RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus
Liberibacter asiaticus str. psy62]
         (329 letters)



>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster,
           transferase; HET: SAM DTB; 3.40A {Escherichia coli}
           SCOP: c.1.28.1
          Length = 369

 Score = 84.5 bits (208), Expect = 3e-17
 Identities = 32/210 (15%), Positives = 73/210 (34%), Gaps = 13/210 (6%)

Query: 89  FMILGAICTRACTFC------NVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDD 142
             I    C   C +C             + ++ ++    +   ++   +   + +    +
Sbjct: 69  LSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGA-AWKN 127

Query: 143 LDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASN 202
             +    +  +++  ++       + + T          +++ +A  D +NHNL+T    
Sbjct: 128 PHERDMPYLEQMVQGVKAMGLEACMTLGTLSE----SQAQRLANAGLDYYNHNLDTSPEF 183

Query: 203 YLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLT 262
           Y  +     Y   L  L++V++    I   SG ++GLGET  +   L+  L        +
Sbjct: 184 YGNIITTRTYQERLDTLEKVRDAG--IKVCSGGIVGLGETVKDRAGLLLQLANLPTPPES 241

Query: 263 MGQYLQPTRKHHKVESFVTPQDFKSYETIA 292
           +   +    K   +        F    TIA
Sbjct: 242 VPINMLVKVKGTPLADNDDVDAFDFIRTIA 271


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 51/321 (15%), Positives = 82/321 (25%), Gaps = 173/321 (53%)

Query: 24  LRHPEKIHKPDTEKMQKPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWN 83
           L +P     PD + +       +  P+S                       CP IG    
Sbjct: 219 LENPSNT--PDKDYL-------LSIPIS-----------------------CPLIG---- 242

Query: 84  KNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLS----H------- 132
                   +  +     T   +  G      P E       +RS  L     H       
Sbjct: 243 --------VIQLAHYVVT-AKL-LG----FTPGE-------LRSY-LKGATGHSQGLVTA 280

Query: 133 VVITSVDRDDLDDGGAQHFAE-VISAIR----------ESAPSTTIE--VL--------- 170
           V I   D  +        F   V  AI           E+ P+T++   +L         
Sbjct: 281 VAIAETDSWE-------SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333

Query: 171 TP-------DFLRKPHALEKVVSAKPDVFNHNL---ETVA---SNYLMVRPGARYF---- 213
            P       +  ++   ++  V    +  N +L   + V     N      GA+      
Sbjct: 334 VPSPMLSISNLTQE--QVQDYV----NKTNSHLPAGKQVEISLVN------GAKNLVVSG 381

Query: 214 -----HSL-RLLQRVK---ELD----PLIFTKSGIMLGLGETR-----NEIL-------- 247
                + L   L++ K    LD    P  F++          R     N  L        
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIP--FSE----------RKLKFSNRFLPVASPFHS 429

Query: 248 --------QLMDDLRTADVDF 260
                    +  DL   +V F
Sbjct: 430 HLLVPASDLINKDLVKNNVSF 450


>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet
           cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation,
           beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga
           maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
          Length = 348

 Score = 32.3 bits (72), Expect = 0.17
 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 13/177 (7%)

Query: 95  ICTRACTFCNVATG----KPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQH 150
           +C + C +C +       K   + P+E    +          +V+ S +           
Sbjct: 62  VCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYXMP----- 116

Query: 151 FAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGA 210
             +VIS I +      + V            EK   A  D +    ET            
Sbjct: 117 --DVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPD 174

Query: 211 RYFHSLRLLQRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQY 266
             F + RL   +   +    T +G M+GL G+T ++++  +  L+  D D + +G +
Sbjct: 175 TSFEN-RLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPF 230


>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
           3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
          Length = 660

 Score = 29.6 bits (66), Expect = 0.96
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 156 SAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVF 192
            ++   A    I V  PD +  P  +E++    PDV 
Sbjct: 43  GSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVI 79


>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
           2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
          Length = 318

 Score = 28.0 bits (62), Expect = 3.4
 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 1/57 (1%)

Query: 139 DRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT-PDFLRKPHALEKVVSAKPDVFNH 194
            R DL +      + ++  + +S       V   P  +      +     K  V   
Sbjct: 89  SRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS 145


>3e59_A Pyoverdine biosynthesis protein PVCA; isonitrIle, paerucumarin,
           2-isocyano-6,7- dihydroxycoumarin, transferase; HET:
           PGE; 2.10A {Pseudomonas aeruginosa}
          Length = 330

 Score = 27.5 bits (61), Expect = 4.1
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 136 TSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV---- 191
           ++ + D++          + + I    P   IE + P F  K     KV+ ++PD+    
Sbjct: 32  SASEADEIRRIEQVQLPRIAAFIEAGEP---IEFVLPAFPAKSPNPGKVLDSRPDMAERL 88

Query: 192 ----FNHNLETVASNYLMVRPGAR 211
                NH  + +   Y    PGA+
Sbjct: 89  SLSFLNHLCQRIQLFY---APGAK 109


>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
           lyase, phosphate-binding sites; 1.45A {Thermotoga
           maritima} SCOP: c.1.2.1 PDB: 2a0n_A* 1gpw_A 1vh7_A
           2rkx_A
          Length = 253

 Score = 26.7 bits (58), Expect = 6.8
 Identities = 11/69 (15%), Positives = 22/69 (31%)

Query: 78  IGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITS 137
           I +      +  +++     R      V T   +        +    V       +++TS
Sbjct: 113 ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTS 172

Query: 138 VDRDDLDDG 146
           +DRD    G
Sbjct: 173 IDRDGTKSG 181


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 7.6
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 34/53 (64%)

Query: 124 AVR----SMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPS----TTIE 168
           A++    S+KL                    +A+      +SAP+     T+E
Sbjct: 21  ALKKLQASLKL--------------------YAD------DSAPALAIKATME 47


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,848,430
Number of extensions: 131245
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 10
Length of query: 329
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 236
Effective length of database: 3,438,538
Effective search space: 811494968
Effective search space used: 811494968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)