HHsearch alignment for GI: 254780676 and conserved domain: TIGR01579
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=97.50 E-value=0.013 Score=40.07 Aligned_cols=212 Identities=17% Similarity=0.329 Sum_probs=139.2
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHH---CCCEEEEECCC----CCCCCCCH
Q ss_conf 767508972699986652235352234467899---888823579999999970---77518985054----45345325
Q gi|254780676|r 78 IGECWNKNHATFMILGAICTRACTFCNVATGKP---QPLDPQEPENISWAVRSM---KLSHVVITSVD----RDDLDDGG 147 (329)
Q Consensus 78 i~ECw~~gtATFMilG~~CTR~C~FC~V~~G~P---~~~D~~EP~rvA~av~~l---~Lk~vViTSV~----RDDL~DgG 147 (329)
T Consensus 202 ~~DAf~~~~RAFvKVQdGCn~~CsyC~IP~~RGt~~RS~~~---e~~~~~v~~Lv~~gy~EvVLTGvnlg~Yg~d~~~~g 278 (492)
T TIGR01579 202 AVDAFEERTRAFVKVQDGCNKFCSYCIIPFARGTRSRSVPL---EKILEQVKELVAKGYKEVVLTGVNLGSYGDDLGENG 278 (492)
T ss_pred EEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCC
T ss_conf 23100278862578875889884410140337897641667---899999999973775599984001444568887667
Q ss_pred HHHHHHHHHHHHHHCCCC-EEEE--ECCCCCCCHHHHHHHHHCCCHHHHHCC----CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 899999999998533586-8998--154623446899987410702332013----830002756389703589999999
Q gi|254780676|r 148 AQHFAEVISAIRESAPST-TIEV--LTPDFLRKPHALEKVVSAKPDVFNHNL----ETVASNYLMVRPGARYFHSLRLLQ 220 (329)
Q Consensus 148 A~hfa~~I~~Ir~~~P~~-~IEv--LiPDf~G~~~al~~v~~A~pdV~nHNi----ETV~rLy~~VRp~a~Y~rSL~vL~ 220 (329)
T Consensus 279 -~~L~~Ll~~i~~q~~g~~RiRlSS~~p~--~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~ 355 (492)
T TIGR01579 279 -SSLAKLLEQILKQIPGIERIRLSSIDPE--DIDEELLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQ 355 (492)
T ss_pred -CCHHHHHHHHHHHCCCCEEEEECCCCHH--HHCHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf -6089999999864688346763257765--5048999997347641632000022277379842487887689999999
Q ss_pred HHHHCCCEEEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CCCCCCC------CCCCCCHHHHHHHHHHH
Q ss_conf 9997089167014048876-42068899999999966993997502227-8610078------00023846999999999
Q gi|254780676|r 221 RVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PTRKHHK------VESFVTPQDFKSYETIA 292 (329)
Q Consensus 221 ~aK~~~~~i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps~~h~p------V~ryv~P~eF~~~~~~a 292 (329)
T Consensus 356 ~lr~~~p~~~~gtD~IVGFP~E~eedFq~t~~~~~~~~~~~~HiFpyS~R~~T~A~~m~~rf~v~~~~~KeR~~~L~~~~ 435 (492)
T TIGR01579 356 KLRSVRPDYAFGTDVIVGFPGESEEDFQETLRIVKEIEFSGLHIFPYSARPGTPASAMDDRFKVPETIKKERVKRLKELA 435 (492)
T ss_pred HHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99850776303760374088898899999999985266021335426884328120478744276115889999999998
Q ss_pred HHC
Q ss_conf 974
Q gi|254780676|r 293 YSK 295 (329)
Q Consensus 293 ~~~ 295 (329)
T Consensus 436 ~~~ 438 (492)
T TIGR01579 436 EKV 438 (492)
T ss_pred HHH
T ss_conf 888