HHSEARCH alignment of GI: 254780677 and SCOP domain: d1xfsa_

Alignment
>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}
Probab=97.83  E-value=0.0012  Score=40.89  Aligned_cols=138  Identities=7%  Similarity=-0.065  Sum_probs=71.2

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCHHHCCC-CCEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEEE-ECCCCCEEE
Q ss_conf             72489998359879999998757423101875-2057999726888841999999962312689998886-157662089
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSDIERYPEFVPL-CKKVVIHERDNYGENEVLVASMTINYACMQREFMTQV-RINQKEHYI   79 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~-c~~~~v~~r~~~~~~~~~~a~l~v~~~~~~~~~~s~~-~~~~~~~~i   79 (152)
                      ..+.-++.|++|+++||+.++|-+.+.+|... --.....+-+..- +..+...+....+ .......++ ..+++.+..
T Consensus         5 ~~l~i~r~i~ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~-GG~~~~~~~~~~g-~~~~~~g~v~ei~p~~rl~   82 (165)
T d1xfsa_           5 LDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRP-GGEFYTVMQDPEG-NKFPNSGCFLEVTDEKRLI   82 (165)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCST-TCEEEEEEECTTC-CEEEEEEEEEEEETTTEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHCCHHHHHHCCCCCCCCCEEECCCCEE-CCEEEEEEECCCC-CEEEEEEEEEEECCCCEEE
T ss_conf             0899999976999999999759899832178999521563135250-8518999987999-6666799999824994899


Q ss_pred             EEE-C--------------CCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             631-2--------------4541021137999998799818999999985088789-99999999999999999999999
Q gi|254780677|r   80 AVK-H--------------IKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLF-DMMLKAIFDPSFLSFAKAFEERA  143 (152)
Q Consensus        80 ~~~-~--------------~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~~~~-~~~~~~~~~~~~~~~i~aF~~Ra  143 (152)
                      ... .              ...........|.|++.+ ++|+|++...+.  ++-- ......-+...-..+++.+++.+
T Consensus        83 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~gT~lt~~~~~~--~~~~~~~~~~~g~~~GW~~~l~~L~~~l  159 (165)
T d1xfsa_          83 WTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTS-SGTRYTACAMHN--TPGQRKLHEEMGFHEGWGTTITQLEELL  159 (165)
T ss_dssp             EESSEEGGGEECCC-----------CCEEEEEEEECS-SSEEEEEEEECS--SHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC-CCEEEEEEEECC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9985056656555544456677786479999999769-958999999868--8778899998779999999999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780677|r  144 H  144 (152)
Q Consensus       144 ~  144 (152)
                      +
T Consensus       160 e  160 (165)
T d1xfsa_         160 K  160 (165)
T ss_dssp             H
T ss_pred             H
T ss_conf             7


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]