RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780677|ref|YP_003065090.1| hypothetical protein
CLIBASIA_02820 [Candidatus Liberibacter asiaticus str. psy62]
         (152 letters)



>gnl|CDD|182678 PRK10724, PRK10724, hypothetical protein; Provisional.
          Length = 158

 Score = 68.4 bits (167), Expect = 7e-13
 Identities = 34/139 (24%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 9   IVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACMQREFMT 68
           +V +S++QM  LV+D++ YP+F+P C    + E       + + A++ ++ A + + F T
Sbjct: 22  LVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLES---TPGQ-MTAAVDVSKAGISKTFTT 77

Query: 69  QVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIF 128
           + ++   +  I ++ +   F  L   W F  +S+  C++ F + +E  N+L ++    +F
Sbjct: 78  RNQLTSNQS-ILMQLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVF 136

Query: 129 DPSFLSFAKAFEERAHKIY 147
                +  +AF  RA ++Y
Sbjct: 137 KELASNMVQAFTVRAKEVY 155


>gnl|CDD|181887 PRK09472, ftsA, cell division protein FtsA; Reviewed.
          Length = 420

 Score = 27.1 bits (60), Expect = 2.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 15/73 (20%)

Query: 15  QQMLSLVSDIE-RYPEFVPLCKKVVIHERDNYGENEV---LVASMTIN---------YAC 61
           +Q L+ V  IE RY E + L  + ++  ++   +  V   L A + +           AC
Sbjct: 290 RQTLAEV--IEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAAC 347

Query: 62  MQREFMTQVRINQ 74
            QR F TQVRI  
Sbjct: 348 AQRVFHTQVRIGA 360


>gnl|CDD|129363 TIGR00261, traB, pheromone shutdown-related protein TraB.  traB is
           a plasmid encoded gene that functions in the shutdown of
           the peptide sex pheromone cPD1 which is produced by the
           plasmid free recipient cell prior to conjugative
           transfer in Enterococcus faecalis. Once the recipient
           acquires the plasmid, production of cPD1 is shut down.
           The gene product may play another role in the other
           species in the family.
          Length = 380

 Score = 26.0 bits (57), Expect = 4.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 15  QQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTIN 58
           Q  LS +  ++   +  P  KKV+I ERD +  N++L      N
Sbjct: 155 QDALSKI--MKELSKISPKVKKVLIDERDEFMANKLLEGEGNKN 196


>gnl|CDD|162140 TIGR00970, leuA_yeast, 2-isopropylmalate synthase, yeast type.  A
           larger family of homologous proteins includes
           homocitrate synthase, distinct lineages of
           2-isopropylmalate synthase, several distinct,
           uncharacterized, orthologous sets in the Archaea, and
           other related enzymes. This model describes a family of
           2-isopropylmalate synthases as found in yeasts and in a
           minority of studied bacteria.
          Length = 564

 Score = 25.6 bits (56), Expect = 5.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 22  SDIERYPEFVPLCKKVVIHERDNYGENEVLVA 53
           S+++     V  C K+ +HER  YG + V  A
Sbjct: 301 SNLDEIRRTVEYCNKIPVHERHPYGGDLVYTA 332


>gnl|CDD|132063 TIGR03018, pepcterm_TyrKin, exopolysaccharide/PEPCTERM locus
           tyrosine autokinase.  Members of this protein family are
           related to a known protein-tyrosine autokinase and to
           numerous homologs from exopolysaccharide biosynthesis
           region proteins, many of which are designated as chain
           length determinants. Most members of this family contain
           a short region, immediately C-terminal to the region
           modeled here, with an abundance of Tyr residues. These
           C-terminal tyrosine residues are likely to be
           autophosphorylation sites. Some members of this family
           are fusion proteins.
          Length = 207

 Score = 25.0 bits (55), Expect = 7.7
 Identities = 8/18 (44%), Positives = 14/18 (77%), Gaps = 1/18 (5%)

Query: 13  SSQQMLSLVSDI-ERYPE 29
           +SQ+M SL+ ++  RYP+
Sbjct: 132 ASQRMRSLLHELARRYPD 149


>gnl|CDD|119007 pfam10487, Nup188, Nucleoporin subcomplex protein binding to Pom34.
            This is one of the many peptides that make up the
           nucleoporin complex (NPC), and is found across
           eukaryotes. The Nup188 subcomplex
           (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six
           that make up the NPC, and as such is symmetrically
           localized on both faces of the NPC at the nuclear end,
           being integrally bound to the C-terminus of Pom34p.
          Length = 931

 Score = 24.8 bits (54), Expect = 8.8
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 1   MYHFTADRIVNHSSQQMLSLVSDIERYPEF 30
            Y      ++N SS +++ L S    YP  
Sbjct: 455 DYDHKPPDVINDSSTELIRLQSPKLVYPPL 484


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0735    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,477,128
Number of extensions: 144696
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 12
Length of query: 152
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,157,793
Effective search space: 278572131
Effective search space used: 278572131
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)