HHsearch alignment for GI: 254780675 and conserved domain: TIGR03140

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.42  E-value=5e-05  Score=55.29  Aligned_cols=99  Identities=11%  Similarity=0.361  Sum_probs=73.4

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECC--CCCC--------CCC----CCCCCCCCCHHHHHCCCCCCCCHHHH
Q ss_conf             444321565433210002321013331000000--0012--------222----22212221001220123322100134
Q gi|254780675|r  188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVK--DRIL--------PVE----DSEISQFVQRSLQKRGIKILTESKIS  253 (481)
Q Consensus       188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~--~~ll--------~~~----d~~~~~~~~~~l~~~Gv~i~~~~~v~  253 (481)
T Consensus       212 ~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~GGqv~~t~~IeNypG~~~i~G~eL~~~~~~qa~~~gv~~~~~~~v~  291 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK  291 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf             88889989678999999999977997699924877531303460044898777579999999999997496899133699


Q ss_pred             HHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEE
Q ss_conf             4202234310124403674021102322430574220
Q gi|254780675|r  254 SVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGN  290 (481)
Q Consensus       254 ~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn  290 (481)
T Consensus       292 ~i~~~~~~~~v~~--~~g--~~~~aktVIiATGa~~r  324 (515)
T TIGR03140       292 KIETEDGLIVVTL--ESG--EVLKAKSVIVATGARWR  324 (515)
T ss_pred             EEECCCCCEEEEE--CCC--CEEEECEEEECCCCCCC
T ss_conf             9972798189998--799--89993979995698735