HHsearch alignment for GI: 254780675 and conserved domain: TIGR03143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=4.6e-43 Score=331.58 Aligned_cols=288 Identities=23% Similarity=0.313 Sum_probs=204.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98643489998985799999999987993999978888624632567370889999999999984211782134875449
Q gi|254780675|r 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFN 80 (481)
Q Consensus 1 Ms~~yDvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (481)
T Consensus 1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~GGqi~~t~~---------------VeN-------YPG~~~is 58 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSE---------------VVN-------YPGILNTT 58 (555)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCC---------------EEE-------CCCCCCCC
T ss_conf 98447299999568899999999978996799966886865563685---------------687-------88877986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 99999999999998534468763014142100000112222100236875200135555432258638997245525754
Q gi|254780675|r 81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA 160 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs 160 (481)
T Consensus 59 G~eL~~~m~~qA~-----------~~Gve~~~~~V~~-------i~~~g-~-------~k~V~t~~g~~~ak~VIIATGa 112 (555)
T TIGR03143 59 GPELMQEMRQQAQ-----------DFGVKFLQAEVLD-------VDFDG-D-------IKTIKTARGDYKTLAVLIATGA 112 (555)
T ss_pred HHHHHHHHHHHHH-----------HCCCEEEEEEEEE-------EECCC-C-------CEEEEECCCEEEECEEEECCCC
T ss_conf 8999999999999-----------7796999656999-------97379-9-------5899988978996979999999
Q ss_pred CCCCCC--CCCC-CCCC---CCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 311101--1134-5554---221245211133344432156543321000232101333100000000122222221222
Q gi|254780675|r 161 RPRHIE--GIEP-DSHL---IWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQF 234 (481)
Q Consensus 161 ~p~~~~--g~~~-~~~~---~~t~~~~l~l~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll~~~d~~~~~~ 234 (481)
T Consensus 113 ~pr~LgipGE~ef~GrGVsYCAtCDG~ff---~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f~------a~~~ 183 (555)
T TIGR03143 113 SPRKLGFPGEEEFTGRGVAYCATCDGEFF---TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT------CAKL 183 (555)
T ss_pred CCCCCCCCCHHHCCCCCEEEEECCCHHHC---CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCC------CCHH
T ss_conf 71438999732216871377403763241---79869998388899999999997489089999787568------5899
Q ss_pred CCHH-HHHCCCCCCCCHHHHHHCCCCCCCCEEEE-ECCCCEEEEECC------CEEECCCCEEEEECCCCCCCCCCCC-C
Q ss_conf 1001-22012332210013442022343101244-036740211023------2243057422000023222112357-3
Q gi|254780675|r 235 VQRS-LQKRGIKILTESKISSVKQKGDMVSVQVE-RKDGSVSSMQAE------KLLLSAGVQGNIENIGLEKIGVKTS-N 305 (481)
Q Consensus 235 ~~~~-l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~-~~dG~~~~i~~D------~vl~a~Gr~Pn~~~L~Le~~gi~~~-~ 305 (481)
T Consensus 184 ~~e~~~~~~kI~v~~nt~v~ei~G~~~v~~~~~~n~~tGe~~~~~~~~~~~t~GVFVaiG~~PnTe---L~k~~VelDe~ 260 (555)
T TIGR03143 184 IAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE---LFKGVVELDKR 260 (555)
T ss_pred HHHHHHHCCCEEEEECCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCH---HHHCCCCCCCC
T ss_conf 999998579859997888999986785489999998889789960465667628999979965415---66073258889
Q ss_pred EEEEECCCCEEECCCCEEECCCCCCC-CCCCCCCCCHHHHHHHH
Q ss_conf 26642487423025858830444553-24441232025555430
Q gi|254780675|r 306 GCIIVDGYGRTNVPGIYAIGDVAGAP-MLAHKAEHEGIICIEKI 348 (481)
Q Consensus 306 g~i~vd~~~qTs~p~IyA~GDv~g~~-~l~~~A~~qg~~aa~~i 348 (481)
T Consensus 261 GyI~tDe~m~TnVpGVyAAGDV~~k~lrQvvTA~~dGaiAA~~a 304 (555)
T TIGR03143 261 GYIPTNEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSA 304 (555)
T ss_pred CEEEECCCCCCCCCCEEECCCCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf 71973999705999889883452898773547087579999999