HHsearch alignment for GI: 254780677 and conserved domain: cd00177
>cd00177 START START(STeroidogenic Acute Regulatory (STAR) related lipid Transfer) Domain. These domains are 200-210 amino acid in length and occur in proteins involved in lipid transport (phosphatidylcholine) and metabolism, signal transduction, and transcriptional regulation. The most striking feature of the START domain structure is a predominantly hydrophobic tunnel extending nearly the entire protein and used to binding a single molecule of large lipophilic compounds, like cholesterol.
Probab=98.50 E-value=2.7e-05 Score=54.21 Aligned_cols=138 Identities=13% Similarity=0.218 Sum_probs=101.7
Q ss_pred EEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCE--EEEEEEE-EEEC-CC-CCEEEEE
Q ss_conf 9983598799999987574231018752057999726888841999999962312--6899988-8615-76-6208963
Q gi|254780677|r 7 DRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYAC--MQREFMT-QVRI-NQ-KEHYIAV 81 (152)
Q Consensus 7 ~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~--~~~~~~s-~~~~-~~-~~~~i~~ 81 (152)
T Consensus 58 ~~~v~~~~~~l~d~l~d~~~r~~Wd~~~~~~~vi~~~~~~--~~~~~~~~~~~p~lv~~RDfv~lR~~~~~~~~~~~i~~ 135 (212)
T cd00177 58 TGVVDVTAETLVDVLMDVEKRPEWDPNVKTLEVIETGDGG--DLMIYELQAPSPGLVPPRDFVFLRYCKRLEDGTYVIVD 135 (212)
T ss_pred EEEECCCHHHHHHHHHCHHHHHHHHHCCCEEEEEEECCCC--CEEEEEEECCCCCCCCCEEEEEEEEEEECCCCCEEEEE
T ss_conf 8763288999999996947776653134579999862799--58999997478764365289999999994999699999
Q ss_pred ECCCCC----------EEEEEEEEEEEECCCCCEEEEEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 124541----------0211379999987998189999999850887--8999999999999999999999999977
Q gi|254780677|r 82 KHIKNL----------FNFLENHWHFEEISESKCKVHFSIKYELKNR--LFDMMLKAIFDPSFLSFAKAFEERAHKI 146 (152)
Q Consensus 82 ~~~~g~----------f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~--~~~~~~~~~~~~~~~~~i~aF~~Ra~~~ 146 (152)
T Consensus 136 ~Sv~~~~~p~~~~~vR~~~~~sg~~i~~~~~g~skvt~v~~~d~~g~~~lp~~lv~~~~~~~~~~~~~~L~~~c~~~ 212 (212)
T cd00177 136 VSVDHPSVPPSPGYVRAENLPSGCLIQPLPPGYSKVTWVEHVDLKGWGSLPRPLVNSGLAFGAARWVATLRRQCERL 212 (212)
T ss_pred EECCCCCCCCCCCCEEEEEECCEEEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 95668888876772445221526999988999719999998668885216899987687867999999999997439