HHSEARCH alignment of GI: 254780676 and SCOP domain: d1olta_

Alignment
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}
Probab=98.32  E-value=3.8e-06  Score=61.78  Aligned_cols=219  Identities=14%  Similarity=0.211  Sum_probs=140.0

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHHC-----CCEEEEECC-----CCCCCCCCHHHHHHHH
Q ss_conf             269998665223535223446789988882357999999-99707-----751898505-----4453453258999999
Q gi|254780676|r   86 HATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWA-VRSMK-----LSHVVITSV-----DRDDLDDGGAQHFAEV  154 (329)
Q Consensus        86 tATFMilG~~CTR~C~FC~V~~G~P~~~D~~EP~rvA~a-v~~l~-----Lk~vViTSV-----~RDDL~DgGA~hfa~~  154 (329)
                      -...-|-=.-|...|.||+..+-.....+.-  .+-.++ ++++.     +.-.-|+++     +=.-|   ....+.+.
T Consensus        49 plsLYiHiPFC~~~C~yC~~~~~~~~~~~~~--~~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTPt~L---~~~~l~~l  123 (441)
T d1olta_          49 PLSLYVHIPFCHKLCYFCGCNKIVTRQQHKA--DQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYL---NKAQISRL  123 (441)
T ss_dssp             CEEEEEEECEESSCCTTCCSSCEECSCTHHH--HHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGS---CHHHHHHH
T ss_pred             CEEEEEEECCCCCCCCCCCCEEECCCCCCHH--HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC---CHHHHHHH
T ss_conf             6289997289788899895836548885509--999999999999966761798503038618884778---99999999


Q ss_pred             HHHHHHHCC-----CCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf             999985335-----868998154623446899987410702332013830-00275638970358999999999970891
Q gi|254780676|r  155 ISAIRESAP-----STTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETV-ASNYLMVRPGARYFHSLRLLQRVKELDPL  228 (329)
Q Consensus       155 I~~Ir~~~P-----~~~IEvLiPDf~G~~~al~~v~~A~pdV~nHNiETV-~rLy~~VRp~a~Y~rSL~vL~~aK~~~~~  228 (329)
                      +..|++..+     +.++|+ -|+-. +.+.|+.+.++|...++=.+++. +...+.+...++.++.++.++.+|++|..
T Consensus       124 l~~l~~~~~~~~~~e~t~E~-~P~~~-~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R~~~~~~~~~~~~~~r~~g~~  201 (441)
T d1olta_         124 MKLLRENFQFNADAEISIEV-DPREI-ELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFT  201 (441)
T ss_dssp             HHHHHHHSCEEEEEEEEEEE-CSSSC-CTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHCCCCCHHCCCCCC-CCCCC-CHHHHHHHHHHCCCEEEECCHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf             99876522345000022102-34542-05789999971985599512001304554430578789999999987741442


Q ss_pred             EEECCCEEEEE-EECHHHHHHHHHHHHHCCCCEEECCHHCC-CCCCCC----CCCCCCCHHHHH----HHHHHHHHCCCC
Q ss_conf             67014048876-42068899999999966993997502227-861007----800023846999----999999974962
Q gi|254780676|r  229 IFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQYLQ-PTRKHH----KVESFVTPQDFK----SYETIAYSKGFL  298 (329)
Q Consensus       229 i~TKSGlMvGL-GEt~eEi~e~l~DLr~~gvdilTiGQYL~-Ps~~h~----pV~ryv~P~eF~----~~~~~a~~~Gf~  298 (329)
                      - .-..||.|| |+|.+.+.++++.+.+.++|-|++-+|-- |+....    .-.....+++-.    ...+.-.+.||.
T Consensus       202 ~-vn~DLI~GlPgqT~~~~~~tl~~~~~l~pd~is~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~~~~~L~~~GY~  280 (441)
T d1olta_         202 S-TNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQ  280 (441)
T ss_dssp             S-CEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             E-EECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             3-623544323776037788999899850887422322112461267663022320024578889999999999873831


Q ss_pred             EEECCCCCCCCHHH
Q ss_conf             43404830010318
Q gi|254780676|r  299 MVSASPLTRSSYHA  312 (329)
Q Consensus       299 ~V~SgPlVRSSY~A  312 (329)
                      ...-.-++|....-
T Consensus       281 ~~~~~~far~~~~~  294 (441)
T d1olta_         281 FIGMDHFARPDDEL  294 (441)
T ss_dssp             EEETTEEECTTSHH
T ss_pred             HHHHHHHHHCCHHH
T ss_conf             01488764114036


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Oxygen-independent coproporphyrinogen III oxidase HemN
domain: Oxygen-independent coproporphyrinogen III oxidase HemN
species: Escherichia coli [TaxId: 562]