BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (481 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 481 Score = 981 bits (2535), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/481 (100%), Positives = 481/481 (100%) Query: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEIL 60 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEIL Sbjct: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEIL 60 Query: 61 DHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP 120 DHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP Sbjct: 61 DHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP 120 Query: 121 SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFD 180 SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFD Sbjct: 121 SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFD 180 Query: 181 ALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ 240 ALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ Sbjct: 181 ALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ 240 Query: 241 KRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIG 300 KRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIG Sbjct: 241 KRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIG 300 Query: 301 VKTSNGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKS 360 VKTSNGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKS Sbjct: 301 VKTSNGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKS 360 Query: 361 KIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKT 420 KIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKT Sbjct: 361 KIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKT 420 Query: 421 GEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRAIH 480 GEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRAIH Sbjct: 421 GEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRAIH 480 Query: 481 S 481 S Sbjct: 481 S 481 >gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 466 Score = 267 bits (682), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 174/482 (36%), Positives = 270/482 (56%), Gaps = 23/482 (4%) Query: 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDH 62 +YD+ ++G GPAGY AI+AAQL KVAI+E GG CLN GCIP+K+LL ++E+ H Sbjct: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSH 61 Query: 63 I-QNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPS 121 I + A G+N+A +++ ++ + I +G+ FL+ KNK+ G A + + + Sbjct: 62 IAKEAGDLGINIA-SCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120 Query: 122 EITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEG--IEPDSHLIWTYF 179 +I V S E T +AK+I+IATG+ + G I+ D +I + Sbjct: 121 KILVKGSSS---------------EETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSST 165 Query: 180 DALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSL 239 AL S PK+L+V+G+G IG+E S + L V +IE IL D EI+ + + Sbjct: 166 GALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIM 225 Query: 240 QKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKI 299 K+G+ SK+SSVK+ V D +++A+ +L++AG + + +GLE+I Sbjct: 226 SKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEI 285 Query: 300 GVKTSN-GCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLD 358 G+ + GCI + G +T++ IYAIGDV PMLAHKAE EGI E I+G+ ++ Sbjct: 286 GINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKG--HVN 343 Query: 359 KSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNN 418 IP Y +P+VASIG TEE+ + + +VGK FSANG+A ++ G +K + N Sbjct: 344 YGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANE 403 Query: 419 KTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRA 478 K+ V GVH++G E+I ++ M + E+L HPT+SE ++E+ L + + Sbjct: 404 KSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQP 463 Query: 479 IH 480 IH Sbjct: 464 IH 465 >gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 188 bits (477), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/469 (27%), Positives = 232/469 (49%), Gaps = 28/469 (5%) Query: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEIL 60 M YD+++IG+G +G +A AAQLG KVAI E +GG C+ GCIP K + +++ Sbjct: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60 Query: 61 DHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP 120 ++ +++Q +G +V K F+ + ++ RL + V+I K L +P Sbjct: 61 EYFEDSQGFGWSVDHK-SFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSP 119 Query: 121 SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFD 180 + ++ ++ T +++I+++TG P ++ S L T + Sbjct: 120 HSVYIANLNR-----------------TITSRYIVVSTGGSPNRMDF--KGSDLCITSDE 160 Query: 181 ALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ 240 P+S +++G G I VEF+ SL +L+ + IL DS+I Q + + Sbjct: 161 IFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMI 220 Query: 241 KRGIKILTESKISS-VKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKI 299 RG+++ I S V + G + S+ K G + ++ ++++L+ G IGLEK+ Sbjct: 221 SRGMQVFHNDTIESVVSESGQLKSI---LKSGKI--VKTDQVILAVGRTPRTTGIGLEKV 275 Query: 300 GVKTS-NGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLD 358 GVK NG II D Y RTNV I+++GD++G L A H +E + + P D Sbjct: 276 GVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIP-D 334 Query: 359 KSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNN 418 +P + P++AS+GLTEE+A + + + K F ++ + ++K I + Sbjct: 335 YDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHA 394 Query: 419 KTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETM 467 +VLGVH++G E +E+IQ + + +++ + HPT SE + Sbjct: 395 DNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443 >gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 24/34 (70%) Query: 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40 I++IGSGPAGY AAI AA+ K I+ + LGG Sbjct: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41 Score = 27.3 bits (59), Expect = 0.57, Method: Compositional matrix adjust. Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 268 RKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGRTNVPGIYAIGDV 327 +K+G+ + + ++ G + N + I ++ + +N + T++PGI+A GDV Sbjct: 229 KKEGNFFERNVDGIFIAIGYKPNTK-IFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDV 287 Query: 328 A 328 A Sbjct: 288 A 288 >gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/29 (62%), Positives = 23/29 (79%) Query: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIV 33 +D+I+IGSG AG VAAI AA+ GF A+V Sbjct: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALV 32 >gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 26.9 bits (58), Expect = 0.68, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY--AGLGGICLN--WGCIPTKSLLRS 56 ++R YD+I+IG G AG AA AA+LG A++ + + +G + N G + L+R Sbjct: 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61 Query: 57 AEILD 61 + LD Sbjct: 62 IDALD 66 >gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62] Length = 192 Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 27/44 (61%) Query: 251 KISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENI 294 +IS +++K ++ + VER DG+++ E+L + ++ENI Sbjct: 42 QISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 24.3 bits (51), Expect = 4.8, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 2/36 (5%) Query: 438 QGFSIAMSLETTEEELMHTVFPHPTISETMKESILD 473 +GF A+++ +T+++LM V P + +T+KE +D Sbjct: 131 EGF--AVTIISTDKDLMQLVSPTTCLYDTVKEEKID 164 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.135 0.386 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 303,419 Number of Sequences: 1233 Number of extensions: 12873 Number of successful extensions: 58 Number of sequences better than 100.0: 15 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 17 length of query: 481 length of database: 328,796 effective HSP length: 77 effective length of query: 404 effective length of database: 233,855 effective search space: 94477420 effective search space used: 94477420 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 40 (20.0 bits)