HHsearch alignment for GI: 254780675 and conserved domain: TIGR03143

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00  E-value=4.6e-43  Score=331.58  Aligned_cols=288  Identities=23%  Similarity=0.313  Sum_probs=204.4

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             98643489998985799999999987993999978888624632567370889999999999984211782134875449
Q gi|254780675|r    1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFN   80 (481)
Q Consensus         1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   80 (481)
T Consensus         1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~GGqi~~t~~---------------VeN-------YPG~~~is   58 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSE---------------VVN-------YPGILNTT   58 (555)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCC---------------EEE-------CCCCCCCC
T ss_conf             98447299999568899999999978996799966886865563685---------------687-------88877986


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf             99999999999998534468763014142100000112222100236875200135555432258638997245525754
Q gi|254780675|r   81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA  160 (481)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs  160 (481)
T Consensus        59 G~eL~~~m~~qA~-----------~~Gve~~~~~V~~-------i~~~g-~-------~k~V~t~~g~~~ak~VIIATGa  112 (555)
T TIGR03143        59 GPELMQEMRQQAQ-----------DFGVKFLQAEVLD-------VDFDG-D-------IKTIKTARGDYKTLAVLIATGA  112 (555)
T ss_pred             HHHHHHHHHHHHH-----------HCCCEEEEEEEEE-------EECCC-C-------CEEEEECCCEEEECEEEECCCC
T ss_conf             8999999999999-----------7796999656999-------97379-9-------5899988978996979999999


Q ss_pred             CCCCCC--CCCC-CCCC---CCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf             311101--1134-5554---221245211133344432156543321000232101333100000000122222221222
Q gi|254780675|r  161 RPRHIE--GIEP-DSHL---IWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQF  234 (481)
Q Consensus       161 ~p~~~~--g~~~-~~~~---~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~  234 (481)
T Consensus       113 ~pr~LgipGE~ef~GrGVsYCAtCDG~ff---~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f~------a~~~  183 (555)
T TIGR03143       113 SPRKLGFPGEEEFTGRGVAYCATCDGEFF---TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT------CAKL  183 (555)
T ss_pred             CCCCCCCCCHHHCCCCCEEEEECCCHHHC---CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCC------CCHH
T ss_conf             71438999732216871377403763241---79869998388899999999997489089999787568------5899


Q ss_pred             CCHH-HHHCCCCCCCCHHHHHHCCCCCCCCEEEE-ECCCCEEEEECC------CEEECCCCEEEEECCCCCCCCCCCC-C
Q ss_conf             1001-22012332210013442022343101244-036740211023------2243057422000023222112357-3
Q gi|254780675|r  235 VQRS-LQKRGIKILTESKISSVKQKGDMVSVQVE-RKDGSVSSMQAE------KLLLSAGVQGNIENIGLEKIGVKTS-N  305 (481)
Q Consensus       235 ~~~~-l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~-~~dG~~~~i~~D------~vl~a~Gr~Pn~~~L~Le~~gi~~~-~  305 (481)
T Consensus       184 ~~e~~~~~~kI~v~~nt~v~ei~G~~~v~~~~~~n~~tGe~~~~~~~~~~~t~GVFVaiG~~PnTe---L~k~~VelDe~  260 (555)
T TIGR03143       184 IAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE---LFKGVVELDKR  260 (555)
T ss_pred             HHHHHHHCCCEEEEECCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCH---HHHCCCCCCCC
T ss_conf             999998579859997888999986785489999998889789960465667628999979965415---66073258889


Q ss_pred             EEEEECCCCEEECCCCEEECCCCCCC-CCCCCCCCCHHHHHHHH
Q ss_conf             26642487423025858830444553-24441232025555430
Q gi|254780675|r  306 GCIIVDGYGRTNVPGIYAIGDVAGAP-MLAHKAEHEGIICIEKI  348 (481)
Q Consensus       306 g~i~vd~~~qTs~p~IyA~GDv~g~~-~l~~~A~~qg~~aa~~i  348 (481)
T Consensus       261 GyI~tDe~m~TnVpGVyAAGDV~~k~lrQvvTA~~dGaiAA~~a  304 (555)
T TIGR03143       261 GYIPTNEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSA  304 (555)
T ss_pred             CEEEECCCCCCCCCCEEECCCCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf             71973999705999889883452898773547087579999999