Query gi|254780678|ref|YP_003065091.1| hypothetical protein CLIBASIA_02825 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 108
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 18:22:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780678.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x9m_A DNA polymerase; DNA plo 6.8 1.1E+02 0.0047 13.0 0.7 13 93-105 428-440 (698)
2 2rq6_A ATP synthase epsilon ch 5.7 1.4E+02 0.0059 12.6 0.7 19 26-44 23-41 (138)
3 2ho2_A Fe65 protein, amyloid b 5.1 1.5E+02 0.0063 12.4 0.5 10 98-107 21-30 (38)
4 16vp_A Protein (VP16, VMW65, A 4.6 1.3E+02 0.0055 12.7 -0.1 25 75-99 221-249 (366)
5 1m93_C Serine proteinase inhib 4.6 1.8E+02 0.0075 12.0 0.6 12 87-98 14-25 (41)
6 2e5y_A ATP synthase epsilon ch 4.4 1.8E+02 0.0077 12.0 0.6 19 26-44 24-42 (133)
7 2e45_A Fe65 protein, amyloid b 4.1 2E+02 0.0084 11.8 0.6 10 98-107 37-46 (55)
8 2jek_A RV1873; structural geno 3.9 1.5E+02 0.0063 12.4 -0.3 12 91-102 40-51 (145)
9 3oee_H ATP synthase subunit de 3.5 2.5E+02 0.011 11.3 0.7 19 26-44 31-49 (138)
10 2zuo_A MVP, major vault protei 3.4 2.6E+02 0.011 11.2 0.9 20 29-48 83-102 (861)
No 1
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=6.82 E-value=1.1e+02 Score=13.02 Aligned_cols=13 Identities=46% Similarity=0.874 Sum_probs=9.8
Q ss_pred CCHHCCCCCCCCC
Q ss_conf 2011048886110
Q gi|254780678|r 93 FPRLQNIPSGRTQ 105 (108)
Q Consensus 93 fprlqnipsgrtq 105 (108)
-|-+||||++++-
T Consensus 428 ~PNlqniP~~~~~ 440 (698)
T 1x9m_A 428 FPNLAQIPGVRSP 440 (698)
T ss_dssp SSCTTCCCCTTST
T ss_pred CCCCCCCCCCCCC
T ss_conf 6565678876543
No 2
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=5.67 E-value=1.4e+02 Score=12.56 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.0
Q ss_pred HHHCCCCCCEEEHHHCCCH
Q ss_conf 5421543402102217602
Q gi|254780678|r 26 RKRGKHNDRKILFNHIPFP 44 (108)
Q Consensus 26 rkrgkhndrkilfnhipfp 44 (108)
.-+|...+.-||-||.||-
T Consensus 23 ~~p~~~G~~gILp~H~p~i 41 (138)
T 2rq6_A 23 ILPSTTGQLGILSNHAPLL 41 (138)
T ss_dssp EECCTTSCEEEESSCCSEE
T ss_pred EEECCCCCCEECCCCCCCE
T ss_conf 9977946614058980406
No 3
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, X-RAY, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=5.08 E-value=1.5e+02 Score=12.40 Aligned_cols=10 Identities=50% Similarity=0.999 Sum_probs=6.9
Q ss_pred CCCCCCCCCC
Q ss_conf 4888611015
Q gi|254780678|r 98 NIPSGRTQYA 107 (108)
Q Consensus 98 nipsgrtqya 107 (108)
.||+|.||+.
T Consensus 21 HvptGttQw~ 30 (38)
T 2ho2_A 21 HIPTGTTQWE 30 (38)
T ss_dssp ETTTTEEESS
T ss_pred ECCCCCEECC
T ss_conf 6078853026
No 4
>16vp_A Protein (VP16, VMW65, ATIF); transcriptional regulatory protein; 2.10A {Human herpesvirus 1} SCOP: d.180.1.1
Probab=4.63 E-value=1.3e+02 Score=12.69 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCCC----CCCEECCHHCCC
Q ss_conf 2200111114665----585342011048
Q gi|254780678|r 75 YCVFKGILFNHSK----KHPFIFPRLQNI 99 (108)
Q Consensus 75 ycvfkgilfnhsk----khpfifprlqni 99 (108)
-|.|.-+||||.- ..|.-+-+||.+
T Consensus 221 ~ClFhPvlfnhGvV~leg~PL~~~~Lr~v 249 (366)
T 16vp_A 221 AGLFQPFMFVNGALTVRGVPIEARRLREL 249 (366)
T ss_dssp HSSCCSCSBCCSEEEETTEECCHHHHHHH
T ss_pred EEECCCEEEECCEEEECCCCCCHHHHHHH
T ss_conf 56535335417625667987888999888
No 5
>1m93_C Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1 PDB: 1c8o_B 1f0c_B
Probab=4.57 E-value=1.8e+02 Score=12.04 Aligned_cols=12 Identities=33% Similarity=0.622 Sum_probs=6.6
Q ss_pred CCCCEECCHHCC
Q ss_conf 558534201104
Q gi|254780678|r 87 KKHPFIFPRLQN 98 (108)
Q Consensus 87 kkhpfifprlqn 98 (108)
-.|||+|---.|
T Consensus 14 adhPFlF~Ir~~ 25 (41)
T 1m93_C 14 ADHPFIYVIRHV 25 (41)
T ss_dssp CCSCEEEEEEET
T ss_pred CCCCEEEEEEEC
T ss_conf 899999999938
No 6
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A
Probab=4.45 E-value=1.8e+02 Score=11.96 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=14.6
Q ss_pred HHHCCCCCCEEEHHHCCCH
Q ss_conf 5421543402102217602
Q gi|254780678|r 26 RKRGKHNDRKILFNHIPFP 44 (108)
Q Consensus 26 rkrgkhndrkilfnhipfp 44 (108)
.-+|...+--||-||.|+-
T Consensus 24 ~~p~~~G~~giLp~H~p~i 42 (133)
T 2e5y_A 24 SVKAKSGELGILPGHIPLV 42 (133)
T ss_dssp EEEETTEEEEECTTCCCEE
T ss_pred EEECCCCCCEECCCCCCCE
T ss_conf 9966948724247982215
No 7
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=4.10 E-value=2e+02 Score=11.79 Aligned_cols=10 Identities=50% Similarity=0.999 Sum_probs=6.7
Q ss_pred CCCCCCCCCC
Q ss_conf 4888611015
Q gi|254780678|r 98 NIPSGRTQYA 107 (108)
Q Consensus 98 nipsgrtqya 107 (108)
.||+|.||+.
T Consensus 37 HiptGTtQwe 46 (55)
T 2e45_A 37 HIPTGTTQWE 46 (55)
T ss_dssp ETTTCCEESS
T ss_pred ECCCCCEECC
T ss_conf 6068853036
No 8
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=3.85 E-value=1.5e+02 Score=12.40 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=7.5
Q ss_pred EECCHHCCCCCC
Q ss_conf 342011048886
Q gi|254780678|r 91 FIFPRLQNIPSG 102 (108)
Q Consensus 91 fifprlqnipsg 102 (108)
||||.++..-+.
T Consensus 40 fIFPQl~GLG~S 51 (145)
T 2jek_A 40 FVFPQLRGLGSS 51 (145)
T ss_dssp HHSCCBTTSCCS
T ss_pred EHHHHHCCCCCC
T ss_conf 206565456778
No 9
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3oe7_H*
Probab=3.50 E-value=2.5e+02 Score=11.28 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=15.2
Q ss_pred HHHCCCCCCEEEHHHCCCH
Q ss_conf 5421543402102217602
Q gi|254780678|r 26 RKRGKHNDRKILFNHIPFP 44 (108)
Q Consensus 26 rkrgkhndrkilfnhipfp 44 (108)
.-+|.-.+--||-||+||-
T Consensus 31 ~~p~~~G~~gILp~H~p~i 49 (138)
T 3oee_H 31 NLPAKSGRIGVLANHVPTV 49 (138)
T ss_dssp ECCCSSSCCEECTTCCCCE
T ss_pred EEECCCCCCEECCCCCCCE
T ss_conf 9966845832047883513
No 10
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=3.36 E-value=2.6e+02 Score=11.21 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=16.6
Q ss_pred CCCCCCEEEHHHCCCHHHHE
Q ss_conf 15434021022176023320
Q gi|254780678|r 29 GKHNDRKILFNHIPFPLRTA 48 (108)
Q Consensus 29 gkhndrkilfnhipfplrta 48 (108)
=.|.|+.|-|...||||-..
T Consensus 83 ~~~~~~~~~~~~~~fpl~pg 102 (861)
T 2zuo_A 83 LRHADQEIRLAQDPFPLYPG 102 (861)
T ss_dssp CSSSSEEEECTTCCCCCCSC
T ss_pred ECCCCEEEEECCCCCCCCCC
T ss_conf 63576777508999799996
Done!