HHsearch alignment for GI: 254780675 and conserved domain: TIGR02028
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=97.89 E-value=4.6e-05 Score=55.59 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=57.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-----CCCEEEEEECCCCCHHHHHHH---HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 899989857999999999879939999788-----886246325673708899999---999999842117821348754
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYA-----GLGGICLNWGCIPTKSLLRSA---EILDHIQNAQHYGLNVAGKVE 78 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a~~G~~V~liEk~-----~~GGtC~~~GCiPsK~l~~~a---~~~~~~~~~~~~g~~~~~~~~ 78 (481)
T Consensus 3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~aKPCGG------AIPLCMv~EF~lP~d~iD--RRV~kMk~~SPSN~~ 74 (401)
T TIGR02028 3 VAVVGGGPAGASAAETLAKAGIQTFLLERKLDNAKPCGG------AIPLCMVDEFDLPRDIID--RRVTKMKMISPSNIA 74 (401)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCC------CCCCCCCCHHCCCHHHHH--CCCCEEEEECCCCHH
T ss_conf 889748974168999998503104633205678877888------644120101037866751--211022421641013
Q ss_pred CCHHHHHHHHHH----HHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 499999999999----999853446876301414210000
Q gi|254780675|r 79 FNIEDIVKRSRD----ISHRLNRGVEFLMHKNKVDIIWGK 114 (481)
Q Consensus 79 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~G~ 114 (481)
T Consensus 75 ~d~gr~L~~~~yIgM~RREVLDsflR~RA~~~GA~li~Gl 114 (401)
T TIGR02028 75 VDIGRTLKEHEYIGMVRREVLDSFLRERAADAGATLINGL 114 (401)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCE
T ss_conf 3200027887612514578888999999986488141444