RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase
[Candidatus Liberibacter asiaticus str. psy62]
(481 letters)
>gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 482 bits (1242), Expect = e-136
Identities = 205/472 (43%), Positives = 296/472 (62%), Gaps = 21/472 (4%)
Query: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE-YAGLGGICLNWGCIPTKSLLRSAEI 59
M + YD+++IG+GPAGYVAAIRAAQLG KVA+VE LGG CLN GCIP+K+LL +AE+
Sbjct: 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEV 60
Query: 60 LDHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKN 119
++ ++A A + + E ++ R + L GVE L+ KN VD+I G+A +
Sbjct: 61 IEEARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD 120
Query: 120 PSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYF 179
P + V+ + T A +IIIATG+RPR G D I
Sbjct: 121 PHTVEVTGE----------------DKETITADNIIIATGSRPRIPPGPGIDGARILDSS 164
Query: 180 DALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSL 239
DAL + PKSL+++G G IG+EF+S + +L V+++E DRILP ED EIS+ + + L
Sbjct: 165 DALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQL 224
Query: 240 QKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKI 299
+K G+KIL +K+++V++K D V V +DG +++A+ +L++ G + N + +GLE
Sbjct: 225 EKGGVKILLNTKVTAVEKKDD--GVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENA 282
Query: 300 GVKT-SNGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLD 358
GV+ G I VD TNVPGIYAIGDV G PMLAH A EG I E IAG K P+D
Sbjct: 283 GVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGG-KRTPID 341
Query: 359 KSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNN 418
IP + +P++AS+GLTEE+A+ G+D +VGK F+ANG+AIT+GE G +K + +
Sbjct: 342 YRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDK 401
Query: 419 KTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKES 470
+TG +LG H+VGP +ELI ++A+ + T E+L T+ HPT+SE +KE+
Sbjct: 402 ETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEA 453
>gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy
production and conversion].
Length = 506
Score = 371 bits (954), Expect = e-103
Identities = 191/483 (39%), Positives = 283/483 (58%), Gaps = 24/483 (4%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGGICLNWGCIPTKSLLRSAEILDHI 63
YD+++IG GP GYVAAI+AAQLG K A VE G LGG CLN GCIP+K+LL ++ +
Sbjct: 40 YDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEA 99
Query: 64 QN--AQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPS 121
Q+ G++V+ V +++ ++K + +L G+E L KNKV + G + +P+
Sbjct: 100 QHEDFASRGIDVSS-VSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN 158
Query: 122 EITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFDA 181
+++V K + KAK+IIIATG+ GI D I + A
Sbjct: 159 KVSVKKID--------------GEDQIIKAKNIIIATGSEVTPFPGITIDEKKIVSSTGA 204
Query: 182 LKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQK 241
L + PK L V+G+G IG+E S + L +V+++E D+I V D EIS+ QR LQK
Sbjct: 205 LSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQK 264
Query: 242 RGIKILTESKISSVKQKGDM-VSVQVE-RKDGSVSSMQAEKLLLSAGVQGNIENIGLEKI 299
+GIK +K++S + GD V ++VE K G +++ + LL+S G + E +GLEKI
Sbjct: 265 QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKI 324
Query: 300 GVKTSN-GCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLD 358
G++ G +IV+ +T VP IYAIGDV PMLAHKAE EGI +E IAG +D
Sbjct: 325 GIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHG--HVD 382
Query: 359 KSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNN 418
+ IP Y +P+VA +G TEE+ + +G+ +VGK FSAN +A T + G +K + +
Sbjct: 383 YNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADK 442
Query: 419 KTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAY-GR 477
+T ++LGVH++GP ELI S+A+ + E++ HPT+SE KE+ + AY G+
Sbjct: 443 ETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAYDGK 502
Query: 478 AIH 480
IH
Sbjct: 503 PIH 505
>gnl|CDD|35626 KOG0405, KOG0405, KOG0405, Pyridine nucleotide-disulphide
oxidoreductase [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 478
Score = 249 bits (638), Expect = 1e-66
Identities = 146/470 (31%), Positives = 238/470 (50%), Gaps = 27/470 (5%)
Query: 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE-YAGLGGICLNWGCIPTKSLLRSAEIL 60
+ +D ++IG G G +A RAA G KVA+ E GLGG C+N GC+P K + +A+
Sbjct: 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYS 77
Query: 61 DHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP 120
+ +++A+ YG + + F+ + I ++ RLN + + K V +I G+A +P
Sbjct: 78 EEMEDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSP 137
Query: 121 SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPR--HIEGIEPDSHLIWTY 178
E+ V + Y AKHI+IATG RP +I G E L
Sbjct: 138 GEVEVEVNDGTKI--------------VYTAKHILIATGGRPIIPNIPGAE----LGIDS 179
Query: 179 FDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRS 238
+ PK ++V+G+G I VEF+ + L + L ++++L D IS V
Sbjct: 180 DGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEH 239
Query: 239 LQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEK 298
L+ RGI + S ++ V + D + + + + + LL + G + N + + LE
Sbjct: 240 LEGRGINVHKNSSVTKVIKTDDGLELVITSHG---TIEDVDTLLWAIGRKPNTKGLNLEN 296
Query: 299 IGVKT-SNGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPL 357
+GVKT NG IIVD Y TNVP I+A+GDV G L A G ++ G K L
Sbjct: 297 VGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKL 356
Query: 358 DKSKIPGCTYCNPQVASIGLTEEKARSQ--GLDIRVGKHSFSANGKAITLGEDSGMIKTI 415
D +P + +P + ++GLTEE+A + DI+V F+ A++ ++ ++K +
Sbjct: 357 DYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLV 416
Query: 416 FNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISE 465
K+ +V+GVHM G + E++QGF++A+ + T+ + TV HPT +E
Sbjct: 417 CAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAE 466
>gnl|CDD|39914 KOG4716, KOG4716, KOG4716, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 503
Score = 189 bits (481), Expect = 2e-48
Identities = 135/481 (28%), Positives = 225/481 (46%), Gaps = 38/481 (7%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA---------GLGGICLNWGCIPTKSLLR 55
YD+I+IG G G A AA LG KVA +++ GLGG C+N GCIP K L+
Sbjct: 20 YDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIP-KKLMH 78
Query: 56 SAEILDH-IQNAQHYGLNV-AGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWG 113
A +L + +A+ YG NV K++ + +VK ++ LN G + + KV+ I
Sbjct: 79 QAALLGEALHDARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINS 138
Query: 114 KATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSH 173
+P +I + K E A++ +IATG RPR+ I
Sbjct: 139 YGEFVDPHKIKATN-----------KKGK---ERFLTAENFVIATGLRPRYP-DIPGAKE 183
Query: 174 LIWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQ 233
T D P +V+G+G + +E + F K DV+++ V+ +L D ++++
Sbjct: 184 YGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVM-VRSILLRGFDQDMAE 242
Query: 234 FVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERK--DGSVSSMQAEKLLLSAGVQGNI 291
V +++RGIK L ++ V+Q D + G + + +L + G +
Sbjct: 243 LVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALT 302
Query: 292 ENIGLEKIGVKTS--NGCIIVDGYGRTNVPGIYAIGDV-AGAPMLAHKAEHEGIICIEKI 348
+++ L+ GVKT+ +G I VD TNVP +YA+GD+ P L A G + ++
Sbjct: 303 DDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRL 362
Query: 349 AGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQ-GLDIRVGKHSFSANGKAITLGE 407
S +D + + + +GL+EE A + G D HS+ +
Sbjct: 363 FAGSTQL-MDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQR 421
Query: 408 DSGM--IKTIFNNKTGE-VLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTIS 464
D +K + + VLG+H++GP E+IQGF+ A+ T+++L +T+ HPT +
Sbjct: 422 DVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTA 481
Query: 465 E 465
E
Sbjct: 482 E 482
>gnl|CDD|145812 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide
oxidoreductase, dimerization domain. This family
includes both class I and class II oxidoreductases and
also NADH oxidases and peroxidases.
Length = 110
Score = 147 bits (374), Expect = 6e-36
Identities = 46/110 (41%), Positives = 76/110 (69%)
Query: 362 IPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKTG 421
+P + +P++AS+GLTEE+A+ +G +++VGK F ANG+A+ GE G +K + + +TG
Sbjct: 1 VPSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETG 60
Query: 422 EVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESI 471
+LG H+VGP ELIQ ++A+ + T E+L +T+ HPT+SE + E+
Sbjct: 61 RILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHAHPTLSEALVEAA 110
>gnl|CDD|30795 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 86.1 bits (212), Expect = 2e-17
Identities = 86/336 (25%), Positives = 147/336 (43%), Gaps = 20/336 (5%)
Query: 133 VQPQHPIPKKV-LGEGTYKAKHIIIATGARPRHIEG-IEPDSHLIWTYFDALK---PSKT 187
V P K V L +G + ++++ATGARPR + DA ++
Sbjct: 76 VTSIDPENKVVLLDDGEIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEP 135
Query: 188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILP-VEDSEISQFVQRSLQKRGIKI 246
PK ++V+G+G IG+E + V+LIE DR+ + D E+++ + L+K G+++
Sbjct: 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVEL 195
Query: 247 LTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNG 306
L +K+ V+ KG+ + V ++A+ +++ G + N+ G+ + G
Sbjct: 196 LLGTKVVGVEGKGNTL-VVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGG 254
Query: 307 CIIVDGYGRT-NVPGIYAIGDVAGAP-----MLAHKAEHEGIICIEKIAGKSKVYPLDKS 360
++VD G T P +YA GDVA P A + +IA ++ L
Sbjct: 255 AVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGALRIP 314
Query: 361 KIPGCTYCNP---QVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFN 417
+ G + AS GLTE K R + + V G + IK + +
Sbjct: 315 GLLGTVISDVGDLCAASTGLTEGKERGIDVVLVVSGGKDPRAHLY--PGAELVGIKLVGD 372
Query: 418 NKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEEL 453
TG +LG + EV + I ++A+ L T EL
Sbjct: 373 ADTGRILGGQEL--EVLKRIGALALAIGLGDTVAEL 406
Score = 33.0 bits (74), Expect = 0.21
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE 34
D++++G+GP G AA AA+ G KV ++E
Sbjct: 133 AEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIE 166
>gnl|CDD|143852 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 84.9 bits (211), Expect = 4e-17
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 190 SLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTE 249
++V+G G IG+EF+S L V+++E +DR+L D EI++ +Q L+K GI++L
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60
Query: 250 SKISSVKQKGDMVSVQVERKDG 271
+ + ++ GD V V +E DG
Sbjct: 61 TTVEEIEGNGDGVLVVLETGDG 82
>gnl|CDD|31444 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 84.9 bits (210), Expect = 5e-17
Identities = 54/260 (20%), Positives = 109/260 (41%), Gaps = 50/260 (19%)
Query: 141 KKVL--GEGTYKAKHIIIATGARPRH--IEGIEPDSHLIWTYFDALK------------- 183
KKV G ++++A G+ + I G + + T DAL+
Sbjct: 88 KKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS 147
Query: 184 ---PSKTPKSLIVMGSGAIGVEFSS-------------FYKSLDVDVSLIEVKDRILPVE 227
+ +++++G G GVE + ++ V L+E RILP+
Sbjct: 148 QEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMF 207
Query: 228 DSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287
++S++ +R+L+K G+++L + ++ V G V ++ + + + ++ +AGV
Sbjct: 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADT---VVWAAGV 260
Query: 288 QGNIENIGLEKIGVKT-SNGCIIVDGYGR-TNVPGIYAIGDVAGA------PMLAHKAEH 339
+ + + + G++T G ++V+ + P I+A GD A P A A
Sbjct: 261 RAS--PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQ 318
Query: 340 EGIICIEKIAGKSKVYPLDK 359
+G + I + K PL
Sbjct: 319 QGEYAAKNIKARLKGKPLKP 338
>gnl|CDD|36550 KOG1336, KOG1336, KOG1336, Monodehydroascorbate/ferredoxin
reductase [General function prediction only].
Length = 478
Score = 84.6 bits (209), Expect = 6e-17
Identities = 54/199 (27%), Positives = 99/199 (49%), Gaps = 14/199 (7%)
Query: 143 VLGEG-TYKAKHIIIATGARPRHIEGIEPDSHLIWTYF-----DALKPSKTPKSLIV-MG 195
VLG G T K +IIATG+ + ++ + ++ + L + +V +G
Sbjct: 161 VLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVG 220
Query: 196 SGAIGVEFSSFYKSLDVDVSLIEVKDRILPVE-DSEISQFVQRSLQKRGIKILTESKISS 254
G IG+E ++ S V+++ + +LP I QF + + +G+K + +SS
Sbjct: 221 GGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSS 280
Query: 255 VKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKT-SNGCIIVDGY 313
++ D +V+ KDG ++A+ +++ G++ N + G+ S G I VD +
Sbjct: 281 LEGNSDGEVSEVKLKDGKT--LEADLVVVGIGIK---PNTSFLEKGILLDSKGGIKVDEF 335
Query: 314 GRTNVPGIYAIGDVAGAPM 332
+T+VP +YAIGDVA P+
Sbjct: 336 FQTSVPNVYAIGDVATFPL 354
>gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 81.1 bits (200), Expect = 7e-16
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 17/220 (7%)
Query: 145 GEGTYKAKHIIIATGARPRHIEGIEPDSHLIWT---YFDALKPSKTPKSLIVMGSGAIGV 201
+GTY+AK +IIATGA R + G+ + Y K ++V+G G V
Sbjct: 98 DKGTYEAKAVIIATGAGARKL-GVPGEEEFEGKGVSYCATCDGFFKGKDVVVIGGGDSAV 156
Query: 202 EFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDM 261
E + + + V+L+ +D E V+R + I++LT + + + GD
Sbjct: 157 EEALYLSKIAKKVTLVHRRDEFRAEEIL-----VERLKKNVKIEVLTNTVVKEIL--GDD 209
Query: 262 V-SVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGRTNVPG 320
V V ++ G + + + ++ G N E L+ +GV NG I+VD T+VPG
Sbjct: 210 VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTE--LLKGLGVLDENGYIVVDEEMETSVPG 267
Query: 321 IYAIGDVAGAP-MLAHKAEHEGIICIEKIAGKSKVYPLDK 359
I+A GDVA A +G I ++ + + L +
Sbjct: 268 IFAAGDVADKNGRQIATAAGDG--AIAALSAERYLESLAE 305
Score = 41.4 bits (97), Expect = 6e-04
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 3 RLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40
++YD+I+IG GPAG AAI AA+ G KV ++ G G
Sbjct: 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG 39
>gnl|CDD|31443 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 70.7 bits (173), Expect = 8e-13
Identities = 63/277 (22%), Positives = 125/277 (45%), Gaps = 31/277 (11%)
Query: 148 TYKAKHIIIATGARPR--HIEGIE-PDSHLIWTYFDALK---PSKTPKSLIVMGSGAIGV 201
T +IIATG+ P I G + P + T D ++ K +V+G G +G+
Sbjct: 99 TVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGL 158
Query: 202 EFSSFYKSLDVDVSLIEVKDRILPVE-DSEISQFVQRSLQKRGIKILTESKISSVKQKGD 260
E + K L ++V+++ + ++ + D + ++R L+ GIK+L E ++ + G+
Sbjct: 159 EAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEK--NTEEIVGE 216
Query: 261 MVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGRTNVPG 320
V DG+ + A+ ++++ G++ N E ++ G+ + G I+V+ Y +T+ P
Sbjct: 217 DKVEGVRFADGTE--IPADLVVMAVGIRPNDELA--KEAGLAVNRG-IVVNDYMQTSDPD 271
Query: 321 IYAIGDVAG----APMLAHKAEHEGIICIEKIAG-KSKVY----PLDKSKIPGCTYCNPQ 371
IYA+G+ A L + + + + G +++ Y K K+ G
Sbjct: 272 IYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGV-----D 326
Query: 372 VASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGED 408
V S G +E ++ + R K + L +D
Sbjct: 327 VFSAGDFQETEGAESIVFR---DEQRGIYKKLVLKDD 360
>gnl|CDD|33432 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 64.9 bits (158), Expect = 4e-11
Identities = 81/340 (23%), Positives = 136/340 (40%), Gaps = 72/340 (21%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQ 64
YD++++G GPAG AAI AA+ G + +V
Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLV------------------------------- 240
Query: 65 NAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEIT 124
A+ +G V + IE+ + +L +E + + VD++ L+ S++
Sbjct: 241 -AERFGGQVLDTM--GIENFISVPETEGPKLAAALEAHVKQYDVDVM----NLQRASKLE 293
Query: 125 VSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHI----------EGIEPDSHL 174
PA I ++ KA+ +I+ATGAR R++ +G+ H
Sbjct: 294 ------PAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHC 347
Query: 175 IWTYFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQF 234
F K + V+G G GVE + + V+L+E + +
Sbjct: 348 DGPLFKG-------KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL------KADAV 394
Query: 235 VQRSLQK-RGIKILTESKISSVKQKGDMVS--VQVERKDGSVSSMQAEKLLLSAGVQGNI 291
+Q L+ + I+T ++ + VK GD V+ +R G ++ E + + G+ N
Sbjct: 395 LQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNT 454
Query: 292 ENIGLEKIGVKTSNGCIIVDGYGRTNVPGIYAIGDVAGAP 331
E L+ G IIVD G TNVPG++A GD P
Sbjct: 455 E--WLKGAVELNRRGEIIVDARGETNVPGVFAAGDCTTVP 492
>gnl|CDD|37706 KOG2495, KOG2495, KOG2495, NADH-dehydrogenase (ubiquinone) [Energy
production and conversion].
Length = 491
Score = 61.1 bits (148), Expect = 6e-10
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 46/230 (20%)
Query: 153 HIIIATGARPR--HIEGIEPDSH--------------LIWTYFDALKPSKTPK------S 190
+++IA GA P I G+E ++H +I A P + +
Sbjct: 161 YLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLH 220
Query: 191 LIVMGSGAIGVEFS------------SFYKSL--DVDVSLIEVKDRILPVEDSEISQFVQ 236
+V+G G GVEF+ Y L D+ V+LIE D IL + D + ++ +
Sbjct: 221 FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAE 280
Query: 237 RSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGL 296
+ GI + T + + V +K ++ + KDG + + L+ + G L
Sbjct: 281 NQFVRDGIDLDTGTMVKKVTEK----TIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDL 336
Query: 297 -EKIGVKTSNGCIIVDGYGR-TNVPGIYAIGDVA---GAPMLAHKAEHEG 341
++I + G + VD + R V ++AIGD A G A AE +G
Sbjct: 337 MKQIDEQGRRG-LAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQG 385
Score = 27.6 bits (61), Expect = 7.1
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 24/140 (17%)
Query: 178 YFDALKPSKTP--------KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL----- 224
Y +A K P K ++V+GSG + + DV+++ ++ L
Sbjct: 37 YSEANPSEKVPGPKNGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLL 96
Query: 225 ---PVEDSEISQFVQ-----RSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGS--VS 274
V E+ V+ + +K L E++ + + V + D S
Sbjct: 97 PSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECTKIDPDNKKVHCRSLTADSSDKEF 155
Query: 275 SMQAEKLLLSAGVQGNIENI 294
+ + L+++ G + N I
Sbjct: 156 VIGYDYLVIAVGAEPNTFGI 175
>gnl|CDD|35625 KOG0404, KOG0404, KOG0404, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 322
Score = 52.3 bits (125), Expect = 3e-07
Identities = 72/338 (21%), Positives = 125/338 (36%), Gaps = 61/338 (18%)
Query: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEIL 60
M+ ++++IGSGPA + AAI AA+ K + E GI P L + ++
Sbjct: 5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIA------PGGQLTTTTDV- 57
Query: 61 DHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP 120
+N + + G +++ + R S R +G +
Sbjct: 58 ---ENFPGFPDGITGP------ELMDKMRKQSER-----------------FGTEIITET 91
Query: 121 SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWT--- 177
V S+P K A +I+ATGA + + W
Sbjct: 92 VS-KVDLSSKPF--------KLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGI 142
Query: 178 ----YFDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQ 233
D P K L V+G G +E + F V +I +D S+I Q
Sbjct: 143 SACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF---RASKIMQ 199
Query: 234 FVQRSLQKRGIKILTESKISSVKQKGDMVS-VQVER-KDGSVSSMQAEKLLLSAGVQGNI 291
QR+ + I++L + G +++ ++++ K G + + L + G
Sbjct: 200 --QRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPAT 257
Query: 292 ENIGLEKIGVKT-SNGCIIV-DGYGRTNVPGIYAIGDV 327
+ K V+ +G I+ G T+VPG++A GDV
Sbjct: 258 K---FLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDV 292
>gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 51.7 bits (123), Expect = 4e-07
Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 33/171 (19%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGL-GGICLNWGCIPTKSLLR-----SAE 58
YD++++G+GPAG AA R A+ G V ++E G G + ++L E
Sbjct: 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE 63
Query: 59 ILDHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNR------GVEFLMHKNKVDIIW 112
I + A+ Y +E + + R + G E +I
Sbjct: 64 IERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIR 123
Query: 113 GKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPR 163
+ + V G+ +AK +I A G
Sbjct: 124 E----DDGVVVGVRA-----------------GDDEVRAKVVIDADGVNSA 153
>gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 51.1 bits (123), Expect = 7e-07
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWG----CIPTKSLLRSAEILD 61
D+++IGSG AG AA+ AA+ G KVA+VE G W + D
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGI--D 58
Query: 62 HIQNAQHYGLNVAG 75
L
Sbjct: 59 SPDLHPTDTLKGLD 72
>gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 48.2 bits (114), Expect = 5e-06
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40
+YD+++IG+G G AA A+ G KV ++E G
Sbjct: 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG 39
>gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 45.7 bits (108), Expect = 3e-05
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36
+D+++IG G AG AAI AA+ G KVA++ A
Sbjct: 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKA 38
>gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 44.5 bits (106), Expect = 7e-05
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVE 34
YD+I+IG G AG +AAI AA+ G +V ++E
Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIE 30
>gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 43.9 bits (103), Expect = 9e-05
Identities = 27/168 (16%), Positives = 50/168 (29%), Gaps = 20/168 (11%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVE------YAGLGGICLNWGCIPTKSLLRSAE 58
D+ ++G+GPAG A+ A+ G V ++E GI L+ L
Sbjct: 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALS---PNALRALERLG 59
Query: 59 ILDHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMH----KNKVDIIWGK 114
+ D ++ + + D R I G L + + ++ +
Sbjct: 60 LWDRLEALGVP------PLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEA 113
Query: 115 ATLKNPSEITVSKPSQP-AVQPQHPIPKKVLGEGTYKAKHIIIATGAR 161
A + + T A ++ A GA
Sbjct: 114 ARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN 161
>gnl|CDD|36560 KOG1346, KOG1346, KOG1346, Programmed cell death 8
(apoptosis-inducing factor) [Signal transduction
mechanisms].
Length = 659
Score = 43.6 bits (102), Expect = 1e-04
Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 24/191 (12%)
Query: 155 IIATGARPRHIEGIE---PDSHLIWTYFDAL-------KPSKTPKSLIVMGSGAIGVEFS 204
+IATG RP+ ++ E + TYF K +S+ ++G+G +G E +
Sbjct: 304 LIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELA 363
Query: 205 SF--YKSLDVDVSLIEVKDRILPVED---SEISQFVQRSLQKRGIKILTESKISSVKQKG 259
K + V + +V + +E +SQ+ ++K G+ + +K+ SV++
Sbjct: 364 CSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRK-- 421
Query: 260 DMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDG--YGRTN 317
++ ++ DG S ++ + ++++ G + N E + + G V+ R N
Sbjct: 422 CCKNLVLKLSDG--SELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAREN 479
Query: 318 VPGIYAIGDVA 328
V + GD A
Sbjct: 480 V---WVAGDAA 487
>gnl|CDD|144651 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 42.9 bits (102), Expect = 2e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTK 51
D+I+IG G AG AA+ AA++G KV + C P+
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLL--ITHNTDTIAELSCNPSI 44
>gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 42.1 bits (99), Expect = 3e-04
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE 34
+D+I+IG GPAG +AAI AA+ G +V +++
Sbjct: 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLID 33
>gnl|CDD|30379 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 40.6 bits (95), Expect = 9e-04
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 306 GCIIVDGYGRTNVPGIYAIGDVA-----GAPMLAHKAEHEGII----CIEKIAGKSKVYP 356
G I VD GRT++PG+YAIG+VA GA LA + E ++ E IAG+ P
Sbjct: 342 GGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRLAPAP 401
Query: 357 LDKSKIP 363
+ +P
Sbjct: 402 REAPTLP 408
Score = 29.1 bits (65), Expect = 3.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 6 DIILIGSGPAGYVAAIRAAQLGFKVAIV 33
D+++IGSG AG AA+ A F+V ++
Sbjct: 9 DVLIIGSGLAGLTAALSLAP-SFRVTVL 35
>gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis
[Coenzyme metabolism].
Length = 262
Score = 39.5 bits (92), Expect = 0.002
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEY-------AGLGGICLNWGCI--PTKSLLRS 56
D+I++G+GP+G AA A+ G KVAI E GG+ N + +L
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDE 91
Query: 57 AEI 59
I
Sbjct: 92 FGI 94
>gnl|CDD|37626 KOG2415, KOG2415, KOG2415, Electron transfer flavoprotein
ubiquinone oxidoreductase [Energy production and
conversion].
Length = 621
Score = 37.6 bits (87), Expect = 0.007
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLG------FKVAIVEYAG-LGGICLNWGCIPTKSL 53
D++++G+GPAG AAIR QL +V +VE A +GG L+ I +L
Sbjct: 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGAL 132
>gnl|CDD|32889 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
[Amino acid transport and metabolism].
Length = 421
Score = 37.6 bits (87), Expect = 0.008
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEY 35
+D+ +IG G AG + Q G + AIV
Sbjct: 3 FDVAIIGGGLAGLTCGLALQQAGKRCAIVNR 33
>gnl|CDD|30839 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 37.2 bits (86), Expect = 0.011
Identities = 74/365 (20%), Positives = 133/365 (36%), Gaps = 73/365 (20%)
Query: 10 IGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHY 69
IG+GPAG AA ++ G V + E L G L +G IP +ILD
Sbjct: 129 IGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG-IP--DFKLPKDILDR------- 178
Query: 70 GLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPS 129
L + + + V+ RDI+ +E L+ + + A P +I
Sbjct: 179 RLELLERSGVEFKLNVRVGRDIT------LEELLKEYDAVFLATGAGKPRPLDI------ 226
Query: 130 QPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFDALKPSKTPK 189
G AK + A R + + D + + P K
Sbjct: 227 ----------------PGE-DAKGVAFALDFLTRLNKEVLGD------FAEDRTPPAKGK 263
Query: 190 SLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEI-----SQFVQRSLQKRGI 244
++V+G G ++ +L + + R +++ +Q RS + G+
Sbjct: 264 RVVVIGGGDTAMD--CAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGV 321
Query: 245 KILTESKISSV--KQKG---DMVSVQVERKD--------------GSVSSMQAEKLLLSA 285
+ L + + + G + +VE + G+ + A+ ++L+
Sbjct: 322 ERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAI 381
Query: 286 GVQGNIENIGLEKIGVKTSN-GCIIVD-GYGRTNVPGIYAIGDVAGAPMLAHKAEHEGII 343
G +G+ + L + G+K G I VD +T++PG++A GD L A EG
Sbjct: 382 GFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGRE 441
Query: 344 CIEKI 348
+ I
Sbjct: 442 AAKAI 446
>gnl|CDD|33375 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 36.9 bits (85), Expect = 0.012
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG---LGG 40
D+I++G+G AG VAA A G +V I++ G LGG
Sbjct: 6 ADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44
>gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 36.6 bits (84), Expect = 0.013
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE 34
M YD +++GSG AG V A R + G V ++E
Sbjct: 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLE 37
>gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 36.0 bits (82), Expect = 0.022
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40
MS D+++IG G G AA A+ G V ++E GG
Sbjct: 1 MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40
>gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 36.1 bits (83), Expect = 0.024
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGG 40
+++IG G AG AA+ A +GFKV +VE +GG
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161
>gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
biogenesis, outer membrane].
Length = 374
Score = 35.6 bits (82), Expect = 0.028
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVE 34
+D +++G+G +G V A AAQLG +V IVE
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVE 31
>gnl|CDD|30794 COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in
cell division [Cell division and chromosome
partitioning].
Length = 621
Score = 35.1 bits (81), Expect = 0.045
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIV 33
M + YD+I+IG G AG AA+ AA++G K ++
Sbjct: 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33
>gnl|CDD|37966 KOG2755, KOG2755, KOG2755, Oxidoreductase [General function
prediction only].
Length = 334
Score = 35.0 bits (80), Expect = 0.047
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 237 RSLQKRGIKILTESKISSVKQKGDMVSV-QVERKDGSVSSMQAEKLLLSAGVQGNIENIG 295
+ R + L + + + D +SV ++++ + + + + ++ + GV N E
Sbjct: 230 SESENRSLTYL-RNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSE-WA 287
Query: 296 LEKIGVKTSNGCIIVDGYGRTNVPGIYAIGDVAGA 330
+ K+ T +G I VD T++P ++A GDV
Sbjct: 288 MNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCTT 322
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 34.7 bits (80), Expect = 0.050
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVE 34
D++++G+GP+G AA A+ G KVAI+E
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAIIE 47
>gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 501
Score = 34.6 bits (79), Expect = 0.055
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 2 SRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE 34
+ +I+IG+G AG AA + GF V ++E
Sbjct: 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLE 45
Score = 28.4 bits (63), Expect = 4.7
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 180 DALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRI 223
++ + K +IV+G+G G+ + + DV ++E +DR+
Sbjct: 7 ESTPEAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50
>gnl|CDD|32579 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 34.1 bits (78), Expect = 0.077
Identities = 18/55 (32%), Positives = 23/55 (41%)
Query: 301 VKTSNGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVY 355
K + I VD T++ G+Y GD AG A +GI E IA K
Sbjct: 432 TKFYSVRIKVDEDLSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIARKYGAE 486
Score = 27.2 bits (60), Expect = 9.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVE 34
M+ D++++G+GPAG AA + KV I++
Sbjct: 15 MNAALDVVIVGAGPAGLFAAYELSGDARKVPILK 48
>gnl|CDD|35620 KOG0399, KOG0399, KOG0399, Glutamate synthase [Amino acid transport
and metabolism].
Length = 2142
Score = 34.2 bits (78), Expect = 0.082
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 257 QKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGR- 315
+K D Q++ + S ++A+ ++L+ G G E +E++ +KT I+
Sbjct: 2023 EKDDKGRWQMKEINNSEEIIEADLVILAMGFVGP-EKSVIEQLNLKTDPRSNILTPKDSY 2081
Query: 316 -TNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKI 348
T+V ++A GD L A EG ++
Sbjct: 2082 STDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115
Score = 33.8 bits (77), Expect = 0.11
Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSL----------LRS 56
+ +IGSGPAG AA + + G V + E + G L +G IP L L
Sbjct: 1788 VAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG-IPNMKLDKFVVQRRVDLLE 1846
Query: 57 AEILDHIQNAQ---HYGL----NVAGKVEFNIEDIVKRSRDISHRLNRGVEFLM---HKN 106
E + + N + H L + R + R +GV F M KN
Sbjct: 1847 QEGIRFVTNTEIGKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKN 1906
Query: 107 K 107
Sbjct: 1907 T 1907
>gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 34.3 bits (78), Expect = 0.087
Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 37/213 (17%)
Query: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGF-KVAIVEYAGLGGICLNWGCIPTKSLLRSAEI 59
++ D+ +IG+G +G AA Q G I E G + P L +
Sbjct: 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWL 64
Query: 60 LDHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKN 119
L + + A I+D +K + + L + F
Sbjct: 65 LGF--PFLPFRWDEAFAPFAEIKDYIKDYLE-KYGLRFQIRF------------------ 103
Query: 120 PSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGA--RPR--HIEGIEPDSHLI 175
+ + V+ + + + G G A +++ATG P G++ I
Sbjct: 104 NTRVEVADWDEDT--KRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRI 161
Query: 176 -----WTYFDALKPSKTPKSLIVMGSGAIGVEF 203
W + L+ K ++V+G+GA V+
Sbjct: 162 LHSADWPNPEDLR----GKRVLVIGAGASAVDI 190
>gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 309
Score = 33.5 bits (77), Expect = 0.13
Identities = 14/62 (22%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 226 VEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSA 285
V+ + + + + R+ + G++IL ++++ ++++G V+V+ DG + +A+K++ +A
Sbjct: 144 VDPARLLRALARAAEALGVEILEGTEVTGLEREGGGVTVETA--DGEI---RADKVVNAA 198
Query: 286 GV 287
G
Sbjct: 199 GA 200
Score = 33.5 bits (77), Expect = 0.15
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40
D+++IG G G A A+ G V ++E L
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLAS 35
>gnl|CDD|35265 KOG0042, KOG0042, KOG0042, Glycerol-3-phosphate dehydrogenase
[Energy production and conversion].
Length = 680
Score = 32.6 bits (74), Expect = 0.24
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEY 35
+D+++IG G G A+ AA G K A+VE
Sbjct: 68 FDVLIIGGGATGAGCALDAATRGLKTALVEA 98
>gnl|CDD|33187 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 32.3 bits (73), Expect = 0.34
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGG 40
I ++G+G AG AA + G +V + E G+GG
Sbjct: 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38
>gnl|CDD|37353 KOG2142, KOG2142, KOG2142, Molybdenum cofactor sulfurase [Coenzyme
transport and metabolism].
Length = 728
Score = 31.6 bits (71), Expect = 0.48
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 43 LNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAG----KVEFNIEDIVKRSRD 90
LNW ++L S + Q YG V FN+ D+ KR R
Sbjct: 578 LNWLVQSLRNLQHSESSSTTVNLVQIYGPKTKYERGPAVAFNLFDLSKRFRA 629
>gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 31.4 bits (71), Expect = 0.63
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40
+D+I+IG G G A AA G KVA+VE L
Sbjct: 13 FDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLAS 48
>gnl|CDD|37614 KOG2403, KOG2403, KOG2403, Succinate dehydrogenase, flavoprotein
subunit [Energy production and conversion].
Length = 642
Score = 30.7 bits (69), Expect = 0.88
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIV 33
YD +++G+G AG AA A+LG K A++
Sbjct: 56 YDAVVVGAGGAGLRAARGLAELGEKTAVI 84
>gnl|CDD|36584 KOG1370, KOG1370, KOG1370, S-adenosylhomocysteine hydrolase
[Coenzyme transport and metabolism].
Length = 434
Score = 30.3 bits (68), Expect = 1.1
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 337 AEHE--GIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVA 373
AE+E G++ + K G SK PL ++I GC + Q A
Sbjct: 26 AENEMPGLMALRKRYGPSK--PLKGARIAGCLHMTVQTA 62
>gnl|CDD|144912 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 30.0 bits (68), Expect = 1.5
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVE 34
D++++G GPAG + A+ A+ G +V +VE
Sbjct: 2 TDVLIVGGGPAGLMLALLLARAGVRVVLVE 31
>gnl|CDD|147425 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.
Length = 430
Score = 28.9 bits (65), Expect = 3.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 337 AEHE--GIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVA 373
AE+E G++ + + G S+ PL ++I GC + Q A
Sbjct: 21 AENEMPGLMALREEYGPSQ--PLKGARIAGCLHMTVQTA 57
>gnl|CDD|37522 KOG2311, KOG2311, KOG2311, NAD/FAD-utilizing protein possibly
involved in translation [Translation, ribosomal
structure and biogenesis].
Length = 679
Score = 28.8 bits (64), Expect = 3.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIV 33
YD+++IG G AG AA AA+LG + ++
Sbjct: 29 YDVVVIGGGHAGCEAAAAAARLGARTLLL 57
>gnl|CDD|31424 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 28.4 bits (63), Expect = 4.5
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAG-LGGICL 43
D+I++G+G AG AA + G++V I+E +GG L
Sbjct: 9 DVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL 47
>gnl|CDD|30099 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle..
Length = 693
Score = 28.2 bits (63), Expect = 4.5
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 67 QHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDII 111
HY AG V++NI+ +++++D LN V L+ K+ ++
Sbjct: 497 VHY----AGTVDYNIDGWLEKNKD---PLNDNVVGLLKKSSDKLV 534
>gnl|CDD|35427 KOG0206, KOG0206, KOG0206, P-type ATPase [General function
prediction only].
Length = 1151
Score = 28.3 bits (63), Expect = 4.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 401 KAITLGEDSGMIKTIFNNKTG 421
+ L E+ G ++ IF++KTG
Sbjct: 376 RTSNLNEELGQVEYIFSDKTG 396
>gnl|CDD|36452 KOG1238, KOG1238, KOG1238, Glucose dehydrogenase/choline
dehydrogenase/mandelonitrile lyase (GMC oxidoreductase
family) [General function prediction only].
Length = 623
Score = 28.0 bits (62), Expect = 5.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 5 YDIILIGSGPAGYVAAIRAAQL-GFKVAIVEYAG 37
YD I++G G AG V A R ++ + V ++E G
Sbjct: 58 YDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGG 91
>gnl|CDD|36613 KOG1399, KOG1399, KOG1399, Flavin-containing monooxygenase
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 448
Score = 28.1 bits (62), Expect = 5.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVE 34
D+ +IG+GPAG AA + G +V + E
Sbjct: 8 DVAVIGAGPAGLAAARELLREGHEVVVFE 36
>gnl|CDD|35904 KOG0685, KOG0685, KOG0685, Flavin-containing amine oxidase
[Coenzyme transport and metabolism].
Length = 498
Score = 28.0 bits (62), Expect = 5.6
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 7 IILIGSGPAGYVAAIRAAQLGFK-VAIVE 34
I++IG+G AG AA R + GF V I+E
Sbjct: 24 IVIIGAGIAGLAAATRLLENGFIDVLILE 52
>gnl|CDD|37825 KOG2614, KOG2614, KOG2614, Kynurenine 3-monooxygenase and related
flavoprotein monooxygenases [Energy production and
conversion, General function prediction only].
Length = 420
Score = 28.0 bits (62), Expect = 5.9
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA 36
++++G G G A+ + G V ++E
Sbjct: 4 KVVIVGGGIVGLATALALHRKGIDVVVLESR 34
>gnl|CDD|113586 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyses the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 28.1 bits (63), Expect = 6.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 6 DIILIGSGPAGYVAAI---RAAQLGFKVAIVEYAGLGGICLNWGCIP-TKSLLRSAEI 59
I+++G G AG++AA RA + G V +VE +G + + IP ++ R I
Sbjct: 1 KIVIVGGGTAGWMAAAALARALKGGLDVTLVESEEIGTVGVGEATIPSIRTFNRMLGI 58
>gnl|CDD|176889 cd08880, RHO_alpha_C_ahdA1c-like, C-terminal catalytic domain of
the large/alpha subunit (ahdA1c) of a ring-hydroxylating
dioxygenase from Sphingomonas sp. strain P2 and related
proteins. C-terminal catalytic domain of the large
subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate
1-hydroxylase complex from Sphingomonas sp. strain P2,
and related Rieske-type non-heme iron aromatic
ring-hydroxylating oxygenases (RHOs, also known as
aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c
is one of three known isofunctional salicylate
1-hydroxylase complexes in strain P2, involved in
phenanthrene degradation, which catalyze the
monooxygenation of salicylate, the metabolite of
phenanthene degradation, to produce catechol. This
complex prefers salicylate over other substituted
salicylates; the other two salicylate 1-hydroxylases
have different substrate preferences. RHOs utilize
non-heme Fe(II) to catalyze the addition of hydroxyl
groups to the aromatic ring, an initial step in the
oxidative degradation of aromatic compounds. RHOs are
composed of either two or three protein components, and
are comprised of an electron transport chain (ETC) and
an oxygenase. The ETC transfers reducing equivalents
from the electron donor to the oxygenase component,
which in turn transfers electrons to the oxygen
molecules. The oxygenase components are oligomers,
either (alpha)n or (alpha)n(beta)n. The alpha subunits
are the catalytic components and have an N-terminal
domain, which binds a Rieske-like 2Fe-2S cluster, and a
C-terminal domain which binds the non-heme Fe(II). The
Fe(II) is co-ordinated by conserved His and Asp
residues. Other oxygenases belonging to this subgroup
include the alpha subunits of anthranilate
1,2-dioxygenase from Burkholderia cepacia DBO1, a
polycyclic aromatic hydrocarbon dioxygenase from
Cycloclasticus sp. strain A5 (PhnA dioxygenase),
salicylate-5-hydroxylase from Ralstonia sp. U2,
ortho-halobenzoate 1,2-dioxygenase from Pseudomonas
aeruginosa strain JB2, and the terephthalate
1,2-dioxygenase system from Delftia tsuruhatensis strain
T7. This subfamily belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket.
Length = 222
Score = 28.0 bits (63), Expect = 6.6
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 163 RHIEGIEPDSH-LIWTYF 179
RHI PDS L+WTYF
Sbjct: 123 RHIIPKGPDSFELVWTYF 140
>gnl|CDD|30850 COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [Nucleotide
transport and metabolism].
Length = 533
Score = 27.8 bits (62), Expect = 6.8
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 15/51 (29%)
Query: 1 MSRLYDIILI--GSGPAGYVAAIRAAQ-------------LGFKVAIVEYA 36
+ +L D IL+ G G G I A + LG ++A++E+A
Sbjct: 340 LEKLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLAVIEFA 390
>gnl|CDD|31726 COG1537, PelA, Predicted RNA-binding proteins [General function
prediction only].
Length = 352
Score = 27.9 bits (62), Expect = 6.9
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 179 FDALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRS 238
ALK +IV G G +F F + +++ I ++D S +
Sbjct: 183 AKALKEYANLDIIIVAGPGFAKEDFYDFLRERYPELANIVIEDT------STGGRAGINE 236
Query: 239 LQKRGI--KILTESKISSVKQKGDMVSVQVERKDGSV 273
+ KRG KIL+E++I+ + + ++ + D V
Sbjct: 237 VLKRGAVDKILSETRIAEEIELVEEFLERLAKDDDKV 273
>gnl|CDD|39455 KOG4254, KOG4254, KOG4254, Phytoene desaturase [Coenzyme
transport and metabolism].
Length = 561
Score = 27.7 bits (61), Expect = 8.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIVE 34
YD ++IG G G AA A+ G VA++E
Sbjct: 15 YDAVVIGGGHNGLTAAAYLARYGQSVAVLE 44
>gnl|CDD|34627 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 27.3 bits (60), Expect = 8.9
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 68 HYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSK 127
HY AG VE+++E + +++D LN + L+ + + + +TL + E SK
Sbjct: 552 HY----AGDVEYDVEGFLDKNKD---PLNDDLLELLKASTNEFV---STLFDDEENIESK 601
Query: 128 PSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSH-LIWTY 178
P + + K+ L + +T +P +I I+P+ WT+
Sbjct: 602 GRFPTLGSRF---KESLNS----LMSTLNST--QPHYIRCIKPNEEKSPWTF 644
>gnl|CDD|112243 pfam03418, Peptidase_A25, Germination protease.
Length = 355
Score = 27.3 bits (60), Expect = 9.0
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 212 VDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILT-----ESKISSVKQKGDMVSVQV 266
V+ +++ P + SEI F+++ + GIKI E + K++G ++++
Sbjct: 2 VEAKDAAAENQAKPNKQSEIKGFIEKEKDEGGIKIRMVDITEEGAEAIGKKEGRYLTLEA 61
Query: 267 ERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGRTNV 318
+ + S Q E + V N +E + + C+IV G G NV
Sbjct: 62 QGIRENDSEKQEEAM---EAVFAEEFNAFIENLNIPDDASCLIV-GLGNLNV 109
>gnl|CDD|38655 KOG3445, KOG3445, KOG3445, Mitochondrial/chloroplast ribosomal
protein 36a [Translation, ribosomal structure and
biogenesis].
Length = 145
Score = 27.2 bits (60), Expect = 9.7
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 233 QFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKL----LLSAGVQ 288
F RG++ ES++ + ++ V + VE + G ++AE L +
Sbjct: 29 SFCNWGGSSRGMREFLESELPDLARENPGVVIYVEPRRGQHPLLRAEYLNGRERVICVRN 88
Query: 289 GNIENIGLEKIGVKTSNG 306
+ E + + ++ S+G
Sbjct: 89 MSQEEVSKKATLLRDSSG 106
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.316 0.135 0.386
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,524,497
Number of extensions: 292320
Number of successful extensions: 957
Number of sequences better than 10.0: 1
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 91
Length of query: 481
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 383
Effective length of database: 4,146,055
Effective search space: 1587939065
Effective search space used: 1587939065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)