RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780678|ref|YP_003065091.1| hypothetical protein
CLIBASIA_02825 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>gnl|CDD|185412 PTZ00046, PTZ00046, rifin; Provisional.
          Length = 358

 Score = 29.1 bits (66), Expect = 0.26
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 81  ILFNHSKKHPFIFPRLQNIPSGRT 104
           IL  + K HP   P      + R 
Sbjct: 17  ILVYNQKNHPSTTPHTTTTTTTRL 40


>gnl|CDD|129146 TIGR00035, asp_race, aspartate racemase. 
          Length = 229

 Score = 28.2 bits (63), Expect = 0.51
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 24 THRKRGKHNDRKILFNHIPFPLRTA 48
          T  KR + +  ++LFN+   P RTA
Sbjct: 26 TKAKRDQEHPAEVLFNNPNIPDRTA 50


>gnl|CDD|184692 PRK14466, PRK14466, ribosomal RNA large subunit methyltransferase
           N; Provisional.
          Length = 345

 Score = 26.3 bits (58), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)

Query: 69  RALSFKYCVFKGILFNHSKKH 89
           R +SF+Y VFKG   N S KH
Sbjct: 249 RRVSFEYIVFKG--LNDSLKH 267


>gnl|CDD|180138 PRK05573, rplU, 50S ribosomal protein L21; Validated.
          Length = 103

 Score = 26.2 bits (59), Expect = 2.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 19 KRKKNTHRKRG 29
          KR+KN  +K+G
Sbjct: 78 KRRKNYRKKQG 88


>gnl|CDD|182249 PRK10117, PRK10117, trehalose-6-phosphate synthase; Provisional.
          Length = 474

 Score = 25.9 bits (57), Expect = 2.2
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 26  RKRGKHNDRKILFNHIPFP 44
           RKRG  N+R   F HIPFP
Sbjct: 142 RKRGV-NNRIGFFLHIPFP 159


>gnl|CDD|183019 PRK11179, PRK11179, DNA-binding transcriptional regulator AsnC;
           Provisional.
          Length = 153

 Score = 25.8 bits (57), Expect = 2.3
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 54  ITLTSISFSPIKLYTRALSFKYCVFKGILFNHSKKHPFIFPRLQNIP 100
           IT T +  +P     + L +  C F GI+   +K +P    +L+++ 
Sbjct: 53  ITGTRVDVNP-----KQLGYDVCCFIGIILKSAKDYPSALAKLESLD 94


>gnl|CDD|184712 PRK14501, PRK14501, putative bifunctional trehalose-6-phosphate
           synthase/HAD hydrolase subfamily IIB; Provisional.
          Length = 726

 Score = 25.7 bits (57), Expect = 3.0
 Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)

Query: 28  RGKHNDRKI-LFNHIPFP 44
           R +  D +I  F HIPFP
Sbjct: 152 RERLPDARIGFFLHIPFP 169


>gnl|CDD|182106 PRK09841, PRK09841, cryptic autophosphorylating protein tyrosine
           kinase Etk; Provisional.
          Length = 726

 Score = 25.6 bits (56), Expect = 3.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 20  RKKNTHRKRGKHNDRKILFNHIPFPLRTAILALRITLTSISFS 62
           RKKN    + +H  + I F  +  P  +A+ A+R   TS+ F+
Sbjct: 483 RKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFA 525


>gnl|CDD|130225 TIGR01157, pufL, photosynthetic reaction center L subunit.  This
           model describes the photosynthetic reaction center L
           subunit in non-oxygenic photosynthetic bacteria.
           Reaction center is an integral membrane pigment-protein
           that carries out light-driven electron transfer
           reactions. At the core of reaction center is a
           collection light-harvesting cofactors and closely
           associated polypeptides. The core protein complex is
           made of L, M and H subunits. The common cofactors
           include bacterichlorophyll, bacteriopheophytins,
           ubiquinone and no-heme ferrous iron. The net result of
           electron tranfer reactions is the establishment of
           proton electrochemical gradient and production of
           reducing equivalents in form of NADH. Ultimately the
           process results in the reduction of C02 to
           carbohydrates(C6H12O6) In non-oxygenic organisms, the
           electron donor is some organic acid and not water. Much
           of our current functional understanding of
           photosynthesis comes from the structural determination,
           spectroscopic studies and mutational analysis on the
           reaction center of Rhodobacter sphaeroides.
          Length = 239

 Score = 25.1 bits (55), Expect = 4.2
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 40  HIPFPLRTAILALRITLTSISFSPIKLYTRALSFKYCVF 78
           HIPF    AILA    LT +   P+ +     +F Y ++
Sbjct: 83  HIPFAFSFAILAY---LTLVVIRPVMMGAWGYAFPYGIW 118


>gnl|CDD|180158 PRK05601, PRK05601, DNA polymerase III subunit epsilon; Validated.
          Length = 377

 Score = 24.8 bits (54), Expect = 4.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 20  RKKNTHRKRGKHNDRKILFNHIPFPL 45
           R +N   +RG    R+    HIP P+
Sbjct: 156 RNRNRGNRRGGRGRRRQRVGHIPKPV 181


>gnl|CDD|162840 TIGR02400, trehalose_OtsA, alpha,alpha-trehalose-phosphate synthase
           [UDP-forming].  This enzyme catalyzes the key,
           penultimate step in biosynthesis of trehalose, a
           compatible solute made as an osmoprotectant in some
           species in all three domains of life. The gene symbol
           OtsA stands for osmotically regulated trehalose
           synthesis A. Trehalose helps protect against both
           osmotic and thermal stresses, and is made from two
           glucose subunits. This model excludes
           glucosylglycerol-phosphate synthase, an enzyme of an
           analogous osmoprotectant system in many cyanobacterial
           strains. This model does not identify archaeal examples,
           as they are more divergent than
           glucosylglycerol-phosphate synthase. Sequences that
           score in the gray zone between the trusted and noise
           cutoffs include a number of yeast multidomain proteins
           in which the N-terminal domain may be functionally
           equivalent to this family. The gray zone also includes
           the OtsA of Cornyebacterium glutamicum (and related
           species), shown to be responsible for synthesis of only
           trace amounts of trehalose while the majority is
           synthesized by the TreYZ pathway; the significance of
           OtsA in this species is unclear (see Wolf, et al.,
           PubMed:12890033).
          Length = 456

 Score = 24.2 bits (53), Expect = 9.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 38  FNHIPFP 44
           F HIPFP
Sbjct: 157 FLHIPFP 163


>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
          Length = 456

 Score = 24.1 bits (53), Expect = 9.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 1   MISAPPLLIT 10
           MI +PPL+IT
Sbjct: 422 MIISPPLVIT 431


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.327    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0749    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,746,831
Number of extensions: 96038
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 25
Length of query: 108
Length of database: 5,994,473
Length adjustment: 74
Effective length of query: 34
Effective length of database: 4,395,481
Effective search space: 149446354
Effective search space used: 149446354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.0 bits)