RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus Liberibacter asiaticus str. psy62] (329 letters) >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Length = 369 Score = 84.5 bits (208), Expect = 3e-17 Identities = 32/210 (15%), Positives = 73/210 (34%), Gaps = 13/210 (6%) Query: 89 FMILGAICTRACTFC------NVATGKPQPLDPQEPENISWAVRSMKLSHVVITSVDRDD 142 I C C +C + ++ ++ + ++ + + + + Sbjct: 69 LSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGA-AWKN 127 Query: 143 LDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASN 202 + + +++ ++ + + T +++ +A D +NHNL+T Sbjct: 128 PHERDMPYLEQMVQGVKAMGLEACMTLGTLSE----SQAQRLANAGLDYYNHNLDTSPEF 183 Query: 203 YLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLGETRNEILQLMDDLRTADVDFLT 262 Y + Y L L++V++ I SG ++GLGET + L+ L + Sbjct: 184 YGNIITTRTYQERLDTLEKVRDAG--IKVCSGGIVGLGETVKDRAGLLLQLANLPTPPES 241 Query: 263 MGQYLQPTRKHHKVESFVTPQDFKSYETIA 292 + + K + F TIA Sbjct: 242 VPINMLVKVKGTPLADNDDVDAFDFIRTIA 271 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 51.5 bits (123), Expect = 3e-07 Identities = 51/321 (15%), Positives = 82/321 (25%), Gaps = 173/321 (53%) Query: 24 LRHPEKIHKPDTEKMQKPDWIRVRAPVSSGYKETYNILRSRNLTTVCEEAGCPNIGECWN 83 L +P PD + + + P+S CP IG Sbjct: 219 LENPSNT--PDKDYL-------LSIPIS-----------------------CPLIG---- 242 Query: 84 KNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLS----H------- 132 + + T + G P E +RS L H Sbjct: 243 --------VIQLAHYVVT-AKL-LG----FTPGE-------LRSY-LKGATGHSQGLVTA 280 Query: 133 VVITSVDRDDLDDGGAQHFAE-VISAIR----------ESAPSTTIE--VL--------- 170 V I D + F V AI E+ P+T++ +L Sbjct: 281 VAIAETDSWE-------SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333 Query: 171 TP-------DFLRKPHALEKVVSAKPDVFNHNL---ETVA---SNYLMVRPGARYF---- 213 P + ++ ++ V + N +L + V N GA+ Sbjct: 334 VPSPMLSISNLTQE--QVQDYV----NKTNSHLPAGKQVEISLVN------GAKNLVVSG 381 Query: 214 -----HSL-RLLQRVK---ELD----PLIFTKSGIMLGLGETR-----NEIL-------- 247 + L L++ K LD P F++ R N L Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIP--FSE----------RKLKFSNRFLPVASPFHS 429 Query: 248 --------QLMDDLRTADVDF 260 + DL +V F Sbjct: 430 HLLVPASDLINKDLVKNNVSF 450 >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Length = 348 Score = 32.3 bits (72), Expect = 0.17 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 13/177 (7%) Query: 95 ICTRACTFCNVATG----KPQPLDPQEPENISWAVRSMKLSHVVITSVDRDDLDDGGAQH 150 +C + C +C + K + P+E + +V+ S + Sbjct: 62 VCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYXMP----- 116 Query: 151 FAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLMVRPGA 210 +VIS I + + V EK A D + ET Sbjct: 117 --DVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPD 174 Query: 211 RYFHSLRLLQRVKELDPLIFTKSGIMLGL-GETRNEILQLMDDLRTADVDFLTMGQY 266 F + RL + + T +G M+GL G+T ++++ + L+ D D + +G + Sbjct: 175 TSFEN-RLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPF 230 >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 Score = 29.6 bits (66), Expect = 0.96 Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 156 SAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVF 192 ++ A I V PD + P +E++ PDV Sbjct: 43 GSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVI 79 >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318 Score = 28.0 bits (62), Expect = 3.4 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 1/57 (1%) Query: 139 DRDDLDDGGAQHFAEVISAIRESAPSTTIEVLT-PDFLRKPHALEKVVSAKPDVFNH 194 R DL + + ++ + +S V P + + K V Sbjct: 89 SRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS 145 >3e59_A Pyoverdine biosynthesis protein PVCA; isonitrIle, paerucumarin, 2-isocyano-6,7- dihydroxycoumarin, transferase; HET: PGE; 2.10A {Pseudomonas aeruginosa} Length = 330 Score = 27.5 bits (61), Expect = 4.1 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 14/84 (16%) Query: 136 TSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDV---- 191 ++ + D++ + + I P IE + P F K KV+ ++PD+ Sbjct: 32 SASEADEIRRIEQVQLPRIAAFIEAGEP---IEFVLPAFPAKSPNPGKVLDSRPDMAERL 88 Query: 192 ----FNHNLETVASNYLMVRPGAR 211 NH + + Y PGA+ Sbjct: 89 SLSFLNHLCQRIQLFY---APGAK 109 >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2a0n_A* 1gpw_A 1vh7_A 2rkx_A Length = 253 Score = 26.7 bits (58), Expect = 6.8 Identities = 11/69 (15%), Positives = 22/69 (31%) Query: 78 IGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPENISWAVRSMKLSHVVITS 137 I + + +++ R V T + + V +++TS Sbjct: 113 ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTS 172 Query: 138 VDRDDLDDG 146 +DRD G Sbjct: 173 IDRDGTKSG 181 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.5 bits (57), Expect = 7.6 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 34/53 (64%) Query: 124 AVR----SMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPS----TTIE 168 A++ S+KL +A+ +SAP+ T+E Sbjct: 21 ALKKLQASLKL--------------------YAD------DSAPALAIKATME 47 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.134 0.402 Gapped Lambda K H 0.267 0.0431 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,848,430 Number of extensions: 131245 Number of successful extensions: 330 Number of sequences better than 10.0: 1 Number of HSP's gapped: 329 Number of HSP's successfully gapped: 10 Length of query: 329 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 236 Effective length of database: 3,438,538 Effective search space: 811494968 Effective search space used: 811494968 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.5 bits)