Query gi|254780678|ref|YP_003065091.1| hypothetical protein CLIBASIA_02825 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 108 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 08:47:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780678.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1x9ma2 e.8.1.1 (A:211-704) T7 11.2 33 0.0024 14.5 0.7 15 92-106 223-237 (494) 2 d2btoa2 d.79.2.1 (A:253-432) T 7.1 42 0.0031 14.0 -0.1 12 34-45 5-16 (180) 3 d2ho2a1 b.72.1.1 (A:253-285) A 5.8 73 0.0053 12.8 0.5 10 98-107 20-29 (33) 4 d1oh1a_ b.61.2.2 (A:) Staphost 5.3 62 0.0045 13.1 -0.1 17 2-18 36-52 (109) 5 d2jeka1 a.255.1.1 (A:6-145) Hy 4.6 70 0.0051 12.9 -0.3 13 90-102 34-46 (140) 6 d16vpa_ d.180.1.1 (A:) Conserv 4.0 91 0.0066 12.3 -0.1 24 75-98 221-248 (356) 7 d1tuba2 d.79.2.1 (A:246-440) T 3.4 83 0.0061 12.5 -0.7 11 34-44 8-18 (195) 8 d1gkpa1 b.92.1.3 (A:2-54,A:390 3.3 1.4E+02 0.0099 11.4 0.3 15 6-20 1-15 (123) 9 d1f2na_ b.121.4.7 (A:) Sobemov 2.7 98 0.0071 12.1 -1.0 17 90-106 33-49 (189) 10 d1ng0a_ b.121.4.7 (A:) Sobemov 2.3 1.1E+02 0.008 11.9 -1.1 17 90-106 31-47 (192) No 1 >d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Probab=11.24 E-value=33 Score=14.45 Aligned_cols=15 Identities=47% Similarity=0.913 Sum_probs=10.8 Q ss_pred ECCHHCCCCCCCCCC Q ss_conf 420110488861101 Q gi|254780678|r 92 IFPRLQNIPSGRTQY 106 (108) Q Consensus 92 ifprlqnipsgrtqy 106 (108) .-|-|||||+++..| T Consensus 223 ~~pnlqnip~~~~~~ 237 (494) T d1x9ma2 223 AFPNLAQIPGVRSPY 237 (494) T ss_dssp ESSCTTCCCCTTSTT T ss_pred CCCCCCCCCCCCCCC T ss_conf 355534587655444 No 2 >d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Probab=7.11 E-value=42 Score=13.96 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=8.3 Q ss_pred CEEEHHHCCCHH Q ss_conf 021022176023 Q gi|254780678|r 34 RKILFNHIPFPL 45 (108) Q Consensus 34 rkilfnhipfpl 45 (108) |||.-|-||||- T Consensus 5 ~kl~tNLVPfPr 16 (180) T d2btoa2 5 RELLTNLVPQPS 16 (180) T ss_dssp HHHHHHHCSSTT T ss_pred HHHHCCCCCCCC T ss_conf 896152789876 No 3 >d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Probab=5.83 E-value=73 Score=12.77 Aligned_cols=10 Identities=50% Similarity=0.999 Sum_probs=7.2 Q ss_pred CCCCCCCCCC Q ss_conf 4888611015 Q gi|254780678|r 98 NIPSGRTQYA 107 (108) Q Consensus 98 nipsgrtqya 107 (108) .||+|.||+. T Consensus 20 HiptGttQwe 29 (33) T d2ho2a1 20 HIPTGTTQWE 29 (33) T ss_dssp ETTTTEEESS T ss_pred EECCCCCCCC T ss_conf 7068854136 No 4 >d1oh1a_ b.61.2.2 (A:) Staphostatin A (SAV1910, SA1726) {Staphylococcus aureus [TaxId: 1280]} Probab=5.30 E-value=62 Score=13.13 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=8.6 Q ss_pred CCCCCEEEECHHHCCHH Q ss_conf 76687476251105803 Q gi|254780678|r 2 ISAPPLLITNKKLLEPD 18 (108) Q Consensus 2 isappllitnkkllepd 18 (108) ++..||-||-.|-..|| T Consensus 36 ~~tsPLkitfnk~i~p~ 52 (109) T d1oh1a_ 36 LNDSPLKFILSTSDDSD 52 (109) T ss_dssp TTTCCEEEEESCTTTCC T ss_pred CCCCCEEEEEECCCCCH T ss_conf 26886489971588802 No 5 >d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]} Probab=4.60 E-value=70 Score=12.87 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=8.0 Q ss_pred CEECCHHCCCCCC Q ss_conf 5342011048886 Q gi|254780678|r 90 PFIFPRLQNIPSG 102 (108) Q Consensus 90 pfifprlqnipsg 102 (108) =||||.++..-+. T Consensus 34 WfIFPQl~GLG~S 46 (140) T d2jeka1 34 WFVFPQLRGLGSS 46 (140) T ss_dssp HHHSCCBTTSCCS T ss_pred EEHHHHHCCCCCC T ss_conf 3206766466768 No 6 >d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory protein vp16 {Herpes simplex virus type 1 [TaxId: 10298]} Probab=3.98 E-value=91 Score=12.29 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=15.5 Q ss_pred HHHHHHHHHCCCC----CCCEECCHHCC Q ss_conf 2200111114665----58534201104 Q gi|254780678|r 75 YCVFKGILFNHSK----KHPFIFPRLQN 98 (108) Q Consensus 75 ycvfkgilfnhsk----khpfifprlqn 98 (108) -|.|.-+||||.- ..|.-+-+||. T Consensus 221 ~ClFhPvlfnhGvV~leg~pL~a~~Lr~ 248 (356) T d16vpa_ 221 AGLFQPFMFVNGALTVRGVPIEARRLRE 248 (356) T ss_dssp HSSCCSCSBCCSEEEETTEECCHHHHHH T ss_pred EEECCCEEEECCEEEECCCCCCHHHHHH T ss_conf 6753533541763566798788899988 No 7 >d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Probab=3.42 E-value=83 Score=12.49 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=5.4 Q ss_pred CEEEHHHCCCH Q ss_conf 02102217602 Q gi|254780678|r 34 RKILFNHIPFP 44 (108) Q Consensus 34 rkilfnhipfp 44 (108) +|+.-|-|||| T Consensus 8 ~kl~tNLVPfP 18 (195) T d1tuba2 8 TEFQTNLVPYP 18 (195) T ss_dssp HHHHHHHCSSS T ss_pred HHHHCCCCCCC T ss_conf 88615278987 No 8 >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} Probab=3.30 E-value=1.4e+02 Score=11.44 Aligned_cols=15 Identities=47% Similarity=0.864 Sum_probs=12.0 Q ss_pred CEEEECHHHCCHHHH Q ss_conf 747625110580333 Q gi|254780678|r 6 PLLITNKKLLEPDKR 20 (108) Q Consensus 6 pllitnkkllepdkr 20 (108) ||||.|-+++.++.. T Consensus 1 pllIkng~iv~~~~~ 15 (123) T d1gkpa1 1 PLLIKNGEIITADSR 15 (123) T ss_dssp CEEEESCEEEETTEE T ss_pred CEEEECCEEECCCCC T ss_conf 989987299999987 No 9 >d1f2na_ b.121.4.7 (A:) Sobemovirus coat protein {RYMV (Rice yellow mottle virus) [TaxId: 31744]} Probab=2.67 E-value=98 Score=12.14 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=0.0 Q ss_pred CEECCHHCCCCCCCCCC Q ss_conf 53420110488861101 Q gi|254780678|r 90 PFIFPRLQNIPSGRTQY 106 (108) Q Consensus 90 pfifprlqnipsgrtqy 106 (108) |..||+|+.|-++-.|| T Consensus 33 Ps~fPwLs~iA~~y~kY 49 (189) T d1f2na_ 33 PFNLPRVWSLARCYSMW 49 (189) T ss_dssp GGGSHHHHHHHTTBSEE T ss_pred CCCCHHHHHHHHHHHCE T ss_conf 87664789998554201 No 10 >d1ng0a_ b.121.4.7 (A:) Sobemovirus coat protein {Cocksfoot mottle virus [TaxId: 40979]} Probab=2.30 E-value=1.1e+02 Score=11.89 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=0.0 Q ss_pred CEECCHHCCCCCCCCCC Q ss_conf 53420110488861101 Q gi|254780678|r 90 PFIFPRLQNIPSGRTQY 106 (108) Q Consensus 90 pfifprlqnipsgrtqy 106 (108) |.-||+|++|-++-.|| T Consensus 31 P~~fpwLs~iA~~y~kY 47 (192) T d1ng0a_ 31 PAALDRVGTIAKAYALW 47 (192) T ss_dssp STTCTTHHHHHTTEEEE T ss_pred CCCCHHHHHHHHHHHCE T ss_conf 87524789998654221 Done!