HHsearch alignment for GI: 254780676 and conserved domain: TIGR03471
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=98.67 E-value=3.8e-06 Score=65.01 Aligned_cols=229 Identities=15% Similarity=0.199 Sum_probs=156.3
Q ss_pred CEEEEEECCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHH-----CCCEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2699986652235352234467---899888823579999999970-----77518985054453453258999999999
Q gi|254780676|r 86 HATFMILGAICTRACTFCNVAT---GKPQPLDPQEPENISWAVRSM-----KLSHVVITSVDRDDLDDGGAQHFAEVISA 157 (329)
Q Consensus 86 tATFMilG~~CTR~C~FC~V~~---G~P~~~D~~EP~rvA~av~~l-----~Lk~vViTSV~RDDL~DgGA~hfa~~I~~ 157 (329)
T Consensus 196 p~~~i~TSRGCP~~C~FC~~p~~~~Gr--~~R~RSpe~VvdEIe~l~~~y~gv~~~~f----~DD~Ft~~~~r~~eic~~ 269 (472)
T TIGR03471 196 PYISLYTGRGCPSKCTFCLWPQTVGGH--RYRTRSAESVIEEVKYALENFPEVREFFF----DDDTFTDDKPRAEEIARK 269 (472)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCCCEEEE----ECCCCCCCHHHHHHHHHH
T ss_conf 614764179988779687882102688--66215999999999999986689758999----477667899999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf 985335868998154623446899987410702332013830-0027563897035899999999997089167014048
Q gi|254780676|r 158 IRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIM 236 (329)
Q Consensus 158 Ir~~~P~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlM 236 (329)
T Consensus 270 i~~l~i~W~~~~Rv-~--~d~E~l~~mk~AGc~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~G--I~v~~~FI 344 (472)
T TIGR03471 270 LGPLGVTWSCNARA-N--VDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLG--IKVHGTFI 344 (472)
T ss_pred HHHCCCEEEEEEEC-C--CCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCC--CEEEEEEE
T ss_conf 98769827876303-4--8999999999839848998037589999998538998999999999887579--87999998
Q ss_pred EE-EEECHHHHHHHHHHHHHCCCCEEECCHHCC-C-C-----------------------CCCCCCCC--CCCHHHHHHH
Q ss_conf 87-642068899999999966993997502227-8-6-----------------------10078000--2384699999
Q gi|254780676|r 237 LG-LGETRNEILQLMDDLRTADVDFLTMGQYLQ-P-T-----------------------RKHHKVES--FVTPQDFKSY 288 (329)
Q Consensus 237 vG-LGEt~eEi~e~l~DLr~~gvdilTiGQYL~-P-s-----------------------~~h~pV~r--yv~P~eF~~~ 288 (329)
T Consensus 345 iG~PgET~Eti~~Ti~fa~~l~~d~~~~si~tPyPGT~ly~~~~e~g~i~~~~~~~~d~~~~~~~~~~~~~ls~~ei~~~ 424 (472)
T TIGR03471 345 LGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQNGWITQDSAAMVDDTGHQMAAISYPHLSREEIFDG 424 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCEECCCCCCEECCCCCCCCCHHHHHHH
T ss_conf 77999988999999999997598908998725889969999999839855664123157773314458999899999999
Q ss_pred HHHHHHCCC-----------CEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999997496-----------2434048300103189999999999854
Q gi|254780676|r 289 ETIAYSKGF-----------LMVSASPLTRSSYHAGDDFLRLKNNRRQ 325 (329)
Q Consensus 289 ~~~a~~~Gf-----------~~V~SgPlVRSSY~A~e~~~~~~~~~~~ 325 (329)
T Consensus 425 ~~~~y~~fy~rP~~i~~~~~~~~~~~~~~kr~~~~g~~~~~~~~~~~~ 472 (472)
T TIGR03471 425 VERFYKRFYFRPKKIGRIVREMLFDWDMMKRRLREGVEFFQFLRKRKK 472 (472)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999981889999999999857989999999959999999986159