HHsearch alignment for GI: 254780675 and conserved domain: TIGR01816
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=97.66 E-value=5.6e-05 Score=54.94 Aligned_cols=34 Identities=32% Similarity=0.612 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 6434899989857999999999879939999788
Q gi|254780675|r 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36 (481)
Q Consensus 3 ~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~ 36 (481)
T Consensus 1 h~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKl 34 (615)
T TIGR01816 1 HKFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKL 34 (615)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9422798868756899999863279238898313