HHsearch alignment for GI: 254780675 and conserved domain: TIGR02374
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=100.00 E-value=1.1e-36 Score=285.19 Aligned_cols=363 Identities=22% Similarity=0.325 Sum_probs=245.3
Q ss_pred EEEECCCHHHHHHHHHHH----HCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 899989857999999999----8799399997888862463256737088999999999998421178213487544999
Q gi|254780675|r 7 IILIGSGPAGYVAAIRAA----QLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE 82 (481)
Q Consensus 7 vvIIG~GpAG~~aA~~~a----~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (481)
T Consensus 1 LvlvGnGM~G~R~iE~vl~~~~~~~f~Itvfg~EP-----------------~~--~YdRv~LSs~l----~G--~~~~~ 55 (813)
T TIGR02374 1 LVLVGNGMVGHRLIEEVLKKDDKDEFEITVFGEEP-----------------HP--AYDRVLLSSVL----QG--EADLE 55 (813)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC-----------------CC--CCCCEEECEEE----CC--CCCHH
T ss_conf 97870474103477767512101773089982588-----------------95--43602211010----46--45577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
Q ss_conf 99999999999853446876301414210000011222210023687520013555543225863899724552575431
Q gi|254780675|r 83 DIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARP 162 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p 162 (481)
T Consensus 56 ~-----------l~L~~~D~y~~~~i~ly~ge~------vi~id~~~---------k~v~t~a~r~~~YD~LilATGS~p 109 (813)
T TIGR02374 56 D-----------LTLNSKDWYEKHGIKLYTGER------VIQIDREE---------KSVITDAGRTLSYDKLILATGSYP 109 (813)
T ss_pred H-----------CCCCCCCCCCCCCEEEEECCE------EEEEECCC---------CEEECCCCCCCCCCEEEEECCCCC
T ss_conf 8-----------066878831227548987688------89983576---------458704776335751787306657
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCC------CCCCC------CCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCC-CCCC
Q ss_conf 110111345554221245211133------34443------2156543321000232101333100000000122-2222
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALKPSK------TPKSL------IVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILP-VEDS 229 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~l~~------~p~~i------vIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~-~~d~ 229 (481)
T Consensus 110 filPipG~D~~~v~~fRti~D~~A~~~~A~~~~~aGhtdGGaViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~LM~~QLD~ 189 (813)
T TIGR02374 110 FILPIPGADKKGVYVFRTIEDLDAILAAAQRFKKAGHTDGGAVIGGGLLGLEAARALKNLGMDVSVIELAPFLMAKQLDQ 189 (813)
T ss_pred CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHH
T ss_conf 30866888888615870567999999999863126766785588674158899999987797064467648989999999
Q ss_pred CCCCCCCHHHHHCCCCCCC--CHHHHHHCCCC-CCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCC-C
Q ss_conf 2122210012201233221--00134420223-431012440367402110232243057422000023222112357-3
Q gi|254780675|r 230 EISQFVQRSLQKRGIKILT--ESKISSVKQKG-DMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTS-N 305 (481)
Q Consensus 230 ~~~~~~~~~l~~~Gv~i~~--~~~v~~v~~~~-~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~-~ 305 (481)
T Consensus 190 ~aG~lL~~~le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~DG~--~l~aDlvv~A~GirP~~~-LA-~~aGl~v~~R 265 (813)
T TIGR02374 190 TAGRLLQRELEKKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKDGS--SLEADLVVFAAGIRPRDE-LA-AEAGLKVNDR 265 (813)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCHHHHCEEECCCCC--EEEECEEEEECCCCCCHH-HH-HHCCCCCCCC
T ss_conf 9999999999857957986176110576415640123122423897--887037999515666368-99-8659735476
Q ss_pred EEEEECCCCEEECCCCEEECCCCCC----CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHH
Q ss_conf 2664248742302585883044455----324441232025555430246644321223200245430334000149687
Q gi|254780675|r 306 GCIIVDGYGRTNVPGIYAIGDVAGA----PMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEK 381 (481)
Q Consensus 306 g~i~vd~~~qTs~p~IyA~GDv~g~----~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~e 381 (481)
T Consensus 266 rGiivnd~~qTs~P~IYAvGEcA~~~G~~YGLVAPlY~~A~v~a~h~lG~~~-~~y~g-s~LSa---------------~ 328 (813)
T TIGR02374 266 RGIIVNDSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHILGVET-EEYEG-SDLSA---------------K 328 (813)
T ss_pred CCEEECCCCCCCCCCEEEEEEEEEECCEEEEECCCCHHHHHHHHHHHCCCCC-CCCCC-CCHHH---------------H
T ss_conf 7678726223788873356655510885897107614789999998648987-76767-65456---------------5
Q ss_pred HHCCCCCEEE-EEEE-CCCCHHHH-CCCCCCE-EEEEEEECCCCEEEEEEEECCCH--HHHHHHHH
Q ss_conf 6107972799-9996-46382332-0789821-89999988998599999982998--89999999
Q gi|254780675|r 382 ARSQGLDIRV-GKHS-FSANGKAI-TLGEDSG-MIKTIFNNKTGEVLGVHMVGPEV--TELIQGFS 441 (481)
Q Consensus 382 a~~~g~~~~~-~~~~-~~~~~~~~-~~~~~~G-~~kiv~~~~~~~ilG~~~~g~~A--~eli~~~~ 441 (481)
T Consensus 329 LK~~GvdV~S~Gd~~G~~e~~~~~~~~De~~~iYkk~vl~~d~~TL~GavL~GD~s~~~~L~~~v~ 394 (813)
T TIGR02374 329 LKLLGVDVASAGDAQGETEEAKSIKIYDEQKGIYKKLVLSDDKKTLLGAVLVGDTSDYGRLLDMVL 394 (813)
T ss_pred HHHCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHH
T ss_conf 403222455206544789984068887266451567888448826887899863055425888865