HHsearch alignment for GI: 254780676 and conserved domain: smart00729
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.53 E-value=1.6e-12 Score=109.97 Aligned_cols=189 Identities=17% Similarity=0.248 Sum_probs=132.0
Q ss_pred EEEEECCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCEEEEECC--CCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9998665223535223446789--98888235799999999707751898505--4453453258999999999985335
Q gi|254780676|r 88 TFMILGAICTRACTFCNVATGK--PQPLDPQEPENISWAVRSMKLSHVVITSV--DRDDLDDGGAQHFAEVISAIRESAP 163 (329)
Q Consensus 88 TFMilG~~CTR~C~FC~V~~G~--P~~~D~~EP~rvA~av~~l~Lk~vViTSV--~RDDL~DgGA~hfa~~I~~Ir~~~P 163 (329)
T Consensus 3 ~~~~~sRGC~~~C~fC~~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 82 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILG 82 (216)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999878198484298175889645759999999999999708976530011002468988899999999999998514
Q ss_pred C---CEEEEEC-CCCCCCHHHHHHHHHCCCHHHHHCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEE
Q ss_conf 8---6899815-462344689998741070233201383-0002756389703589999999999708916701404887
Q gi|254780676|r 164 S---TTIEVLT-PDFLRKPHALEKVVSAKPDVFNHNLET-VASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLG 238 (329)
Q Consensus 164 ~---~~IEvLi-PDf~G~~~al~~v~~A~pdV~nHNiET-V~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG 238 (329)
T Consensus 83 ~~~~~~~~~~~~~~~-~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~-~~~~~~~i~G 160 (216)
T smart00729 83 LADDVEITIETRPGT-LTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGP-IKVSTDLIVG 160 (216)
T ss_pred CCCCEEEEEECCCCC-CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CEEEEEEEEC
T ss_conf 356269999706021-58999999998499866667355078999871799999999999999998589-3687757867
Q ss_pred E-EECHHHHHHHHHHHHHCCCCEEECCHHCC-C-CCCCCCCCC
Q ss_conf 6-42068899999999966993997502227-8-610078000
Q gi|254780676|r 239 L-GETRNEILQLMDDLRTADVDFLTMGQYLQ-P-TRKHHKVES 278 (329)
Q Consensus 239 L-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-P-s~~h~pV~r 278 (329)
T Consensus 161 lP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~~~~~~ 203 (216)
T smart00729 161 LPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLYKR 203 (216)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHHHCCCC
T ss_conf 9999999999999999946919899874875699846650162