HHSEARCH alignment of GI: 254780677 and SCOP domain: d2k5ga1

Alignment
>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}
Probab=96.96  E-value=0.013  Score=34.20  Aligned_cols=106  Identities=7%  Similarity=0.037  Sum_probs=58.2

Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCEEEEEEEEECC------------CEEEEEEEE-
Q ss_conf             7248999835987999999875742310187520579997268888419999999623------------126899988-
Q gi|254780677|r    2 YHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINY------------ACMQREFMT-   68 (152)
Q Consensus         2 ~~~~~~~~i~~~~e~i~~iV~Dve~YpeFlP~c~~~~v~~r~~~~~~~~~~a~l~v~~------------~~~~~~~~s-   68 (152)
                      ..++-++.|++|+++||+.++|-+...+|...+.   +   +. .-+..+...+....            .+....... 
T Consensus        19 ~~l~~er~~~Ap~e~VW~AlTdpe~l~~W~~p~~---~---d~-~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   91 (183)
T d2k5ga1          19 QSIRFERLLPGPIERVWAWLADADKRARWLAGGE---L---PR-QPGQTFELHFNHAALTAETAPARYAQYDRPIVARHT   91 (183)
T ss_dssp             SSEEEEEEESSSSHHHHHHHHCHHHHTTTSCCCC---C---CS-STTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEEEE
T ss_pred             CEEEEEEEECCCHHHHHHHHHCHHHHHHHCCCCC---C---CC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             6699999957999999999709688854158887---5---24-278789999537887532222211367874157899


Q ss_pred             EEECCCCCEEEEEEC-CCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC
Q ss_conf             861576620896312-4541021137999998799818999999985088
Q gi|254780677|r   69 QVRINQKEHYIAVKH-IKNLFNFLENHWHFEEISESKCKVHFSIKYELKN  117 (152)
Q Consensus        69 ~~~~~~~~~~i~~~~-~~g~f~~~~g~W~f~~~~~~~t~V~~~l~fe~~~  117 (152)
                      -..++++.+ +.+.- ..+.-....-.|+|++.+ ++|++++...- +..
T Consensus        92 v~~~~p~~r-l~~tw~~~~~~~~s~v~~~l~~~g-~gT~ltl~~~~-~~~  138 (183)
T d2k5ga1          92 LLRCEPPRV-LALTWGGGAGEAPSEVLFELSEAG-EQVRLVLTHTR-LAD  138 (183)
T ss_dssp             EEEEETTTE-EEEECCCCSSSSCCEEEEEEEECS-SSEEEEEEEEC-CCS
T ss_pred             EEEEECCEE-EEEEECCCCCCCCEEEEEEEEECC-CCEEEEEEEEC-CCC
T ss_conf             999867818-999851688987679999999769-93999999956-898


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]