HHsearch alignment for GI: 254780676 and conserved domain: TIGR01579

>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=97.50  E-value=0.013  Score=40.07  Aligned_cols=212  Identities=17%  Similarity=0.329  Sum_probs=139.2

Q ss_pred             HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHH---CCCEEEEECCC----CCCCCCCH
Q ss_conf             767508972699986652235352234467899---888823579999999970---77518985054----45345325
Q gi|254780676|r   78 IGECWNKNHATFMILGAICTRACTFCNVATGKP---QPLDPQEPENISWAVRSM---KLSHVVITSVD----RDDLDDGG  147 (329)
Q Consensus        78 i~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P---~~~D~~EP~rvA~av~~l---~Lk~vViTSV~----RDDL~DgG  147 (329)
T Consensus       202 ~~DAf~~~~RAFvKVQdGCn~~CsyC~IP~~RGt~~RS~~~---e~~~~~v~~Lv~~gy~EvVLTGvnlg~Yg~d~~~~g  278 (492)
T TIGR01579       202 AVDAFEERTRAFVKVQDGCNKFCSYCIIPFARGTRSRSVPL---EKILEQVKELVAKGYKEVVLTGVNLGSYGDDLGENG  278 (492)
T ss_pred             EEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCC
T ss_conf             23100278862578875889884410140337897641667---899999999973775599984001444568887667


Q ss_pred             HHHHHHHHHHHHHHCCCC-EEEE--ECCCCCCCHHHHHHHHHCCCHHHHHCC----CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             899999999998533586-8998--154623446899987410702332013----830002756389703589999999
Q gi|254780676|r  148 AQHFAEVISAIRESAPST-TIEV--LTPDFLRKPHALEKVVSAKPDVFNHNL----ETVASNYLMVRPGARYFHSLRLLQ  220 (329)
Q Consensus       148 A~hfa~~I~~Ir~~~P~~-~IEv--LiPDf~G~~~al~~v~~A~pdV~nHNi----ETV~rLy~~VRp~a~Y~rSL~vL~  220 (329)
T Consensus       279 -~~L~~Ll~~i~~q~~g~~RiRlSS~~p~--~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~  355 (492)
T TIGR01579       279 -SSLAKLLEQILKQIPGIERIRLSSIDPE--DIDEELLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQ  355 (492)
T ss_pred             -CCHHHHHHHHHHHCCCCEEEEECCCCHH--HHCHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf             -6089999999864688346763257765--5048999997347641632000022277379842487887689999999


Q ss_pred             HHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CCCCCCC------CCCCCCHHHHHHHHHHH
Q ss_conf             9997089167014048876-42068899999999966993997502227-8610078------00023846999999999
Q gi|254780676|r  221 RVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PTRKHHK------VESFVTPQDFKSYETIA  292 (329)
Q Consensus       221 ~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps~~h~p------V~ryv~P~eF~~~~~~a  292 (329)
T Consensus       356 ~lr~~~p~~~~gtD~IVGFP~E~eedFq~t~~~~~~~~~~~~HiFpyS~R~~T~A~~m~~rf~v~~~~~KeR~~~L~~~~  435 (492)
T TIGR01579       356 KLRSVRPDYAFGTDVIVGFPGESEEDFQETLRIVKEIEFSGLHIFPYSARPGTPASAMDDRFKVPETIKKERVKRLKELA  435 (492)
T ss_pred             HHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99850776303760374088898899999999985266021335426884328120478744276115889999999998


Q ss_pred             HHC
Q ss_conf             974
Q gi|254780676|r  293 YSK  295 (329)
Q Consensus       293 ~~~  295 (329)
T Consensus       436 ~~~  438 (492)
T TIGR01579       436 EKV  438 (492)
T ss_pred             HHH
T ss_conf             888