HHSEARCH alignment of GI: 254780677 and SCOP domain: d1jssa_

Alignment
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.86  E-value=8.1e-08  Score=67.45  Aligned_cols=139  Identities=10%  Similarity=0.108  Sum_probs=94.1

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEEC-CCE-E-EEEEE-EEEECCCCCEE
Q ss_conf             24899983598799999987574231018752057999726888841999999962-312-6-89998-88615766208
Q gi|254780677|r    3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTIN-YAC-M-QREFM-TQVRINQKEHY   78 (152)
Q Consensus         3 ~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~-~~~-~-~~~~~-s~~~~~~~~~~   78 (152)
                      .++.+.+|++|++++++++.|.+.+++|.|.|.+++++++.+... ..+. .+.-. ..+ . ...|+ .+.....++..
T Consensus        45 ~~r~~~~i~~~~~~v~~~l~d~~~~~~Wd~~~~~~~~le~~~~~~-~i~~-~~~~~~~~~~v~~RD~v~~~~~~~~~~~~  122 (199)
T d1jssa_          45 LYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENC-CVMR-YTTAGQLLNIISPREFVDFSYTVGYEEGL  122 (199)
T ss_dssp             EEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTE-EEEE-EEECCBTTTTBCCEEEEEEEEEEEETTEE
T ss_pred             EEEEEEEECCCHHHHHHHHHCHHHHHHCCCCHHEEEEEEECCCCC-EEEE-EEECCCCCCCCCCCEEEEEEEEEECCCCE
T ss_conf             999999967999999998839555530055512199999728993-9999-99833478876870899999999869957


Q ss_pred             EEEEC--CC-----CC--EEEEEEEEEEEECCCC--CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             96312--45-----41--0211379999987998--1899999998508878999999999999999999999999
Q gi|254780677|r   79 IAVKH--IK-----NL--FNFLENHWHFEEISES--KCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERA  143 (152)
Q Consensus        79 i~~~~--~~-----g~--f~~~~g~W~f~~~~~~--~t~V~~~l~fe~~~~~~~~~~~~~~~~~~~~~i~aF~~Ra  143 (152)
                      +....  ..     |-  ...+.+.|.|+|+++|  .|+|++.+..+++..+...+++.++....-..+++++++.
T Consensus       123 ~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~l  198 (199)
T d1jssa_         123 LSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKGL  198 (199)
T ss_dssp             EEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999853878999846987996114899986899870899999972889877299999999987999999999861


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]