HHsearch alignment of GI: 254780677 and MMDB domain: 1jss_A_
>1jss_A (A:) Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus}
Probab=99.06 E-value=9.7e-09 Score=75.85 Aligned_cols=143 Identities=9% Similarity=0.078 Sum_probs=104.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECC-CEE-EEEEEE--EEECCCCCE
Q ss_conf 7248999835987999999875742310187520579997268888419999999623-126-899988--861576620
Q gi|254780677|r 2 YHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINY-ACM-QREFMT--QVRINQKEH 77 (152)
Q Consensus 2 ~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~-~~~-~~~~~s--~~~~~~~~~ 77 (152)
+.+..+.+|++||+++++++.|++.+++|-|.|.+++++++.+.+... +........ ... ...+.. ....+.+..
T Consensus 67 ~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~~l~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (224)
T 1jss_A 67 YLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCV-MRYTTAGQLLNIISPREFVDFSYTVGYEEGL 145 (224)
T ss_dssp EEEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEE-EEEEECCBTTTTBCCEEEEEEEEEEEETTEE
T ss_pred EEEEEEEEEECCHHHHHHHHHCHHHHHHHHHHHHHEEEEEECCCCCEE-EEEEECCCCCCCCCCCEEEEEEEEEECCCCE
T ss_conf 699999999089999999986958788888888650686642899399-9999745588876765499999999759948
Q ss_pred EEEEECCCC--------CEEEEEEEEEEEECCCC--CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 896312454--------10211379999987998--189999999850887899999999999999999999999997
Q gi|254780677|r 78 YIAVKHIKN--------LFNFLENHWHFEEISES--KCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHK 145 (152)
Q Consensus 78 ~i~~~~~~g--------~f~~~~g~W~f~~~~~~--~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~ 145 (152)
++...+.+. ..+.+.+.|.|+++++| .|+|++....+++.++...+++.+......+++....+.+++
T Consensus 146 ~~~~~Sv~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~t~vt~~~~~D~~g~iP~~l~n~~~~~~~~~~~~~l~k~~~k 223 (224)
T 1jss_A 146 LSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKGLRK 223 (224)
T ss_dssp EEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCCCHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999984267899988589899633589998789998289999997178987759999999998799999999999732