RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780677|ref|YP_003065090.1| hypothetical protein CLIBASIA_02820 [Candidatus Liberibacter asiaticus str. psy62] (152 letters) >1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural genomics, protein structure initiative; NMR {Caulobacter crescentus CB15} (A:) Length = 148 Score = 91.7 bits (227), Expect = 4e-20 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 1/147 (0%) Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60 M+ +++ ++ Q+ LV D++ YP+FVP + G + A + ++ Sbjct: 1 MHRHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFS 60 Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLF 120 ++ +F T+VR ++ I V + F L N W F ++ +V F I++ K+ L Sbjct: 61 FLREKFATRVRRDKDARSIDVSLLYGPFKRLNNGWRFMPEGDA-TRVEFVIEFAFKSALL 119 Query: 121 DMMLKAIFDPSFLSFAKAFEERAHKIY 147 D ML A D + FE RA +++ Sbjct: 120 DAMLAANVDRAAGKLIACFEARAQQLH 146 >2rer_A Multifunctional cyclase-dehydratase-3-O-methyl transferase TCMN; aromatase, polyketide, helix-GRIP, anticancer, antibiotic; 1.90A {Streptomyces glaucescens} (A:) Length = 173 Score = 82.5 bits (203), Expect = 3e-17 Identities = 19/154 (12%), Positives = 50/154 (32%), Gaps = 10/154 (6%) Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60 +VN + + + +DIE +PE + I +D G + Sbjct: 5 AARTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDG--FDFRLKTRPDAN 62 Query: 61 CMQREFMTQVRINQKEHYIAVKHI-KNLFNFLENHWHFEEISESKCKVHFSIKYELKN-- 117 E+++ ++ + + F ++ HW + ++ ++ + ++++K Sbjct: 63 GRVWEWVSHRVPDKGSRTVRAHRVETGPFAYMNLHWTYRAVAGG-TEMRWVQEFDMKPGA 121 Query: 118 ----RLFDMMLKAIFDPSFLSFAKAFEERAHKIY 147 L + K E+R + Sbjct: 122 PFDNAHMTAHLNTTTRANMERIKKIIEDRHREGQ 155 >3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, ABA, ABA sensor, drought tolerance, plant development, SEED dormancy; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3k90_A* 3jrq_B* 3kdj_A* (A:44-211) Length = 168 Score = 81.4 bits (200), Expect = 4e-17 Identities = 8/150 (5%), Positives = 31/150 (20%), Gaps = 6/150 (4%) Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60 + ++ + + S+V ++ + K + + + Sbjct: 6 SCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLP 65 Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNF--LENHWHFEEISES---KCKVHFSIKYEL 115 ++ + I ++ + V S ++ Sbjct: 66 -ANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDM 124 Query: 116 KNRLFDMMLKAIFDPSFLSFAKAFEERAHK 145 + + D + A Sbjct: 125 PEGNSEDDTRMFADTVVKLNLQKLATVAEA 154 >2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus HB8} (A:) Length = 147 Score = 79.8 bits (196), Expect = 2e-16 Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 9/149 (6%) Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62 A+R + +++ L D+E ++ + + + R+ + Sbjct: 3 EVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGAR----TRSRWVAVAXGK 58 Query: 63 QREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDM 122 + ++ + + + + F+ E W F E +V ++ YEL +F Sbjct: 59 KVRWLEEEEWDDENLRNRFFSPEGDFDRYEGTWVFLPEGEG-TRVVLTLTYELTIPIFGG 117 Query: 123 MLKAIFDPS----FLSFAKAFEERAHKIY 147 +L+ + S K EER Sbjct: 118 LLRKLVQKLXQENVESLLKGLEERVLAAS 146 >3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A (A:) Length = 155 Score = 77.5 bits (190), Expect = 7e-16 Identities = 11/148 (7%), Positives = 39/148 (26%), Gaps = 7/148 (4%) Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60 + ++Q+ ++ D+ P + + V + + ++ Sbjct: 3 ETVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDKRSR------WTVEAPAP 56 Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFE-EISESKCKVHFSIKYELKNRL 119 + ++ ++ IA + + F +V + Y Sbjct: 57 LGTVSWEAELTADEPGKRIAWRSLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGS 116 Query: 120 FDMMLKAIFDPSFLSFAKAFEERAHKIY 147 ++ +F+ + R + Sbjct: 117 AGAVIARMFNQEPSQQLRDDLMRFKREQ 144 >3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} PDB: 2b79_A (A:) Length = 155 Score = 72.5 bits (177), Expect = 2e-14 Identities = 13/147 (8%), Positives = 38/147 (25%), Gaps = 9/147 (6%) Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60 F+ + VN + + S + ++ + +++ + G+ M + Sbjct: 17 SMKFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQ----KGKMKMEDM 72 Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKN-RL 119 + +VR NQ F + E + + S+ + Sbjct: 73 PELAFTLVEVRENQCFSD----LTATPFGNVLFEHEILENPDGTISLRHSVSLTDSDTTE 128 Query: 120 FDMMLKAIFDPSFLSFAKAFEERAHKI 146 + ++ + Sbjct: 129 EALAFLKQIFADVPESVGKLKQILETV 155 >2kf2_A Putative polyketide cyclase; aromatase/cyclase, ARO/CYC, structural genomics, PSI-2, protein structure initiative; NMR {Streptomyces coelicolor A3} (A:) Length = 167 Score = 71.0 bits (173), Expect = 7e-14 Identities = 16/148 (10%), Positives = 54/148 (36%), Gaps = 6/148 (4%) Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62 H + + + + ++ +DIE++P V + RD+ +M + Sbjct: 4 HTDNEITIAAPMELVWTMTNDIEKWPGLFSEYASVEVLGRDDDK--VTFRLTMHPDADGK 61 Query: 63 QREFMTQVRINQKEHYIAVKHIKN-LFNFLENHWHFEEISESKCKVHFSIKYELKN--RL 119 ++++ + + + ++ F ++ W + E +E + ++ + +K + Sbjct: 62 VWSWVSERVADPVTRTVRAQRVETGPFQYMNIVWEYAETAEG-TVMRWTQDFAMKPDAPV 120 Query: 120 FDMMLKAIFDPSFLSFAKAFEERAHKIY 147 D + + + + +R + Sbjct: 121 DDAWMTDNINRNSRTQMALIRDRIEQAA 148 >2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI- 2, protein structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus HTA426} (A:) Length = 162 Score = 70.2 bits (171), Expect = 1e-13 Identities = 15/150 (10%), Positives = 48/150 (32%), Gaps = 12/150 (8%) Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62 + + + +++ S + D + + CK + + D Y A + I A + Sbjct: 4 NGNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYK------ADLQIGIAAV 57 Query: 63 QREFMTQVRI-----NQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKN 117 + ++ + + + F E I++ ++ ++ E+ Sbjct: 58 KGKYDAIIEVTDIKPPYHYKLLVNGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGG 117 Query: 118 RLFDMMLKAIFDPSFLSFAKAFEERAHKIY 147 ++ + + + F ++ K Sbjct: 118 KVAAIG-QRMLGGVAKLLISDFFKKIQKEI 146 >3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovarkonkukian} PDB: 3cnw_A (A:) Length = 146 Score = 69.3 bits (169), Expect = 2e-13 Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 11/149 (7%) Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62 H T + S++Q+ L+ P+++P + E + + Sbjct: 3 HTTTSXEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTEGGRV------RHLANPDGETI 56 Query: 63 QREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISE-SKCKVHFSIKYELK---NR 118 + Y ++ + + +E +E + V +S + + Sbjct: 57 IERLEVFNDKERYYTY-SIXNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVAVSDE 115 Query: 119 LFDMMLKAIFDPSFLSFAKAFEERAHKIY 147 ++ I+ + AF + H + Sbjct: 116 EAINLVHGIYSDGLKALQHAFLDLEHHHH 144 >3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid; HET: A8S; 2.05A {Arabidopsis thaliana} (A:48-208) Length = 161 Score = 67.2 bits (163), Expect = 9e-13 Identities = 7/155 (4%), Positives = 29/155 (18%), Gaps = 13/155 (8%) Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60 + ++ + + S+V +R + K + E ++ Sbjct: 6 RCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLP 65 Query: 61 CMQREFMTQVRINQKEHYIAVKHIK--NLFNFLENHWHFEEISESKCKVHFSIKYELK-- 116 ++ + ++ + + + Sbjct: 66 -ANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYV 124 Query: 117 --------NRLFDMMLKAIFDPSFLSFAKAFEERA 143 + + + A E Sbjct: 125 VDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMN 159 >2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, protein structure initiative; 1.80A {Aeropyrum pernix} (A:) Length = 157 Score = 65.5 bits (159), Expect = 3e-12 Identities = 13/145 (8%), Positives = 37/145 (25%), Gaps = 4/145 (2%) Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62 + V+ + +++ ++D +R+ P K V + + E+ ++ + Sbjct: 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTI--ELRLSLGPLRGDAR 71 Query: 63 QREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDM 122 R + K + E +V + + + M Sbjct: 72 VRASFEDLEKPSKATVKGSGRGAGSTLDFTLRFAVEPSGG-GSRVSWVFEGNVGGLAASM 130 Query: 123 MLKAIFDPSFLSFAKAFEERAHKIY 147 + D + Sbjct: 131 G-GRVLDSLARRMINDVISGVKREL 154 >3kdh_A PYL2, putative uncharacterized protein AT2G26040; hormone receptor; 1.65A {Arabidopsis thaliana} PDB: 3kdi_A* (A:29-190) Length = 162 Score = 57.9 bits (139), Expect = 6e-10 Identities = 12/152 (7%), Positives = 38/152 (25%), Gaps = 9/152 (5%) Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60 + ++ + + L+ + + K+ + D + V ++ A Sbjct: 6 TCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPA 65 Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYE------ 114 E + V + + V ++ ++ E +++ E Sbjct: 66 STSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDI 125 Query: 115 ---LKNRLFDMMLKAIFDPSFLSFAKAFEERA 143 M + + + A Sbjct: 126 PEGNTEEDTKMFVDTVVKLNLQKLGVAATSAP 157 >2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} (A:) Length = 156 Score = 42.6 bits (100), Expect = 2e-05 Identities = 11/127 (8%), Positives = 29/127 (22%), Gaps = 14/127 (11%) Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62 V ++ ++ P + + + +++ Sbjct: 28 SRIIHLSVEKPWAEVYDFAANPGNXPRWAAGLAGGLEADGEDWIAK-----------GGP 76 Query: 63 QREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKN--RLF 120 E + + I + N + S +V F++ F Sbjct: 77 LGEVRVNFAPHNEFGVIDHVVTLPDGLKVYNALRVTP-NGSGTEVSFTLLRLEGXTDEDF 135 Query: 121 DMMLKAI 127 + AI Sbjct: 136 EQDASAI 142 >2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* (A:) Length = 201 Score = 33.5 bits (76), Expect = 0.014 Identities = 16/145 (11%), Positives = 46/145 (31%), Gaps = 6/145 (4%) Query: 3 HFTADRIVNHSSQQMLSLVSD---IERYPEFVPLCKKVVIHERD-NYGENEVLVASMTIN 58 + V S+ + ++ S + P+ +P + + D G Sbjct: 30 VIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIGDGGVGTILDXTFVPGEF 89 Query: 59 YACMQREFMTQVRINQKEHYIAVK--HIKNLFNFLENHWHFEEISESKCKVHFSIKYELK 116 + +F+ ++ + ++ ++ + + H + C + S +Y +K Sbjct: 90 PHEYKEKFILVDNEHRLKKVQXIEGGYLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYHVK 149 Query: 117 NRLFDMMLKAIFDPSFLSFAKAFEE 141 ++ I + A A + Sbjct: 150 PEFVKIVEPLITTGPLAAXADAISK 174 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 27.1 bits (59), Expect = 1.2 Identities = 11/103 (10%), Positives = 30/103 (29%), Gaps = 16/103 (15%) Query: 51 LVASMTINYACMQREFMTQVRINQKEHYIAVK-------HIKNLFNFLEN--HWHFEEIS 101 + + A ++ + + + + I + +K + + +E Sbjct: 212 MGKYTEVKTAFGIKD--SVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEAD 269 Query: 102 ESKCKVHFS-----IKYELKNRLFDMMLKAIFDPSFLSFAKAF 139 + IK+ L ++ A F +A+ F Sbjct: 270 NMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF 312 >2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} (A:1-194) Length = 194 Score = 25.4 bits (55), Expect = 3.2 Identities = 8/46 (17%), Positives = 17/46 (36%) Query: 75 KEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLF 120 ++ + + F LE ++ S K + SI +L + Sbjct: 98 RKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTW 143 >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, membrane fusion, snare, RAB GTPase; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A (A:396-651) Length = 256 Score = 25.5 bits (56), Expect = 3.7 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 4/56 (7%) Query: 97 FEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEER-AHKIYHLPS 151 IS+ + S K + + M+ FD F K E IY Sbjct: 186 LGFISKHELYSRASQKPQPNFPSPEYMI---FDHEFTKLVKELEGVITKAIYKSSE 238 >2pef_A Serine protease inhibitor; serpin; 1.60A {Thermoanaerobacter tengcongensis MB4} PDB: 2vh4_A 2pee_A (A:36-174,A:266-338) Length = 212 Score = 24.7 bits (53), Expect = 5.9 Identities = 6/40 (15%), Positives = 14/40 (35%) Query: 108 HFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKIY 147 + ++ L + + F P F+K + +Y Sbjct: 141 KYEYTIKMNETLESLGMTDAFLPDKADFSKLGKSDIGNLY 180 >1sng_A COG4826: serine protease inhibitor; serine protease inhibitor (serpin), native state., hydrolase inhibitor; 1.76A {Thermobifida fusca} (A:39-173,A:261-322) Length = 197 Score = 23.8 bits (51), Expect = 9.9 Identities = 10/88 (11%), Positives = 23/88 (26%), Gaps = 12/88 (13%) Query: 54 SMTINYACMQREFMTQVRINQKEHYIAVKHIKNLFN----------FLENHWHFEEISES 103 S + +N I+ L L N + + Sbjct: 75 SDVRTADFRTNPEGVRATVNADIADATRGMIRELLPQGAVTPDLRAILTNALWAKARWTT 134 Query: 104 KCKVHFSIKYELKNRLFDMMLKAIFDPS 131 ++ ++L L + ++ +F S Sbjct: 135 PFELTQP--HQLVEVLAEAGVRTLFTAS 160 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.326 0.136 0.409 Gapped Lambda K H 0.267 0.0586 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,222,514 Number of extensions: 52208 Number of successful extensions: 214 Number of sequences better than 10.0: 1 Number of HSP's gapped: 210 Number of HSP's successfully gapped: 45 Length of query: 152 Length of database: 4,956,049 Length adjustment: 81 Effective length of query: 71 Effective length of database: 2,217,844 Effective search space: 157466924 Effective search space used: 157466924 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 51 (23.7 bits)