEEVKAKYGRDPREY-SIATKEFVGDDEGKVKAVRTVRVEMKKDEDGKY-EFVEV 419 (517)
T ss_pred CCCCHHHCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHHH-HCCCEEEEECCCCEEEEEEEEEEEEEECCCCCE-EEEEE
T ss_conf 8877677278648657511330266898985179560123-100133567688448788889999987789828-88860
Q ss_pred CCCEEEEECCCEEECCCCEEEEECC-CCCCCCCCC-CCEEEE-ECCCCE---EECCC--CEEECCCCCCCCCCCCCCCCH
Q ss_conf 6740211023224305742200002-322211235-732664-248742---30258--588304445532444123202
Q gi|254780675|r 270 DGSVSSMQAEKLLLSAGVQGNIENI-GLEKIGVKT-SNGCII-VDGYGR---TNVPG--IYAIGDVAGAPMLAHKAEHEG 341 (481)
Q Consensus 270 dG~~~~i~~D~vl~a~Gr~Pn~~~L-~Le~~gi~~-~~g~i~-vd~~~q---Ts~p~--IyA~GDv~g~~~l~~~A~~qg 341 (481)
T Consensus 420 pGsE~~~~AdLVLLAmGFvG-PE~~GlL~~~gV~k~~RG~i~A~~~~~~GylTSipGGkVFAAGD~RRGQSLiVWAI~EG 498 (517)
T TIGR01317 420 PGSEEVFEADLVLLAMGFVG-PEQAGLLDDFGVDKDERGNIKAGYDDYEGYLTSIPGGKVFAAGDCRRGQSLIVWAINEG 498 (517)
T ss_pred CCCCCCCHHHEEEEECCCCC-CCCCCCHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 79752011012332026757-64200314444443778746632367776588718972687624898803778888887
Q ss_pred HHHHHHH
Q ss_conf 5555430
Q gi|254780675|r 342 IICIEKI 348 (481)
Q Consensus 342 ~~aa~~i 348 (481)
T Consensus 499 R~aA~aV 505 (517)
T TIGR01317 499 RKAARAV 505 (517)
T ss_pred HHHHHHH
T ss_conf 8999986