HHsearch alignment for GI: 254780675 and conserved domain: TIGR02733
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=97.82 E-value=2.4e-05 Score=57.65 Aligned_cols=146 Identities=18% Similarity=0.252 Sum_probs=80.9
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCC--CCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCC--CC
Q ss_conf 221222100122012332210013442022343--10124403674021102322430574220000232221123--57
Q gi|254780675|r 229 SEISQFVQRSLQKRGIKILTESKISSVKQKGDM--VSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVK--TS 304 (481)
Q Consensus 229 ~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~--~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~--~~ 304 (481)
T Consensus 232 Q~LSD~L~~al~~~GG~l~~gqrV~~I~~~~~~~~~~~v~~~r~~~~~~~~A~d~V~~lP----pq~L-L~l~~~~~~~~ 306 (499)
T TIGR02733 232 QVLSDRLVEALKRDGGRLLTGQRVTAIETKGGRAGWVVVVDSRKQEDEQVKADDVVANLP----PQSL-LELLGSELALP 306 (499)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHCCEEECC----HHHH-HHHCCCCCCCC
T ss_conf 357899999998679879860023234431684156887416411467744203120077----4116-87668766666
Q ss_pred CEEEEECCCCE-EECC-C---CEEE-------CCCCCCCCCCCCCCCCHHHHHHHHCCCCC------CCCCCCCCCEEEE
Q ss_conf 32664248742-3025-8---5883-------04445532444123202555543024664------4321223200245
Q gi|254780675|r 305 NGCIIVDGYGR-TNVP-G---IYAI-------GDVAGAPMLAHKAEHEGIICIEKIAGKSK------VYPLDKSKIPGCT 366 (481)
Q Consensus 305 ~g~i~vd~~~q-Ts~p-~---IyA~-------GDv~g~~~l~~~A~~qg~~aa~~i~~~~~------~~~~d~~~ip~~v 366 (481)
T Consensus 307 ~~Yr---~Rl~~LP~pSGA~V~Y~gvk~~alP~~cp~HlQf~~--D~~GP~gENNSLFVSiS~egDGRAP~G~~TlIAS~ 381 (499)
T TIGR02733 307 PGYR---KRLKKLPEPSGAFVLYLGVKRAALPVDCPPHLQFLS--DHQGPIGENNSLFVSISQEGDGRAPAGEATLIASS 381 (499)
T ss_pred HHHH---HHHHHCCCCCCEEEEEECCCHHHCCCCCCCCCEEEC--CCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 1479---999727788972886000133337777878604500--78888200364027865786888775753678742
Q ss_pred EEEHHHEEECCCHHHHHCC
Q ss_conf 4303340001496876107
Q gi|254780675|r 367 YCNPQVASIGLTEEKARSQ 385 (481)
Q Consensus 367 ft~P~ia~vG~te~ea~~~ 385 (481)
T Consensus 382 FTd~~-~W~~l~~~~Y~~~ 399 (499)
T TIGR02733 382 FTDVA-DWSSLDEEDYTAK 399 (499)
T ss_pred CCCCH-HHCCCCHHHHHHH
T ss_conf 13712-2117726789999