BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase
[Candidatus Liberibacter asiaticus str. psy62]
         (481 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 481

 Score =  981 bits (2535), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/481 (100%), Positives = 481/481 (100%)

Query: 1   MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEIL 60
           MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEIL
Sbjct: 1   MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEIL 60

Query: 61  DHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP 120
           DHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP
Sbjct: 61  DHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP 120

Query: 121 SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFD 180
           SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFD
Sbjct: 121 SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFD 180

Query: 181 ALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ 240
           ALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ
Sbjct: 181 ALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ 240

Query: 241 KRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIG 300
           KRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIG
Sbjct: 241 KRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIG 300

Query: 301 VKTSNGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKS 360
           VKTSNGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKS
Sbjct: 301 VKTSNGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLDKS 360

Query: 361 KIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKT 420
           KIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKT
Sbjct: 361 KIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNNKT 420

Query: 421 GEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRAIH 480
           GEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRAIH
Sbjct: 421 GEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRAIH 480

Query: 481 S 481
           S
Sbjct: 481 S 481


>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 466

 Score =  267 bits (682), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 174/482 (36%), Positives = 270/482 (56%), Gaps = 23/482 (4%)

Query: 4   LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDH 62
           +YD+ ++G GPAGY  AI+AAQL  KVAI+E     GG CLN GCIP+K+LL ++E+  H
Sbjct: 2   VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSH 61

Query: 63  I-QNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPS 121
           I + A   G+N+A     +++ ++   + I     +G+ FL+ KNK+    G A + + +
Sbjct: 62  IAKEAGDLGINIA-SCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120

Query: 122 EITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEG--IEPDSHLIWTYF 179
           +I V   S                E T +AK+I+IATG+    + G  I+ D  +I +  
Sbjct: 121 KILVKGSSS---------------EETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSST 165

Query: 180 DALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSL 239
            AL  S  PK+L+V+G+G IG+E  S +  L   V +IE    IL   D EI+    + +
Sbjct: 166 GALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIM 225

Query: 240 QKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKI 299
            K+G+     SK+SSVK+      V     D    +++A+ +L++AG +   + +GLE+I
Sbjct: 226 SKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEI 285

Query: 300 GVKTSN-GCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLD 358
           G+   + GCI + G  +T++  IYAIGDV   PMLAHKAE EGI   E I+G+     ++
Sbjct: 286 GINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKG--HVN 343

Query: 359 KSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNN 418
              IP   Y +P+VASIG TEE+ + +    +VGK  FSANG+A ++    G +K + N 
Sbjct: 344 YGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANE 403

Query: 419 KTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRA 478
           K+  V GVH++G    E+I   ++ M    + E+L      HPT+SE ++E+ L  + + 
Sbjct: 404 KSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQP 463

Query: 479 IH 480
           IH
Sbjct: 464 IH 465


>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 461

 Score =  188 bits (477), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/469 (27%), Positives = 232/469 (49%), Gaps = 28/469 (5%)

Query: 1   MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEIL 60
           M   YD+++IG+G +G  +A  AAQLG KVAI E   +GG C+  GCIP K +  +++  
Sbjct: 1   MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60

Query: 61  DHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP 120
           ++ +++Q +G +V  K  F+ + ++        RL       +    V+I   K  L +P
Sbjct: 61  EYFEDSQGFGWSVDHK-SFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSP 119

Query: 121 SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFD 180
             + ++  ++                 T  +++I+++TG  P  ++     S L  T  +
Sbjct: 120 HSVYIANLNR-----------------TITSRYIVVSTGGSPNRMDF--KGSDLCITSDE 160

Query: 181 ALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ 240
                  P+S +++G G I VEF+    SL    +L+   + IL   DS+I Q +   + 
Sbjct: 161 IFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMI 220

Query: 241 KRGIKILTESKISS-VKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKI 299
            RG+++     I S V + G + S+    K G +  ++ ++++L+ G       IGLEK+
Sbjct: 221 SRGMQVFHNDTIESVVSESGQLKSI---LKSGKI--VKTDQVILAVGRTPRTTGIGLEKV 275

Query: 300 GVKTS-NGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLD 358
           GVK   NG II D Y RTNV  I+++GD++G   L   A H     +E +   +   P D
Sbjct: 276 GVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIP-D 334

Query: 359 KSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNN 418
              +P   +  P++AS+GLTEE+A  +   + + K  F      ++   +  ++K I + 
Sbjct: 335 YDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHA 394

Query: 419 KTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETM 467
              +VLGVH++G E +E+IQ   + +     +++    +  HPT SE +
Sbjct: 395 DNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443


>gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 321

 Score = 38.1 bits (87), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 24/34 (70%)

Query: 7  IILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40
          I++IGSGPAGY AAI AA+   K  I+  + LGG
Sbjct: 8  ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41



 Score = 27.3 bits (59), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 268 RKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGRTNVPGIYAIGDV 327
           +K+G+      + + ++ G + N + I   ++ +  +N    +     T++PGI+A GDV
Sbjct: 229 KKEGNFFERNVDGIFIAIGYKPNTK-IFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDV 287

Query: 328 A 328
           A
Sbjct: 288 A 288


>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 384

 Score = 36.2 bits (82), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 5  YDIILIGSGPAGYVAAIRAAQLGFKVAIV 33
          +D+I+IGSG AG VAAI AA+ GF  A+V
Sbjct: 4  FDVIIIGSGLAGSVAAIGAAKKGFLTALV 32


>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 26.9 bits (58), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 1  MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY--AGLGGICLN--WGCIPTKSLLRS 56
          ++R YD+I+IG G AG  AA  AA+LG   A++ +  + +G +  N   G +    L+R 
Sbjct: 2  INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61

Query: 57 AEILD 61
           + LD
Sbjct: 62 IDALD 66


>gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 192

 Score = 25.0 bits (53), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 27/44 (61%)

Query: 251 KISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENI 294
           +IS +++K  ++ + VER DG+++    E+L  +     ++ENI
Sbjct: 42  QISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENI 85


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 24.3 bits (51), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 438 QGFSIAMSLETTEEELMHTVFPHPTISETMKESILD 473
           +GF  A+++ +T+++LM  V P   + +T+KE  +D
Sbjct: 131 EGF--AVTIISTDKDLMQLVSPTTCLYDTVKEEKID 164


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.135    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,419
Number of Sequences: 1233
Number of extensions: 12873
Number of successful extensions: 58
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 17
length of query: 481
length of database: 328,796
effective HSP length: 77
effective length of query: 404
effective length of database: 233,855
effective search space: 94477420
effective search space used: 94477420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)