RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780678|ref|YP_003065091.1| hypothetical protein CLIBASIA_02825 [Candidatus Liberibacter asiaticus str. psy62] (108 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 26.8 bits (59), Expect = 1.1 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 22/65 (33%) Query: 2 ISAPP--LLITNKKLLEPDKRKKNTHRKRGKHNDRKILFNHIPFPLRTAILALRITLTSI 59 +S PP L N L RK K D+ + IPF R L+ + Sbjct: 379 VSGPPQSLYGLNLTL-----RK----AKAPSGLDQ----SRIPFSER----KLKFSN--- 418 Query: 60 SFSPI 64 F P+ Sbjct: 419 RFLPV 423 Score = 26.1 bits (57), Expect = 1.9 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 6/40 (15%) Query: 34 RKILFNHIPFPLRTAILALRITLTSISFSPIKLYTRALSF 73 ++ +P P T A T+ P +L + L + Sbjct: 34 QEQFNKILPEP--TEGFAADDEPTT----PAELVGKFLGY 67 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.5 bits (57), Expect = 1.6 Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 2/14 (14%) Query: 3 SAPPLLITNKKLLE 16 SAP L I K +E Sbjct: 36 SAPALAI--KATME 47 >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Score = 24.3 bits (52), Expect = 7.9 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%) Query: 18 DKRKKNTHRKRGKHNDRKILFNHIP 42 ++RK+ HRK GK + LF + Sbjct: 236 EERKERDHRKIGKELE---LFTNSQ 257 >2wmi_A Fucolectin-related protein; glycoside hydrolase, hydrolase, fucose utilization, blood group antigen; HET: A2G GAL FUC; 1.90A {Streptococcus pneumoniae} PDB: 2wmj_A* 2wmk_A* 2wmi_B* Length = 606 Score = 24.1 bits (52), Expect = 8.2 Identities = 1/36 (2%), Positives = 8/36 (22%), Gaps = 2/36 (5%) Query: 39 NHIPFPLRTAILALRITLTSISFSPIKLYTRALSFK 74 + + + ++ + + L Sbjct: 468 QTGKLKFNSL--EMNVEFEPHTYGIFERISNGLKVN 501 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.327 0.142 0.427 Gapped Lambda K H 0.267 0.0677 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 891,720 Number of extensions: 35959 Number of successful extensions: 89 Number of sequences better than 10.0: 1 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 11 Length of query: 108 Length of database: 5,693,230 Length adjustment: 72 Effective length of query: 36 Effective length of database: 3,947,662 Effective search space: 142115832 Effective search space used: 142115832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 50 (23.1 bits)