BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus Liberibacter asiaticus str. psy62] (329 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 329 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/329 (100%), Positives = 329/329 (100%) Query: 1 MVTVFDTINKKKHVLHATPNAERLRHPEKIHKPDTEKMQKPDWIRVRAPVSSGYKETYNI 60 MVTVFDTINKKKHVLHATPNAERLRHPEKIHKPDTEKMQKPDWIRVRAPVSSGYKETYNI Sbjct: 1 MVTVFDTINKKKHVLHATPNAERLRHPEKIHKPDTEKMQKPDWIRVRAPVSSGYKETYNI 60 Query: 61 LRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPEN 120 LRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPEN Sbjct: 61 LRSRNLTTVCEEAGCPNIGECWNKNHATFMILGAICTRACTFCNVATGKPQPLDPQEPEN 120 Query: 121 ISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHA 180 ISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHA Sbjct: 121 ISWAVRSMKLSHVVITSVDRDDLDDGGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHA 180 Query: 181 LEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG 240 LEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG Sbjct: 181 LEKVVSAKPDVFNHNLETVASNYLMVRPGARYFHSLRLLQRVKELDPLIFTKSGIMLGLG 240 Query: 241 ETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMV 300 ETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMV Sbjct: 241 ETRNEILQLMDDLRTADVDFLTMGQYLQPTRKHHKVESFVTPQDFKSYETIAYSKGFLMV 300 Query: 301 SASPLTRSSYHAGDDFLRLKNNRRQHLHE 329 SASPLTRSSYHAGDDFLRLKNNRRQHLHE Sbjct: 301 SASPLTRSSYHAGDDFLRLKNNRRQHLHE 329 >gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 294 Score = 22.7 bits (47), Expect = 7.9, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%) Query: 2 VTVFDTINKKKHVLHATPNAERLRHP-----EKIHKPDTEK 37 +T D N KK+ L+A +E++R+ +I K D EK Sbjct: 144 LTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEK 184 >gi|254780876|ref|YP_003065289.1| hypothetical protein CLIBASIA_03865 [Candidatus Liberibacter asiaticus str. psy62] Length = 210 Score = 22.7 bits (47), Expect = 8.2, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 146 GGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLM 205 G AQH AE S + A S V+ + L+ ++VS L+ + L+ Sbjct: 45 GTAQHIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLL 104 Query: 206 VR 207 V+ Sbjct: 105 VK 106 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.134 0.402 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 211,770 Number of Sequences: 1233 Number of extensions: 8295 Number of successful extensions: 23 Number of sequences better than 100.0: 3 Number of HSP's better than 100.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 3 length of query: 329 length of database: 328,796 effective HSP length: 74 effective length of query: 255 effective length of database: 237,554 effective search space: 60576270 effective search space used: 60576270 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)