HHsearch alignment for GI: 254780676 and conserved domain: TIGR01125
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=97.22 E-value=0.031 Score=37.42 Aligned_cols=176 Identities=19% Similarity=0.333 Sum_probs=131.3
Q ss_pred EEEECCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCEEEE----ECCCCCCCC-----CCHH---HHHHHH
Q ss_conf 9986652235352234467--8998888235799999999707751898----505445345-----3258---999999
Q gi|254780676|r 89 FMILGAICTRACTFCNVAT--GKPQPLDPQEPENISWAVRSMKLSHVVI----TSVDRDDLD-----DGGA---QHFAEV 154 (329)
Q Consensus 89 FMilG~~CTR~C~FC~V~~--G~P~~~D~~EP~rvA~av~~l~Lk~vVi----TSV~RDDL~-----DgGA---~hfa~~ 154 (329)
T Consensus 167 YlKvaEGC~~~CaFCiIP~~rG~~rSR~ie~i~~Ea~~L~~~GvKEiiliaQDTt~YG~DL~~R~~~~~~e~v~~~L~~L 246 (475)
T TIGR01125 167 YLKVAEGCNRRCAFCIIPSLRGKLRSRPIEEILKEAKRLVDQGVKEIILIAQDTTAYGVDLYTRESEFDGEQVKSKLVEL 246 (475)
T ss_pred EEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 68700577898652136233677677688889999999984398389999640347764111105522401457899999
Q ss_pred HHHHHHHCC--CCEEEEECCCCCCCHHHHHHHHHCCCHHH-------HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 999985335--86899815462344689998741070233-------201383000275638970358999999999970
Q gi|254780676|r 155 ISAIRESAP--STTIEVLTPDFLRKPHALEKVVSAKPDVF-------NHNLETVASNYLMVRPGARYFHSLRLLQRVKEL 225 (329)
Q Consensus 155 I~~Ir~~~P--~~~IEvLiPDf~G~~~al~~v~~A~pdV~-------nHNiETV~rLy~~VRp~a~Y~rSL~vL~~aK~~ 225 (329)
T Consensus 247 l~~L~k~~G~~WiR~~YlYP~--~~~~~vI~~m~~~~KvLPYlDiPLQH---~sd~ILK~M~R~~~~~~~~~~i~~~R~~ 321 (475)
T TIGR01125 247 LEELGKLGGIYWIRLLYLYPD--ELTDDVIDLMAEGPKVLPYLDIPLQH---ASDRILKLMRRPGSGEEQLDLIERLREK 321 (475)
T ss_pred HHHHHHCCCCCEEEEEEECCC--CCCHHHHHHHHCCCCCCCEECCCCCC---CCHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 997400589622788876088--88667889986389805122543123---8737874278996388999999999975
Q ss_pred CCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCCC
Q ss_conf 89167014048876-420688999999999669939975022278
Q gi|254780676|r 226 DPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQP 269 (329)
Q Consensus 226 ~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~P 269 (329)
T Consensus 322 ~P~~vlRttfIVGFPGETEEdF~eL~~Fv~e~~~D~lG~F~YS~e 366 (475)
T TIGR01125 322 VPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGVFTYSPE 366 (475)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 566177224688688998788999999985202150000207832