HHsearch alignment for GI: 254780676 and conserved domain: smart00729

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.53  E-value=1.6e-12  Score=109.97  Aligned_cols=189  Identities=17%  Similarity=0.248  Sum_probs=132.0

Q ss_pred             EEEEECCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCEEEEECC--CCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             9998665223535223446789--98888235799999999707751898505--4453453258999999999985335
Q gi|254780676|r   88 TFMILGAICTRACTFCNVATGK--PQPLDPQEPENISWAVRSMKLSHVVITSV--DRDDLDDGGAQHFAEVISAIRESAP  163 (329)
Q Consensus        88 TFMilG~~CTR~C~FC~V~~G~--P~~~D~~EP~rvA~av~~l~Lk~vViTSV--~RDDL~DgGA~hfa~~I~~Ir~~~P  163 (329)
T Consensus         3 ~~~~~sRGC~~~C~fC~~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   82 (216)
T smart00729        3 ALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILG   82 (216)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99999878198484298175889645759999999999999708976530011002468988899999999999998514


Q ss_pred             C---CEEEEEC-CCCCCCHHHHHHHHHCCCHHHHHCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEE
Q ss_conf             8---6899815-462344689998741070233201383-0002756389703589999999999708916701404887
Q gi|254780676|r  164 S---TTIEVLT-PDFLRKPHALEKVVSAKPDVFNHNLET-VASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLG  238 (329)
Q Consensus       164 ~---~~IEvLi-PDf~G~~~al~~v~~A~pdV~nHNiET-V~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG  238 (329)
T Consensus        83 ~~~~~~~~~~~~~~~-~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~-~~~~~~~i~G  160 (216)
T smart00729       83 LADDVEITIETRPGT-LTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGP-IKVSTDLIVG  160 (216)
T ss_pred             CCCCEEEEEECCCCC-CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CEEEEEEEEC
T ss_conf             356269999706021-58999999998499866667355078999871799999999999999998589-3687757867


Q ss_pred             E-EECHHHHHHHHHHHHHCCCCEEECCHHCC-C-CCCCCCCCC
Q ss_conf             6-42068899999999966993997502227-8-610078000
Q gi|254780676|r  239 L-GETRNEILQLMDDLRTADVDFLTMGQYLQ-P-TRKHHKVES  278 (329)
Q Consensus       239 L-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-P-s~~h~pV~r  278 (329)
T Consensus       161 lP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~~~~~~  203 (216)
T smart00729      161 LPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLYKR  203 (216)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHHHCCCC
T ss_conf             9999999999999999946919899874875699846650162