Query         gi|254780678|ref|YP_003065091.1| hypothetical protein CLIBASIA_02825 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 108
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 08:47:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780678.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1x9ma2 e.8.1.1 (A:211-704) T7  11.2      33  0.0024   14.5   0.7   15   92-106   223-237 (494)
  2 d2btoa2 d.79.2.1 (A:253-432) T   7.1      42  0.0031   14.0  -0.1   12   34-45      5-16  (180)
  3 d2ho2a1 b.72.1.1 (A:253-285) A   5.8      73  0.0053   12.8   0.5   10   98-107    20-29  (33)
  4 d1oh1a_ b.61.2.2 (A:) Staphost   5.3      62  0.0045   13.1  -0.1   17    2-18     36-52  (109)
  5 d2jeka1 a.255.1.1 (A:6-145) Hy   4.6      70  0.0051   12.9  -0.3   13   90-102    34-46  (140)
  6 d16vpa_ d.180.1.1 (A:) Conserv   4.0      91  0.0066   12.3  -0.1   24   75-98    221-248 (356)
  7 d1tuba2 d.79.2.1 (A:246-440) T   3.4      83  0.0061   12.5  -0.7   11   34-44      8-18  (195)
  8 d1gkpa1 b.92.1.3 (A:2-54,A:390   3.3 1.4E+02  0.0099   11.4   0.3   15    6-20      1-15  (123)
  9 d1f2na_ b.121.4.7 (A:) Sobemov   2.7      98  0.0071   12.1  -1.0   17   90-106    33-49  (189)
 10 d1ng0a_ b.121.4.7 (A:) Sobemov   2.3 1.1E+02   0.008   11.9  -1.1   17   90-106    31-47  (192)

No 1  
>d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacteriophage T7 [TaxId: 10760]}
Probab=11.24  E-value=33  Score=14.45  Aligned_cols=15  Identities=47%  Similarity=0.913  Sum_probs=10.8

Q ss_pred             ECCHHCCCCCCCCCC
Q ss_conf             420110488861101
Q gi|254780678|r   92 IFPRLQNIPSGRTQY  106 (108)
Q Consensus        92 ifprlqnipsgrtqy  106 (108)
                      .-|-|||||+++..|
T Consensus       223 ~~pnlqnip~~~~~~  237 (494)
T d1x9ma2         223 AFPNLAQIPGVRSPY  237 (494)
T ss_dssp             ESSCTTCCCCTTSTT
T ss_pred             CCCCCCCCCCCCCCC
T ss_conf             355534587655444


No 2  
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}
Probab=7.11  E-value=42  Score=13.96  Aligned_cols=12  Identities=42%  Similarity=0.722  Sum_probs=8.3

Q ss_pred             CEEEHHHCCCHH
Q ss_conf             021022176023
Q gi|254780678|r   34 RKILFNHIPFPL   45 (108)
Q Consensus        34 rkilfnhipfpl   45 (108)
                      |||.-|-||||-
T Consensus         5 ~kl~tNLVPfPr   16 (180)
T d2btoa2           5 RELLTNLVPQPS   16 (180)
T ss_dssp             HHHHHHHCSSTT
T ss_pred             HHHHCCCCCCCC
T ss_conf             896152789876


No 3  
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.83  E-value=73  Score=12.77  Aligned_cols=10  Identities=50%  Similarity=0.999  Sum_probs=7.2

Q ss_pred             CCCCCCCCCC
Q ss_conf             4888611015
Q gi|254780678|r   98 NIPSGRTQYA  107 (108)
Q Consensus        98 nipsgrtqya  107 (108)
                      .||+|.||+.
T Consensus        20 HiptGttQwe   29 (33)
T d2ho2a1          20 HIPTGTTQWE   29 (33)
T ss_dssp             ETTTTEEESS
T ss_pred             EECCCCCCCC
T ss_conf             7068854136


No 4  
>d1oh1a_ b.61.2.2 (A:) Staphostatin A (SAV1910, SA1726) {Staphylococcus aureus [TaxId: 1280]}
Probab=5.30  E-value=62  Score=13.13  Aligned_cols=17  Identities=18%  Similarity=0.249  Sum_probs=8.6

Q ss_pred             CCCCCEEEECHHHCCHH
Q ss_conf             76687476251105803
Q gi|254780678|r    2 ISAPPLLITNKKLLEPD   18 (108)
Q Consensus         2 isappllitnkkllepd   18 (108)
                      ++..||-||-.|-..||
T Consensus        36 ~~tsPLkitfnk~i~p~   52 (109)
T d1oh1a_          36 LNDSPLKFILSTSDDSD   52 (109)
T ss_dssp             TTTCCEEEEESCTTTCC
T ss_pred             CCCCCEEEEEECCCCCH
T ss_conf             26886489971588802


No 5  
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.60  E-value=70  Score=12.87  Aligned_cols=13  Identities=38%  Similarity=0.792  Sum_probs=8.0

Q ss_pred             CEECCHHCCCCCC
Q ss_conf             5342011048886
Q gi|254780678|r   90 PFIFPRLQNIPSG  102 (108)
Q Consensus        90 pfifprlqnipsg  102 (108)
                      =||||.++..-+.
T Consensus        34 WfIFPQl~GLG~S   46 (140)
T d2jeka1          34 WFVFPQLRGLGSS   46 (140)
T ss_dssp             HHHSCCBTTSCCS
T ss_pred             EEHHHHHCCCCCC
T ss_conf             3206766466768


No 6  
>d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory protein vp16 {Herpes simplex virus type 1 [TaxId: 10298]}
Probab=3.98  E-value=91  Score=12.29  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=15.5

Q ss_pred             HHHHHHHHHCCCC----CCCEECCHHCC
Q ss_conf             2200111114665----58534201104
Q gi|254780678|r   75 YCVFKGILFNHSK----KHPFIFPRLQN   98 (108)
Q Consensus        75 ycvfkgilfnhsk----khpfifprlqn   98 (108)
                      -|.|.-+||||.-    ..|.-+-+||.
T Consensus       221 ~ClFhPvlfnhGvV~leg~pL~a~~Lr~  248 (356)
T d16vpa_         221 AGLFQPFMFVNGALTVRGVPIEARRLRE  248 (356)
T ss_dssp             HSSCCSCSBCCSEEEETTEECCHHHHHH
T ss_pred             EEECCCEEEECCEEEECCCCCCHHHHHH
T ss_conf             6753533541763566798788899988


No 7  
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=3.42  E-value=83  Score=12.49  Aligned_cols=11  Identities=27%  Similarity=0.712  Sum_probs=5.4

Q ss_pred             CEEEHHHCCCH
Q ss_conf             02102217602
Q gi|254780678|r   34 RKILFNHIPFP   44 (108)
Q Consensus        34 rkilfnhipfp   44 (108)
                      +|+.-|-||||
T Consensus         8 ~kl~tNLVPfP   18 (195)
T d1tuba2           8 TEFQTNLVPYP   18 (195)
T ss_dssp             HHHHHHHCSSS
T ss_pred             HHHHCCCCCCC
T ss_conf             88615278987


No 8  
>d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]}
Probab=3.30  E-value=1.4e+02  Score=11.44  Aligned_cols=15  Identities=47%  Similarity=0.864  Sum_probs=12.0

Q ss_pred             CEEEECHHHCCHHHH
Q ss_conf             747625110580333
Q gi|254780678|r    6 PLLITNKKLLEPDKR   20 (108)
Q Consensus         6 pllitnkkllepdkr   20 (108)
                      ||||.|-+++.++..
T Consensus         1 pllIkng~iv~~~~~   15 (123)
T d1gkpa1           1 PLLIKNGEIITADSR   15 (123)
T ss_dssp             CEEEESCEEEETTEE
T ss_pred             CEEEECCEEECCCCC
T ss_conf             989987299999987


No 9  
>d1f2na_ b.121.4.7 (A:) Sobemovirus coat protein {RYMV (Rice yellow mottle virus) [TaxId: 31744]}
Probab=2.67  E-value=98  Score=12.14  Aligned_cols=17  Identities=24%  Similarity=0.585  Sum_probs=0.0

Q ss_pred             CEECCHHCCCCCCCCCC
Q ss_conf             53420110488861101
Q gi|254780678|r   90 PFIFPRLQNIPSGRTQY  106 (108)
Q Consensus        90 pfifprlqnipsgrtqy  106 (108)
                      |..||+|+.|-++-.||
T Consensus        33 Ps~fPwLs~iA~~y~kY   49 (189)
T d1f2na_          33 PFNLPRVWSLARCYSMW   49 (189)
T ss_dssp             GGGSHHHHHHHTTBSEE
T ss_pred             CCCCHHHHHHHHHHHCE
T ss_conf             87664789998554201


No 10 
>d1ng0a_ b.121.4.7 (A:) Sobemovirus coat protein {Cocksfoot mottle virus [TaxId: 40979]}
Probab=2.30  E-value=1.1e+02  Score=11.89  Aligned_cols=17  Identities=18%  Similarity=0.354  Sum_probs=0.0

Q ss_pred             CEECCHHCCCCCCCCCC
Q ss_conf             53420110488861101
Q gi|254780678|r   90 PFIFPRLQNIPSGRTQY  106 (108)
Q Consensus        90 pfifprlqnipsgrtqy  106 (108)
                      |.-||+|++|-++-.||
T Consensus        31 P~~fpwLs~iA~~y~kY   47 (192)
T d1ng0a_          31 PAALDRVGTIAKAYALW   47 (192)
T ss_dssp             STTCTTHHHHHTTEEEE
T ss_pred             CCCCHHHHHHHHHHHCE
T ss_conf             87524789998654221


Done!