HHsearch alignment of GI: 254780677 and MMDB domain: 1xfs_A_
>1xfs_A (A:) NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, alpha-beta protein, PSI; 1.70A {Nitrosomonas europaea atcc 19718}
Probab=98.78 E-value=1.6e-06 Score=61.73 Aligned_cols=146 Identities=6% Similarity=-0.091 Sum_probs=91.2
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 24899983598799999987574231018752057999726888841999999962312689998886157662089631
Q gi|254780677|r 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIAVK 82 (152)
Q Consensus 3 ~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~~~~~~~~~i~~~ 82 (152)
.++.++.|++||++||++++|.+++++|.+.+.........+-..+..+....... .+........+.--.+++.|.+.
T Consensus 11 ~i~~~~~i~Ap~~~Vw~~~td~~~~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~-~~~~~~~~~~v~e~~p~~~i~~~ 89 (178)
T 1xfs_A 11 DLXLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVXQDP-EGNKFPNSGCFLEVTDEKRLIWT 89 (178)
T ss_dssp EEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECT-TCCEEEEEEEEEEEETTTEEEEE
T ss_pred EEEEEEEECCCHHHHHHHHCCHHHHCCCCCCCCCCCEEEECCEECCCEEEEEEECC-CCCEEEEEEEEEECCCCEEEEEE
T ss_conf 89999996799999999975988972556689951256321102496389977479-99776778999981686699999
Q ss_pred CC----------------CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24----------------54102113799999879981899999998508878999999999999999999999999977
Q gi|254780677|r 83 HI----------------KNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKI 146 (152)
Q Consensus 83 ~~----------------~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra~~~ 146 (152)
.. .+.-....-.|.|++.+ ++|+|++...+....... ......+......+++.+++.++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~l~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~~Lk~~lE~~ 167 (178)
T 1xfs_A 90 SALVKNYRPAVPATTSDKECAHIVXTAVIELQPTS-SGTRYTACAXHNTPGQRK-LHEEXGFHEGWGTTITQLEELLKQE 167 (178)
T ss_dssp SSEEGGGEECCC-----------CCEEEEEEEECS-SSEEEEEEEECSSHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC-CCEEEEEEEECCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 84056657565555556677887579999999739-938999999747831488-9998779989999999999999738
Q ss_pred CCCCC
Q ss_conf 08999
Q gi|254780677|r 147 YHLPS 151 (152)
Q Consensus 147 yg~~~ 151 (152)
-+.|.
T Consensus 168 ~~~~~ 172 (178)
T 1xfs_A 168 KAYLE 172 (178)
T ss_dssp SCC--
T ss_pred CCCCC
T ss_conf 55333