HHsearch alignment for GI: 254780676 and conserved domain: TIGR03471

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=98.67  E-value=3.8e-06  Score=65.01  Aligned_cols=229  Identities=15%  Similarity=0.199  Sum_probs=156.3

Q ss_pred             CEEEEEECCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHH-----CCCEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf             2699986652235352234467---899888823579999999970-----77518985054453453258999999999
Q gi|254780676|r   86 HATFMILGAICTRACTFCNVAT---GKPQPLDPQEPENISWAVRSM-----KLSHVVITSVDRDDLDDGGAQHFAEVISA  157 (329)
Q Consensus        86 tATFMilG~~CTR~C~FC~V~~---G~P~~~D~~EP~rvA~av~~l-----~Lk~vViTSV~RDDL~DgGA~hfa~~I~~  157 (329)
T Consensus       196 p~~~i~TSRGCP~~C~FC~~p~~~~Gr--~~R~RSpe~VvdEIe~l~~~y~gv~~~~f----~DD~Ft~~~~r~~eic~~  269 (472)
T TIGR03471       196 PYISLYTGRGCPSKCTFCLWPQTVGGH--RYRTRSAESVIEEVKYALENFPEVREFFF----DDDTFTDDKPRAEEIARK  269 (472)
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCCCEEEE----ECCCCCCCHHHHHHHHHH
T ss_conf             614764179988779687882102688--66215999999999999986689758999----477667899999999999


Q ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf             985335868998154623446899987410702332013830-0027563897035899999999997089167014048
Q gi|254780676|r  158 IRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIM  236 (329)
Q Consensus       158 Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlM  236 (329)
T Consensus       270 i~~l~i~W~~~~Rv-~--~d~E~l~~mk~AGc~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~G--I~v~~~FI  344 (472)
T TIGR03471       270 LGPLGVTWSCNARA-N--VDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLG--IKVHGTFI  344 (472)
T ss_pred             HHHCCCEEEEEEEC-C--CCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCC--CEEEEEEE
T ss_conf             98769827876303-4--8999999999839848998037589999998538998999999999887579--87999998


Q ss_pred             EE-EEECHHHHHHHHHHHHHCCCCEEECCHHCC-C-C-----------------------CCCCCCCC--CCCHHHHHHH
Q ss_conf             87-642068899999999966993997502227-8-6-----------------------10078000--2384699999
Q gi|254780676|r  237 LG-LGETRNEILQLMDDLRTADVDFLTMGQYLQ-P-T-----------------------RKHHKVES--FVTPQDFKSY  288 (329)
Q Consensus       237 vG-LGEt~eEi~e~l~DLr~~gvdilTiGQYL~-P-s-----------------------~~h~pV~r--yv~P~eF~~~  288 (329)
T Consensus       345 iG~PgET~Eti~~Ti~fa~~l~~d~~~~si~tPyPGT~ly~~~~e~g~i~~~~~~~~d~~~~~~~~~~~~~ls~~ei~~~  424 (472)
T TIGR03471       345 LGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQNGWITQDSAAMVDDTGHQMAAISYPHLSREEIFDG  424 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCEECCCCCCEECCCCCCCCCHHHHHHH
T ss_conf             77999988999999999997598908998725889969999999839855664123157773314458999899999999


Q ss_pred             HHHHHHCCC-----------CEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             999997496-----------2434048300103189999999999854
Q gi|254780676|r  289 ETIAYSKGF-----------LMVSASPLTRSSYHAGDDFLRLKNNRRQ  325 (329)
Q Consensus       289 ~~~a~~~Gf-----------~~V~SgPlVRSSY~A~e~~~~~~~~~~~  325 (329)
T Consensus       425 ~~~~y~~fy~rP~~i~~~~~~~~~~~~~~kr~~~~g~~~~~~~~~~~~  472 (472)
T TIGR03471       425 VERFYKRFYFRPKKIGRIVREMLFDWDMMKRRLREGVEFFQFLRKRKK  472 (472)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999981889999999999857989999999959999999986159