HHsearch alignment for GI: 254780675 and conserved domain: TIGR01372
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.81 E-value=4e-19 Score=157.73 Aligned_cols=303 Identities=17% Similarity=0.221 Sum_probs=186.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 98643489998985799999999987993999978-88862463256737088999999999998421178213487544
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEF 79 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (481)
T Consensus 173 ~n~HCDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGs-----------L~~~------------------~g~~I 223 (1026)
T TIGR01372 173 VNAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGS-----------LLSE------------------AGETI 223 (1026)
T ss_pred EEEECCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----------CCCC------------------CCCCC
T ss_conf 423204788788967999999996479889997067657775-----------5677------------------87601
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC--CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 99999999999999853446876301414210000011--2222100236--8752001355554322586389972455
Q gi|254780675|r 80 NIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATL--KNPSEITVSK--PSQPAVQPQHPIPKKVLGEGTYKAKHII 155 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f--~~~~~v~v~~--~~~~~~~~~~~~~~~~~~~~~~~a~~iv 155 (481)
T Consensus 224 DG~PA~~W~~~t~aeL~a-------~~~v~~L~RTT~~G~YD~N~~g~~ER~~DHL~~P~~g~~Re---RlWrvRAkrvV 293 (1026)
T TIGR01372 224 DGKPAADWAAATVAELEA-------LPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPAKGVPRE---RLWRVRAKRVV 293 (1026)
T ss_pred CCCCHHHHHHHHHHHHHC-------CCCEEECCCCCEEEEECCCEEEEEEEHHCCCCCCCCCCCCC---EEEEECCCEEE
T ss_conf 780189999999999741-------89816743540554514774787620113667788748533---05777253456
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCE--ECC----CCCCCCCCCCCCCCCCCCHHHHHCCCCC-CCCEECCCCCCCCCC
Q ss_conf 257543111011134555422124521--113----3344432156543321000232101333-100000000122222
Q gi|254780675|r 156 IATGARPRHIEGIEPDSHLIWTYFDAL--KPS----KTPKSLIVMGSGAIGVEFSSFYKSLDVD-VSLIEVKDRILPVED 228 (481)
Q Consensus 156 IATGs~p~~~~g~~~~~~~~~t~~~~l--~l~----~~p~~ivIiGgG~ig~E~A~~l~~lG~~-Vtli~~~~~ll~~~d 228 (481)
T Consensus 294 LA~GA~ERPlVF~nND~PGvMl-A~A~~~YlnRygV~pG~r~v~~TnNDSAy~~A~dL~~AG~~vvAi~D~R~~~~p--- 369 (1026)
T TIGR01372 294 LATGALERPLVFANNDRPGVML-AGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLAEAGLAVVAIVDARADVSP--- 369 (1026)
T ss_pred ECCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCH---
T ss_conf 6057644778688319532333-679999888750054870589821735899999999648950699961788752---
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCC-CCCCEEEE-------ECCCCEEEEECCCEEECCCCEEEEECCCCCCCC
Q ss_conf 2212221001220123322100134420223-43101244-------036740211023224305742200002322211
Q gi|254780675|r 229 SEISQFVQRSLQKRGIKILTESKISSVKQKG-DMVSVQVE-------RKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIG 300 (481)
Q Consensus 229 ~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~-~~~~v~~~-------~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~g 300 (481)
T Consensus 370 -----~~~~~Ar~~g~~v~~G~~V~~t~G~kdrv~~~~V~r~~~~~~~~~g~~~~~~aD~LlvSGGw~P~vHL~Sq~~GK 444 (1026)
T TIGR01372 370 -----ELVAEAREAGIEVIKGHAVAATEGGKDRVSGVKVARVDLGTDRESGAEERLDADALLVSGGWSPVVHLASQAGGK 444 (1026)
T ss_pred -----HHHHHHHHCCCEEEECCCEEECCCCCCCEEEEEEEEECCHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCC
T ss_conf -----479999875985986450221257721010468886244001135785247853898727766212220005883
Q ss_pred CCCCC--E-EEEECCCCEEECCCCEEECCCCCCCCCCC---CCCCCHHHHHHHHCCC
Q ss_conf 23573--2-66424874230258588304445532444---1232025555430246
Q gi|254780675|r 301 VKTSN--G-CIIVDGYGRTNVPGIYAIGDVAGAPMLAH---KAEHEGIICIEKIAGK 351 (481)
Q Consensus 301 i~~~~--g-~i~vd~~~qTs~p~IyA~GDv~g~~~l~~---~A~~qg~~aa~~i~~~ 351 (481)
T Consensus 445 ~~W~~~~~AFlP~~PtqkW~~~~~~~AGA~~G~~gl~a~l~dG~~~G~~aA~~~G~~ 501 (1026)
T TIGR01372 445 LAWDEARAAFLPGTPTQKWAVQGCILAGAVNGLFGLAAALADGAAAGAAAARAAGAE 501 (1026)
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 430133431586675544366772785300010107999999999999999861643