RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780677|ref|YP_003065090.1| hypothetical protein CLIBASIA_02820 [Candidatus Liberibacter asiaticus str. psy62] (152 letters) >1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural genomics, protein structure initiative; NMR {Caulobacter crescentus CB15} SCOP: d.129.3.6 Length = 148 Score = 102 bits (255), Expect = 3e-23 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 1/147 (0%) Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60 M+ +++ ++ Q+ LV D++ YP+FVP + G + A + ++ Sbjct: 1 MHRHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFS 60 Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLF 120 ++ +F T+VR ++ I V + F L N W F ++ +V F I++ K+ L Sbjct: 61 FLREKFATRVRRDKDARSIDVSLLYGPFKRLNNGWRFMPEGDA-TRVEFVIEFAFKSALL 119 Query: 121 DMMLKAIFDPSFLSFAKAFEERAHKIY 147 D ML A D + FE RA +++ Sbjct: 120 DAMLAANVDRAAGKLIACFEARAQQLH 146 >2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus HB8} SCOP: d.129.3.6 Length = 147 Score = 83.1 bits (204), Expect = 3e-17 Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 9/151 (5%) Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60 M A+R + +++ L D+E ++ + + + R+ + Sbjct: 1 MPEVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGAR----TRSRWVAVAM 56 Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLF 120 + ++ + + + + F+ E W F E +V ++ YEL +F Sbjct: 57 GKKVRWLEEEEWDDENLRNRFFSPEGDFDRYEGTWVFLPEGEG-TRVVLTLTYELTIPIF 115 Query: 121 DMMLKAIFDPSF----LSFAKAFEERAHKIY 147 +L+ + S K EER Sbjct: 116 GGLLRKLVQKLMQENVESLLKGLEERVLAAS 146 >2kf2_A Putative polyketide cyclase; aromatase/cyclase, ARO/CYC, structural genomics, PSI-2, protein structure initiative; NMR {Streptomyces coelicolor A3} Length = 167 Score = 72.6 bits (177), Expect = 4e-14 Identities = 16/148 (10%), Positives = 54/148 (36%), Gaps = 6/148 (4%) Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62 H + + + + ++ +DIE++P V + RD + +M + Sbjct: 4 HTDNEITIAAPMELVWTMTNDIEKWPGLFSEYASVEVLGRD--DDKVTFRLTMHPDADGK 61 Query: 63 QREFMTQVRINQKEHYIAVKHIKN-LFNFLENHWHFEEISESKCKVHFSIKYELKN--RL 119 ++++ + + + ++ F ++ W + E +E + ++ + +K + Sbjct: 62 VWSWVSERVADPVTRTVRAQRVETGPFQYMNIVWEYAETAEG-TVMRWTQDFAMKPDAPV 120 Query: 120 FDMMLKAIFDPSFLSFAKAFEERAHKIY 147 D + + + + +R + Sbjct: 121 DDAWMTDNINRNSRTQMALIRDRIEQAA 148 >3p9v_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} Length = 161 Score = 63.4 bits (153), Expect = 2e-11 Identities = 18/149 (12%), Positives = 44/149 (29%), Gaps = 7/149 (4%) Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62 D + S ++ L++D+ + P K+V + + + ++ + Sbjct: 8 ELNRDLEIPASYDEVFDLLADVPKSASHFPKVDKLVDLGNN---AYRWEMEKVGVDKHAI 64 Query: 63 QREFMTQVRINQKEHYIAVK-HIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFD 121 Q + +++ I + W ++ V F EL L Sbjct: 65 QSVYACTYHADKEAGKITWSPIKGEGNGVVSGSWTLSAKGDNATAVKFQTSAELTVPLPS 124 Query: 122 M---MLKAIFDPSFLSFAKAFEERAHKIY 147 + + + F S + K + Sbjct: 125 LLKLAISPVIKHEFNSLVDTYMANLKKAF 153 >2rer_A Multifunctional cyclase-dehydratase-3-O-methyl transferase TCMN; aromatase, polyketide, helix-GRIP, anticancer, antibiotic; 1.90A {Streptomyces glaucescens} SCOP: d.129.3.6 PDB: 2res_A 2rez_A Length = 173 Score = 58.3 bits (140), Expect = 6e-10 Identities = 19/148 (12%), Positives = 52/148 (35%), Gaps = 9/148 (6%) Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62 +VN + + + +DIE +PE + I +D G + L + Sbjct: 7 RTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLK--TRPDANGR 64 Query: 63 QREFMTQVRINQKEHYIAVKHIKNLFN-FLENHWHFEEISESKCKVHFSIKYELKNRLF- 120 E+++ ++ + ++ ++ HW + ++ ++ + ++++K Sbjct: 65 VWEWVSHRVPDKGSRTVRAHRVETGPFAYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPF 123 Query: 121 --DMMLKAIFD--PSFLSFAKAFEERAH 144 M + + + K E H Sbjct: 124 DNAHMTAHLNTTTRANMERIKKIIEDRH 151 >2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI- 2, protein structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus HTA426} SCOP: d.129.3.10 Length = 162 Score = 55.6 bits (133), Expect = 4e-09 Identities = 13/145 (8%), Positives = 45/145 (31%), Gaps = 2/145 (1%) Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62 + + + +++ S + D + + CK + + D Y + ++ + + Sbjct: 4 NGNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKY-KADLQIGIAAVKGKYD 62 Query: 63 QREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDM 122 +T ++ + F E I++ ++ ++ E+ Sbjct: 63 AIIEVTDIKPPYHYKLLVNGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEV-GGKVAA 121 Query: 123 MLKAIFDPSFLSFAKAFEERAHKIY 147 + + + F ++ K Sbjct: 122 IGQRMLGGVAKLLISDFFKKIQKEI 146 >3p51_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Length = 160 Score = 53.0 bits (126), Expect = 3e-08 Identities = 14/150 (9%), Positives = 40/150 (26%), Gaps = 9/150 (6%) Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60 M +V+ +++ S + + + L K V + + Sbjct: 1 MPKVYNSIVVDAPVERVWSRIRNFHDFSWAPSLIKSCKKVXXXXXYS----VGARRLLNG 56 Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNL----FNFLENHWHFEEISE-SKCKVHFSIKYEL 115 + I ++ Y + + + H ++ V +S +E Sbjct: 57 EFLDTLIAYSEIERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWES 116 Query: 116 KNRLFDMMLKAIFDPSFLSFAKAFEERAHK 145 + + ++ A F + + Sbjct: 117 ASTEAVEYMNTVYRSLLADLAAEFTSESRR 146 >3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A Length = 155 Score = 51.6 bits (122), Expect = 7e-08 Identities = 11/147 (7%), Positives = 40/147 (27%), Gaps = 7/147 (4%) Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60 + ++Q+ ++ D+ P + + V + + ++ Sbjct: 3 ETVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDKRS------RWTVEAPAP 56 Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISES-KCKVHFSIKYELKNRL 119 + ++ ++ IA + + F + +V + Y Sbjct: 57 LGTVSWEAELTADEPGKRIAWRSLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGS 116 Query: 120 FDMMLKAIFDPSFLSFAKAFEERAHKI 146 ++ +F+ + R + Sbjct: 117 AGAVIARMFNQEPSQQLRDDLMRFKRE 143 >2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, protein structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10 Length = 157 Score = 49.1 bits (116), Expect = 4e-07 Identities = 16/148 (10%), Positives = 43/148 (29%), Gaps = 14/148 (9%) Query: 3 HFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYACM 62 + V+ + +++ ++D +R+ P K V + + E + + + Sbjct: 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTIELRLSLGPLRG----D 69 Query: 63 QREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELK------ 116 R + + + VK + + S S +E Sbjct: 70 ARVRASFEDLEKPSKAT-VKGSGRGAGSTLDFTLRFAVEPSGGGSRVSWVFEGNVGGLAA 128 Query: 117 ---NRLFDMMLKAIFDPSFLSFAKAFEE 141 R+ D + + + + + E Sbjct: 129 SMGGRVLDSLARRMINDVISGVKRELGE 156 >3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovarkonkukian} PDB: 3cnw_A Length = 146 Score = 32.6 bits (73), Expect = 0.035 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 9/143 (6%) Query: 1 MYHFTADRIVNHSSQQMLSLVSDIERYPEFVPLCKKVVIHERDNYGENEVLVASMTINYA 60 M H T + S++Q+ L+ P+++P + G L + Sbjct: 1 MAHTTTSMEIFGSTEQVWQLIGGFNSLPDWLPYIPSS---KLTEGGRVRHLA---NPDGE 54 Query: 61 CMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYE---LKN 117 + + Y + + N+L E + V +S + + + Sbjct: 55 TIIERLEVFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVAVSD 114 Query: 118 RLFDMMLKAIFDPSFLSFAKAFE 140 ++ I+ + AF Sbjct: 115 EEAINLVHGIYSDGLKALQHAFL 137 >2wxw_A Angiotensinogen, serpin A8; glycoprotein, hypertension, vasoconstrictor, renin, serpins, vasoactive, hormone; 3.30A {Homo sapiens} PDB: 2x0b_B Length = 453 Score = 28.2 bits (62), Expect = 0.90 Identities = 7/39 (17%), Positives = 13/39 (33%) Query: 93 NHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPS 131 I + ++ Y+L++ L L AI Sbjct: 338 KKLSPRTIHLTMPQLVLQGSYDLQDLLAQAELPAILHTE 376 >2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155 Score = 27.7 bits (61), Expect = 1.2 Identities = 10/49 (20%), Positives = 19/49 (38%) Query: 93 NHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEE 141 + EI E K V+ I Y+ + + + + S L + + E Sbjct: 100 TTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLER 148 >1qlp_A Alpha-1-antitrypsin; serine protease inhibitor, serpin, glycoprotein, signal, polymorphism, emphysema, disease mutation, acute phase; 2.0A {Homo sapiens} SCOP: e.1.1.1 PDB: 1psi_A 2qug_A 3cwl_A 3cwm_A* 3drm_A 3dru_A 1kct_A 1hp7_A 1oph_A 1oo8_A 1iz2_A* 1atu_A 2d26_A 7api_A* 8api_A* 9api_A* 1ezx_A 1d5s_A 1qmb_A 1d5s_B ... Length = 394 Score = 27.1 bits (59), Expect = 1.6 Identities = 10/92 (10%), Positives = 29/92 (31%) Query: 40 HERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEE 99 N + L + + + + + K ++ + ++ + Sbjct: 224 LGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRS 283 Query: 100 ISESKCKVHFSIKYELKNRLFDMMLKAIFDPS 131 S K+ + Y+LK+ L + + +F Sbjct: 284 ASLHLPKLSITGTYDLKSVLGQLGITKVFSNG 315 >2wxy_C Angiotensinogen, serpin A8; glycoprotein, hypertension, vasoconstrictor, renin, serpins, vasoactive, hormone; 2.10A {Mus musculus} PDB: 2wxx_A 2wy0_C 2wxz_A 2wxz_C 2wy1_A Length = 453 Score = 27.4 bits (60), Expect = 1.6 Identities = 7/97 (7%), Positives = 23/97 (23%), Gaps = 9/97 (9%) Query: 40 HERDNYGENE-----VLVASMTINYACMQREFMTQVRINQKEHYIAVKHIKNLFNFLENH 94 + + V + + + +++ E I + Sbjct: 283 TGNFQHWSDAQNNFSVTCVPLGERATLLLIQPHCISDLDRVEALIFQNDLLTWIENPPPR 342 Query: 95 WHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPS 131 + ++ Y L++ L + L + Sbjct: 343 AIRLTL----PQLEIRGSYNLQDLLAEDKLPTLLGAE 375 >3kcg_I Antithrombin-III, ATIII; michaelis complex, blood coagulation, calcium, disulfide bond, EGF-like domain, glycoprotein, hemophilia, hydrolase; HET: NAG FUC MAN NTP; 1.70A {Homo sapiens} PDB: 1e04_I* 1ath_A 1ant_L* 1br8_L 1azx_I* 1dzh_L* 1e03_L* 1dzg_L* 1e05_L* 1jvq_L* 1lk6_L* 1nq9_I* 1oyh_L* 1r1l_L* 1sr5_A* 2ant_L* 2beh_L* 2hij_L* 2znh_A* 3evj_I* ... Length = 432 Score = 27.1 bits (59), Expect = 1.7 Identities = 10/61 (16%), Positives = 18/61 (29%) Query: 87 LFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPSFLSFAKAFEERAHKI 146 + + + + + LK +L DM L +F P E + Sbjct: 303 VLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDL 362 Query: 147 Y 147 Y Sbjct: 363 Y 363 >1jmo_A HC-II, heparin cofactor II, HLS2; serpin, thrombin, protease, inhibition, inhibitor, blood clotting; HET: TYS NDG NAG; 2.20A {Homo sapiens} SCOP: e.1.1.1 PDB: 1jmj_A* Length = 480 Score = 25.9 bits (56), Expect = 4.6 Identities = 7/55 (12%), Positives = 15/55 (27%) Query: 77 HYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPS 131 + + + + K Y L L M ++ +FD + Sbjct: 348 KTLEAQLTPRVVERWQKSMTNRTREVLLPKFKLEKNYNLVESLKLMGIRMLFDKN 402 >2r9y_A Alpha-2-antiplasmin; inhibitory serpin, plasmin inhibitor, acute phase, glycoprotein, protease inhibitor, secreted, serine protease inhibitor; 2.65A {Mus musculus} Length = 430 Score = 25.5 bits (55), Expect = 5.1 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 2/55 (3%) Query: 82 KHIKNLFNFLENHWHFEEISESKCKVHFSIK--YELKNRLFDMMLKAIFDPSFLS 134 + + NL H +E ++ +L L + L+ +F L Sbjct: 251 EVLANLTWDTLYHPSLQERPTKVWLPKLHLQQQLDLVATLSQLGLQELFQGPDLR 305 >3dy0_A N-terminus plasma serine protease inhibitor; serpin, blood clotting, hydrolase inhibitor; HET: IDS SGN; 1.55A {Homo sapiens} PDB: 1lq8_A* 2hi9_A* Length = 336 Score = 25.2 bits (54), Expect = 6.3 Identities = 9/74 (12%), Positives = 25/74 (33%), Gaps = 4/74 (5%) Query: 58 NYACMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSIKYELKN 117 A ++ ++ Q E+ ++ K ++ + + K Y+L+ Sbjct: 225 GNATALFILPSEGKMQQVENGLSEKTLRKWLKMFKKRQLELYL----PKFSIEGSYQLEK 280 Query: 118 RLFDMMLKAIFDPS 131 L + + +F Sbjct: 281 VLPSLGISNVFTSH 294 >3f02_A Neuroserpin; cleaved form, fenib, human, disease mutation, glycoprotein, protease inhibitor, secreted, serine protease inhibitor; 1.80A {Homo sapiens} PDB: 3fgq_A 1jjo_C 1jjo_A Length = 359 Score = 25.2 bits (54), Expect = 7.4 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 2/67 (2%) Query: 67 MTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKC--KVHFSIKYELKNRLFDMML 124 M V Q+ ++ + E ++ + + +LK+ L + + Sbjct: 250 MMLVLSRQEVPLATLEPLVKAQLVEEWANSVKKQKVEVYLPRFTVEQEIDLKDVLKALGI 309 Query: 125 KAIFDPS 131 IF Sbjct: 310 TEIFIKD 316 >3f5n_A Neuroserpin; cleaved form, fenib, human, tissue plasminogen activator, hydrolase inhibitor; 3.15A {Homo sapiens} Length = 407 Score = 24.8 bits (53), Expect = 7.6 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 2/67 (2%) Query: 67 MTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISESKCKVHFSI--KYELKNRLFDMML 124 M V Q+ ++ + E ++ F++ + +LK+ L + + Sbjct: 250 MMLVLSRQEVPLATLEPLVKAQLVEEWANSVKKQKVEVYLPRFTVEQEIDLKDVLKALGI 309 Query: 125 KAIFDPS 131 IF Sbjct: 310 TEIFIKD 316 >3f1s_A Protein Z-dependent protease inhibitor; PZ, ZPI, complex, serpin, protease inhibitor, protease, glycoprotein, polymorphism, secreted; HET: FLC NAG; 2.30A {Homo sapiens} Length = 385 Score = 24.8 bits (53), Expect = 7.7 Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 3/94 (3%) Query: 40 HERDNYGENEVLVASMTINYACMQREFMTQVRINQKEHYIAV--KHIKNLFNFLENHWHF 97 + ++ + + M V + + ++A+ +L + Sbjct: 213 AGKFASTFDKNFRCHV-LKLPYQGNATMLVVLMEKMGDHLALEDYLTTDLVETWLRNMKT 271 Query: 98 EEISESKCKVHFSIKYELKNRLFDMMLKAIFDPS 131 + K KYE+ L M ++ IF P Sbjct: 272 RNMEVFFPKFKLDQKYEMHELLRQMGIRRIFSPF 305 >1f0c_A ICE inhibitor; apoptosis, caspase inhibitor, protease inhibitor, serpin, viral protein; 2.26A {Cowpox virus} SCOP: e.1.1.1 PDB: 1c8o_A Length = 305 Score = 24.7 bits (53), Expect = 8.2 Identities = 8/44 (18%), Positives = 14/44 (31%) Query: 88 FNFLENHWHFEEISESKCKVHFSIKYELKNRLFDMMLKAIFDPS 131 F + I K + Y L + L + L +F + Sbjct: 219 FKKWCDSMDAMFIDVHIPKFKVTGSYNLVDALVKLGLTEVFGST 262 >2arr_A Plasminogen activator inhibitor-2; serpin, peptide binding, peptide binding protein; 1.55A {Homo sapiens} PDB: 2arq_A 1jrr_A 1by7_A Length = 382 Score = 24.5 bits (52), Expect = 9.2 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 86 NLFNFLENHWHFEEISESKCKVHFSI--KYELKNRLFDMMLKAIFDPSFLSFAKAFEERA 143 + N + E F + YEL++ L M ++ F+ +F+ E Sbjct: 256 DKLNKWTSKDKMAEDEVEVYIPQFKLEEHYELRSILRSMGMEDAFNKGRANFSGMSERND 315 Query: 144 HKI 146 + Sbjct: 316 LFL 318 >3ozq_A Serpin48; SPE, hydrolase I; 1.90A {Tenebrio molitor} Length = 376 Score = 24.6 bits (53), Expect = 9.3 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 2/88 (2%) Query: 44 NYGENEVLVASMTINYACMQREFMTQVRINQKEHYIAVKHIKNLFNFLENHWHFEEISES 103 NY E L A + + +T V NQ E ++++ K +FL ++ + ++ + Sbjct: 210 NYYECHHLDAKL-LELPFKGGASLTIVLSNQIEGLVSLES-KIKRSFLPHNLTKQLVNVA 267 Query: 104 KCKVHFSIKYELKNRLFDMMLKAIFDPS 131 K + K L + +K F Sbjct: 268 LPKFKIESTVDFKKVLKKLGVKKAFGDE 295 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.136 0.409 Gapped Lambda K H 0.267 0.0448 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,380,868 Number of extensions: 61112 Number of successful extensions: 249 Number of sequences better than 10.0: 1 Number of HSP's gapped: 243 Number of HSP's successfully gapped: 46 Length of query: 152 Length of database: 5,693,230 Length adjustment: 84 Effective length of query: 68 Effective length of database: 3,656,734 Effective search space: 248657912 Effective search space used: 248657912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 52 (24.5 bits)