HHsearch alignment of GI: 254780676 and MMDB domain: 1ydo_A_
>1ydo_A (A:) HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.71A {Bacillus subtilis subsp}
Probab=93.50 E-value=0.24 Score=30.68 Aligned_cols=154 Identities=8% Similarity=-0.024 Sum_probs=102.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHH-HHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 234467899888823579999999970775189850544534532589999999-9998533586899815462344689
Q gi|254780676|r 102 FCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVI-SAIRESAPSTTIEVLTPDFLRKPHA 180 (329)
Q Consensus 102 FC~V~~G~P~~~D~~EP~rvA~av~~l~Lk~vViTSV~RDDL~DgGA~hfa~~I-~~Ir~~~P~~~IEvLiPDf~G~~~a 180 (329)
+-+-........+.++-..++++..++|..++-+.+..+-+..-......+... +......+.+.. +-....
T Consensus 14 lRDG~Q~~~~~~~~~~~~~i~~~l~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 86 (307)
T 1ydo_A 14 PRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAIDVAKGIDREKGVTYAAL-------VPNQRG 86 (307)
T ss_dssp HHHTGGGSSSCCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTCEEEEE-------CCSHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEHH-------HCCCHH
T ss_conf 8863659899989999999999999819898994787584527777889999974774545321001-------102327
Q ss_pred HHHHHHCCCHHHHHCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHCCCEEEECCCEEEE------EEECHHHHHHHHH
Q ss_conf 99874107023320138300027563897---03589999999999708916701404887------6420688999999
Q gi|254780676|r 181 LEKVVSAKPDVFNHNLETVASNYLMVRPG---ARYFHSLRLLQRVKELDPLIFTKSGIMLG------LGETRNEILQLMD 251 (329)
Q Consensus 181 l~~v~~A~pdV~nHNiETV~rLy~~VRp~---a~Y~rSL~vL~~aK~~~~~i~TKSGlMvG------LGEt~eEi~e~l~ 251 (329)
+.....++.+.+.=-+.+.+.....++.. ...++-+..++.+++.|..+. ..+|.- ---+.+.+.+.++
T Consensus 87 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~G~~v~--~~l~~~~~~~d~~~~~~~~l~~~~~ 164 (307)
T 1ydo_A 87 LENALEGGINEACVFXSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTR--AYLSTVFGCPYEKDVPIEQVIRLSE 164 (307)
T ss_dssp HHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEE--EEEECTTCBTTTBCCCHHHHHHHHH
T ss_pred HHHHHCCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEE--EEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 99863044435888730126554543105489877667777765403210001--2332204665232210678899999
Q ss_pred HHHHCCCCEEECC
Q ss_conf 9996699399750
Q gi|254780676|r 252 DLRTADVDFLTMG 264 (329)
Q Consensus 252 DLr~~gvdilTiG 264 (329)
.+.+.|+|.+.|-
T Consensus 165 ~~~~~g~~~i~l~ 177 (307)
T 1ydo_A 165 ALFEFGISELSLG 177 (307)
T ss_dssp HHHHHTCSCEEEE
T ss_pred HHHHCCCEEEECC
T ss_conf 9986398078514