HHsearch alignment for GI: 254780676 and conserved domain: PRK05481
>PRK05481 lipoyl synthase; Provisional.
Probab=100.00 E-value=0 Score=1000.37 Aligned_cols=283 Identities=64% Similarity=1.036 Sum_probs=278.4
Q ss_pred CCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 88898824500179986689999999974982365257887876750897269998665223535223446789988882
Q gi|254780676|r 36 EKMQKPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDP 115 (329)
Q Consensus 36 ~~~~kP~Wlk~~~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P~~~D~ 115 (329)
T Consensus 2 ~~~rkP~Wlkvk~p~~~~~~~~k~~l~~~~L~TVCeeA~CPNi~ECw~~gTATFMIlG~~CTR~C~FC~V~tG~P~~~D~ 81 (289)
T PRK05481 2 EILRKPDWLRVKLPTGERYTETKALLRENGLHTVCEEASCPNIGECWSHGTATFMILGDICTRRCPFCDVATGRPLPLDP 81 (289)
T ss_pred CCCCCCHHEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98879653176389984199999999977992555788999738875998506776578765788774078899898870
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHHHHHHCCCHHHHH
Q ss_conf 3579999999970775189850544534532589999999999853358689981546234468-999874107023320
Q gi|254780676|r 116 QEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPH-ALEKVVSAKPDVFNH 194 (329)
Q Consensus 116 ~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~IEvLiPDf~G~~~-al~~v~~A~pdV~nH 194 (329)
T Consensus 82 ~EP~~vA~av~~m~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~iEvLiPDF~G~~~~~l~~v~~a~PdV~nH 161 (289)
T PRK05481 82 DEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELSPGTTIEVLIPDFRGRKDAALEIVVAAPPDVFNH 161 (289)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCHHHHHC
T ss_conf 30799999999828976999634166665655499999999998559997799707211469999999998567177643
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCC
Q ss_conf 13830002756389703589999999999708916701404887642068899999999966993997502227861007
Q gi|254780676|r 195 NLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHH 274 (329)
Q Consensus 195 NiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvGLGEt~eEi~e~l~DLr~~gvdilTiGQYL~Ps~~h~ 274 (329)
T Consensus 162 NiETV~rL~~~VRp~a~Y~rSL~vL~~~k~~~p~~~TKSgiMvGLGEt~eEv~~~~~DL~~~gvdilTiGQYL~Ps~~hl 241 (289)
T PRK05481 162 NLETVPRLYKRVRPGADYERSLELLKRAKELDPGIPTKSGLMVGLGETDEEVLEVMDDLRAHGVDILTIGQYLQPSRKHL 241 (289)
T ss_pred CHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 51310443623388233899999999999748998241356775578899999999999981998998340358886668
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH
Q ss_conf 80002384699999999997496243404830010318999999
Q gi|254780676|r 275 KVESFVTPQDFKSYETIAYSKGFLMVSASPLTRSSYHAGDDFLR 318 (329)
Q Consensus 275 pV~ryv~P~eF~~~~~~a~~~Gf~~V~SgPlVRSSY~A~e~~~~ 318 (329)
T Consensus 242 pV~ryv~P~eF~~~~~~a~~~GF~~V~SgPlVRSSY~A~~~~~~ 285 (289)
T PRK05481 242 PVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHADEQFKG 285 (289)
T ss_pred CCEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 84335698999999999997599679823740020426899866