RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780678|ref|YP_003065091.1| hypothetical protein CLIBASIA_02825 [Candidatus Liberibacter asiaticus str. psy62] (108 letters) >2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A (A:1-189) Length = 189 Score = 25.3 bits (54), Expect = 3.0 Identities = 5/29 (17%), Positives = 11/29 (37%) Query: 63 PIKLYTRALSFKYCVFKGILFNHSKKHPF 91 P++ + + F G+ + PF Sbjct: 160 PLRDLYKDEVRELAKFLGLPEKIYNRMPF 188 >1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} (A:75-262) Length = 188 Score = 24.4 bits (52), Expect = 5.6 Identities = 7/42 (16%), Positives = 14/42 (33%) Query: 1 MISAPPLLITNKKLLEPDKRKKNTHRKRGKHNDRKILFNHIP 42 +I+ P + ++P +K R N+ K Sbjct: 106 LINEPVIFHAVFSXIKPFLTEKIKERIHXHGNNYKQSLLQHF 147 >1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} (A:1-227,A:445-482) Length = 265 Score = 23.7 bits (51), Expect = 8.1 Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%) Query: 28 RGKHNDRKI-LFNHIPFP 44 R + + +I F HIPFP Sbjct: 142 RKRGVNNRIGFFLHIPFP 159 >1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} (A:) Length = 146 Score = 23.6 bits (51), Expect = 9.9 Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 4/49 (8%) Query: 32 NDRKILFNHIPFPLRTAILALRITLTSISFSPIKLYTRALSFKYCVFKG 80 N KI F ++ + I ++ + + F+ V K Sbjct: 37 NGLKIEFTFERSNTNPSVTVITIQASNSTELDMT----DFVFQAAVPKT 81 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.327 0.142 0.427 Gapped Lambda K H 0.267 0.0710 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 775,748 Number of extensions: 29867 Number of successful extensions: 75 Number of sequences better than 10.0: 1 Number of HSP's gapped: 75 Number of HSP's successfully gapped: 11 Length of query: 108 Length of database: 4,956,049 Length adjustment: 64 Effective length of query: 44 Effective length of database: 2,792,529 Effective search space: 122871276 Effective search space used: 122871276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 50 (23.1 bits)